Citrus Sinensis ID: 021319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA
Secondary Structure (PSIPRED)
cccccEEEEcccEEEEEcccccEEEEEEcccccEEEEccccccEEEEEccccccccEEccccccccccEEEEEEccccccEEEEccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccEEEEEEEcccccEEEEEcccccEEEEEcccccEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccHEEEEEEHcccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEcccccc
Coil and Loop (DISEMBL)
mgessipfknlhsreytghkkkvhsvawnctgtklasgsvdqtarvwhiephghgkvkdielrghadsvdqlcwdpkhaDLIATASgdktvrlwdarsgkcsqqaelsgeninitykpdgthiavgnrddeltildvrkfkpihrrkfgyeVNEIAWNMTGEMFFLTtgngtvevltypslrpldtvVAHTAGCyciaidpmgryfavgsADSLVSLWDISEMLCVRtftklewpvrtisfshtgdyiasasedlfidisnvhtgrtvhqipcraamnsvewnpkynllayagddknkyqadegvfriygfena
Flexible Loop (DISEMBL)
mgessipfknlhsreytghkKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKcsqqaelsgeninitykpdgthiavgnrddeltildvrkfkpihrrkfgyEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAamnsvewnPKYNLLAYAGDDKNKYQADEGVFRIYGFENA
Low Complexity Region (SEG)
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA
Disordered region (IsUnstruct)
*******************KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC*****LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF***
Disordered Region (DISOPRED)
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF***
Disordered Region (DISEMBL)
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA
Disordered Region (DISPRO)
*GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q8VE80	351	THO complex subunit 3 OS=	yes	no	0.952	0.851	0.519	3e-92
Q96J01	351	THO complex subunit 3 OS=	yes	no	0.952	0.851	0.519	3e-92
Q29RH4	351	THO complex subunit 3 OS=	yes	no	0.952	0.851	0.519	3e-92
P14197	478	WD repeat-containing prot	yes	no	0.958	0.629	0.360	1e-61
Q9USL1	309	Uncharacterized WD repeat	yes	no	0.936	0.951	0.362	5e-56
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.866	0.178	0.320	1e-27
Q00808	1356	Vegetative incompatibilit	no	no	0.799	0.185	0.294	2e-23
Q95RJ9	700	F-box-like/WD repeat-cont	no	no	0.875	0.392	0.293	2e-23
Q9BZK7	514	F-box-like/WD repeat-cont	no	no	0.856	0.523	0.292	4e-23
Q8BHJ5	514	F-box-like/WD repeat-cont	no	no	0.856	0.523	0.292	4e-23

>sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1

 Score =  338 bits (867), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 158/304 (51%), Positives = 211/304 (69%), Gaps = 5/304 (1%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct: 48  TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLE--KDRLVKENNYRGHGDSVDQL 105

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
           T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct: 166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252
            C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct: 226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query: 253 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 309
           ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct: 286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query: 310 GFEN 313
           G  N
Sbjct: 346 GLPN 349

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.
Mus musculus (taxid: 10090)

>sp|Q96J01|THOC3_HUMAN THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1

 Score =  338 bits (867), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 158/304 (51%), Positives = 211/304 (69%), Gaps = 5/304 (1%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct: 48  TREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
           T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct: 166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252
            C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct: 226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query: 253 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 309
           ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct: 286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query: 310 GFEN 313
           G  N
Sbjct: 346 GLPN 349

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless mRNAs and infectious virus production. The recruitment of the TREX complex to the intronless viral mRNA occurs via an interaction between KSHV ORF57 protein and ALYREF/THOC4.

Homo sapiens (taxid: 9606)

>sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1

 Score =  338 bits (867), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 158/304 (51%), Positives = 211/304 (69%), Gaps = 5/304 (1%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct: 48  TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLE--KDRLVKENNYRGHGDSVDQL 105

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
           T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct: 166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252
            C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct: 226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query: 253 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 309
           ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct: 286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query: 310 GFEN 313
           G  N
Sbjct: 346 GLPN 349

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.

Bos taurus (taxid: 9913)

>sp|P14197|AAC3_DICDI WD repeat-containing protein AAC3 OS=Dictyostelium discoideum GN=AAC3 PE=2 SV=2

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/327 (36%), Positives = 190/327 (58%), Gaps = 26/327 (7%)

Query: 8   FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV---------- 57
           F    ++++ G+KKK  SVAWN  GTK+AS   D   RVW+ +P G+             
Sbjct: 153 FSECSTKDFIGNKKKSTSVAWNANGTKIASSGSDGIVRVWNFDPLGNSNNNNNSNNTSSN 212

Query: 58  -------KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110
                  + IEL+GH  S++++ W PK+ DL+A+A  DK +++WD + GKC      + E
Sbjct: 213 SKNNNIKETIELKGHDGSIEKISWSPKNNDLLASAGTDKVIKIWDVKIGKCIGTVSTNSE 272

Query: 111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTG 169
           NI++ + PDG  I    RDD L ++D+   K +   KF G E+N++ W+  G++  +   
Sbjct: 273 NIDVRWSPDGQFIVACTRDDHLALIDLPTIKTLKIYKFNGEELNQVGWDNNGDLILMANS 332

Query: 170 NGTVEVLTY-----PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224
            G +E   +       ++ L T+  HTA  YC+  DP G+Y A GSADS+VSLWDI +M+
Sbjct: 333 MGNIEAYKFLPKSTTHVKHLKTLYGHTASIYCMEFDPTGKYLAAGSADSIVSLWDIEDMM 392

Query: 225 CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP 284
           CV+TF K  +P R++SFS  G +IA++S +  I+I ++ + + +H I C + ++S+ W+P
Sbjct: 393 CVKTFIKSTFPCRSVSFSFDGQFIAASSFESTIEIFHIESSQPIHTIEC-SGVSSLMWHP 451

Query: 285 KYNLLAYAGDDKNKYQADEGVFRIYGF 311
              LLAYA  + N+   D  + R++G+
Sbjct: 452 TLPLLAYA-PEINENNKDPSI-RVFGY 476

Dictyostelium discoideum (taxid: 44689)

>sp|Q9USL1|YJKA_SCHPO Uncharacterized WD repeat-containing protein C18B5.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18B5.10c PE=4 SV=1

 Score =  218 bits (555), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 176/295 (59%), Gaps = 1/295 (0%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           ES   F  L +R+  G +  + S+ WN +G++LAS S   +  VW+ +        ++  
Sbjct: 7   ESLPKFPELKTRDLQGQQGPIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTELGN 66

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           RG+   V+QL WDP H+D +      K +R WD RS K   + E + ENI  T+ P G +
Sbjct: 67  RGYG-LVEQLVWDPTHSDRLMAVYAGKMIRFWDFRSAKPIAEIESNYENIYATWSPSGNY 125

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
               +RDD L+ +D R+ + +   +   E NE  W+ + ++FF+TTG GTV+++ +PSL+
Sbjct: 126 CCASSRDDMLSFIDARERRIMETFQQPCETNECCWSFSEDLFFMTTGLGTVQIMEWPSLK 185

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242
            +  + AH + C+CI   P  R+ A+G AD++ SLWD  E++C R+ T++++P+RT+SFS
Sbjct: 186 RVYDIKAHNSNCFCIEFSPDNRHLAIGGADAITSLWDPQELICERSITRMDYPIRTLSFS 245

Query: 243 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 297
           +   Y+AS SED ++DI++  TG  + +IP    +N V W+P  ++LAYA  + N
Sbjct: 246 YDSRYLASGSEDRYVDIADTKTGDQIWKIPTNGPLNKVAWHPTKHILAYAVSEPN 300

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 145/284 (51%), Gaps = 12/284 (4%)

Query: 18   GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
            GH   V++VA++  G  LASGS DQT R+W I       +    L+GH   V+ + ++P 
Sbjct: 1156 GHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYI----LQGHTSWVNSVVFNPD 1211

Query: 78   HADLIATASGDKTVRLWDARSGKC--SQQAELSGENINITYKPDGTHIAVGNRDDELTIL 135
             + L A+ S D+TVRLW+  S KC  + Q   S  N ++ + PDG+ +A G+ D  + + 
Sbjct: 1212 GSTL-ASGSSDQTVRLWEINSSKCLCTFQGHTSWVN-SVVFNPDGSMLASGSSDKTVRLW 1269

Query: 136  DVRKFKPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
            D+   K +H  + G+   VN +A+N  G M    +G+ TV +    S + L T   HT+ 
Sbjct: 1270 DISSSKCLHTFQ-GHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSW 1328

Query: 194  CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE 253
               +   P G   A GS D  V LW IS   C+ TF      V ++ FS  G  +AS S 
Sbjct: 1329 VSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSG 1388

Query: 254  DLFIDISNVHTGRTVHQIPCRAA-MNSVEWNPKYNLLAYAGDDK 296
            D  + + ++ +G+ ++ +      + S+ ++P   LLA   DD+
Sbjct: 1389 DQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQ 1432

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 126/258 (48%), Gaps = 7/258 (2%)

Query: 10   NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
            N  ++   GH   V SVA++  G ++ASGS D+T ++W     G G      L GH  SV
Sbjct: 831  NACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDT-ASGTGTQT---LEGHGGSV 886

Query: 70   DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNR 128
              + + P   + +A+ S DKT+++WDA SG C+Q  E  G  + ++ + PDG  +A G+ 
Sbjct: 887  WSVAFSPDR-ERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSD 945

Query: 129  DDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV 187
            D  + I D          +  G  V  +A++  G+     +G+ T+++    S     T+
Sbjct: 946  DHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTL 1005

Query: 188  VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY 247
              H    + +A  P G+  A GS D  + +WD +   C +T       V+++ FS  G  
Sbjct: 1006 EGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQR 1065

Query: 248  IASASEDLFIDISNVHTG 265
            +AS S+D  I I +  +G
Sbjct: 1066 VASGSDDHTIKIWDAVSG 1083

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q95RJ9|EBI_DROME F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 137/293 (46%), Gaps = 18/293 (6%)

Query: 21  KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
           K V S+ WNC G+ LA+GS D  AR+W  +    G++    L  H   +  L W+ K  +
Sbjct: 411 KDVTSLDWNCDGSLLATGSYDGYARIWKTD----GRLAST-LGQHKGPIFALKWN-KCGN 464

Query: 81  LIATASGDKTVRLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRK 139
            I +A  DKT  +WDA +G+C+QQ A  S   +++ ++ +    A  + D  + +  +  
Sbjct: 465 YILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVDWQTN-QAFASCSTDQRIHVCRLGV 523

Query: 140 FKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA 198
            +PI   K    EVN I W   G++    + + T+++ +    R    + AH+   Y I 
Sbjct: 524 NEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIWSMNRDRCCHDLQAHSKEIYTIK 583

Query: 199 IDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 249
             P G            A  S DS V LWD+    C+ T TK   PV +++FS  G ++A
Sbjct: 584 WSPTGPGTNNPNTNLILASASFDSTVRLWDVERGSCIHTLTKHTEPVYSVAFSPDGKHLA 643

Query: 250 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 302
           S S D  + I +  TG+ VH       +  V WN K   +  +  D + +  D
Sbjct: 644 SGSFDKCVHIWSTQTGQLVHSYKGTGGIFEVCWNSKGTKVGASASDGSVFVLD 696

F-box-like component of E3 ubiquitin ligase complexes; involved in R7 photoreceptor cell differentiation, cone cell development and neuronal cell cycle control. E3 ubiquitin ligase complexes mediate ubiquitination and subsequent proteasomal degradation of target proteins. Required for specification of R7 photoreceptor cell fate in the eye by participating in the ubiquitination and subsequent proteasomal degradation of Tramtrack (ttk), a general inhibitor of photoreceptor differentiation. Required to block the S phase entry in the peripheral nervous system and central nervous system in a process that does not involve the degradation of ttk. Involved in cone cell development by preventing the transcriptional repression mediated by Su(H) on Dl, probably by participating in a E3 complex that contains sno and mediates the ubiquitination and subsequent proteasomal degradation of some component of the Su(H) repressor complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q9BZK7|TBL1R_HUMAN F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 132/287 (45%), Gaps = 18/287 (6%)

Query: 20  KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA 79
            K V S+ WN  GT LA+GS D  AR+W  +    G +    L  H   +  L W+ K  
Sbjct: 225 NKDVTSLDWNSEGTLLATGSYDGFARIWTKD----GNLAST-LGQHKGPIFALKWN-KKG 278

Query: 80  DLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVR 138
           + I +A  DKT  +WDA +G+  QQ    S   +++ ++ + T  A  + D  + +  + 
Sbjct: 279 NFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLG 337

Query: 139 KFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCI 197
           + +PI   +    EVN I W+ TG +    + + T+++ +      +  + AH    Y I
Sbjct: 338 QDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTI 397

Query: 198 AIDPMG---------RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 248
              P G            A  S DS V LWD+   +C+ T TK + PV +++FS  G Y+
Sbjct: 398 KWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYL 457

Query: 249 ASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 295
           AS S D  + I N  TG  VH       +  V WN   + +  +  D
Sbjct: 458 ASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASD 504

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Homo sapiens (taxid: 9606)

>sp|Q8BHJ5|TBL1R_MOUSE F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 132/287 (45%), Gaps = 18/287 (6%)

Query: 20  KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA 79
            K V S+ WN  GT LA+GS D  AR+W  +    G +    L  H   +  L W+ K  
Sbjct: 225 NKDVTSLDWNSEGTLLATGSYDGFARIWTKD----GNLAST-LGQHKGPIFALKWN-KKG 278

Query: 80  DLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVR 138
           + I +A  DKT  +WDA +G+  QQ    S   +++ ++ + T  A  + D  + +  + 
Sbjct: 279 NFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLG 337

Query: 139 KFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCI 197
           + +PI   +    EVN I W+ TG +    + + T+++ +      +  + AH    Y I
Sbjct: 338 QDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTI 397

Query: 198 AIDPMG---------RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 248
              P G            A  S DS V LWD+   +C+ T TK + PV +++FS  G Y+
Sbjct: 398 KWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYL 457

Query: 249 ASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 295
           AS S D  + I N  TG  VH       +  V WN   + +  +  D
Sbjct: 458 ASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASD 504

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
356566273	313	PREDICTED: THO complex subunit 3-like [G	0.993	0.996	0.932	1e-176
356527204	313	PREDICTED: THO complex subunit 3-like [G	0.993	0.996	0.929	1e-176
225462041	313	PREDICTED: THO complex subunit 3 [Vitis	0.993	0.996	0.935	1e-176
224061651	313	predicted protein [Populus trichocarpa]	0.993	0.996	0.926	1e-175
449463705	314	PREDICTED: THO complex subunit 3-like [C	0.996	0.996	0.907	1e-173
357460359	313	THO complex subunit [Medicago truncatula	0.993	0.996	0.913	1e-172
449526353	314	PREDICTED: THO complex subunit 3-like [C	0.996	0.996	0.904	1e-172
297796487	315	transducin family protein [Arabidopsis l	1.0	0.996	0.860	1e-165
15241134	315	THO complex subunit 3 [Arabidopsis thali	1.0	0.996	0.857	1e-164
294464220	327	unknown [Picea sitchensis]	0.987	0.948	0.858	1e-163

>gi|356566273|ref|XP_003551358.1| PREDICTED: THO complex subunit 3-like [Glycine max]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 291/312 (93%), Positives = 306/312 (98%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E  IPFKNLH+REY+GHKKKVHSVAWNC GTKLASGSVDQTAR+WHIEPHGHGKVKDIEL
Sbjct: 2   EEQIPFKNLHNREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           +AVGNRDDELTILDVRKFKPIHRRKF YEVNEIAWNMTGEMFFLTTGNGTVEVL+YPSLR
Sbjct: 122 VAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLR 181

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242
           PLDT++AHTAGCYCIAIDP+GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI F+
Sbjct: 182 PLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIGFN 241

Query: 243 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 302
           +TGD+IASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK+QAD
Sbjct: 242 YTGDFIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKHQAD 301

Query: 303 EGVFRIYGFENA 314
           EGVFRI+GF+NA
Sbjct: 302 EGVFRIFGFKNA 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527204|ref|XP_003532202.1| PREDICTED: THO complex subunit 3-like [Glycine max]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 290/312 (92%), Positives = 306/312 (98%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E  IPFKNLHSREY+GHKKKVHSVAWNC GTKLASGSVDQTAR+WHIEPHGHGKVKDIEL
Sbjct: 2   EEQIPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           +AVGNRDDELTILDVRKFKPIHRRKF YEVNEI+WNMTGEMFFLTTGNGTVEVL+YPSLR
Sbjct: 122 VAVGNRDDELTILDVRKFKPIHRRKFNYEVNEISWNMTGEMFFLTTGNGTVEVLSYPSLR 181

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242
           PLDT++AHTAGCYCIAIDP+GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI F+
Sbjct: 182 PLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIGFN 241

Query: 243 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 302
           ++GD+IASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK+QAD
Sbjct: 242 YSGDFIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKHQAD 301

Query: 303 EGVFRIYGFENA 314
           EGVFRI+GF+NA
Sbjct: 302 EGVFRIFGFKNA 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462041|ref|XP_002274754.1| PREDICTED: THO complex subunit 3 [Vitis vinifera] gi|147789347|emb|CAN62349.1| hypothetical protein VITISV_004943 [Vitis vinifera] gi|296089987|emb|CBI39806.3| unnamed protein product [Vitis vinifera]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/312 (93%), Positives = 305/312 (97%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E +IPFKNLHSREY GHKKKVHSVAWNCTGTKLASGSVDQTAR+W IE HGHGKVKDIEL
Sbjct: 2   EETIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARIWLIEQHGHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC+QQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCTQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           IAVGNRDDELTILDVRKFKPIHRRKF YEVNEIAWNMTGEMFFLTTGNGTVEVL YP+LR
Sbjct: 122 IAVGNRDDELTILDVRKFKPIHRRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPALR 181

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242
           PLDT++AHTAGCYCIAIDP+GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF+
Sbjct: 182 PLDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFN 241

Query: 243 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 302
           HTG+YIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKNKYQAD
Sbjct: 242 HTGEYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQAD 301

Query: 303 EGVFRIYGFENA 314
           EGVFRI+GFE+A
Sbjct: 302 EGVFRIFGFESA 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061651|ref|XP_002300586.1| predicted protein [Populus trichocarpa] gi|118482489|gb|ABK93167.1| unknown [Populus trichocarpa] gi|222847844|gb|EEE85391.1| predicted protein [Populus trichocarpa]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 289/312 (92%), Positives = 304/312 (97%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E +IPFKNLHSREY GHKKKVHSVAWNCTGTKLASGSVDQTARVWHI+ HGHGK+KDIEL
Sbjct: 2   EETIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIDLHGHGKIKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ ELSGENINITY+PDGTH
Sbjct: 62  KGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQTELSGENINITYRPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           +AVGNRDDELTILDVRKFKPIHRRKF YEVNEIAWNMTGEMF LTTGNGTVEVL+YPSL+
Sbjct: 122 VAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFLLTTGNGTVEVLSYPSLQ 181

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242
           PL+TV+AHTAGCYCIAIDP GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF+
Sbjct: 182 PLETVMAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFN 241

Query: 243 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 302
           HTGD+IASASEDLFIDISNVHTGR+VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ D
Sbjct: 242 HTGDFIASASEDLFIDISNVHTGRSVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQTD 301

Query: 303 EGVFRIYGFENA 314
           EGVFRI+GFE+A
Sbjct: 302 EGVFRIFGFESA 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463705|ref|XP_004149572.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus]

 Score =  612 bits (1577), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 284/313 (90%), Positives = 303/313 (96%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M ES+  FKNLHSREY GHKKKVHSVAWNCTG KLASGSVDQTARVWHIEPHGHGKVKD+
Sbjct: 1   MEESAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
           THIAVGNRDDELTILDVRKFKP+H+RKF YEVNEIAWNMTGEMFFLTTGNGTVEVL YPS
Sbjct: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180

Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240
           LRP++T++AHTAGCYCIAIDP+G YFAVGSADSLVSLWDIS+MLCVRTFTKLEWPVRTIS
Sbjct: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240

Query: 241 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 300
           F+HTG+YIASASEDLFIDISNV TGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKNKYQ
Sbjct: 241 FNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300

Query: 301 ADEGVFRIYGFEN 313
           ADEG+FRI+GFE+
Sbjct: 301 ADEGIFRIFGFES 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460359|ref|XP_003600461.1| THO complex subunit [Medicago truncatula] gi|355489509|gb|AES70712.1| THO complex subunit [Medicago truncatula]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 285/312 (91%), Positives = 299/312 (95%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           E    FKNLHSREY+GHKKKVHSVAWNC GTKLASGSVDQTAR+WHI+PH HGKVKDIEL
Sbjct: 2   EEQFSFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIDPHAHGKVKDIEL 61

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GH DSVDQLCWDPKH DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH
Sbjct: 62  KGHTDSVDQLCWDPKHPDLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 121

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           +AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNMTGEMFFLTTGNGTVEVL+YPSLR
Sbjct: 122 VAVGNRDDELTILDVRKFKPMHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLR 181

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242
           PLDT++AHTAGCYCIAIDP GR+FAVGSADSLVSLW ISEMLCVRTFTKLEWPVRTISF+
Sbjct: 182 PLDTLMAHTAGCYCIAIDPTGRHFAVGSADSLVSLWVISEMLCVRTFTKLEWPVRTISFN 241

Query: 243 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 302
           HTGD IASASEDLFIDISNVHTG+TVH IPCRAAMNSVEWNPKYN+LAYAGDDKNKYQAD
Sbjct: 242 HTGDLIASASEDLFIDISNVHTGKTVHHIPCRAAMNSVEWNPKYNVLAYAGDDKNKYQAD 301

Query: 303 EGVFRIYGFENA 314
           EGVFRI+GFENA
Sbjct: 302 EGVFRIFGFENA 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526353|ref|XP_004170178.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 283/313 (90%), Positives = 302/313 (96%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M ES+  FKNLHSREY GHKKKVHSVAWNCTG KLASGSVDQTARVWHIEPHGHGKVKD+
Sbjct: 1   MEESAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
           THIAVGNRDDELTILDVRKFKP+H+RKF YEVNEIAWNMTGEMFFLTTGNGTVEVL YPS
Sbjct: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180

Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240
           LRP++T++AHTAGCYCIAIDP+G YFAVGSADSLVSLWDIS+MLCVRTFTKL WPVRTIS
Sbjct: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLRWPVRTIS 240

Query: 241 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 300
           F+HTG+YIASASEDLFIDISNV TGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKNKYQ
Sbjct: 241 FNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300

Query: 301 ADEGVFRIYGFEN 313
           ADEG+FRI+GFE+
Sbjct: 301 ADEGIFRIFGFES 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796487|ref|XP_002866128.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297311963|gb|EFH42387.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 271/315 (86%), Positives = 298/315 (94%), Gaps = 1/315 (0%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M E++IPFK+LHSREY GHKKKVHSVAWN  GTKLASGSVDQTAR+W+IEPHGH K KD+
Sbjct: 1   MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DL+ATASGDK+VRLWDARSGKC+QQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
           TH+AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNM G+ FFLTTG GTVEVL+YPS
Sbjct: 121 THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMAGDFFFLTTGLGTVEVLSYPS 180

Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240
           L+PLDT+ AHTAGCYCIAIDP GRYFAVGSADSLVSLWDIS+MLC+RTFTKLEWPVRTIS
Sbjct: 181 LKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTIS 240

Query: 241 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KY 299
           F+++G+YIASASEDLFIDI+NV TGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN KY
Sbjct: 241 FNYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKY 300

Query: 300 QADEGVFRIYGFENA 314
             DEGVFRI+GFE++
Sbjct: 301 NTDEGVFRIFGFESS 315

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241134|ref|NP_200424.1| THO complex subunit 3 [Arabidopsis thaliana] gi|9758633|dbj|BAB09295.1| unnamed protein product [Arabidopsis thaliana] gi|20260442|gb|AAM13119.1| unknown protein [Arabidopsis thaliana] gi|23197932|gb|AAN15493.1| unknown protein [Arabidopsis thaliana] gi|332009341|gb|AED96724.1| THO complex subunit 3 [Arabidopsis thaliana]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 270/315 (85%), Positives = 297/315 (94%), Gaps = 1/315 (0%)

Query: 1   MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
           M E++IPFK+LHSREY GHKKKVHSVAWN  GTKLASGSVDQTAR+W+IEPHGH K KD+
Sbjct: 1   MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL 60

Query: 61  ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
           EL+GH DSVDQLCWDPKH+DL+ATASGDK+VRLWDARSGKC+QQ ELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
           TH+AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNM G+ FFLTTG GTVEVL+YPS
Sbjct: 121 THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPS 180

Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240
           L+PLDT+ AHTAGCYCIAIDP GRYFAVGSADSLVSLWDIS+MLC+RTFTKLEWPVRTIS
Sbjct: 181 LKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTIS 240

Query: 241 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KY 299
           F+++G+YIASASEDLFIDI+NV TGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN KY
Sbjct: 241 FNYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKY 300

Query: 300 QADEGVFRIYGFENA 314
             DEGVFRI+GFE++
Sbjct: 301 NTDEGVFRIFGFESS 315

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294464220|gb|ADE77625.1| unknown [Picea sitchensis]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 266/310 (85%), Positives = 293/310 (94%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           +S+  FKNLH+REY  HKKKVHSVAWNCTGTKLASGSVDQTARVW+IEPHGH K KD+EL
Sbjct: 16  DSAPNFKNLHTREYAAHKKKVHSVAWNCTGTKLASGSVDQTARVWNIEPHGHSKAKDLEL 75

Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH 122
           +GHADSVDQLCWDPKHA+L+ATASGD+TVRLWDARSGKCSQQ ELSGENINIT+KPDGTH
Sbjct: 76  KGHADSVDQLCWDPKHAELLATASGDRTVRLWDARSGKCSQQVELSGENINITFKPDGTH 135

Query: 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
           IAVGNRDDELTI+DVRKFKP+H+RKF YEVNEIAWN TGE+FFLTTGNGTVEVL+YPSL+
Sbjct: 136 IAVGNRDDELTIIDVRKFKPLHKRKFSYEVNEIAWNTTGELFFLTTGNGTVEVLSYPSLQ 195

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242
            L T+VAHTAGCYCIAIDP+GRYFAVGSAD+LVSLWD+SEMLCVRTFTKLEWPVRTISF+
Sbjct: 196 ALHTLVAHTAGCYCIAIDPIGRYFAVGSADALVSLWDLSEMLCVRTFTKLEWPVRTISFN 255

Query: 243 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 302
           H G YIASASEDLFIDI++V TGRT+HQI CRAAMNSVEWNPKYNLLA+AGDDKNKY  D
Sbjct: 256 HDGQYIASASEDLFIDIADVQTGRTIHQISCRAAMNSVEWNPKYNLLAFAGDDKNKYLTD 315

Query: 303 EGVFRIYGFE 312
           EGVFR++GFE
Sbjct: 316 EGVFRVFGFE 325

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2161840	315	TEX1 "AT5G56130" [Arabidopsis	1.0	0.996	0.857	1.3e-153
ZFIN|ZDB-GENE-040808-14	322	thoc3 "THO complex 3" [Danio r	0.968	0.944	0.519	6e-87
UNIPROTKB|F1NUQ0	381	THOC3 "Uncharacterized protein	0.955	0.787	0.524	7.7e-87
UNIPROTKB|Q29RH4	351	THOC3 "THO complex subunit 3"	0.952	0.851	0.519	9.9e-87
UNIPROTKB|E2RC43	351	THOC3 "Uncharacterized protein	0.952	0.851	0.519	9.9e-87
UNIPROTKB|Q96J01	351	THOC3 "THO complex subunit 3"	0.952	0.851	0.519	9.9e-87
UNIPROTKB|F1S386	351	THOC3 "Uncharacterized protein	0.952	0.851	0.519	9.9e-87
MGI|MGI:1920916	351	Thoc3 "THO complex 3" [Mus mus	0.952	0.851	0.519	9.9e-87
RGD|1311669	351	Thoc3 "THO complex 3" [Rattus	0.952	0.851	0.519	9.9e-87
FB|FBgn0037569	320	tex "tex" [Drosophila melanoga	0.949	0.931	0.521	3.1e-76

TAIR|locus:2161840 TEX1 "AT5G56130" [Arabidopsis thaliana (taxid:3702)]

 Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
 Identities = 270/315 (85%), Positives = 297/315 (94%)

Query:     1 MGESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60
             M E++IPFK+LHSREY GHKKKVHSVAWN  GTKLASGSVDQTAR+W+IEPHGH K KD+
Sbjct:     1 MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL 60

Query:    61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
             EL+GH DSVDQLCWDPKH+DL+ATASGDK+VRLWDARSGKC+QQ ELSGENINITYKPDG
Sbjct:    61 ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDG 120

Query:   121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
             TH+AVGNRDDELTILDVRKFKP+HRRKF YEVNEIAWNM G+ FFLTTG GTVEVL+YPS
Sbjct:   121 THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPS 180

Query:   181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240
             L+PLDT+ AHTAGCYCIAIDP GRYFAVGSADSLVSLWDIS+MLC+RTFTKLEWPVRTIS
Sbjct:   181 LKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTIS 240

Query:   241 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KY 299
             F+++G+YIASASEDLFIDI+NV TGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN KY
Sbjct:   241 FNYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKY 300

Query:   300 QADEGVFRIYGFENA 314
               DEGVFRI+GFE++
Sbjct:   301 NTDEGVFRIFGFESS 315

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=IMP

GO:0031047 "gene silencing by RNA" evidence=IMP

ZFIN|ZDB-GENE-040808-14 thoc3 "THO complex 3" [Danio rerio (taxid:7955)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 161/310 (51%), Positives = 214/310 (69%)

Query:     8 FKNLH-SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA 66
             F+N + SRE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH 
Sbjct:    13 FRNNNKSREFPAHSAKVHSVAWSCDGKRLASGSFDKTASVFVLEKDR--LVKENNYRGHG 70

Query:    67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG 126
             DSVDQLCW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVG
Sbjct:    71 DSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCMATVSTKGENINICWSPDGQTIAVG 130

Query:   127 NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT 186
             N+DD +T +D +  +P    +F +EVNEI+WN   +MFFLT GNG + +L+YP L+ + +
Sbjct:   131 NKDDVVTFIDAKTHRPRAEEQFKFEVNEISWNNDNDMFFLTNGNGCINILSYPELKLIQS 190

Query:   187 VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD 246
             + AH + C CI  DP G+YFA GSAD+LVSLW++ E++CVR F++L+WPVRT+SFSH G 
Sbjct:   191 INAHPSNCICIKFDPTGKYFATGSADALVSLWNVEELVCVRCFSRLDWPVRTLSFSHDGK 250

Query:   247 YIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQADE-- 303
              +ASASED FIDI+ V TG  + +I C +   +V W+PK  LLAYA DDK  KY ++   
Sbjct:   251 MLASASEDHFIDIAEVETGEKLWEIQCESPTFTVAWHPKRPLLAYACDDKEGKYDSNREA 310

Query:   304 GVFRIYGFEN 313
             G  +++G  N
Sbjct:   311 GTVKLFGLPN 320

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NUQ0 THOC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 160/305 (52%), Positives = 210/305 (68%)

Query:    10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
             N  SRE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSV
Sbjct:    17 NTRSREFPAHGAKVHSVAWSCCGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSV 74

Query:    70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
             DQLCW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+D
Sbjct:    75 DQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKD 134

Query:   130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
             D +T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ A
Sbjct:   135 DVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPIQSINA 194

Query:   190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 249
             H + C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +A
Sbjct:   195 HPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLA 254

Query:   250 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVF 306
             SASED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  
Sbjct:   255 SASEDHFIDIAEVETGEKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTV 314

Query:   307 RIYGF 311
             +  GF
Sbjct:   315 KSSGF 319

GO:0000346 "transcription export complex" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

UNIPROTKB|Q29RH4 THOC3 "THO complex subunit 3" [Bos taurus (taxid:9913)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 158/304 (51%), Positives = 211/304 (69%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query:   253 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 309
             ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct:   286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query:   310 GFEN 313
             G  N
Sbjct:   346 GLPN 349

GO:0005634 "nucleus" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RC43 THOC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 158/304 (51%), Positives = 211/304 (69%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query:   253 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 309
             ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct:   286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query:   310 GFEN 313
             G  N
Sbjct:   346 GLPN 349

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0000346 "transcription export complex" evidence=IEA

UNIPROTKB|Q96J01 THOC3 "THO complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 158/304 (51%), Positives = 211/304 (69%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query:   253 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 309
             ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct:   286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query:   310 GFEN 313
             G  N
Sbjct:   346 GLPN 349

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=IDA

GO:0000346 "transcription export complex" evidence=IDA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IDA

UNIPROTKB|F1S386 THOC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 158/304 (51%), Positives = 211/304 (69%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query:   253 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 309
             ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct:   286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query:   310 GFEN 313
             G  N
Sbjct:   346 GLPN 349

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0000346 "transcription export complex" evidence=IEA

MGI|MGI:1920916 Thoc3 "THO complex 3" [Mus musculus (taxid:10090)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 158/304 (51%), Positives = 211/304 (69%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query:   253 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 309
             ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct:   286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query:   310 GFEN 313
             G  N
Sbjct:   346 GLPN 349

GO:0000346 "transcription export complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

RGD|1311669 Thoc3 "THO complex 3" [Rattus norvegicus (taxid:10116)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 158/304 (51%), Positives = 211/304 (69%)

Query:    13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
             +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   RGH DSVDQL
Sbjct:    48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR--LVKENNYRGHGDSVDQL 105

Query:    73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
             CW P + DL  TASGDKT+R+WD R+ KC       GENINI + PDG  IAVGN+DD +
Sbjct:   106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165

Query:   133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
             T +D +  +     +F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH +
Sbjct:   166 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 225

Query:   193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252
              C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASAS
Sbjct:   226 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 285

Query:   253 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIY 309
             ED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++
Sbjct:   286 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 345

Query:   310 GFEN 313
             G  N
Sbjct:   346 GLPN 349

GO:0000346 "transcription export complex" evidence=IEA;ISO

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA;ISO

FB|FBgn0037569 tex "tex" [Drosophila melanogaster (taxid:7227)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 158/303 (52%), Positives = 191/303 (63%)

Query:    12 HS--REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
             HS  RE   H  KVHSV WN  G  LASGS D+T  V+ +E      +K    RGH  SV
Sbjct:    18 HSKIREQRSHMSKVHSVCWNADGRYLASGSFDKTVVVYSLERDRF--LKGNTYRGHTASV 75

Query:    70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
             DQLCW   + D  ATASGDKTVR+WD R GKC       GENINI + PDG  IAVGN++
Sbjct:    76 DQLCWHRTNPDQFATASGDKTVRIWDIRVGKCVSVTNTKGENINIAWSPDGKTIAVGNKE 135

Query:   130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
             D +T +D R  K      F +EVNEI+WN T ++FFLT G G + +L+YPSL    T+ A
Sbjct:   136 DLITFIDTRTNKIRVEEPFSFEVNEISWNNTNDLFFLTNGLGCMHILSYPSLEHQMTLKA 195

Query:   190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 249
             H A C CI   P G+YFA GSAD+ VSLWD +E+ C+R  ++LEWPVRTISFSH    IA
Sbjct:   196 HPANCICIEFGPTGKYFATGSADAQVSLWDANELACLRMISRLEWPVRTISFSHDERMIA 255

Query:   250 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK-NKYQADEGVFRI 308
              ASEDL IDI+   TG  V  I   A+  +V W+PK  LLAYA D+K N  + D G  +I
Sbjct:   256 LASEDLIIDIAFTETGERVTDILVDASTFTVAWHPKQYLLAYACDEKDNDRRRDAGNVKI 315

Query:   309 YGF 311
             YGF
Sbjct:   316 YGF 318

GO:0005875 "microtubule associated complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VE80	THOC3_MOUSE	No assigned EC number	0.5197	0.9522	0.8518	yes	no
Q96J01	THOC3_HUMAN	No assigned EC number	0.5197	0.9522	0.8518	yes	no
Q29RH4	THOC3_BOVIN	No assigned EC number	0.5197	0.9522	0.8518	yes	no
Q9USL1	YJKA_SCHPO	No assigned EC number	0.3627	0.9363	0.9514	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-37
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-35
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-34
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-25
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-23
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	9e-08
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-06
smart00320	40	smart00320, WD40, WD40 repeats	9e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	9e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  134 bits (339), Expect = 2e-37
 Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 7/208 (3%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R  TGH   V SVA++  G  L+S S D+T +VW +E    GK     LRGH D V+ + 
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---GKCL-TTLRGHTDWVNSVA 142

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
           + P     +A++S D T++LWD R+GKC          +N + + PDG  +   + D  +
Sbjct: 143 FSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201

Query: 133 TILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT 191
            + D+   K +   R     VN +A++  G +    + +GT+ V    +   + T+  HT
Sbjct: 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261

Query: 192 AGCYCIAIDPMGRYFAVGSADSLVSLWD 219
                +A  P G+  A GSAD  + +WD
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  127 bits (321), Expect = 9e-35
 Identities = 75/290 (25%), Positives = 119/290 (41%), Gaps = 52/290 (17%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             R   GH   V  VA++  G  LA+GS D T +VW +E           L+GH   V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE----TGELLRTLKGHTGPVRD 56

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGTHIAVGNR 128
           +         +A+ S DKT+RLWD  +G+C +   L+G    ++   + PDG  ++  +R
Sbjct: 57  VAASA-DGTYLASGSSDKTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSR 113

Query: 129 DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188
           D  + + DV   K +                                          T+ 
Sbjct: 114 DKTIKVWDVETGKCLT-----------------------------------------TLR 132

Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 248
            HT     +A  P G + A  S D  + LWD+    CV T T     V +++FS  G+ +
Sbjct: 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKL 192

Query: 249 ASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKN 297
            S+S D  I + ++ TG+ +  +      +NSV ++P   LLA   +D  
Sbjct: 193 LSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  126 bits (318), Expect = 3e-34
 Identities = 77/287 (26%), Positives = 120/287 (41%), Gaps = 52/287 (18%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R   GH   V  VA +  GT LASGS D+T R+W +E           L GH   V  + 
Sbjct: 45  RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE----TGECVRTLTGHTSYVSSVA 100

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRDD 130
           + P    +++++S DKT+++WD  +GKC     L G      ++ + PDGT +A  ++D 
Sbjct: 101 FSPDG-RILSSSSRDKTIKVWDVETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
            + + D+R  K +                                          T+  H
Sbjct: 158 TIKLWDLRTGKCVA-----------------------------------------TLTGH 176

Query: 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS 250
           T     +A  P G      S+D  + LWD+S   C+ T    E  V +++FS  G  +AS
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236

Query: 251 ASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 296
            SED  I + ++ TG  V  +     ++ S+ W+P    LA    D 
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  114 bits (285), Expect = 1e-28
 Identities = 73/289 (25%), Positives = 133/289 (46%), Gaps = 13/289 (4%)

Query: 19  HKKKVHSVAWNCTGTK---LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD 75
           H   V  +A +        LAS S+D T ++W +   G        L GH++SV  L + 
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT---LEGHSESVTSLAFS 164

Query: 76  PKHADLIATASGDKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD-ELT 133
           P    L + +S D T++LWD R+GK  S  A  +    ++ + PDG  +      D  + 
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 134 ILDVRKFKPIHRRKFGYEVNEI-AWNMTGEMFFLTTGNGTVEVLTYPSLR-PLDTVVAHT 191
           + D+   K +     G+  + + +++  G +    + +GT+ +    S    L T+  H+
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIA 249
           +    +A  P G+  A GS+D  V LWD+     + + T    E PV ++SFS  G  + 
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344

Query: 250 SA-SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 297
           S  S+D  I + ++ TG+ +  +   + + SV ++P   +++    D  
Sbjct: 345 SGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT 393

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  111 bits (278), Expect = 1e-27
 Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 15/294 (5%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            R   GH + V S+A++  G  LASGS +D T ++W +            L GH D V  
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----LAGHTDPVSS 203

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI--TYKPDGTHIAVGNRD 129
           L + P    LIA+ S D T+RLWD  +GK  +   LSG + ++  ++ PDG+ +A G+ D
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSVVSSFSPDGSLLASGSSD 262

Query: 130 DELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMFFLTTGNGTVEV--LTYPSLRPLD 185
             + + D+R    + R   G    V  +A++  G++    + +GTV +  L    L    
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 186 TVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT 244
           T+  H      ++  P G     G S D  + LWD+     ++T       V ++SFS  
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPD 381

Query: 245 GDYIASASEDLFIDISNVHTGRTVHQIPCRAAM-NSVEWNPKYNLLAYAGDDKN 297
           G  ++S S D  + + ++ TG  +  +    +   S++++P    LA    D  
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  109 bits (271), Expect = 8e-27
 Identities = 72/256 (28%), Positives = 119/256 (46%), Gaps = 13/256 (5%)

Query: 16  YTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
             GH   V S+A++  G   +ASGS D T R+W +     GK+    L GH+DSV    +
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---GKLLRSTLSGHSDSVVS-SF 249

Query: 75  DPKHADLIATASGDKTVRLWDARSGK-CSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
            P    L+A+ S D T+RLWD RS     +       ++  + + PDG  +A G+ D  +
Sbjct: 250 SPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 133 TILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVV 188
            + D+   K +           V+ ++++  G +       +GT+ +    + +PL T+ 
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 248
            H+     ++  P GR  + GS D  V LWD+S    +R        V ++ FS  G  +
Sbjct: 369 GHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSL 427

Query: 249 ASASEDLFIDISNVHT 264
           AS S D  I + ++ T
Sbjct: 428 ASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  104 bits (258), Expect = 6e-25
 Identities = 82/308 (26%), Positives = 145/308 (47%), Gaps = 17/308 (5%)

Query: 3   ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           +S +   +L S    GH+  + S+A++  G  L SGS D T ++W ++    G+     L
Sbjct: 48  DSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDN---GEKLIKSL 104

Query: 63  RG-HADSVDQLCWDPKHADLIATASG--DKTVRLWDARS-GKCSQQAELSGENIN-ITYK 117
            G H  SV +L       + I  AS   D TV+LWD  + GK  +  E   E++  + + 
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164

Query: 118 PDGTHIAVGNRDDELTIL-DVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTG-NGTVE 174
           PDG  +A G+  D    L D+R  KP+         V+ +A++  G +   +   +GT+ 
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 175 VLTYPSLRPL-DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI-SEMLCVRTFTKL 232
           +    + + L  T+  H+      +  P G   A GS+D  + LWD+ S    +RT +  
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283

Query: 233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA---AMNSVEWNPKYNLL 289
              V +++FS  G  +AS S D  + + ++ TG+ +  +  +     ++S+ ++P  +LL
Sbjct: 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343

Query: 290 AYAGDDKN 297
              G D  
Sbjct: 344 VSGGSDDG 351

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.0 bits (245), Expect = 3e-23
 Identities = 72/255 (28%), Positives = 116/255 (45%), Gaps = 21/255 (8%)

Query: 5   SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
            +    L     +GH   V S +++  G+ LASGS D T R+W +            L G
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLR---SSSSLLRTLSG 282

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGT 121
           H+ SV  + + P    L+A+ S D TVRLWD  +GK      L G    ++   + PDG+
Sbjct: 283 HSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341

Query: 122 HIAVGNRDDE-LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180
            +  G  DD  + + D+R  KP+   +    V  ++++  G +    + +GTV +    +
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST 401

Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240
              L  +  HT+    +   P G+  A GS+D+ + LWD+   L             ++S
Sbjct: 402 GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK------------SVS 449

Query: 241 FSHTGDYIASASEDL 255
           FS  G  +AS S DL
Sbjct: 450 FSPDGKVLASKSSDL 464

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 18  GHKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-----LRGHADSVDQ 71
           GH   +  + +N C    LASGS D T RVW I PH    VK+I+     L+GH   +  
Sbjct: 72  GHTSSILDLQFNPCFSEILASGSEDLTIRVWEI-PHNDESVKEIKDPQCILKGHKKKISI 130

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
           + W+P +  ++ ++  D  V +WD  + K + Q  +  +  ++ +   G  ++       
Sbjct: 131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKH 190

Query: 132 LTILDVRK 139
           + I+D RK
Sbjct: 191 MHIIDPRK 198

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48
          +   GH   V SVA++  G  LASGS D T ++W 
Sbjct: 6  KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 18/35 (51%), Positives = 20/35 (57%)

Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48
          R   GH   V SVA++  G  LASGS D T RVW 
Sbjct: 5  RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
           + L T+  HT     +A  P G   A GS D  V +WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95
           L+GH   V  + + P   +L+A+ S D TVR+WD
Sbjct: 6  TLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 180 SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
           S   L T+  HT     +A  P G+Y A GS D  + LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95
           L+GH   V  + + P     +A+ S D T++LWD
Sbjct: 7  TLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 15  EYTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
              GH KKV  V+++ +    LAS   D    VW +E    GK  ++ ++ H+D +  L 
Sbjct: 120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE---RGKAVEV-IKCHSDQITSLE 175

Query: 74  WDPKHADLIATASGDKTVRLWDARSGK--CSQQAELSG 109
           W+     L+ T S DK + + D R G    S +A  S 
Sbjct: 176 WNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 18  GHKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHG-HGKVKD--IELRGHADSVDQLC 73
           G +  +  VA+N     KL + S D T   W I   G    + D  + L+GH   V  + 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDEL 132
           + P   +++A+A  D  V +WD   GK  +  +  S +  ++ +  DG+ +   ++D +L
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 133 TILDVRK 139
            I+D R 
Sbjct: 193 NIIDPRD 199

Length = 493

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
            +  +GH   V S+AW+  G +LASGS D T R+W
Sbjct: 254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG2096	420	consensus WD40 repeat protein [General function pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
KOG2055	514	consensus WD40 repeat protein [General function pr	99.98
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG4328	498	consensus WD40 protein [Function unknown]	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.82
KOG1963	792	consensus WD40 repeat protein [General function pr	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.81
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.81
KOG1334	559	consensus WD40 repeat protein [General function pr	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.73
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.72
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.72
KOG2321	703	consensus WD40 repeat protein [General function pr	99.71
PRK03629	429	tolB translocation protein TolB; Provisional	99.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.7
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.7
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.69
KOG1188	376	consensus WD40 repeat protein [General function pr	99.69
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.68
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
PRK04922	433	tolB translocation protein TolB; Provisional	99.65
PRK04922	433	tolB translocation protein TolB; Provisional	99.65
PRK05137	435	tolB translocation protein TolB; Provisional	99.64
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.64
PRK02889	427	tolB translocation protein TolB; Provisional	99.64
KOG2321	703	consensus WD40 repeat protein [General function pr	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.63
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.62
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.62
KOG0649	325	consensus WD40 repeat protein [General function pr	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.61
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.61
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.61
KOG4227	609	consensus WD40 repeat protein [General function pr	99.6
KOG2139	445	consensus WD40 repeat protein [General function pr	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.56
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.55
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.52
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.51
KOG1310	758	consensus WD40 repeat protein [General function pr	99.5
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.49
PRK01029	428	tolB translocation protein TolB; Provisional	99.49
PRK01029	428	tolB translocation protein TolB; Provisional	99.49
PRK04792	448	tolB translocation protein TolB; Provisional	99.48
PRK04792	448	tolB translocation protein TolB; Provisional	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.47
KOG1334	559	consensus WD40 repeat protein [General function pr	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.45
KOG2315	566	consensus Predicted translation initiation factor	99.42
KOG4547	541	consensus WD40 repeat-containing protein [General	99.41
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.4
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.4
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.39
KOG2314	698	consensus Translation initiation factor 3, subunit	99.36
KOG2315	566	consensus Predicted translation initiation factor	99.35
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.32
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.29
KOG4547	541	consensus WD40 repeat-containing protein [General	99.27
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.26
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.26
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.25
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.25
PRK04043	419	tolB translocation protein TolB; Provisional	99.22
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.22
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.21
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.18
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.15
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.14
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.14
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.12
KOG2314	698	consensus Translation initiation factor 3, subunit	99.1
COG4946	668	Uncharacterized protein related to the periplasmic	99.1
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.07
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.05
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.05
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.04
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.03
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.03
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.02
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.02
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.01
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.97
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.96
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.95
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.93
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.92
COG4946	668	Uncharacterized protein related to the periplasmic	98.92
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.91
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.9
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.86
KOG2695	425	consensus WD40 repeat protein [General function pr	98.85
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.8
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.79
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.75
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.71
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.7
COG3391	381	Uncharacterized conserved protein [Function unknow	98.65
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.64
KOG2695	425	consensus WD40 repeat protein [General function pr	98.64
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.61
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.61
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.58
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.57
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.54
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.51
PRK02888	635	nitrous-oxide reductase; Validated	98.5
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.5
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.49
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.48
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.46
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.45
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.44
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.41
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.4
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.34
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.33
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.33
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.32
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.31
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.28
PRK02888	635	nitrous-oxide reductase; Validated	98.28
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.27
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.26
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.22
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.21
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.2
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.2
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.18
COG3391	381	Uncharacterized conserved protein [Function unknow	98.17
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.15
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.05
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.03
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.02
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.98
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.96
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.95
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.87
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.85
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.84
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.82
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.8
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.78
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.78
KOG3621	726	consensus WD40 repeat-containing protein [General	97.74
KOG3621	726	consensus WD40 repeat-containing protein [General	97.65
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.61
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.6
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.56
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.51
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.45
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.43
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.43
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.4
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.31
KOG2395	644	consensus Protein involved in vacuole import and d	97.3
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.29
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.29
KOG2444	238	consensus WD40 repeat protein [General function pr	97.23
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.2
KOG2395	644	consensus Protein involved in vacuole import and d	97.17
PRK13616	591	lipoprotein LpqB; Provisional	97.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.11
KOG2444	238	consensus WD40 repeat protein [General function pr	97.04
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.03
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.95
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.93
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.87
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.77
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.75
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.72
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.68
PRK13616	591	lipoprotein LpqB; Provisional	96.67
PHA02713	557	hypothetical protein; Provisional	96.66
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.66
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.6
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.47
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.46
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.16
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.15
PHA02713	557	hypothetical protein; Provisional	96.1
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.06
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.99
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.96
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.94
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.77
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.69
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.68
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.39
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.21
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.2
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.18
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.15
PHA03098	534	kelch-like protein; Provisional	94.9
PHA03098	534	kelch-like protein; Provisional	94.87
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.45
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.4
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.35
PHA02790	480	Kelch-like protein; Provisional	94.34
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.24
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.21
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.05
PRK13684	334	Ycf48-like protein; Provisional	94.04
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.74
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.69
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.46
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.14
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.99
COG5167	776	VID27 Protein involved in vacuole import and degra	92.93
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.82
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.71
PRK10115	686	protease 2; Provisional	92.7
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.15
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.97
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.94
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.91
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.25
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.99
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.91
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.6
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.44
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.39
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.29
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.22
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.17
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.0
COG5167	776	VID27 Protein involved in vacuole import and degra	89.98
PHA02790	480	Kelch-like protein; Provisional	89.95
KOG2247	615	consensus WD40 repeat-containing protein [General	89.57
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.47
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.19
KOG2247	615	consensus WD40 repeat-containing protein [General	89.18
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.93
COG5276	370	Uncharacterized conserved protein [Function unknow	88.45
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.41
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.25
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.1
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.96
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.75
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	87.68
PRK13684	334	Ycf48-like protein; Provisional	87.5
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	86.75
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	86.44
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	85.85
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.06
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	85.01
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	84.7
KOG3616	1636	consensus Selective LIM binding factor [Transcript	84.49
COG4590	733	ABC-type uncharacterized transport system, permeas	83.97
PF14727	418	PHTB1_N: PTHB1 N-terminus	83.83
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	83.29
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.07
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.66
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	82.2
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	81.67
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	81.59

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.3e-60  Score=361.69  Aligned_cols=309  Identities=57%  Similarity=1.052  Sum_probs=294.1

Q ss_pred             ccceeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEE
Q 021319            3 ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI   82 (314)
Q Consensus         3 ~~~~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l   82 (314)
                      +.-++++.+..+++.+|...|.+|+|+.+|..|++|+.|+++++|+++..  .........+|.+.|.+++|+|..++++
T Consensus         3 ~t~~~~~~l~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~--r~~~~~~~~gh~~svdql~w~~~~~d~~   80 (313)
T KOG1407|consen    3 ETLPKFKSLKRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD--RFRKELVYRGHTDSVDQLCWDPKHPDLF   80 (313)
T ss_pred             ccccchhhhhhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch--hhhhhhcccCCCcchhhheeCCCCCcce
Confidence            34567888888999999999999999999999999999999999999865  3345556789999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCC
Q 021319           83 ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (314)
Q Consensus        83 ~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      ++++.|.+|++||.+.+++....+..++.+.++|+|+|++++++..|..|...|.++.+.+...+....+..+.|+..++
T Consensus        81 atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd  160 (313)
T KOG1407|consen   81 ATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND  160 (313)
T ss_pred             EEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS  242 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  242 (314)
                      +|+...+.|.+.+..++..+|+..+..|+.+..||.|+|+|++||+|+.|..+.+||+....|++.+..+++||+.++||
T Consensus       161 ~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS  240 (313)
T KOG1407|consen  161 LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS  240 (313)
T ss_pred             EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcc-cccccceEEeccccC
Q 021319          243 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK-YQADEGVFRIYGFEN  313 (314)
Q Consensus       243 p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~-~~~~~~~~~~~~~~~  313 (314)
                      .+|++||+||+|..|.|=++.+|..++++++.++.+.|||||..++||++++|++- +..|.|++|||||.+
T Consensus       241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  241 HDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             cCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999987 678999999999976

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-48  Score=309.00  Aligned_cols=296  Identities=27%  Similarity=0.444  Sum_probs=246.5

Q ss_pred             Cccceeeeecc----ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC
Q 021319            2 GESSIPFKNLH----SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK   77 (314)
Q Consensus         2 ~~~~~~~~~~~----~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~   77 (314)
                      ||+-.+++++.    ..++.||...|.||+|+|||+.||||+.||+|++||..++.+   .-..++||...|.+|+|.|-
T Consensus       135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~---~g~~l~gH~K~It~Lawep~  211 (480)
T KOG0271|consen  135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ---IGRALRGHKKWITALAWEPL  211 (480)
T ss_pred             CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc---ccccccCcccceeEEeeccc
Confidence            44445666543    356789999999999999999999999999999999876432   23368899999999999874


Q ss_pred             C----CCEEEEEeCCCcEEEEeCCCCceeeeEEecC-ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcc
Q 021319           78 H----ADLIATASGDKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYE  151 (314)
Q Consensus        78 ~----~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~  151 (314)
                      +    ..+++|++.||+|+|||+..+.++.....+. .+.++.|--+ .++++|+.|++|++|+....+..+..+ +..-
T Consensus       212 hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahw  290 (480)
T KOG0271|consen  212 HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHW  290 (480)
T ss_pred             ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchh
Confidence            3    4589999999999999999998888765444 4456666544 489999999999999987754433322 2222


Q ss_pred             eeeE-----------EeccCC-------------------------CeEEEEcCCceEEEEeCC-CCCceeeeeecccce
Q 021319          152 VNEI-----------AWNMTG-------------------------EMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGC  194 (314)
Q Consensus       152 ~~~~-----------~~~~~~-------------------------~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~i  194 (314)
                      ++.+           +|.+.+                         +.+++++++.++.+|+-. ..+++..+.+|..-|
T Consensus       291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV  370 (480)
T KOG0271|consen  291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV  370 (480)
T ss_pred             eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence            3332           233333                         358999999999999864 445888889999999


Q ss_pred             EEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-c
Q 021319          195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-C  273 (314)
Q Consensus       195 ~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~  273 (314)
                      +.+.|+||++++|+++-|..|++||.++++.+.+|.+|-.+|..++|+.|.++|+|+|.|.++++|++.+.++...++ |
T Consensus       371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh  450 (480)
T KOG0271|consen  371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH  450 (480)
T ss_pred             eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988888888 7


Q ss_pred             cCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319          274 RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  309 (314)
Q Consensus       274 ~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~  309 (314)
                      ...|.+|.|+|+|...++||.||        ++|||
T Consensus       451 ~DEVf~vDwspDG~rV~sggkdk--------v~~lw  478 (480)
T KOG0271|consen  451 ADEVFAVDWSPDGQRVASGGKDK--------VLRLW  478 (480)
T ss_pred             CceEEEEEecCCCceeecCCCce--------EEEee
Confidence            88999999999999999999998        67787

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-46  Score=299.24  Aligned_cols=286  Identities=24%  Similarity=0.387  Sum_probs=247.1

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ...+.||.++|.|++|+|+|..|+||+.|.++|+||++++    .+....++|..-|.+++|+|++ ..|+||+.||+|+
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te----Tp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~  182 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE----TPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIR  182 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC----CcceeecCCccEEEEEEECCCc-chhhccccCCeEE
Confidence            3456799999999999999999999999999999999874    3555788999999999999985 6899999999999


Q ss_pred             EEeCCCCceeee-EE-ecCceEEEEEc-----cCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeE
Q 021319           93 LWDARSGKCSQQ-AE-LSGENINITYK-----PDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        93 iwd~~~~~~~~~-~~-~~~~~~~~~~~-----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  164 (314)
                      +||..+|++... +. +...+.+++|.     |..+.|++++.||+++|||+...+.+... -+..++.++.|--+ .++
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gli  261 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLI  261 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceE
Confidence            999998876532 22 23445677775     56789999999999999999887776553 56678999998643 477


Q ss_pred             EEEcCCceEEEEeCCCCCceeeeeecccceEEEEEC-----------CCCC-------------------------EEEE
Q 021319          165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID-----------PMGR-------------------------YFAV  208 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-----------~~~~-------------------------~l~t  208 (314)
                      ++++.|++|++|+....+....+.+|...|+.++.+           |.++                         .|++
T Consensus       262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS  341 (480)
T KOG0271|consen  262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS  341 (480)
T ss_pred             EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence            889999999999999988889999999999999876           3344                         4999


Q ss_pred             eeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCC
Q 021319          209 GSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKY  286 (314)
Q Consensus       209 ~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~  286 (314)
                      |+.|.++.+|+.... +++..+.+|..-|+.+.||||++++||||-|..|++|+..+|+.+..+. |-++|+.|+|+.|.
T Consensus       342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs  421 (480)
T KOG0271|consen  342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS  421 (480)
T ss_pred             ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence            999999999998654 4677888999999999999999999999999999999999999998887 67899999999999


Q ss_pred             CeeEEEecCCcccccccceEEecccc
Q 021319          287 NLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       287 ~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ++|+++|.|+        |+|+|++.
T Consensus       422 RLlVS~SkDs--------TLKvw~V~  439 (480)
T KOG0271|consen  422 RLLVSGSKDS--------TLKVWDVR  439 (480)
T ss_pred             cEEEEcCCCc--------eEEEEEee
Confidence            9999999985        88999874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.2e-46  Score=300.38  Aligned_cols=281  Identities=20%  Similarity=0.296  Sum_probs=252.9

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-CCCEEEEEeCCCcEEEEeC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDA   96 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~D~~v~iwd~   96 (314)
                      |-..+|..+.||.|++.|+|||.+|.++||++..-    .....+.||...|.++.|+|. ...-++||+.||++++|+.
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~----~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC----NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc----ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            44678999999999999999999999999998642    234578999999999999998 3567999999999999999


Q ss_pred             CCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCCceEE
Q 021319           97 RSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (314)
Q Consensus        97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  174 (314)
                      .+...+..++.+ ..+..++|+|+|++|++++.|.+-++||+++.+.+.. .-+...+.+++|+++|..+++++-|..-+
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R  328 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR  328 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence            887666655433 4566799999999999999999999999998765533 44677899999999999999999999999


Q ss_pred             EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc-CCcEEEEecC
Q 021319          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH-TGDYIASASE  253 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~s~  253 (314)
                      +||+++.+.+..+.+|..+|..++|+|+|..||||+.|++++|||++...++.++..|..-|+.|+|+| .|.+|+|+|.
T Consensus       329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy  408 (459)
T KOG0272|consen  329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY  408 (459)
T ss_pred             eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence            999999999999999999999999999999999999999999999999888999999999999999999 7899999999


Q ss_pred             CceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          254 DLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       254 d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      |+.+++|...++.+++.+. |.+.|-+++.+|++..+++++-|+        ++|+|-
T Consensus       409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR--------T~KLW~  458 (459)
T KOG0272|consen  409 DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR--------TIKLWR  458 (459)
T ss_pred             CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc--------eeeecc
Confidence            9999999999999998864 678999999999999999999886        788884

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-41  Score=262.76  Aligned_cols=286  Identities=16%  Similarity=0.262  Sum_probs=245.9

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      -..|+|.||.+.|+++.|++|+++|+|+|.||.+.|||.-+..  +..  .++-...-|-..+|+|.+ +++++|+.|..
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--K~h--aipl~s~WVMtCA~sPSg-~~VAcGGLdN~  120 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--KVH--AIPLPSSWVMTCAYSPSG-NFVACGGLDNK  120 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--cee--EEecCceeEEEEEECCCC-CeEEecCcCce
Confidence            3458899999999999999999999999999999999976532  222  233345668888999984 79999999999


Q ss_pred             EEEEeCCCC------ceeeeEEecCceEE-EEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEecc-CC
Q 021319           91 VRLWDARSG------KCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNM-TG  161 (314)
Q Consensus        91 v~iwd~~~~------~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~-~~  161 (314)
                      ..||++.+.      +..+++..+...++ +.|.+ ..+|++++.|.+..+||+++.+.+..+ -+...+.++..+| ++
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             eEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence            999999755      22333444444454 55554 778999999999999999999887765 3567899999999 89


Q ss_pred             CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec--ccCeEEE
Q 021319          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--EWPVRTI  239 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~  239 (314)
                      +.|++++.|...++|+.+.....+++.+|+..|+++.|.|+|.-+++|+.|++.|+||++..+.+..|...  ..+|.++
T Consensus       200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv  279 (343)
T KOG0286|consen  200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV  279 (343)
T ss_pred             CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999998888777643  4589999


Q ss_pred             EEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          240 SFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       240 ~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      +||-.|++|++|-.|..+.|||..+++....+. |.++|.++..+|||..+++||        ++.++|||.
T Consensus       280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgS--------WDs~lriW~  343 (343)
T KOG0286|consen  280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGS--------WDSTLRIWA  343 (343)
T ss_pred             EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecc--------hhHheeecC
Confidence            999999999999999999999999999888764 688999999999999999999        557999994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.5e-41  Score=263.70  Aligned_cols=282  Identities=23%  Similarity=0.379  Sum_probs=246.1

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      .+.||++.|+.+.|+|+|.+|+|||.|..|.+|++.... .  -...+++|+++|..+.|.++ ++.|+|+|.|++++.|
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-e--N~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-E--NFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVRGW  117 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-c--ceeeeccccceeEeeeeccC-CCEEEEecCCceEEEE
Confidence            467999999999999999999999999999999975322 1  23457799999999999987 4689999999999999


Q ss_pred             eCCCCceeeeEEecCceEE-EEEccCCC-EEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCce
Q 021319           95 DARSGKCSQQAELSGENIN-ITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT  172 (314)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  172 (314)
                      |.++|++.+....+...++ +.-..-|. .+.+++.|+++++||+|+...++..+..+++.++.|.-.+...++++-|+.
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence            9999999888777666554 33222343 556788899999999999988888888899999999999999999999999


Q ss_pred             EEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc----EEEEEeeecc----cCeEEEEEccC
Q 021319          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----LCVRTFTKLE----WPVRTISFSHT  244 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~----~~v~~~~~sp~  244 (314)
                      +++|+++....+..+.+|...|+.+..+++|.++.+-+-|.++++||++..    .|++.+.++.    .....++|+|+
T Consensus       198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~  277 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN  277 (338)
T ss_pred             eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence            999999988888999999999999999999999999999999999999753    4577776653    34677899999


Q ss_pred             CcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccc
Q 021319          245 GDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~  300 (314)
                      +..+..|+.|..+++||...-+.+.+++ |.+.|++++|+|..++|.+++.||.+|.
T Consensus       278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            9999999999999999998878888887 5679999999999999999999999983

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-39  Score=250.92  Aligned_cols=291  Identities=20%  Similarity=0.298  Sum_probs=243.3

Q ss_pred             ccceeeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCC-ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC
Q 021319           11 LHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D   88 (314)
                      ...-+|.||++.|+.++-.+.+ +.+++++.|+++.+|++...... -.+...+.||+..|..+..+++ +++.+|++.|
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD   84 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWD   84 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC-CceEEecccc
Confidence            3445689999999999998884 67999999999999999754321 1334578999999999999987 5789999999


Q ss_pred             CcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEeccC--CCe
Q 021319           89 KTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMT--GEM  163 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~--~~~  163 (314)
                      +++|+||+.+++..+++..+ ....+++|++|.+.+++|+.|.+|++|+............  ..-+.++.|+|.  ...
T Consensus        85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence            99999999999877776554 4567899999999999999999999999876554433333  345899999999  678


Q ss_pred             EEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc
Q 021319          164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH  243 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp  243 (314)
                      ++.++.|+++++|++...+....+.+|.+-++.++++|||...++|+.||.+.+||++.++++..+ .+...|.+++|+|
T Consensus       165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fsp  243 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSP  243 (315)
T ss_pred             EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecC
Confidence            888999999999999999988899999999999999999999999999999999999999998776 4566899999999


Q ss_pred             CCcEEEEecCCceEEEEECCCCCeEEEEecc----------CccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          244 TGDYIASASEDLFIDISNVHTGRTVHQIPCR----------AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~----------~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +...|+.+... .|+|||..+++.+..+...          ....+++|+++|..|..+-.|        |.+|+|.+-
T Consensus       244 nrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td--------~~irv~qv~  313 (315)
T KOG0279|consen  244 NRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD--------NVIRVWQVA  313 (315)
T ss_pred             CceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC--------CcEEEEEee
Confidence            88777755544 4999999998877665421          125688999999999877766        689999764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.1e-40  Score=269.64  Aligned_cols=276  Identities=29%  Similarity=0.476  Sum_probs=245.7

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~  100 (314)
                      ..|++|+|+.+|..||+|+.||.+|||+...    . ....+..|+++|.++.|+.. +++|++++.|+++.+||..++.
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~-l~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG----N-LISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCc----h-hhhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCce
Confidence            5799999999999999999999999998753    1 12257789999999999976 5799999999999999999999


Q ss_pred             eeeeEEecCce-EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeC
Q 021319          101 CSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (314)
Q Consensus       101 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (314)
                      +.++++++... +.+.|..+ ..+++.+.|+.|.++.+....|+.+.. +..++..+.|.|.+.++++++.|+++++|..
T Consensus       310 ~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  310 VKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM  388 (524)
T ss_pred             EEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence            98888887766 66777644 567888899999999988877776643 5678999999999999999999999999999


Q ss_pred             CCCCceeeeeecccceEEEEECCCC---------CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEE
Q 021319          179 PSLRPLDTVVAHTAGCYCIAIDPMG---------RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA  249 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~i~~~~~~---------~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  249 (314)
                      ........+.+|+.+|+.+.|+|+|         ..+++++.|++|++||+..+.++.+|.+|..||.+++|+|+|+|+|
T Consensus       389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence            8888888899999999999999875         4799999999999999999999999999999999999999999999


Q ss_pred             EecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          250 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       250 s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +|+.|+.|++|+..+++.++.+...+.|..|.||-+|..|..+-.|        |.+++-+|
T Consensus       469 sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd--------~~vcvldl  522 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD--------GSVCVLDL  522 (524)
T ss_pred             ecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecC--------CCceEEEe
Confidence            9999999999999999999998878889999999999888766666        45666665

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-41  Score=270.02  Aligned_cols=296  Identities=23%  Similarity=0.363  Sum_probs=242.6

Q ss_pred             ccceeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEE
Q 021319            3 ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI   82 (314)
Q Consensus         3 ~~~~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l   82 (314)
                      +..+|+++.  +.+..|.++|..+.||++|++|||++.|.+.-||.+..... -....++.+|..+|.-+.|+|++ .++
T Consensus       209 ~~qip~qt~--qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDd-ryL  284 (519)
T KOG0293|consen  209 RLQIPSQTW--QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDD-RYL  284 (519)
T ss_pred             cccCCchhh--hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCC-CeE
Confidence            344666544  45688999999999999999999999999999999865432 22345788999999999999986 578


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeEEec--CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec--cCcceeeEEec
Q 021319           83 ATASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWN  158 (314)
Q Consensus        83 ~s~~~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~  158 (314)
                      ++|+.|..+++||..+|.+.......  ....+++|.|||..+++|+.|+.+..||+.... +...+  -...+.+++..
T Consensus       285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait  363 (519)
T KOG0293|consen  285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAIT  363 (519)
T ss_pred             EecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEc
Confidence            89999999999999999887665443  456789999999999999999999999986432 11111  12458899999


Q ss_pred             cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC--e
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP--V  236 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--v  236 (314)
                      ++|+.+++.+.+..+++|+........ +.....+++++.+|.+++++.+.=.+..+++||+...+.++++.+|+..  +
T Consensus       364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fi  442 (519)
T KOG0293|consen  364 YDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFI  442 (519)
T ss_pred             CCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceE
Confidence            999999999999999999886554332 2334567999999999999999999999999999998888888888753  3


Q ss_pred             EEEEEc-cCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCC-CCeeEEEecCCcccccccceEEecccc
Q 021319          237 RTISFS-HTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPK-YNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       237 ~~~~~s-p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~-~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      -.-||- .+..++||||+|+.|+||+..+|+++..++ |...|++|+|||. ..|||+||+|        |++||||..
T Consensus       443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD--------gtIRIWg~~  513 (519)
T KOG0293|consen  443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD--------GTIRIWGPS  513 (519)
T ss_pred             EEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC--------CeEEEecCC
Confidence            334565 345899999999999999999999999887 4668999999995 5789999977        799999985

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2e-39  Score=265.57  Aligned_cols=287  Identities=25%  Similarity=0.409  Sum_probs=242.0

Q ss_pred             eeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEe------ec----CCCCEEEEEEcCCCCCEE
Q 021319           14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIEL------RG----HADSVDQLCWDPKHADLI   82 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~------~~----h~~~v~~l~~~~~~~~~l   82 (314)
                      +.+. |+++|.+++|+|-.. .+++++.|-+.|+|++............+      .+    -+..|++|+|+.+ +++|
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~L  250 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLL  250 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeE
Confidence            3444 999999999999887 89999999999999986422111111111      12    2356999999976 5799


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC-cceeeEEeccCC
Q 021319           83 ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTG  161 (314)
Q Consensus        83 ~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~  161 (314)
                      ++|+.||.+|||+............+++++++.|+..|.+|++++.|+++.+||..+.......... .+.-.+.|- ..
T Consensus       251 atG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~-~~  329 (524)
T KOG0273|consen  251 ATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ-SN  329 (524)
T ss_pred             EEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-cC
Confidence            9999999999999976665555567888999999999999999999999999999887665554433 233567774 44


Q ss_pred             CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEE
Q 021319          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF  241 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  241 (314)
                      ..|+++..++.++++.....+|..++.+|.++|.++.|+|.|.+|++++.|+++++|.+.+..+...+..|...|..+.|
T Consensus       330 ~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w  409 (524)
T KOG0273|consen  330 DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW  409 (524)
T ss_pred             ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence            56888899999999999999999999999999999999999999999999999999999988888888899999999999


Q ss_pred             ccCC---------cEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          242 SHTG---------DYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       242 sp~~---------~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +|.|         ..+++++.|+.|++||+..|.++..+ .|..+|++|+|+|++.++|+|+.|+        -+.||+.
T Consensus       410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg--------~V~iws~  481 (524)
T KOG0273|consen  410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG--------CVHIWST  481 (524)
T ss_pred             cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC--------eeEeccc
Confidence            9976         47999999999999999999999997 7889999999999999999999995        5667765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.3e-41  Score=270.04  Aligned_cols=246  Identities=23%  Similarity=0.311  Sum_probs=222.8

Q ss_pred             ccceeeecccccEEEEEECCC--CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC
Q 021319           11 LHSREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~--g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D   88 (314)
                      ....+|.||.+.|.++.|+|.  +..++||+.||++++|+++..    ..-..+.+|...|..++|+|++ .+|+|++-|
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e----~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD  282 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE----TPLQDLEGHLARVSRVAFHPSG-KFLGTASFD  282 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC----cchhhhhcchhhheeeeecCCC-ceeeecccc
Confidence            356778999999999999998  568999999999999998742    2334688999999999999985 799999999


Q ss_pred             CcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEE
Q 021319           89 KTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .+-|+||++++.-....+.+ ..+.+++|.+||.++++|+.|..-+|||+|+.+.+... .+..++..++|+|+|-.+++
T Consensus       283 ~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lAT  362 (459)
T KOG0272|consen  283 STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLAT  362 (459)
T ss_pred             cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEee
Confidence            99999999998755544443 45568999999999999999999999999999887654 35678999999999999999


Q ss_pred             EcCCceEEEEeCCCCCceeeeeecccceEEEEECC-CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCC
Q 021319          167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG  245 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~  245 (314)
                      ++.|+++++|+++..+.+.++.+|..-|+.+.|+| .|.+|+|++.|+++++|..+++.+++.+.+|+..|.+++++|++
T Consensus       363 gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~  442 (459)
T KOG0272|consen  363 GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS  442 (459)
T ss_pred             cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence            99999999999999999999999999999999998 78899999999999999999999999999999999999999999


Q ss_pred             cEEEEecCCceEEEEE
Q 021319          246 DYIASASEDLFIDISN  261 (314)
Q Consensus       246 ~~l~s~s~d~~v~v~~  261 (314)
                      ++++|+|.|.++++|.
T Consensus       443 ~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  443 QAIATSSFDRTIKLWR  458 (459)
T ss_pred             ceEEEeccCceeeecc
Confidence            9999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.9e-38  Score=238.35  Aligned_cols=274  Identities=20%  Similarity=0.323  Sum_probs=231.2

Q ss_pred             ceeeeec----cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCC
Q 021319            5 SIPFKNL----HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD   80 (314)
Q Consensus         5 ~~~~~~~----~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~   80 (314)
                      -|+|+..    +.+++.-..+.|+.++..||++.||+++. ..||+||+.+....  +...+.+|...|.++.|..+ +.
T Consensus        21 TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--Pv~t~e~h~kNVtaVgF~~d-gr   96 (311)
T KOG0315|consen   21 TIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--PVATFEGHTKNVTAVGFQCD-GR   96 (311)
T ss_pred             eeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--ceeEEeccCCceEEEEEeec-Ce
Confidence            3566653    45666544678999999999999999985 78999999875433  55678899999999999876 57


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee--ccCcceeeEEec
Q 021319           81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWN  158 (314)
Q Consensus        81 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~  158 (314)
                      ++++||.||++||||++.-.+.+.+.....+..+..+|+...|++|..+|.|++||++.....+..  +....+.++...
T Consensus        97 WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~  176 (311)
T KOG0315|consen   97 WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM  176 (311)
T ss_pred             EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc
Confidence            999999999999999999888888888888888999999999999999999999999876433222  234578899999


Q ss_pred             cCCCeEEEEcCCceEEEEeCCC------CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-EEEEEeee
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPS------LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTK  231 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~  231 (314)
                      ++|..++++...|+.++|++..      .+|+.++..|++-+..+.+||++++||++++|.+++||+.++. +....+++
T Consensus       177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g  256 (311)
T KOG0315|consen  177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG  256 (311)
T ss_pred             CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence            9999999999999999998753      4567778899999999999999999999999999999999988 44466778


Q ss_pred             cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEE
Q 021319          232 LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEW  282 (314)
Q Consensus       232 ~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~  282 (314)
                      |..-+..++||.||+||+|||.|+.+++|++..++.++++. |...-.+++.
T Consensus       257 h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  257 HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             CCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence            88889999999999999999999999999999999888875 3334444544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.8e-37  Score=255.86  Aligned_cols=284  Identities=29%  Similarity=0.483  Sum_probs=245.8

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      +.+.+|.++|++++|+|++++|++++.|+.+++|++....    ....+.+|...+..+.|.|++ +.+++++.|+.|++
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i   77 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRL   77 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEE
Confidence            4577999999999999999999999999999999987532    234567899999999999875 68899999999999


Q ss_pred             EeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCc
Q 021319           94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNG  171 (314)
Q Consensus        94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g  171 (314)
                      ||+.+++........ ..+.++.|.++++++++++.++.+.+||+++.+...... +...+.++.|++++..++++..++
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  157 (289)
T cd00200          78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG  157 (289)
T ss_pred             EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence            999987655555433 356789999998888888889999999999877776655 455789999999988888888799


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  251 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  251 (314)
                      .+.+|+....++...+..|...+.+++++|+++.+++++.++.|++||+..+..+..+..+..++.+++|+|++.+++++
T Consensus       158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  237 (289)
T cd00200         158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG  237 (289)
T ss_pred             cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence            99999998888788888888899999999999999999999999999999888888887788899999999999999999


Q ss_pred             cCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          252 SEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       252 s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      +.|+.+.+|+..+++.+..+. +...+.+++|+|+++.|++++.|        |.++||+
T Consensus       238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iw~  289 (289)
T cd00200         238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD--------GTIRIWD  289 (289)
T ss_pred             cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC--------CeEEecC
Confidence            999999999999888877765 45689999999999999999977        5788885

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.1e-37  Score=290.13  Aligned_cols=287  Identities=17%  Similarity=0.271  Sum_probs=236.4

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC----ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG----KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      .+.+|.+.|.+++|+|+|++|+|||.|+.|+||+.+.....    ......+. +...+.+++|++..+.+|++++.|++
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence            45569999999999999999999999999999997532110    11122233 34678999999876789999999999


Q ss_pred             EEEEeCCCCceeeeEEe-cCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEec-cCCCeEEEE
Q 021319           91 VRLWDARSGKCSQQAEL-SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN-MTGEMFFLT  167 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  167 (314)
                      |++||+.+++....+.. ...+.+++|+| ++.+|++++.|+.+++||+++.+.+........+.++.|+ +++..++++
T Consensus       557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence            99999998877666543 34567899996 7899999999999999999988877776666678888885 568999999


Q ss_pred             cCCceEEEEeCCCCC-ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC------cEEEEEeeecccCeEEEE
Q 021319          168 TGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~------~~~~~~~~~~~~~v~~~~  240 (314)
                      +.+|.+++|+....+ ++..+.+|...|.++.|. ++.++++++.|+.|++||+..      ...+..+.+|...+..++
T Consensus       637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~  715 (793)
T PLN00181        637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG  715 (793)
T ss_pred             eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence            999999999997654 566778899999999997 678999999999999999974      356778888998999999


Q ss_pred             EccCCcEEEEecCCceEEEEECCCCCeEEEEe--------------ccCccceeEEcCCCCeeEEEecCCcccccccceE
Q 021319          241 FSHTGDYIASASEDLFIDISNVHTGRTVHQIP--------------CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF  306 (314)
Q Consensus       241 ~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~--------------~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~  306 (314)
                      |+|++.+||+|+.|+.|++|+...+.++..+.              +...|++++|+|++.+|++|+.|        |++
T Consensus       716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d--------G~I  787 (793)
T PLN00181        716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST--------GNI  787 (793)
T ss_pred             EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC--------CcE
Confidence            99999999999999999999987665442221              12358999999999999999977        689


Q ss_pred             Eeccc
Q 021319          307 RIYGF  311 (314)
Q Consensus       307 ~~~~~  311 (314)
                      +||++
T Consensus       788 ~i~~~  792 (793)
T PLN00181        788 KILEM  792 (793)
T ss_pred             EEEec
Confidence            99975

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.1e-37  Score=255.97  Aligned_cols=292  Identities=23%  Similarity=0.342  Sum_probs=228.9

Q ss_pred             ceeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee---cCCCCEEEEEEcCCCCCE
Q 021319            5 SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPKHADL   81 (314)
Q Consensus         5 ~~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~   81 (314)
                      ++|||-..  .+..|...|+|+.|+|||++++|+|.||++.+||=.+.+    +..++.   +|++.|++++|+|+. ..
T Consensus       177 GPPFKFk~--s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge----~vg~l~~~~aHkGsIfalsWsPDs-~~  249 (603)
T KOG0318|consen  177 GPPFKFKS--SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE----KVGELEDSDAHKGSIFALSWSPDS-TQ  249 (603)
T ss_pred             CCCeeeee--cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----EEEEecCCCCccccEEEEEECCCC-ce
Confidence            46776533  346799999999999999999999999999999855432    222444   899999999999985 67


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeEEec--------------------------------------------CceEEEEEc
Q 021319           82 IATASGDKTVRLWDARSGKCSQQAELS--------------------------------------------GENINITYK  117 (314)
Q Consensus        82 l~s~~~D~~v~iwd~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~  117 (314)
                      ++|+|.|.++||||+.+..++++..+.                                            ..+.+++.+
T Consensus       250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~  329 (603)
T KOG0318|consen  250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS  329 (603)
T ss_pred             EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc
Confidence            889999999999999877655432211                                            122346678


Q ss_pred             cCCCEEEEEeCCCcEEEEEccCCeE-------------------------------eee---------------------
Q 021319          118 PDGTHIAVGNRDDELTILDVRKFKP-------------------------------IHR---------------------  145 (314)
Q Consensus       118 ~~~~~l~~~~~d~~i~i~d~~~~~~-------------------------------~~~---------------------  145 (314)
                      +++++|++|+.||.|.-||..+...                               ++.                     
T Consensus       330 ~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~  409 (603)
T KOG0318|consen  330 PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK  409 (603)
T ss_pred             CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence            9999999999999999998753210                               000                     


Q ss_pred             ------------------------------eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC--ceeeeeecccc
Q 021319          146 ------------------------------RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--PLDTVVAHTAG  193 (314)
Q Consensus       146 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~  193 (314)
                                                    +...+...+++.+|+++.+++++.|+.+++|.+....  .......|.++
T Consensus       410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~  489 (603)
T KOG0318|consen  410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA  489 (603)
T ss_pred             eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC
Confidence                                          0011234567889999999999999999999987644  33456689999


Q ss_pred             eEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE-EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319          194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV-RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       194 i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      +++++++||+.|||+|+..+.+.+||+.+.+.. ....-|...|.+++|+|+..++||||.|-.|.||++.+......++
T Consensus       490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik  569 (603)
T KOG0318|consen  490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK  569 (603)
T ss_pred             ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec
Confidence            999999999999999999999999999887663 2334488899999999999999999999999999998754433332


Q ss_pred             --ccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          273 --CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       273 --~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                        |...|++|+|- +.+.++++|.|.        .+|+|+++
T Consensus       570 nAH~~gVn~v~wl-de~tvvSsG~Da--------~iK~W~v~  602 (603)
T KOG0318|consen  570 NAHLGGVNSVAWL-DESTVVSSGQDA--------NIKVWNVT  602 (603)
T ss_pred             cccccCceeEEEe-cCceEEeccCcc--------eeEEeccc
Confidence              45569999998 466778899886        58999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7e-39  Score=277.37  Aligned_cols=245  Identities=27%  Similarity=0.455  Sum_probs=206.8

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCC---------C------------------CceeeEEeecCCCCEEEE
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---------H------------------GKVKDIELRGHADSVDQL   72 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~---------~------------------~~~~~~~~~~h~~~v~~l   72 (314)
                      ...++|..|++|++.||.|-.|..|++|.+.+..         .                  .......+.||.++|...
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            3579999999999999999999999999986310         0                  011223578999999999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcce
Q 021319           73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV  152 (314)
Q Consensus        73 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  152 (314)
                      .|+|+. ++|+|+|.|+++|+|.+.+..+......+                                        ..++
T Consensus       458 sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH----------------------------------------~~PV  496 (707)
T KOG0263|consen  458 SFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGH----------------------------------------LAPV  496 (707)
T ss_pred             eecccc-cceeeccCCcceeeeecccceeEEEecCC----------------------------------------Ccce
Confidence            999984 68999999999999999876654433221                                        2344


Q ss_pred             eeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec
Q 021319          153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~  232 (314)
                      .++.|+|.|-+|++++.|++.++|......|++.+.+|-..+.|++|+|+..|+|+|+.|.+||+||+.++..++.|.+|
T Consensus       497 wdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH  576 (707)
T KOG0263|consen  497 WDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH  576 (707)
T ss_pred             eeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC
Confidence            55556666777777777777777777777788888999999999999999999999999999999999999999999999


Q ss_pred             ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      ..+|.+++|||+|++||||++|+.|.+||..+|+++.++ .|.+.|+++.|+++|+.||++|.|        ..+++|||
T Consensus       577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D--------nsV~lWD~  648 (707)
T KOG0263|consen  577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD--------NSVRLWDL  648 (707)
T ss_pred             CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCC--------CeEEEEEc
Confidence            999999999999999999999999999999999988775 467899999999999999999988        47999998


Q ss_pred             cC
Q 021319          312 EN  313 (314)
Q Consensus       312 ~~  313 (314)
                      .+
T Consensus       649 ~~  650 (707)
T KOG0263|consen  649 TK  650 (707)
T ss_pred             hh
Confidence            54

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-36  Score=232.37  Aligned_cols=287  Identities=26%  Similarity=0.435  Sum_probs=229.0

Q ss_pred             eccceeeecccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCceee-EEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319           10 NLHSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASG   87 (314)
Q Consensus        10 ~~~~~~~~gH~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~   87 (314)
                      .+..+.+.||+++|..++|+|- |..|+|||.|+.||||+..... ..... .--.+|+..|..++|+|.+ ++|+++|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSF   81 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-SWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASF   81 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-cEEEEEeccccchheeeeeeecCCC-cEEEEeec
Confidence            4567889999999999999998 8899999999999999986411 22221 1224899999999999985 69999999


Q ss_pred             CCcEEEEeCCCCc--eeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe---Eeeee-ccCcceeeEEeccC
Q 021319           88 DKTVRLWDARSGK--CSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFK---PIHRR-KFGYEVNEIAWNMT  160 (314)
Q Consensus        88 D~~v~iwd~~~~~--~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~-~~~~~~~~~~~~~~  160 (314)
                      |.++-||--..+.  |+..++. +.+..+++|+++|++||++++|.++-+|......   ..... .+.+.+..+.|+|.
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence            9999999766554  4444443 3456689999999999999999999999876432   22222 35567899999999


Q ss_pred             CCeEEEEcCCceEEEEeCCC---CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-ecccCe
Q 021319          161 GEMFFLTTGNGTVEVLTYPS---LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPV  236 (314)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v  236 (314)
                      ..++++++.|++|++|....   -....++.+|+..+.+++|++.|..|++++.|++++||.....     +. -|..++
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~  236 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRAL  236 (312)
T ss_pred             cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccce
Confidence            99999999999999998652   3467788899999999999999999999999999999985422     11 255788


Q ss_pred             EEEEEccCCcEEEEecCCceEEEEECCCC------CeEE--EEeccCccceeEEcCC-CCeeEEEecCCcccccccceEE
Q 021319          237 RTISFSHTGDYIASASEDLFIDISNVHTG------RTVH--QIPCRAAMNSVEWNPK-YNLLAYAGDDKNKYQADEGVFR  307 (314)
Q Consensus       237 ~~~~~sp~~~~l~s~s~d~~v~v~~~~~~------~~~~--~~~~~~~i~~v~~~~~-~~~la~~~~d~~~~~~~~~~~~  307 (314)
                      ..++|.  ...|||++.|+.|+++.-..+      +++.  ...|...||+|.|+|. .+.|+++|+|        |+++
T Consensus       237 Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD--------G~v~  306 (312)
T KOG0645|consen  237 YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD--------GIVN  306 (312)
T ss_pred             Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC--------ceEE
Confidence            889997  778999999999999975532      1111  1224568999999995 6888999977        7999


Q ss_pred             eccccC
Q 021319          308 IYGFEN  313 (314)
Q Consensus       308 ~~~~~~  313 (314)
                      +|-|+.
T Consensus       307 ~W~l~~  312 (312)
T KOG0645|consen  307 FWELEI  312 (312)
T ss_pred             EEEecC
Confidence            998863

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.4e-38  Score=248.94  Aligned_cols=281  Identities=22%  Similarity=0.353  Sum_probs=244.7

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      +.||...|+.+-|+|+-...++++.|.+|++||..++..    ...++||.++|.+++|+..+ .++++++.|-.+++||
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~----e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL----ERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWD  178 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhh----hhhhhccccceeEEEEecCc-cEEEecCCccchhhee
Confidence            578999999999999999999999999999999987542    34588999999999999764 7999999999999999


Q ss_pred             CCC-CceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEEEcCCce
Q 021319           96 ARS-GKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNGT  172 (314)
Q Consensus        96 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~  172 (314)
                      ..+ .+|.+.... +..+.+++|.|.|.++++++.|.+|+.|++.+.-.+.+... ..-+..+..+.+|..+++++.+.+
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt  258 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT  258 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence            876 344444333 33455789999999999999999999999999888877654 345778888899999999999999


Q ss_pred             EEEEeCCCCCceeeeeecccceEEEEECCC---------------CCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeE
Q 021319          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPM---------------GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR  237 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---------------~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  237 (314)
                      +++|-....++...+..|+.++.|++|-|.               +.++++++.|++|++||+.++.|+.++.+|+.-|.
T Consensus       259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR  338 (406)
T ss_pred             EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence            999999888777888899999999998543               35899999999999999999999999999999999


Q ss_pred             EEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319          238 TISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  309 (314)
Q Consensus       238 ~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~  309 (314)
                      .++|+|.|+||+|+.+|+.++|||+.+++..+.+.. ..-+++++|+.+-+++++|+-|.        ++|+|
T Consensus       339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq--------t~Kvw  403 (406)
T KOG0295|consen  339 GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ--------TVKVW  403 (406)
T ss_pred             eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc--------eeeee
Confidence            999999999999999999999999999888877653 44699999999999999999885        57776

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.6e-39  Score=259.83  Aligned_cols=273  Identities=18%  Similarity=0.319  Sum_probs=238.3

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      +..|..|.|.|+|..|++|+..|.+.+|+.....    -...+..|..+|.++.|+++ +.+++||+.+|.|++|+..-.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn----FEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN----FETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceee----HHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEecccchh
Confidence            3489999999999999999999999999864321    12246789999999999987 479999999999999998654


Q ss_pred             ceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319          100 KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (314)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (314)
                      .+......+ ..+..++|+|....+++++.|++|+|||.+..++... .-++..+.++.|+|....+++++.|..|++||
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence            433332233 5566899999999999999999999999988776444 34678899999999999999999999999999


Q ss_pred             CCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC-CcEEEEecCCce
Q 021319          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-GDYIASASEDLF  256 (314)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~d~~  256 (314)
                      -++..++.++.+|...|..+.|+|++.+|++++.|..++++|++.++.+..+.+|+..|.++.|+|- ..+|.+|+.||.
T Consensus       251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs  330 (464)
T KOG0284|consen  251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS  330 (464)
T ss_pred             CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999996 578889999999


Q ss_pred             EEEEECCCCCeEEEEe--ccCccceeEEcCCCCeeEEEecCCc
Q 021319          257 IDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       257 v~v~~~~~~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      |..|.+...+++..++  |.+.|.+++|||-|.+|++|+.|++
T Consensus       331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t  373 (464)
T KOG0284|consen  331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT  373 (464)
T ss_pred             eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcc
Confidence            9999998666666654  5678999999999999999998873

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=9.6e-39  Score=262.43  Aligned_cols=287  Identities=20%  Similarity=0.384  Sum_probs=243.8

Q ss_pred             cceeeecccccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           12 HSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      .+..+.||+..|+++.|.| .+.+|+|||.|+.|+||++-..   ......+.||..+|.+++|++.+ ..++|+|-|++
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~  281 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRF  281 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccC-Ceeeeeeccee
Confidence            4567899999999999999 8999999999999999998642   22334688999999999999875 57789999999


Q ss_pred             EEEEeCCCCceeeeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEc
Q 021319           91 VRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT  168 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  168 (314)
                      +++||..+|++...+.......++.|.|++ +.+++|+.|+.|..||+|+.+.++.+. +-..+..+.|-+.+..+++++
T Consensus       282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            999999999999999888888999999998 888999999999999999998777664 346788999999999999999


Q ss_pred             CCceEEEEeCCCCCceeeee-ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE---EEEeeeccc--CeEEEEEc
Q 021319          169 GNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---VRTFTKLEW--PVRTISFS  242 (314)
Q Consensus       169 ~~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~~~~~--~v~~~~~s  242 (314)
                      +++.+++|+.....++.... .+.....|+..+|++.+++.-+.|..|.++.+.....   .+.+++|..  --..+.||
T Consensus       362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS  441 (503)
T KOG0282|consen  362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS  441 (503)
T ss_pred             cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence            99999999987766554432 3344578999999999999999999999998764433   245666643  35568899


Q ss_pred             cCCcEEEEecCCceEEEEECCCCCeEEEEecc-CccceeEEcCCC-CeeEEEecCCcccccccceEEecc
Q 021319          243 HTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       243 p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~-~~i~~v~~~~~~-~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      |||++|+||+.||.+.+||..+.+.+..++.. ..+..+.|||.. .-+|++|-        +|-||||+
T Consensus       442 pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w--------~G~Ikiwd  503 (503)
T KOG0282|consen  442 PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGW--------DGLIKIWD  503 (503)
T ss_pred             CCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEeccc--------CceeEecC
Confidence            99999999999999999999999988887754 789999999964 66788884        47899995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.5e-36  Score=229.09  Aligned_cols=267  Identities=17%  Similarity=0.228  Sum_probs=218.9

Q ss_pred             CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce--eeeEEec-C
Q 021319           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC--SQQAELS-G  109 (314)
Q Consensus        33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--~~~~~~~-~  109 (314)
                      -+|+|+|+|-+||+|...++.    ....++-....|+.|...|++ ..|+++ ....||+||++++..  +..++.. .
T Consensus        11 viLvsA~YDhTIRfWqa~tG~----C~rTiqh~dsqVNrLeiTpdk-~~LAaa-~~qhvRlyD~~S~np~Pv~t~e~h~k   84 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGI----CSRTIQHPDSQVNRLEITPDK-KDLAAA-GNQHVRLYDLNSNNPNPVATFEGHTK   84 (311)
T ss_pred             eEEEeccCcceeeeeehhcCe----EEEEEecCccceeeEEEcCCc-chhhhc-cCCeeEEEEccCCCCCceeEEeccCC
Confidence            379999999999999987643    223444445679999999985 455555 457999999998865  3444443 5


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee-
Q 021319          110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-  188 (314)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-  188 (314)
                      ++..+.|..+|+++++|+.||+++|||+|.....+.+++..+++++..+|....++++..+|.|++||+........+. 
T Consensus        85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP  164 (311)
T KOG0315|consen   85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP  164 (311)
T ss_pred             ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence            6678999999999999999999999999998777778888999999999999999999999999999997664444433 


Q ss_pred             ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc------EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       189 ~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      .....+.++.+.|||++|+.+...|...+|++...      ..+.+++.|...+..+.+||++++||++|.|..++||+.
T Consensus       165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence            23457899999999999999999999999998542      345667888889999999999999999999999999999


Q ss_pred             CCC-CeEEEEec-cCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          263 HTG-RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       263 ~~~-~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      .+- +.-..+.. ..-+-..+||.++.+|+||+.|        +++|+|+++.
T Consensus       245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd--------~~~rlW~~~~  289 (311)
T KOG0315|consen  245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD--------HTARLWDLSA  289 (311)
T ss_pred             CCceeeEEEeecCCceEEeeeeccCccEEEecCCC--------Cceeeccccc
Confidence            876 22233332 3468899999999999999988        5899999864

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=9.4e-36  Score=228.13  Aligned_cols=287  Identities=21%  Similarity=0.325  Sum_probs=234.9

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      ..+.||..+++.+.|+.+|++|.||+.|.+..||-...+   .+. -.+.||.++|.++..+-+ ...+++|+.|.++++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erl-Gty~GHtGavW~~Did~~-s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERL-GTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKL   78 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---cee-eeecCCCceEEEEEecCC-cceeeeccccceeEE
Confidence            347899999999999999999999999999999976432   222 257899999999998765 578999999999999


Q ss_pred             EeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-----CCcEEEEEccC-------CeEeeeecc-CcceeeEEeccC
Q 021319           94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-----DDELTILDVRK-------FKPIHRRKF-GYEVNEIAWNMT  160 (314)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~-------~~~~~~~~~-~~~~~~~~~~~~  160 (314)
                      ||+.+|+++.+.+.......+.|+++|++++....     .+.|.++|++.       ..|...+.. ...+....|.|-
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence            99999999999998888889999999999887764     34689999884       334444332 345778889999


Q ss_pred             CCeEEEEcCCceEEEEeCCCCC-ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEE
Q 021319          161 GEMFFLTTGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI  239 (314)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  239 (314)
                      ++.++.+.++|.+..|+....+ .+..-..|+..|+.+.++++.+++++++.|.+-++||+++..+++++. .+.||++.
T Consensus       159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~a  237 (327)
T KOG0643|consen  159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTA  237 (327)
T ss_pred             CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccce
Confidence            9999999999999999998754 455557799999999999999999999999999999999999999985 56799999


Q ss_pred             EEccCCcEEEEecCCceEEEEEC--CCCCe------------EEEE-eccCccceeEEcCCCCeeEEEecCCcccccccc
Q 021319          240 SFSHTGDYIASASEDLFIDISNV--HTGRT------------VHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG  304 (314)
Q Consensus       240 ~~sp~~~~l~s~s~d~~v~v~~~--~~~~~------------~~~~-~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~  304 (314)
                      +++|....++.|+......|--.  +.|+-            +..+ .|=++||+|||||+|+..++||+|        |
T Consensus       238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED--------G  309 (327)
T KOG0643|consen  238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED--------G  309 (327)
T ss_pred             ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCC--------c
Confidence            99999888887765433333322  22321            1111 234789999999999999999966        7


Q ss_pred             eEEeccccCC
Q 021319          305 VFRIYGFENA  314 (314)
Q Consensus       305 ~~~~~~~~~~  314 (314)
                      .+||..|+.+
T Consensus       310 ~VR~h~Fd~~  319 (327)
T KOG0643|consen  310 YVRLHHFDSN  319 (327)
T ss_pred             eEEEEEeccc
Confidence            9999999754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.7e-36  Score=237.94  Aligned_cols=278  Identities=20%  Similarity=0.302  Sum_probs=246.5

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      -+++.||.+.|.||++.|-.+.|+||+.|++++|||++++    .....+.||...|..+++++..+ +++|++.|+.|+
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg----~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VK  218 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG----QLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVK  218 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC----eEEEeecchhheeeeeeecccCc-eEEEecCCCeeE
Confidence            4678999999999999999999999999999999999874    35567899999999999998764 888999999999


Q ss_pred             EEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCC
Q 021319           93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      .||+...+.++....+ +...++...|.-..|+++++|.++++||+|+...++... +..++..+.+.|....+++++-|
T Consensus       219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D  298 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD  298 (460)
T ss_pred             EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence            9999988877765433 445688899999999999999999999999998888865 67789999999999999999999


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      +++++||+...+.+.++..|...+.+++.+|....+|+++.|. |+-|++..+..++.+.+|..-+++++.+.|+ ++++
T Consensus       299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~  376 (460)
T KOG0285|consen  299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS  376 (460)
T ss_pred             ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence            9999999999998889999999999999999999999999887 9999999999998899999999999886655 5678


Q ss_pred             ecCCceEEEEECCCCCeEEEEe---------ccCccceeEEcCCCCeeEEEecCCc
Q 021319          251 ASEDLFIDISNVHTGRTVHQIP---------CRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~~---------~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      |++.|.+..||..+|...+...         ....|.+-+|-..+..|+++..||+
T Consensus       377 G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKt  432 (460)
T KOG0285|consen  377 GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKT  432 (460)
T ss_pred             cCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcc
Confidence            9999999999999887665442         1346889999999999999999984

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.7e-35  Score=251.01  Aligned_cols=290  Identities=22%  Similarity=0.369  Sum_probs=245.9

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ...+++.||...|.++.|+.|..+|++||.|.++|||.++....  .....+.||.++|-+.-|..+ ..-+.+.+.||.
T Consensus       136 vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~--~~~~~l~gHkd~VvacfF~~~-~~~l~tvskdG~  212 (893)
T KOG0291|consen  136 VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN--LFTYALNGHKDYVVACFFGAN-SLDLYTVSKDGA  212 (893)
T ss_pred             eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc--cceEeccCCCcceEEEEeccC-cceEEEEecCce
Confidence            45678899999999999999999999999999999999976432  344568899999998888765 457889999999


Q ss_pred             EEEEeCCC-----------------------C-ce--------eeeEEec---CceEEEEEccCCCEEEEEeCCCcEEEE
Q 021319           91 VRLWDARS-----------------------G-KC--------SQQAELS---GENINITYKPDGTHIAVGNRDDELTIL  135 (314)
Q Consensus        91 v~iwd~~~-----------------------~-~~--------~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~  135 (314)
                      +.+|....                       + +.        ....-+.   ....+.+|++..+.|+++-..|.+.++
T Consensus       213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly  292 (893)
T KOG0291|consen  213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY  292 (893)
T ss_pred             EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence            99997651                       0 00        0001111   334567788899999999999999999


Q ss_pred             EccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCC-ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC
Q 021319          136 DVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGN-GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS  213 (314)
Q Consensus       136 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg  213 (314)
                      ++..+..++....+ ..+..++|+..|+.+++++.. |++-+|.+.....+...++|...+++++++|||+++|||+.||
T Consensus       293 elP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg  372 (893)
T KOG0291|consen  293 ELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG  372 (893)
T ss_pred             ecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC
Confidence            99999999887665 778999999999999998876 9999999998888888889999999999999999999999999


Q ss_pred             eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE----------------------
Q 021319          214 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI----------------------  271 (314)
Q Consensus       214 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~----------------------  271 (314)
                      .|+|||...+.|..+|..|...|..+.|+..|+.|+|+|.||+|+.||+...+..+++                      
T Consensus       373 KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A  452 (893)
T KOG0291|consen  373 KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA  452 (893)
T ss_pred             cEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence            9999999999999999999999999999999999999999999999998765543332                      


Q ss_pred             -----------------------eccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          272 -----------------------PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       272 -----------------------~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                                             .|.++|.+++|+|++..||++|=|+        |+|||++
T Consensus       453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk--------TVRiW~i  507 (893)
T KOG0291|consen  453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK--------TVRIWDI  507 (893)
T ss_pred             eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc--------eEEEEEe
Confidence                                   1346889999999999999999665        8999987

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.4e-35  Score=256.92  Aligned_cols=290  Identities=24%  Similarity=0.413  Sum_probs=243.0

Q ss_pred             ceeeecc-cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           13 SREYTGH-KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        13 ~~~~~gH-~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ...+.+| ...|.++.|+++|+.+++++.|+.+++|+......  .....+.+|...|.+++|+|++ .++++++.|+++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~ti  227 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTL  227 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCC-cEEEEecCCceE
Confidence            5555565 78899999999999999999999999999854221  1233458999999999999985 599999999999


Q ss_pred             EEEeC-CCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEc
Q 021319           92 RLWDA-RSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT  168 (314)
Q Consensus        92 ~iwd~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  168 (314)
                      ||||+ ..+.+.+.+.. ...+.+++|+|+++.+++|+.|++|++||+++.+++...+ +...+..++|++++..+++++
T Consensus       228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s  307 (456)
T KOG0266|consen  228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS  307 (456)
T ss_pred             EEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence            99999 44566666643 3455689999999999999999999999999988877764 456899999999999999999


Q ss_pred             CCceEEEEeCCCCC--ceeeeeecccc--eEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC---eEEEEE
Q 021319          169 GNGTVEVLTYPSLR--PLDTVVAHTAG--CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP---VRTISF  241 (314)
Q Consensus       169 ~~g~~~~~~~~~~~--~~~~~~~~~~~--i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---v~~~~~  241 (314)
                      .++.+++|+.....  .+..+..+...  ++++.|+|++++++++..|+.+++||+..+.++..+..|...   +.+..+
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~  387 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL  387 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence            99999999998877  45666666555  899999999999999999999999999999999888887664   334455


Q ss_pred             ccCCcEEEEecCCceEEEEECCCCCeEEEEe-c-cCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          242 SHTGDYIASASEDLFIDISNVHTGRTVHQIP-C-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       242 sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      ++.++++++|+.|+.|.+|+..++..+..+. + ...+..++|+|..+++++++.+.      ++.+++|--
T Consensus       388 ~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~------d~~~~~w~~  453 (456)
T KOG0266|consen  388 STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEG------DGLIRLWKY  453 (456)
T ss_pred             cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCC------CceEEEecC
Confidence            7899999999999999999999877776654 3 46789999999999999999543      357888854

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8e-35  Score=225.64  Aligned_cols=248  Identities=21%  Similarity=0.298  Sum_probs=216.4

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC--ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      +...+.--...|..++|+|.|+++|+||-|+..-||++......  .....++.+|.+.+.+..|-++  ..|+++|.|.
T Consensus        89 K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~  166 (343)
T KOG0286|consen   89 KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDM  166 (343)
T ss_pred             ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCc
Confidence            33444555678999999999999999999999999999755222  2334568999999999999864  4688999999


Q ss_pred             cEEEEeCCCCceeeeEEe-cCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEE
Q 021319           90 TVRLWDARSGKCSQQAEL-SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  166 (314)
                      ++-+||+.+++....+.. .+.+.++.+.| +++.+++|+-|...++||+|....++... +...++.+.|.|+|..|++
T Consensus       167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat  246 (343)
T KOG0286|consen  167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT  246 (343)
T ss_pred             eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence            999999999988776654 45677899999 99999999999999999999998777754 5678999999999999999


Q ss_pred             EcCCceEEEEeCCCCCceeeee--ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319          167 TTGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  244 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~  244 (314)
                      +++|++.++|+++..+.+..+.  ....+|++++|+..|++|..|..|..+.+||.-+++.+..+.+|+..|+++..+||
T Consensus       247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D  326 (343)
T KOG0286|consen  247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD  326 (343)
T ss_pred             cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCC
Confidence            9999999999998877666654  33457999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCceEEEEE
Q 021319          245 GDYIASASEDLFIDISN  261 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~  261 (314)
                      |..|+|||+|..++||.
T Consensus       327 G~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  327 GMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CcEEEecchhHheeecC
Confidence            99999999999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1e-35  Score=257.78  Aligned_cols=235  Identities=23%  Similarity=0.377  Sum_probs=195.5

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+.||.++|+.+.|+|+.++|+|||.|+++|+|.+++.    .....++||..+|.++.|+|. +.++||+|.|++.
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tA  517 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTA  517 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccc----eeEEEecCCCcceeeEEecCC-ceEEEecCCCcee
Confidence            44668999999999999999999999999999999999863    344567899999999999997 5799999999999


Q ss_pred             EEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      ++|........+.+..+ +..-++.|+|+.+++++|+.|.++++||..+...                            
T Consensus       518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~----------------------------  569 (707)
T KOG0263|consen  518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS----------------------------  569 (707)
T ss_pred             eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE----------------------------
Confidence            99998776655555433 3344688999999999999999999999765422                            


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                                   ++.+.+|.++|.+++|+|+|++||+|+.||.|.+||+..+..+.++.+|...|.++.||.+|..||+
T Consensus       570 -------------VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLas  636 (707)
T KOG0263|consen  570 -------------VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLAS  636 (707)
T ss_pred             -------------EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEe
Confidence                         2344689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCceEEEEECCCCCeE------------------------EEEec-cCccceeEEcCCCCeeEEE
Q 021319          251 ASEDLFIDISNVHTGRTV------------------------HQIPC-RAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~------------------------~~~~~-~~~i~~v~~~~~~~~la~~  292 (314)
                      ||.|..|++||+.+-...                        ..+.. ..+|..|.|...+-.|+.|
T Consensus       637 gg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  637 GGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             cCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence            999999999998652221                        12222 2367889998766555543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-34  Score=223.13  Aligned_cols=245  Identities=20%  Similarity=0.285  Sum_probs=211.6

Q ss_pred             eEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC-----CceeeeEEecCceE-EEEEccCCCEEEEEeCCCcE
Q 021319           59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-----GKCSQQAELSGENI-NITYKPDGTHIAVGNRDDEL  132 (314)
Q Consensus        59 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i  132 (314)
                      .-.+++|++.|..++..+.+.+.+++++.|.++.+|++..     |..++.+..+++.+ .+..++||++.++++.|+.+
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l   87 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL   87 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence            3468899999999999998889999999999999998754     34455555544444 58899999999999999999


Q ss_pred             EEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee-ecccceEEEEECCC--CCEEEE
Q 021319          133 TILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPM--GRYFAV  208 (314)
Q Consensus       133 ~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~--~~~l~t  208 (314)
                      ++||+...++.++. -+...+.+++++++...+++++.|.++.+|+........... .|...|+|+.|+|+  ..++++
T Consensus        88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs  167 (315)
T KOG0279|consen   88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS  167 (315)
T ss_pred             EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence            99999998776654 466789999999999999999999999999986554333222 23678999999998  679999


Q ss_pred             eeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCe
Q 021319          209 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNL  288 (314)
Q Consensus       209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  288 (314)
                      ++.|++|++||+++.+..+.+.+|...++.+++||||...++|++||.+.+||++.++.+..+.+...|++++|+|+...
T Consensus       168 ~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnryw  247 (315)
T KOG0279|consen  168 ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYW  247 (315)
T ss_pred             ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eEEEecCCcccccccceEEecccc
Q 021319          289 LAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       289 la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      |+.+-+.         -+|||++|
T Consensus       248 L~~at~~---------sIkIwdl~  262 (315)
T KOG0279|consen  248 LCAATAT---------SIKIWDLE  262 (315)
T ss_pred             EeeccCC---------ceEEEecc
Confidence            7655533         29999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-35  Score=220.71  Aligned_cols=281  Identities=16%  Similarity=0.211  Sum_probs=230.0

Q ss_pred             eeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319            8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (314)
Q Consensus         8 ~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~   87 (314)
                      .++...+.+..|+++|+.+.|+-||++.+|||.|++||+|+....    ....++.+|...|.+++.+.++ .-+++|+.
T Consensus         5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----~liktYsghG~EVlD~~~s~Dn-skf~s~Gg   79 (307)
T KOG0316|consen    5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----ALIKTYSGHGHEVLDAALSSDN-SKFASCGG   79 (307)
T ss_pred             CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----ceeeeecCCCceeeeccccccc-cccccCCC
Confidence            345566778899999999999999999999999999999987542    2334688999999999888764 57889999


Q ss_pred             CCcEEEEeCCCCceeeeEEecC-ceEEEEEccCCCEEEEEeCCCcEEEEEccC--CeEeeeecc-CcceeeEEeccCCCe
Q 021319           88 DKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRK--FKPIHRRKF-GYEVNEIAWNMTGEM  163 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~-~~~~~~~~~~~~~~~  163 (314)
                      |+.+.+||+.+|+..+.+..+. ++..+.|+.+...+++|+.|.++++||-|+  .+|++.... .-.+.++.  ..+..
T Consensus        80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~--v~~he  157 (307)
T KOG0316|consen   80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID--VAEHE  157 (307)
T ss_pred             CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE--ecccE
Confidence            9999999999999988876554 455799999999999999999999999875  345444321 12344443  45678


Q ss_pred             EEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCe--EEEEE
Q 021319          164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV--RTISF  241 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~  241 (314)
                      +++++.||+++.|+++..+....+.+  .+|+|++|+++++....++.|+++++.|-.+++.++.+++|...-  ..+++
T Consensus       158 IvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l  235 (307)
T KOG0316|consen  158 IVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL  235 (307)
T ss_pred             EEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence            89999999999999988765544444  469999999999999999999999999999999999998886532  34567


Q ss_pred             ccCCcEEEEecCCceEEEEECCCCCeEEEEeccCc--cceeEEcCCCCeeEEEecCCc
Q 021319          242 SHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA--MNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       242 sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~--i~~v~~~~~~~~la~~~~d~~  297 (314)
                      +.....+++||+||.|++||+...+.+.++++...  +.++++||...-|.++...+.
T Consensus       236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~  293 (307)
T KOG0316|consen  236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGD  293 (307)
T ss_pred             cccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCce
Confidence            88889999999999999999999999988876553  689999998877777765543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1e-33  Score=235.22  Aligned_cols=287  Identities=21%  Similarity=0.332  Sum_probs=228.9

Q ss_pred             eeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      =+++||...|+++.|-|.-. +++|||.|++|.+|+=.+.    .-...++.|+.-|+++.|+|+ +++++|++.||.+.
T Consensus       141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF----KFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~  215 (603)
T KOG0318|consen  141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF----KFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIY  215 (603)
T ss_pred             ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe----eeeecccccccceeeEEECCC-CCeEEEecCCccEE
Confidence            45789999999999999877 4999999999999964321    123356789999999999998 57999999999999


Q ss_pred             EEeCCCCceeeeEE----ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec---------------------
Q 021319           93 LWDARSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---------------------  147 (314)
Q Consensus        93 iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------------------  147 (314)
                      +||-.+|+.+..+.    +++.+.+++|+||++.+++.+.|.+++|||+.+.+.+.+..                     
T Consensus       216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt  295 (603)
T KOG0318|consen  216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT  295 (603)
T ss_pred             EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence            99999998876654    45678899999999999999999999999987654332211                     


Q ss_pred             -----------------------cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCce-----------eeeee----
Q 021319          148 -----------------------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPL-----------DTVVA----  189 (314)
Q Consensus       148 -----------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~----  189 (314)
                                             +...+.++.-++++..+++++.+|.+.-|+......-           ..+..    
T Consensus       296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~  375 (603)
T KOG0318|consen  296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG  375 (603)
T ss_pred             EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence                                   1224567888899999999999999988875422110           00000    


Q ss_pred             ------------------------------------------------------------------cccceEEEEECCCC
Q 021319          190 ------------------------------------------------------------------HTAGCYCIAIDPMG  203 (314)
Q Consensus       190 ------------------------------------------------------------------~~~~i~~i~~~~~~  203 (314)
                                                                                        -...+.+++++|++
T Consensus       376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~  455 (603)
T KOG0318|consen  376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG  455 (603)
T ss_pred             cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC
Confidence                                                                              01234578899999


Q ss_pred             CEEEEeeCCCeEEEeeCCCcE--EEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE-E-eccCccce
Q 021319          204 RYFAVGSADSLVSLWDISEML--CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-I-PCRAAMNS  279 (314)
Q Consensus       204 ~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~-~-~~~~~i~~  279 (314)
                      +.+|+|+.||.|++|.+....  .......|..++++++||||+.|||++...+.+.+||+.+.+.... + -|..+|++
T Consensus       456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~  535 (603)
T KOG0318|consen  456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC  535 (603)
T ss_pred             CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence            999999999999999997643  2334567889999999999999999999999999999998766322 2 26789999


Q ss_pred             eEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          280 VEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       280 v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ++|+|+..++||||-|.+.+        ||.+++
T Consensus       536 ~aWsP~n~~vATGSlDt~Vi--------iysv~k  561 (603)
T KOG0318|consen  536 VAWSPNNKLVATGSLDTNVI--------IYSVKK  561 (603)
T ss_pred             EEeCCCceEEEeccccceEE--------EEEccC
Confidence            99999999999999998755        888764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.5e-34  Score=245.76  Aligned_cols=280  Identities=21%  Similarity=0.345  Sum_probs=236.1

Q ss_pred             cccEEEEEECCCCCEEEEeeC-CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~-D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      ..+|..+.|+..|+.|+-|+. =|.+-||+....    .-.++.+||...+.+++++|++ +++++|+.||.|||||..+
T Consensus       307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE----sYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S  381 (893)
T KOG0291|consen  307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE----SYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS  381 (893)
T ss_pred             cceeeEEEecccCCEEEEcCCccceEEEEEeecc----ceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC
Confidence            467999999999999999875 479999998652    3445788999999999999985 7999999999999999999


Q ss_pred             CceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCc--ceeeEEeccCCCeEEEEcCC-ceEE
Q 021319           99 GKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGN-GTVE  174 (314)
Q Consensus        99 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-g~~~  174 (314)
                      +-|..++.. ......+.|+..++.+++.+.||+++.||+.+.+..++...+.  +..+++-.|.|..+.++..+ -.|.
T Consensus       382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~If  461 (893)
T KOG0291|consen  382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF  461 (893)
T ss_pred             ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence            999888754 4556679999999999999999999999999988777766554  45788888999998888765 5789


Q ss_pred             EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecC
Q 021319          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASE  253 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~  253 (314)
                      +|+.++++.+..+.+|+++|.+++|+|.++.||+++=|.+||+||+-.. ..+.++ .+...+..++|+|+|+.||.++.
T Consensus       462 vWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTl  540 (893)
T KOG0291|consen  462 VWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATL  540 (893)
T ss_pred             EEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEe
Confidence            9999999999999999999999999999999999999999999998543 223344 34557999999999999999999


Q ss_pred             CceEEEEECCCCCeEEEEec---------------------cCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          254 DLFIDISNVHTGRTVHQIPC---------------------RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       254 d~~v~v~~~~~~~~~~~~~~---------------------~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ||.|.+||...+.....+..                     ....+++++++||+.+.+||..+        .++||++.
T Consensus       541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn--------~iCiY~v~  612 (893)
T KOG0291|consen  541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESN--------SICIYDVP  612 (893)
T ss_pred             cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcc--------cEEEEECc
Confidence            99999999987655533321                     13578999999999999999664        58888875


Q ss_pred             C
Q 021319          313 N  313 (314)
Q Consensus       313 ~  313 (314)
                      +
T Consensus       613 ~  613 (893)
T KOG0291|consen  613 E  613 (893)
T ss_pred             h
Confidence            4

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1e-33  Score=225.51  Aligned_cols=286  Identities=19%  Similarity=0.309  Sum_probs=222.4

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .-.+.||+..|+++.||.||.+||||+.+|.|+||++.++.    ....+..--..+.-+.|+|. ..+|+.|+.||.+-
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~----~~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvW  173 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG----EQWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVW  173 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc----eEEEeecccCceEEEEeccc-ccEEEeecCCCcEE
Confidence            34678999999999999999999999999999999997643    22334444566888999996 57899999999999


Q ss_pred             EEeCCCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEeccCCCeEEEEcC
Q 021319           93 LWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      +|.+.++...+.+..+.. ..+-.|.|+|+.++++..|++|++||+++.+|+++...  ..+..++.++..+..++.+..
T Consensus       174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~  253 (399)
T KOG0296|consen  174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS  253 (399)
T ss_pred             EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence            999998654444443333 34566999999999999999999999999999988653  234455566666666666666


Q ss_pred             CceEEEEeCCCCCceeee--------eecccceEEE---EECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE
Q 021319          170 NGTVEVLTYPSLRPLDTV--------VAHTAGCYCI---AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT  238 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~--------~~~~~~i~~i---~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  238 (314)
                      ++.+.+......+.+...        ..+...+.|+   .++..-.++|+|+-||+|.|||+...+..+.+ .|+.+|..
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~  332 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTK  332 (399)
T ss_pred             CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEE
Confidence            665555544433322211        1344444444   44555668899999999999999876655544 57778999


Q ss_pred             EEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          239 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +.|-+ ..+|+++..||.|+.||.++|..+..+. |...|.+++.+|+.++++|+|+|        ++.+||..++
T Consensus       333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D--------~~a~VF~v~~  399 (399)
T KOG0296|consen  333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDD--------NTALVFEVPN  399 (399)
T ss_pred             EEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCC--------CeEEEEecCC
Confidence            99999 8999999999999999999999998876 56789999999999999999977        6899987653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-34  Score=249.57  Aligned_cols=261  Identities=23%  Similarity=0.361  Sum_probs=209.5

Q ss_pred             eeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319            8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (314)
Q Consensus         8 ~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~   87 (314)
                      .+++..+.+.||...|.++....+|.+|+|||.|+++++|.++.............||...|.+++++..+..+++++|.
T Consensus       353 ~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~  432 (775)
T KOG0319|consen  353 LPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ  432 (775)
T ss_pred             cCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC
Confidence            34456678899999999999777889999999999999998854333233334567999999999998888889999999


Q ss_pred             CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      |+++++|++...+-...      ..          +.           ..+.    ...-++..+++++.+|+...++++
T Consensus       433 D~tlK~W~l~~s~~~~~------~~----------~~-----------~~~~----t~~aHdKdIN~Vaia~ndkLiAT~  481 (775)
T KOG0319|consen  433 DCTLKLWDLPKSKETAF------PI----------VL-----------TCRY----TERAHDKDINCVAIAPNDKLIATG  481 (775)
T ss_pred             CceEEEecCCCcccccc------cc----------ee-----------hhhH----HHHhhcccccceEecCCCceEEec
Confidence            99999999976221000      00          00           0000    001233456666666666666666


Q ss_pred             cCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE
Q 021319          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY  247 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  247 (314)
                      +.|.+.++|++++.+.+..+.+|..++.|+.|+|..+.+||++.|++|+||.+.+..|+++|.+|...|..+.|-.+++.
T Consensus       482 SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~q  561 (775)
T KOG0319|consen  482 SQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQ  561 (775)
T ss_pred             ccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcE
Confidence            66666666666666666788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCccc
Q 021319          248 IASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      |+|++.||.+++|++.++..+..+. |..+|.+++-+|...+++|||.|+.+-
T Consensus       562 liS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~  614 (775)
T KOG0319|consen  562 LISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRII  614 (775)
T ss_pred             EEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEE
Confidence            9999999999999999999998886 577999999999999999999996433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-33  Score=243.16  Aligned_cols=288  Identities=23%  Similarity=0.396  Sum_probs=227.1

Q ss_pred             eeeec-ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC-CEEEEEeCCCcE
Q 021319           14 REYTG-HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTV   91 (314)
Q Consensus        14 ~~~~g-H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~D~~v   91 (314)
                      +...+ |.++|.-++|+|.|..+++||.|+.|+|||+..+.    ....++||.+.|..+.|+|+.. .+|++|..|+++
T Consensus        98 rswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~----~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v  173 (775)
T KOG0319|consen   98 RSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY----CTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV  173 (775)
T ss_pred             HhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE----EEEEecCCCceEEEEEeCCccchhheeecCCCceE
Confidence            44445 99999999999999999999999999999997532    3457899999999999998753 367899999999


Q ss_pred             EEEeCCCCce-eeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee---------------e---------
Q 021319           92 RLWDARSGKC-SQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---------------R---------  145 (314)
Q Consensus        92 ~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---------------~---------  145 (314)
                      ++||++.++. .... .+.+...++.+.+|+..++++++|..+.+||+...+...               .         
T Consensus       174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~  253 (775)
T KOG0319|consen  174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI  253 (775)
T ss_pred             EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence            9999986553 3333 234667789999999999999999999999985321000               0         


Q ss_pred             -----------------------ecc-Cc---------------------------------------------------
Q 021319          146 -----------------------RKF-GY---------------------------------------------------  150 (314)
Q Consensus       146 -----------------------~~~-~~---------------------------------------------------  150 (314)
                                             .+. ..                                                   
T Consensus       254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG  333 (775)
T KOG0319|consen  254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG  333 (775)
T ss_pred             EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence                                   000 00                                                   


Q ss_pred             ---------------------------------ceeeEEeccCCC-----------------------------------
Q 021319          151 ---------------------------------EVNEIAWNMTGE-----------------------------------  162 (314)
Q Consensus       151 ---------------------------------~~~~~~~~~~~~-----------------------------------  162 (314)
                                                       .+.++.-...|.                                   
T Consensus       334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s  413 (775)
T KOG0319|consen  334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS  413 (775)
T ss_pred             CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence                                             001111001111                                   


Q ss_pred             ------------eEEEEcCCceEEEEeCCCCCc-----ee----eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC
Q 021319          163 ------------MFFLTTGNGTVEVLTYPSLRP-----LD----TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (314)
Q Consensus       163 ------------~~~~~~~~g~~~~~~~~~~~~-----~~----~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~  221 (314)
                                  .+++++.|.++++|.++..++     ..    +...|...|+|++++|+.+++|||+.|.+.++|++.
T Consensus       414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le  493 (775)
T KOG0319|consen  414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE  493 (775)
T ss_pred             cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence                        234455566666666654211     01    123588899999999999999999999999999999


Q ss_pred             CcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccc
Q 021319          222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       222 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~  300 (314)
                      +...+.++.+|...|.++.|+|..+.|||+|.|.+|+||...+...++++. |...|..+.|-.+++.|++++.|     
T Consensus       494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad-----  568 (775)
T KOG0319|consen  494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD-----  568 (775)
T ss_pred             CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC-----
Confidence            999999999999999999999999999999999999999999999999998 78899999999999999999998     


Q ss_pred             cccceEEeccccC
Q 021319          301 ADEGVFRIYGFEN  313 (314)
Q Consensus       301 ~~~~~~~~~~~~~  313 (314)
                         |.+|||++.+
T Consensus       569 ---GliKlWnikt  578 (775)
T KOG0319|consen  569 ---GLIKLWNIKT  578 (775)
T ss_pred             ---CcEEEEeccc
Confidence               7899999854

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=9.9e-35  Score=230.30  Aligned_cols=267  Identities=22%  Similarity=0.356  Sum_probs=217.7

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      .+.|+|+++  |...++||..|.+|+|||.+...    ....+.||.++|.|+.+..   .+++|||.|.+|++||++++
T Consensus       197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~----c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE----CLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             CCceEEEEe--cchhhhcccccCceEEeccccHH----HHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCC
Confidence            468999997  55679999999999999986532    3346789999999999863   58999999999999999999


Q ss_pred             ceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe--eee--ccCcceeeEEeccCCCeEEEEcCCceEE
Q 021319          100 KCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI--HRR--KFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (314)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~  174 (314)
                      +++..... ....+.+.|+  ..++++++.|.++.+||+..+..+  .+.  -+-..++.+.|  +.++++++++|.+++
T Consensus       268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTik  343 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIK  343 (499)
T ss_pred             chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEE
Confidence            98776543 3445567665  569999999999999999876532  111  12345666665  456999999999999


Q ss_pred             EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC
Q 021319          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED  254 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d  254 (314)
                      +|+..+.+.+.++.+|..+|-|+..  .++++++|++|.+|++||...+.|+..+++|+.-|.++.|  +.+.++||+.|
T Consensus       344 vW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD  419 (499)
T KOG0281|consen  344 VWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD  419 (499)
T ss_pred             EEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeecccc
Confidence            9999999999999999999988776  5899999999999999999999999999999999999998  56889999999


Q ss_pred             ceEEEEECCCCCeEEE----------EeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          255 LFIDISNVHTGRTVHQ----------IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       255 ~~v~v~~~~~~~~~~~----------~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |+|+|||+.++...+.          ..+.++|..+-|  |...+++++.|        .|+=||+|.+
T Consensus       420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHd--------dtILiWdFl~  478 (499)
T KOG0281|consen  420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHD--------DTILIWDFLN  478 (499)
T ss_pred             ceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCC--------CeEEEEEcCC
Confidence            9999999987644322          134567888888  55667777755        5888999965

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.2e-33  Score=244.38  Aligned_cols=248  Identities=24%  Similarity=0.400  Sum_probs=215.6

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+.+|...|++++|+|+++++++|+.|+++||||+...   ......+.+|...|++++|+|.+ ++++||+.|++|
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tv  270 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTV  270 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcE
Confidence            56667899999999999999999999999999999999332   22345678999999999999997 899999999999


Q ss_pred             EEEeCCCCceeeeEEecC-ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE--eeeecc-C-c-ceeeEEeccCCCeEE
Q 021319           92 RLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHRRKF-G-Y-EVNEIAWNMTGEMFF  165 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~-~-~-~~~~~~~~~~~~~~~  165 (314)
                      ||||++++++...+..+. .+..++|++++++|++++.|+.+++||+.+...  ...... . . .+..+.|+|++.+++
T Consensus       271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll  350 (456)
T KOG0266|consen  271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL  350 (456)
T ss_pred             EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence            999999999988887665 455699999999999999999999999998873  333221 1 1 579999999999999


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecccce---EEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec-ccCeEEEEE
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGC---YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-EWPVRTISF  241 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i---~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~  241 (314)
                      ++..++.+++|++........+.+|...+   .+...++.++++++|+.|+.|.+||+.++..+..+.+| ...+..+++
T Consensus       351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~  430 (456)
T KOG0266|consen  351 SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS  430 (456)
T ss_pred             EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence            99999999999999888888888887753   34455788999999999999999999998888889999 888999999


Q ss_pred             ccCCcEEEEec--CCceEEEEECC
Q 021319          242 SHTGDYIASAS--EDLFIDISNVH  263 (314)
Q Consensus       242 sp~~~~l~s~s--~d~~v~v~~~~  263 (314)
                      +|...++++++  .|+.+++|...
T Consensus       431 ~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  431 HPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCCcCeeeecCcCCCceEEEecCC
Confidence            99999999999  78999999653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.3e-32  Score=211.00  Aligned_cols=287  Identities=18%  Similarity=0.275  Sum_probs=233.8

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC--CCcE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG--DKTV   91 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--D~~v   91 (314)
                      +.+..-.+.|+++.|+++|.++++++.|.+++|||...+.    +...+..++..+..++|.... +.++.++.  |.+|
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~----~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK----QVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTI   82 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc----eeeEeecccccccEEEEecCC-ceEEEccCCCCCce
Confidence            3344456789999999999999999999999999987643    223455666678888886554 44555555  8999


Q ss_pred             EEEeCCCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319           92 RLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      |.-++.+.+.++-+..+.. +..++.+|-+..+++++.|+++++||+|..+........ ....+++.|.|-+++++.+.
T Consensus        83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEecCC
Confidence            9999999999988766544 557999999999999999999999999976655544332 33457899999999999999


Q ss_pred             ceEEEEeCCCC--Cceeeee---ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCe---EEEEEc
Q 021319          171 GTVEVLTYPSL--RPLDTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV---RTISFS  242 (314)
Q Consensus       171 g~~~~~~~~~~--~~~~~~~---~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v---~~~~~s  242 (314)
                      +.|++|+++..  .|..++.   ....+.+.+.|+|+|++|..+...+.+.+.|--++..+.++..+...-   ...+|+
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence            99999998754  3555543   235678999999999999999999999999999999888887765432   567899


Q ss_pred             cCCcEEEEecCCceEEEEECCCCCeEEEEec--cCccceeEEcCCCCeeEEEecCCcccccccceE
Q 021319          243 HTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF  306 (314)
Q Consensus       243 p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~--~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~  306 (314)
                      ||++++++|+.||.|++|++++|+++..+..  .+++.++.|+|...++|+++..-..|.++++.+
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~  307 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDAL  307 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecccccc
Confidence            9999999999999999999999999887753  678999999999999999998887777766554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=236.53  Aligned_cols=279  Identities=16%  Similarity=0.256  Sum_probs=240.5

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      +...++.||++.|+++++|.+...++||+. ++++||+..+..+     ++.-+ .+.+.+..|.|.+ .++++|...|.
T Consensus       364 ~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kc-----iRTi~-~~y~l~~~Fvpgd-~~Iv~G~k~Ge  435 (888)
T KOG0306|consen  364 TSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKC-----IRTIT-CGYILASKFVPGD-RYIVLGTKNGE  435 (888)
T ss_pred             cceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcce-----eEEec-cccEEEEEecCCC-ceEEEeccCCc
Confidence            444667899999999999999988888874 7899999876432     12112 2368888999864 68899999999


Q ss_pred             EEEEeCCCCceeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE-------------eeeeccCcceeeEE
Q 021319           91 VRLWDARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-------------IHRRKFGYEVNEIA  156 (314)
Q Consensus        91 v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------~~~~~~~~~~~~~~  156 (314)
                      +.++|+.+...+... .+.+.+..++..||++.+++|+.|.++++||..-...             ....+...++.++.
T Consensus       436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~  515 (888)
T KOG0306|consen  436 LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS  515 (888)
T ss_pred             eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence            999999887655444 3466778899999999999999999999999752111             12344566789999


Q ss_pred             eccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCe
Q 021319          157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV  236 (314)
Q Consensus       157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v  236 (314)
                      ++|++.+++++.-+.++++|.+.+.+..-++.+|.-+|.|++++||+++++||+.|..|++|-+.=+-|.+.+.+|+..|
T Consensus       516 ~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv  595 (888)
T KOG0306|consen  516 VSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV  595 (888)
T ss_pred             EcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce
Confidence            99999999999999999999999998888899999999999999999999999999999999999899999999999999


Q ss_pred             EEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCc
Q 021319          237 RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       237 ~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      .++.|-|....+.|+|.|+.|+-||..+-+.++++. |...|.+++-+|+|.+++++|.|++
T Consensus       596 m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  596 MSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             eEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence            999999999999999999999999999888888875 5678999999999999999999985

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=7.7e-34  Score=229.48  Aligned_cols=283  Identities=20%  Similarity=0.262  Sum_probs=233.0

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ...+..|.+.|+.+.|-++...|++||.|..|++|++.......  .-.+.|..++|+.+.+.+++ ..+++++.|+.++
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~--~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r  244 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL--ISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLR  244 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhh--hhhhhccCCCcceeeecCCC-ceEEeecCCCcee
Confidence            35567899999999999999999999999999999987544222  22467888999999999875 5778899999999


Q ss_pred             EEeCCCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCc
Q 021319           93 LWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG  171 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  171 (314)
                      +|++...+...++..+.. ..++.|......+++|+.|.+++.||+.+....+.......+..+.-+  +..++++.-++
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dk  322 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDK  322 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeeccccc
Confidence            999998887766655444 345666655555999999999999999987666666666566666544  56778888999


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec----ccCeEEEEEccCCcE
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL----EWPVRTISFSHTGDY  247 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~  247 (314)
                      ++++|+.+...+......++ .|+++..++++..+.+++.|.++.+.|+++..+.+.+...    ...++.+.|||++.|
T Consensus       323 kvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y  401 (459)
T KOG0288|consen  323 KVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY  401 (459)
T ss_pred             ceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence            99999998888887777665 8999999999999999999999999999998888777542    345788999999999


Q ss_pred             EEEecCCceEEEEECCCCCeEEEEec--c-CccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319          248 IASASEDLFIDISNVHTGRTVHQIPC--R-AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  309 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~~~~~~~~~~--~-~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~  309 (314)
                      +|+||.||.|+||++.+++....+..  . ..|++++|+|.|..|++++.++        ..++|
T Consensus       402 vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~--------~v~lW  458 (459)
T KOG0288|consen  402 VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK--------AVTLW  458 (459)
T ss_pred             eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc--------ceEec
Confidence            99999999999999999988777653  2 2599999999999999888764        56676

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.8e-33  Score=233.66  Aligned_cols=280  Identities=20%  Similarity=0.245  Sum_probs=238.7

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .|.+..|...|.+|.|+|....++++-..|.|.|||.+++.  -+.  .+.-..-+|.+..|.+. .+++++|+.|..||
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--mVk--sfeV~~~PvRa~kfiaR-knWiv~GsDD~~Ir   80 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--MVK--SFEVSEVPVRAAKFIAR-KNWIVTGSDDMQIR   80 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce--eee--eeeecccchhhheeeec-cceEEEecCCceEE
Confidence            35566789999999999999999999999999999998743  222  34446778888888875 57999999999999


Q ss_pred             EEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCCcEEEEEccCCeE-eeeec-cCcceeeEEeccCC-CeEEEEc
Q 021319           93 LWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRRK-FGYEVNEIAWNMTG-EMFFLTT  168 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~-~~~~~~~~~~~~~~-~~~~~~~  168 (314)
                      +++.++++.+..++.+..- .+++.+|...++.+++.|-.|++||....=. .+..+ +..-+.+++|.|.+ +.|++++
T Consensus        81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s  160 (794)
T KOG0276|consen   81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS  160 (794)
T ss_pred             EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence            9999999998888766654 4789999999999999999999999876422 23322 34558899999865 6788889


Q ss_pred             CCceEEEEeCCCCCceeeeeecccceEEEEECCCC--CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCc
Q 021319          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG--RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD  246 (314)
Q Consensus       169 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  246 (314)
                      -|+++++|.+.+..+..++.+|..+|+|+++-+.|  .+|++|+.|.+|+|||..+-.|++++++|...|+.++|+|.=.
T Consensus       161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp  240 (794)
T KOG0276|consen  161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP  240 (794)
T ss_pred             ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence            99999999999999999999999999999997754  5999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCCc
Q 021319          247 YIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       247 ~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      +++|||+||++++|+..|-++...+-. .+++.+|+-++..+.+|.|.+.+.
T Consensus       241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~  292 (794)
T KOG0276|consen  241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGS  292 (794)
T ss_pred             EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCc
Confidence            999999999999999988776655443 457889999988888887776544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-33  Score=222.20  Aligned_cols=247  Identities=24%  Similarity=0.420  Sum_probs=215.6

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+.||.+.|.+|.|+..|++|++|+.|-.+++||.+.. ...+  ..+.||.-.|.+++|-|.+ ++|+|++.|.+|
T Consensus       142 ~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~--ks~~gh~h~vS~V~f~P~g-d~ilS~srD~ti  217 (406)
T KOG0295|consen  142 LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCI--KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTI  217 (406)
T ss_pred             hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHH--HHhcCcccceeeEEEEecC-Ceeeecccccce
Confidence            45678899999999999999999999999999999998652 1111  2356899999999999985 799999999999


Q ss_pred             EEEeCCCCceeeeEEecCceE-EEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccC---------
Q 021319           92 RLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMT---------  160 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~---------  160 (314)
                      +.|+..++.|+.++..+.+-+ .+..+.||.++++++.|.++++|-+.+.+.... ..+..++.+++|-|.         
T Consensus       218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a  297 (406)
T KOG0295|consen  218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA  297 (406)
T ss_pred             eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence            999999999999887666654 467889999999999999999999887643222 244566777777553         


Q ss_pred             ------CCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc
Q 021319          161 ------GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW  234 (314)
Q Consensus       161 ------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~  234 (314)
                            +.++..++.|+++++|+......+.++.+|...|..++|+|.|+||+++..|+++++||++..+|.+++..|+.
T Consensus       298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h  377 (406)
T KOG0295|consen  298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH  377 (406)
T ss_pred             cCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc
Confidence                  24778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          235 PVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      -|.+++|+-+..+++||+-|-.+++|..
T Consensus       378 fvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  378 FVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999999999999999974

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.4e-32  Score=232.26  Aligned_cols=284  Identities=24%  Similarity=0.375  Sum_probs=214.1

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ...+.||+.+|+++.|+..|.+|+|||.|+.|.+||+-.    ..-.+++.||++.|+.+.|.. +..+++|.+.|+.|+
T Consensus       100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~----E~Gl~rL~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK  174 (888)
T KOG0306|consen  100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVG----EEGLFRLRGHKDSITQALFLN-GDSFLVSVSKDSMIK  174 (888)
T ss_pred             eeeecccccceEEEEEcccCceEeecCCCccEEEEEecc----ceeeEEeecchHHHhHHhccC-CCeEEEEeccCceEE
Confidence            345789999999999999999999999999999999864    234568999999999998875 357999999999999


Q ss_pred             EEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccC--------------------------------
Q 021319           93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRK--------------------------------  139 (314)
Q Consensus        93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--------------------------------  139 (314)
                      +||+.+..|..+... .++...+++.+  +.+++++.|+.+++|++..                                
T Consensus       175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~  252 (888)
T KOG0306|consen  175 FWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVT  252 (888)
T ss_pred             EEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEee
Confidence            999999888766533 44555666665  6788888888888888710                                


Q ss_pred             --------------------------------------------------------------------------------
Q 021319          140 --------------------------------------------------------------------------------  139 (314)
Q Consensus       140 --------------------------------------------------------------------------------  139 (314)
                                                                                                      
T Consensus       253 d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~  332 (888)
T KOG0306|consen  253 DFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSG  332 (888)
T ss_pred             cCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecC
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------------------CeEeeeecc
Q 021319          140 -----------------------------------------------------------------------FKPIHRRKF  148 (314)
Q Consensus       140 -----------------------------------------------------------------------~~~~~~~~~  148 (314)
                                                                                             .+.+.++..
T Consensus       333 ~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~  412 (888)
T KOG0306|consen  333 GTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC  412 (888)
T ss_pred             CcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc
Confidence                                                                                   000000000


Q ss_pred             CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC-----c
Q 021319          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-----M  223 (314)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~-----~  223 (314)
                      + -+.+..|.|.+.++++|..+|.+.+|++.+...+.+...|.+.++.++.+||++.+++|+.|.+|++||..-     +
T Consensus       413 ~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g  491 (888)
T KOG0306|consen  413 G-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG  491 (888)
T ss_pred             c-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence            0 001112333344445555555555555555554555667999999999999999999999999999999742     1


Q ss_pred             EE---EE----EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE-EeccCccceeEEcCCCCeeEEEecC
Q 021319          224 LC---VR----TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       224 ~~---~~----~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      ..   +.    +.-..+..|.|+++||||++||.+=.|.+|+||-+.+-+-... +.|+-+|.|+..+||.++++|||.|
T Consensus       492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSAD  571 (888)
T KOG0306|consen  492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD  571 (888)
T ss_pred             ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCC
Confidence            11   10    1112456799999999999999999999999999988776554 4577799999999999999999999


Q ss_pred             CcccccccceEEecccc
Q 021319          296 KNKYQADEGVFRIYGFE  312 (314)
Q Consensus       296 ~~~~~~~~~~~~~~~~~  312 (314)
                      |        ++||||++
T Consensus       572 K--------nVKiWGLd  580 (888)
T KOG0306|consen  572 K--------NVKIWGLD  580 (888)
T ss_pred             C--------ceEEeccc
Confidence            8        58999986

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.4e-32  Score=210.46  Aligned_cols=271  Identities=20%  Similarity=0.292  Sum_probs=212.9

Q ss_pred             ccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           19 HKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        19 H~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      -.+.|.+|+|||+. .+++++|.|++||+|+++..+  .........|.++|.+++|+.++ ..+++|+.|+.+++||+.
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g--~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG--QLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCC--cccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEcc
Confidence            35689999999955 456688999999999997632  22223456799999999999775 788999999999999999


Q ss_pred             CCceeeeEEecCceEEEEEccCCC--EEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEE
Q 021319           98 SGKCSQQAELSGENINITYKPDGT--HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV  175 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  175 (314)
                      +++......+...+..+.|-+...  .|++|+.|.+|+.||+|...++.+.+.+..+.+.  .-....++++..+..+.+
T Consensus       103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~--Dv~~pm~vVata~r~i~v  180 (347)
T KOG0647|consen  103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAA--DVLYPMAVVATAERHIAV  180 (347)
T ss_pred             CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeeh--hccCceeEEEecCCcEEE
Confidence            997666666666677788876655  8999999999999999999999998887665543  345678899999999999


Q ss_pred             EeCCCCCceee-e-eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc--EEEEEeeecc---------cCeEEEEEc
Q 021319          176 LTYPSLRPLDT-V-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLE---------WPVRTISFS  242 (314)
Q Consensus       176 ~~~~~~~~~~~-~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~---------~~v~~~~~s  242 (314)
                      |.+........ . ..-...+.|++..++....|.|+-+|.+.+..+..+  +.-.+|+.|.         .+|++|+|+
T Consensus       181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh  260 (347)
T KOG0647|consen  181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH  260 (347)
T ss_pred             EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence            99854322111 1 112335789999999988899999999999988765  2222333333         368899999


Q ss_pred             cCCcEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcCCCCeeEEEec
Q 021319          243 HTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGD  294 (314)
Q Consensus       243 p~~~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~  294 (314)
                      |.-..|+|++.||....||...-.++... .+..+|++.+||.+|.++|++-.
T Consensus       261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             cccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence            99999999999999999998765555554 35679999999999999999863

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4.2e-33  Score=211.84  Aligned_cols=283  Identities=17%  Similarity=0.285  Sum_probs=237.6

Q ss_pred             ceeeecccccEEEEEEC---CCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           13 SREYTGHKKKVHSVAWN---CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s---~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      ..++.||..+|-.++||   |+|-+|++++.|+.=.+=+=+++  .++  -.+.||+++|...+.+.+ ....+|++.|-
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--dwi--gtfeghkgavw~~~l~~n-a~~aasaaadf   81 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--DWI--GTFEGHKGAVWSATLNKN-ATRAASAAADF   81 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--CcE--EeeeccCcceeeeecCch-hhhhhhhcccc
Confidence            35678999999999998   47889999999998766443332  232  357899999999988754 56788999999


Q ss_pred             cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee--eeccCcceeeEEeccCCCeEEEE
Q 021319           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH--RRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      +.++||..+|..+..++.+.-...++|+.|.+.|++|+.+.-+++||+.+++...  -..+...+..+.|....+.++++
T Consensus        82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence            9999999999887777766666689999999999999999999999998765332  23456678899999999999999


Q ss_pred             cCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE
Q 021319          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY  247 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  247 (314)
                      ..++++++||..+.+.++++. ...+++++-++++|+++.++. .+.|.+||......++.++ ....|.+.+.+|+...
T Consensus       162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~  238 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEF  238 (334)
T ss_pred             ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-CccccccccccCCCce
Confidence            999999999999988877765 356799999999999987764 5569999999888887764 4567899999999999


Q ss_pred             EEEecCCceEEEEECCCCCeEEEE--eccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          248 IASASEDLFIDISNVHTGRTVHQI--PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~~~~~~~~--~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +++|++|..++.+|..+|..+..+  .+.++|.||.|+|+|...|+||.|        |++|||-.
T Consensus       239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED--------GTirlWQt  296 (334)
T KOG0278|consen  239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED--------GTIRLWQT  296 (334)
T ss_pred             EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC--------ceEEEEEe
Confidence            999999999999999999888664  356899999999999999999977        78999954

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.9e-32  Score=209.74  Aligned_cols=243  Identities=21%  Similarity=0.312  Sum_probs=211.4

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      ++.||.++|..|.|.+|++.|+|||.|++|+.||++++.    ...+.++|..-|+.+.-..-+..++.|++.|+++|+|
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~----~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~  160 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK----RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW  160 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccce----eeehhccccceeeecCccccCCeEEEecCCCceEEEE
Confidence            357999999999999999999999999999999998753    2346788999999988655567789999999999999


Q ss_pred             eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceE
Q 021319           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTV  173 (314)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~  173 (314)
                      |.++..++++.+-+.+..+++|..++..+.+|+.|+.|++||+++....+... +.-++..+..++.|..++.-+-+.++
T Consensus       161 D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv  240 (338)
T KOG0265|consen  161 DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTV  240 (338)
T ss_pred             eecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceE
Confidence            99999888887777788899999999999999999999999999887776654 34578899999999999999999999


Q ss_pred             EEEeCCCC----Cceeeeeeccc----ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCC
Q 021319          174 EVLTYPSL----RPLDTVVAHTA----GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG  245 (314)
Q Consensus       174 ~~~~~~~~----~~~~~~~~~~~----~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~  245 (314)
                      ++|+.+..    +.+..+.+|..    ....++|+|+++.+..|+.|..+.+||.....++..+++|...|.+++|+|..
T Consensus       241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e  320 (338)
T KOG0265|consen  241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE  320 (338)
T ss_pred             EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC
Confidence            99997653    33555655432    34678999999999999999999999998888899999999999999999999


Q ss_pred             cEEEEecCCceEEEEE
Q 021319          246 DYIASASEDLFIDISN  261 (314)
Q Consensus       246 ~~l~s~s~d~~v~v~~  261 (314)
                      .+|.+++.|..|++=+
T Consensus       321 ~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  321 PIILSCSSDKTIYLGE  336 (338)
T ss_pred             cEEEEeccCceeEeec
Confidence            9999999999887643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.6e-33  Score=228.20  Aligned_cols=244  Identities=21%  Similarity=0.362  Sum_probs=206.8

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecC-CCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      +.++|.||+.+|.+++|+.+|..|+|+|.|+.|++||++++..  ..    ..| ...++++.++|++.+.+++|+.|+.
T Consensus       250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~--~~----~f~~~~~~~cvkf~pd~~n~fl~G~sd~k  323 (503)
T KOG0282|consen  250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV--LS----RFHLDKVPTCVKFHPDNQNIFLVGGSDKK  323 (503)
T ss_pred             eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceE--EE----EEecCCCceeeecCCCCCcEEEEecCCCc
Confidence            5688999999999999999999999999999999999987531  11    223 3457899999998889999999999


Q ss_pred             EEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEeccCCCeEEEE
Q 021319           91 VRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  167 (314)
                      |+.||++++++++.... -+.+..+.|.++++.+++.+.|+++++|+.+.+.++..+.-  -....++..+|.++.++..
T Consensus       324 i~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ  403 (503)
T KOG0282|consen  324 IRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ  403 (503)
T ss_pred             EEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence            99999999998776643 34567899999999999999999999999988776654332  2456788899999999999


Q ss_pred             cCCceEEEEeCCCC---Cceeeeeecccc--eEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319          168 TGNGTVEVLTYPSL---RPLDTVVAHTAG--CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS  242 (314)
Q Consensus       168 ~~~g~~~~~~~~~~---~~~~~~~~~~~~--i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  242 (314)
                      +-++.+.++.....   .+-..+.+|..+  ...+.|||||++|++|+.||.+.+||.++.+.+.+++.|+.++..+.|+
T Consensus       404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wH  483 (503)
T KOG0282|consen  404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWH  483 (503)
T ss_pred             ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEec
Confidence            99999999875432   233456677654  4567899999999999999999999999999999999999999999999


Q ss_pred             cCC-cEEEEecCCceEEEEE
Q 021319          243 HTG-DYIASASEDLFIDISN  261 (314)
Q Consensus       243 p~~-~~l~s~s~d~~v~v~~  261 (314)
                      |.. .-+||++.||.|.+|+
T Consensus       484 P~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  484 PVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCCcceeEecccCceeEecC
Confidence            974 6899999999999996

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-32  Score=236.38  Aligned_cols=247  Identities=22%  Similarity=0.326  Sum_probs=205.2

Q ss_pred             eeee-cccccEEEEEECCCCCEEEEeeCCCcEEEeecCC--------------------------------CCCC-----
Q 021319           14 REYT-GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP--------------------------------HGHG-----   55 (314)
Q Consensus        14 ~~~~-gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~--------------------------------~~~~-----   55 (314)
                      +++. +|.+.|.++.||+||+||||||.|+.||||.+..                                ....     
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            4555 8999999999999999999999999999998754                                0000     


Q ss_pred             -------------------ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEE
Q 021319           56 -------------------KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY  116 (314)
Q Consensus        56 -------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  116 (314)
                                         ..+..++.||.+.|.+|+|+-  +++|+|+|.|++||+|++....|+..+.+..-+.+++|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF  417 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF  417 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence                               011124679999999999986  46999999999999999999999999988888889999


Q ss_pred             cc-CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeee--c---
Q 021319          117 KP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA--H---  190 (314)
Q Consensus       117 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~---  190 (314)
                      +| |.+++++|+.|+.++||++...+.+.-.....-+..+.|.|+|+..++|+-+|..++|+....+.......  |   
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            99 78999999999999999998888777666677899999999999999999999999999887665444321  1   


Q ss_pred             ---ccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeeccc--CeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          191 ---TAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEW--PVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       191 ---~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                         ...|+.+.+.|.. ..+++.+.|..|||||.++...+..|+++..  .-...+|++||++|++|++|..|++|+.
T Consensus       498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence               2269999998744 3466677899999999987777777776542  3455779999999999999999999997

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.3e-30  Score=213.35  Aligned_cols=244  Identities=30%  Similarity=0.510  Sum_probs=210.7

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ...+.+|...+..+.|+|++++|++++.|+.|++|+++...    ....+..|...+.++.|+++ +.++++++.|+.++
T Consensus        44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~  118 (289)
T cd00200          44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE----CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIK  118 (289)
T ss_pred             EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc----ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEE
Confidence            35567899999999999999999999999999999987532    23356688889999999987 56888888899999


Q ss_pred             EEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEEEcCC
Q 021319           93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      +||+++++...... ....+..+.++|++.++++++.++.+.+||++..+++..... ...+.++.|+++++.+++++.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  198 (289)
T cd00200         119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD  198 (289)
T ss_pred             EEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC
Confidence            99999777666554 334567899999999998888899999999987776655543 3478899999999999999999


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      +.+.+|+....+.+..+..|...+.+++++|++.++++++.||.|++||+.++..+..+..+...+.+++|+|++++|++
T Consensus       199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  278 (289)
T cd00200         199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS  278 (289)
T ss_pred             CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence            99999999887777777788889999999999999998888999999999988888888888889999999999999999


Q ss_pred             ecCCceEEEEE
Q 021319          251 ASEDLFIDISN  261 (314)
Q Consensus       251 ~s~d~~v~v~~  261 (314)
                      ++.|+.+++|+
T Consensus       279 ~~~d~~i~iw~  289 (289)
T cd00200         279 GSADGTIRIWD  289 (289)
T ss_pred             ecCCCeEEecC
Confidence            99999999995

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.2e-33  Score=224.40  Aligned_cols=234  Identities=17%  Similarity=0.325  Sum_probs=200.7

Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee
Q 021319           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH  144 (314)
Q Consensus        66 ~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  144 (314)
                      ..+|..+.|.|++ ..|++|+.-|.+.+|+...-...... .+...+.++.|++++.++++|..+|.|++|++.......
T Consensus        96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             ccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            4578999999985 67889999999999987432222222 234556689999999999999999999999986543322


Q ss_pred             eec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc
Q 021319          145 RRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (314)
Q Consensus       145 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~  223 (314)
                      ... +..++++++|+|.+..|+++++||.+++|+....+....+.+|...+.+++|+|....+|+|+.|..|++||.+++
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg  254 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG  254 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence            222 3367999999999999999999999999999888777788999999999999999999999999999999999999


Q ss_pred             EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcC-CCCeeEEEecCCcccc
Q 021319          224 LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNP-KYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       224 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~-~~~~la~~~~d~~~~~  300 (314)
                      .|+.++..|+..|..+.|+|++.+|+|+|.|..++++|.++-+.+..+. |+..+++++||| ...+|.+||.|+.++-
T Consensus       255 ~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh  333 (464)
T KOG0284|consen  255 SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH  333 (464)
T ss_pred             chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence            9999999999999999999999999999999999999999777777665 677899999999 4578899999987763

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-32  Score=219.74  Aligned_cols=277  Identities=19%  Similarity=0.296  Sum_probs=225.2

Q ss_pred             eeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           15 EYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      .|.||.+.|+|++=+|.. ..++||+.||.|+|||+....    ....+.+|.+.|..+++..   +.+++++.|++|+.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~----~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE----CIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ  133 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhh----hhheeecccCceeeEEecc---cceEEecCCcceee
Confidence            458999999999999987 789999999999999997643    2346789999999999975   46789999999999


Q ss_pred             EeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc-eeeEEeccCCCeEEEE-cCCc
Q 021319           94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLT-TGNG  171 (314)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~g  171 (314)
                      |-+.. ........++....+.....+..+++++  ..|.|||.....|+....++.. +.++.|+|....++.+ ..|+
T Consensus       134 wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr  210 (433)
T KOG0268|consen  134 WKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR  210 (433)
T ss_pred             eeccC-CcceeeeccccccccccccccccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence            98754 3334443444444555555666777775  4699999999999998888754 7889999987665554 5899


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE-EEEEeeecccCeEEEEEccCCcEEEE
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      .+.+||+....|+..+.. ....+.|+|+|.+-.+++|+.|-.+..||++... .+..+.+|-.+|.+++|||.|+-++|
T Consensus       211 sIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs  289 (433)
T KOG0268|consen  211 SIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS  289 (433)
T ss_pred             ceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence            999999999988876642 3346789999987789999999999999998764 35677889999999999999999999


Q ss_pred             ecCCceEEEEECCCCCeEEEEec--cCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          251 ASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~~~--~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      ||-|..|+|+.++.++-...+..  ...|.+|.||-|.+++++||+|        |.+|+|-
T Consensus       290 gsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd--------~nvRlWk  343 (433)
T KOG0268|consen  290 GSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD--------GNVRLWK  343 (433)
T ss_pred             ccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCC--------cceeeee
Confidence            99999999999988765444332  4579999999999999999977        5788884

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=2.6e-31  Score=207.95  Aligned_cols=284  Identities=21%  Similarity=0.340  Sum_probs=230.8

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCC------------CC-CCc-eeeEEeecCCCCEEEEEEcCC
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP------------HG-HGK-VKDIELRGHADSVDQLCWDPK   77 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~------------~~-~~~-~~~~~~~~h~~~v~~l~~~~~   77 (314)
                      +.+.++.|++++++-+|||||.+++|||.|.+|+|.|++.            +. +.. .....+-.|.+.|+++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            4466789999999999999999999999999999999861            00 000 111245579999999999997


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceee---eEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee----eccCc
Q 021319           78 HADLIATASGDKTVRLWDARSGKCSQ---QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR----RKFGY  150 (314)
Q Consensus        78 ~~~~l~s~~~D~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~  150 (314)
                      . .+|+||+.|++|+++|...-...+   .+.......++.|+|.|.+|++|.....+++||+.+.+....    -++..
T Consensus       184 e-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  184 E-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             h-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            4 799999999999999986543222   222334567899999999999999999999999999876543    34556


Q ss_pred             ceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee-eccc-ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE
Q 021319          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTA-GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~-~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~  228 (314)
                      .+.++.+++.++.+++++.||.+++|+--+.+++.++. .|.+ +|.+..|..+++++.+.+.|..+++|.+.++.++++
T Consensus       263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence            79999999999999999999999999998888887764 5654 688899999999999999999999999999999999


Q ss_pred             eeeccc-----CeEEEEEccCCcEEEEecC-CceEEEEECCCCCeEEE--EeccCccceeEEcCCCCeeEEEecCC
Q 021319          229 FTKLEW-----PVRTISFSHTGDYIASASE-DLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       229 ~~~~~~-----~v~~~~~sp~~~~l~s~s~-d~~v~v~~~~~~~~~~~--~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      +.+-..     .-....|+....|++.-.+ .+.+--||.+++..+..  +.|.+.++.+..+|.++.|.++|+|.
T Consensus       343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence            876421     1233458888888887665 36789999998765544  45678999999999999999999985

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.8e-31  Score=207.13  Aligned_cols=280  Identities=16%  Similarity=0.221  Sum_probs=209.3

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      ..|.||.+.|++++|+.||++|+|++.|++||||+++...+..-..++..-..+..+.+.|.|+...++++.-...++++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            45789999999999999999999999999999999875332211112222223456788999998888888888899999


Q ss_pred             EeCCCCc---eeee----------EEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCc-ceeeEEecc
Q 021319           94 WDARSGK---CSQQ----------AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-EVNEIAWNM  159 (314)
Q Consensus        94 wd~~~~~---~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~  159 (314)
                      |-....+   ....          .......+.+.....++++++++.|.+|.+|+++ ++.+..+.... .....+.+|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            9654321   1110          0112234556667788999999999999999998 66666655432 345677899


Q ss_pred             CCCeEEEEcCCceEEEEeC--------CCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-------E
Q 021319          160 TGEMFFLTTGNGTVEVLTY--------PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-------L  224 (314)
Q Consensus       160 ~~~~~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-------~  224 (314)
                      +|.++++++-.-.+.+|..        +....+.++.+|...+...+|+++.+.+++.+.||++++||.+-.       +
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk  318 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK  318 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence            9999999988888888863        123345678899999999999999999999999999999998532       2


Q ss_pred             EEEEeee--c--ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe--ccCccceeEEcCCCCeeEEEecC
Q 021319          225 CVRTFTK--L--EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       225 ~~~~~~~--~--~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      .+++...  +  ......++.+|+|+.||.+. ...++++..++|+..-.+.  |.+.|.+++|+|+|+++|++|+-
T Consensus       319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr  394 (420)
T KOG2096|consen  319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR  394 (420)
T ss_pred             HhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence            2333321  1  12334799999999998554 3458999999988776554  57889999999999999999953

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.4e-30  Score=207.33  Aligned_cols=273  Identities=23%  Similarity=0.354  Sum_probs=217.0

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC--CEEEEEeCCCcEEEE
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA--DLIATASGDKTVRLW   94 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~D~~v~iw   94 (314)
                      ..|.+.|.+|.-.  ++.|+||++||.+|+|+..-    . ....+.||.++|.+++|.-.+.  ..++++|.|.++++|
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G----k-~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw  174 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG----K-SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW  174 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecCC----c-eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence            3588899999876  78999999999999999752    2 2346789999999888854332  358999999999999


Q ss_pred             eCCCCceeee-----EEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC--e-----------------------Eee
Q 021319           95 DARSGKCSQQ-----AELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--K-----------------------PIH  144 (314)
Q Consensus        95 d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~-----------------------~~~  144 (314)
                      -.+.+.....     ..++....++...+++..+++|+.|..+.+|+..+.  .                       |+.
T Consensus       175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            8877653211     123445567888999999999999999999993210  0                       111


Q ss_pred             ee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc
Q 021319          145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (314)
Q Consensus       145 ~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~  223 (314)
                      .. -+...+.++.|++ ...++.++.|.+++.||+.......++.+ +...+|++.+|..++||+|+.|..+++||.+++
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCC
Confidence            11 1234678899988 77788899999999999988776665543 567899999999999999999999999999864


Q ss_pred             ---EEEEEeeecccCeEEEEEccCC-cEEEEecCCceEEEEECCCCC-eEEEEe-ccCccceeEEcCCCCeeEEEecCCc
Q 021319          224 ---LCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGR-TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       224 ---~~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~-~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                         ...++|.+|..-|.++.|+|.. .+|+|||.|+.+++||+++.+ ++..+. |...|.++.|+. +.++++||.|+.
T Consensus       333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~  411 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNK  411 (423)
T ss_pred             CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcce
Confidence               2457888999999999999976 568899999999999999877 776664 567899999984 779999999986


Q ss_pred             cc
Q 021319          298 KY  299 (314)
Q Consensus       298 ~~  299 (314)
                      ++
T Consensus       412 l~  413 (423)
T KOG0313|consen  412 LR  413 (423)
T ss_pred             EE
Confidence            44

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.5e-30  Score=204.79  Aligned_cols=284  Identities=17%  Similarity=0.174  Sum_probs=234.3

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ....|..|+..|.+|+.+|+.++++|||.|....||+..++.    ...++.+|+++|.++.|+.+ +.+||||+.+|.|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v  130 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----FAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKV  130 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----ceeEecCCCCceEEEEEccC-ceEEEecCCCccE
Confidence            345678999999999999999999999999999999987643    34578999999999999987 5799999999999


Q ss_pred             EEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcC
Q 021319           92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      +||...++.....+. .-..+.-+.|+|-+..|+.|+.||.+.+|.+.+....+.. -+..++.+=.+.|+|+.++++..
T Consensus       131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~  210 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD  210 (399)
T ss_pred             EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence            999999887655543 2344556899999999999999999999999885333332 24556777789999999999999


Q ss_pred             CceEEEEeCCCCCceeeeee-cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee--------cccCeEE--
Q 021319          170 NGTVEVLTYPSLRPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--------LEWPVRT--  238 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~--  238 (314)
                      +|++++|+..+..++..+.+ .....++++++..+..+..|+.++.+++-+-.+++.+.-..+        ++..+.+  
T Consensus       211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence            99999999999988877653 334578999999999999999999999999888887655442        2333444  


Q ss_pred             -EEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCccccc
Q 021319          239 -ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA  301 (314)
Q Consensus       239 -~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~  301 (314)
                       +.++..=++.|+|+-||+|.|||..+.++.++..|...|..+.|-+ ..+|++++.|+..++|
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~w  353 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQW  353 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEee
Confidence             4455555789999999999999999999999999989999999998 7788899988544433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.7e-30  Score=240.21  Aligned_cols=239  Identities=17%  Similarity=0.317  Sum_probs=197.6

Q ss_pred             ccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           19 HKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        19 H~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      +...|.+++|+|. +.+|++++.||+|++||+.+..    ....+.+|.+.|.+++|+|.++.+|+||+.|++|++||++
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~----~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~  606 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ----LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN  606 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe----EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence            4568999999875 7899999999999999987531    2345779999999999998667899999999999999999


Q ss_pred             CCceeeeEEecCceEEEEEc-cCCCEEEEEeCCCcEEEEEccCCe-Eeeee-ccCcceeeEEeccCCCeEEEEcCCceEE
Q 021319           98 SGKCSQQAELSGENINITYK-PDGTHIAVGNRDDELTILDVRKFK-PIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~  174 (314)
                      ++.+...........++.|. +++..+++|+.|+.|++||++..+ ++... .+...+..+.|. ++..+++++.|+.++
T Consensus       607 ~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ik  685 (793)
T PLN00181        607 QGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLK  685 (793)
T ss_pred             CCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEE
Confidence            98887776666666778884 579999999999999999998754 33332 345678889996 678899999999999


Q ss_pred             EEeCCC------CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe-------------eecccC
Q 021319          175 VLTYPS------LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-------------TKLEWP  235 (314)
Q Consensus       175 ~~~~~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-------------~~~~~~  235 (314)
                      +|++..      ..++..+.+|...+.+++|+|++.+||+|+.|+.|++|+......+..+             ..+...
T Consensus       686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  765 (793)
T PLN00181        686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF  765 (793)
T ss_pred             EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence            999863      2466778899999999999999999999999999999998654332211             123346


Q ss_pred             eEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          236 VRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       236 v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      |.+++|+|++.+|++|+.||.|+||++
T Consensus       766 V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        766 ISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999999999999999999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-30  Score=229.32  Aligned_cols=274  Identities=18%  Similarity=0.238  Sum_probs=233.4

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      .-.+.|..++|+|....|+++-..|.|++||..-..    .--++.+|.++|..++|+|.. .+++||+.|-.|++|+..
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t----li~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT----LIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhh----HHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecc
Confidence            345689999999999999999999999999986421    223577999999999999985 599999999999999999


Q ss_pred             CCceeeeEEecCceE-EEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEE
Q 021319           98 SGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEV  175 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  175 (314)
                      +.+|..++..+-..+ .+.|++.-.++++++.|.+|+||+..+.+.+... -+..-+.+..|+|..+.+++++-|.++++
T Consensus        82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence            999988776555444 5789999999999999999999999988877664 35567899999999999999999999999


Q ss_pred             EeCCCCCc-----------------------------eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE-
Q 021319          176 LTYPSLRP-----------------------------LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-  225 (314)
Q Consensus       176 ~~~~~~~~-----------------------------~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~-  225 (314)
                      ||....+.                             ...+.+|..+|+.++|+|.-..+++|+.|..|++|.+...+. 
T Consensus       162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW  241 (1202)
T KOG0292|consen  162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW  241 (1202)
T ss_pred             EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence            99643221                             112457889999999999999999999999999999976543 


Q ss_pred             -EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCC
Q 021319          226 -VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       226 -~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                       +.+..+|-.+|+++-|+|....++|.|+|+.++|||+.+-+.++++.. .++-..++-||..+++|.|-+.+
T Consensus       242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG  314 (1202)
T KOG0292|consen  242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG  314 (1202)
T ss_pred             eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence             566778999999999999999999999999999999999888888864 35677899999999998766543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.4e-30  Score=199.55  Aligned_cols=267  Identities=18%  Similarity=0.243  Sum_probs=215.6

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      ...|.+|.|+|.++.|+.++.||++++|++....    ....+ .|..++.+.+|.+.  ..+++|+.||.|+++|+.++
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~~~-~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKLKF-KHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh----hhhhe-ecCCceeeeeccCC--ceEEEeccCceEEEEEecCC
Confidence            5689999999999999999999999999997642    12223 58999999999874  46889999999999999998


Q ss_pred             ceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCC
Q 021319          100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP  179 (314)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  179 (314)
                      .-.....+...+.++.+.+....+++|++|++|++||++..........+..+.+  .+..++.+++++.+..+.+|+++
T Consensus        86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~--~~v~g~~LvVg~~~r~v~iyDLR  163 (323)
T KOG1036|consen   86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYC--MDVSGNRLVVGTSDRKVLIYDLR  163 (323)
T ss_pred             cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEE--EeccCCEEEEeecCceEEEEEcc
Confidence            8777767777788899999889999999999999999998665555555544444  35678999999999999999998


Q ss_pred             CCCceeee--eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc----EEEEEeeec---------ccCeEEEEEccC
Q 021319          180 SLRPLDTV--VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----LCVRTFTKL---------EWPVRTISFSHT  244 (314)
Q Consensus       180 ~~~~~~~~--~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~---------~~~v~~~~~sp~  244 (314)
                      ......+.  ..-...+.|+++-|++.-+|+++-||.|.+=.++..    .....|+.|         -.||++++|+|-
T Consensus       164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence            75532221  234567899999999888999999998777655443    112233333         248999999999


Q ss_pred             CcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecC
Q 021319          245 GDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      ...||||+.||.|.+||...-+.+.++.- ..+|.+++|+-+|.+||.++..
T Consensus       244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence            99999999999999999998888877753 4679999999999999999853

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.3e-31  Score=201.93  Aligned_cols=239  Identities=21%  Similarity=0.327  Sum_probs=185.2

Q ss_pred             cccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           20 KKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        20 ~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      .+.+..|+|++.. +.+++|+.||++||||.....   .+...++.|+..|.++.|++.....++++|.|++||+|+...
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s---~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS---KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCC---cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            5689999999985 578899999999999964322   233467899999999999998888888999999999999887


Q ss_pred             CceeeeEEecC-ceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319           99 GKCSQQAELSG-ENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL  176 (314)
Q Consensus        99 ~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  176 (314)
                      ++.+.++..+. .+....|+| ..+.+++++.|+.+++||++..                                    
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~------------------------------------  180 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP------------------------------------  180 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC------------------------------------
Confidence            77666654332 234566776 3566677777777777776542                                    


Q ss_pred             eCCCCCceeeeeecccceEEEEECC-CCCEEEEeeCCCeEEEeeCCCcE-EEEEeeecccCeEEEEEccC-CcEEEEecC
Q 021319          177 TYPSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHT-GDYIASASE  253 (314)
Q Consensus       177 ~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~  253 (314)
                          .+ ...+..|..++.|+.|+. +..+++||+.|+.|+.||++..+ .+..+.+|..+|+.++|||. ...|||+|-
T Consensus       181 ----gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY  255 (311)
T KOG0277|consen  181 ----GK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY  255 (311)
T ss_pred             ----Cc-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc
Confidence                11 123567888999999997 45679999999999999998754 45677899999999999997 578999999


Q ss_pred             CceEEEEECCCCCe-EEEEe-ccCccceeEEcC-CCCeeEEEecCCcccccccceEEecc
Q 021319          254 DLFIDISNVHTGRT-VHQIP-CRAAMNSVEWNP-KYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       254 d~~v~v~~~~~~~~-~~~~~-~~~~i~~v~~~~-~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      |-++++||...+.- +.+.. |..-+..+.||+ +..++|++|=|        +.+.||+
T Consensus       256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD--------e~l~Vw~  307 (311)
T KOG0277|consen  256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD--------ELLYVWN  307 (311)
T ss_pred             cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccc--------cceeeec
Confidence            99999999986543 33343 344588999998 56889999955        5566775

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=7e-30  Score=224.05  Aligned_cols=246  Identities=18%  Similarity=0.282  Sum_probs=206.3

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      .+..+..|.++|+.|+|+|++.+++|||.|-.|+||+...+    ..-..+.||-+.|..+.|++.. .+|+|+|.|.+|
T Consensus        43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r----rclftL~GHlDYVRt~~FHhey-PWIlSASDDQTI  117 (1202)
T KOG0292|consen   43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR----RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTI  117 (1202)
T ss_pred             HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc----eehhhhccccceeEEeeccCCC-ceEEEccCCCeE
Confidence            44557899999999999999999999999999999999753    2345788999999999999875 599999999999


Q ss_pred             EEEeCCCCceeeeEEecCceE-EEEEccCCCEEEEEeCCCcEEEEEccCCeEe---------------------------
Q 021319           92 RLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPI---------------------------  143 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------------------------  143 (314)
                      |||+..+++|+.....+.+.+ +..|+|....+++++-|.+|++||+.-.+..                           
T Consensus       118 rIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV  197 (1202)
T KOG0292|consen  118 RIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV  197 (1202)
T ss_pred             EEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence            999999999999887776654 5679999999999999999999998532110                           


Q ss_pred             -eee--ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEe
Q 021319          144 -HRR--KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW  218 (314)
Q Consensus       144 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vw  218 (314)
                       +..  -+...++-++|+|.-+.++++++|..+++|.+...+  .+.+..+|-.+|.++-|+|....+++.+.|++|+||
T Consensus       198 VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  198 VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW  277 (1202)
T ss_pred             eeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence             000  123446778999999999999999999999986543  466778999999999999999999999999999999


Q ss_pred             eCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319          219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      |+.+.+.++++.........++-+|..+++|.|-..| +.|+.+.
T Consensus       278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VFkle  321 (1202)
T KOG0292|consen  278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVFKLE  321 (1202)
T ss_pred             ecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEEEEc
Confidence            9999999999988788899999999999888554444 4444443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=3.7e-31  Score=208.47  Aligned_cols=283  Identities=20%  Similarity=0.318  Sum_probs=235.8

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCcee----eEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK----DIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .|.++.+.|..|||||++|+||+.||.|.+||..++...+-.    .-.+..+.++|.|++|+.+ .+.+++|+.||.|+
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKIK  288 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCCcEE
Confidence            467888999999999999999999999999998764322111    1134568899999999976 67999999999999


Q ss_pred             EEeCCCCceeeeEE--ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcC
Q 021319           93 LWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        93 iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      +|-+.+|.|.+.+.  ....+.++.|+.|+..+.+++.|.++++.-+++++.++... +..-++...|.++|..+++++.
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs  368 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS  368 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence            99999999988764  34556789999999999999999999999999988776543 4455888999999999999999


Q ss_pred             CceEEEEeCCCCCceeeee--ecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeec---ccCeEEEEEcc
Q 021319          170 NGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKL---EWPVRTISFSH  243 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~sp  243 (314)
                      ||++++|+..+.+++.++.  +...+++.+-.-|.+ ..+++|.+..+|.+.++ +++.++.+...   ....-+.+.||
T Consensus       369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSp  447 (508)
T KOG0275|consen  369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSP  447 (508)
T ss_pred             CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecC
Confidence            9999999998888777764  345567888777755 56888999999999998 57777777532   34566778999


Q ss_pred             CCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319          244 TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  309 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~  309 (314)
                      .|.++.+.++|+.++.+.+.+|++-+.++ +..-+-.++.||..++||+=++|        |.+|+|
T Consensus       448 kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED--------gllKLW  506 (508)
T KOG0275|consen  448 KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSED--------GLLKLW  506 (508)
T ss_pred             CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhccc--------chhhhc
Confidence            99999999999999999999999888876 44567889999999999999866        678888

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.2e-30  Score=211.16  Aligned_cols=247  Identities=17%  Similarity=0.249  Sum_probs=204.5

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+++.||..+|..+.||||..+|++|+.|..+++||+.++....  .+ -.+|...+.+.+|.|++ ..+++|+.|+++.
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~--~y-~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH--LY-PSGLGFSVSSCAWCPDG-FRFVTGSPDRTII  337 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh--hc-ccCcCCCcceeEEccCC-ceeEecCCCCcEE
Confidence            46788999999999999999999999999999999998754221  11 23466889999999985 5788999999999


Q ss_pred             EEeCCCCceeeeEE-e-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319           93 LWDARSGKCSQQAE-L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        93 iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      .||++... ....+ . ......+++++||+++++.+.|..+.+++.+....+..+.....+.+...+.+++++++...+
T Consensus       338 ~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~  416 (519)
T KOG0293|consen  338 MWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD  416 (519)
T ss_pred             EecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence            99986432 22111 1 123567899999999999999999999998776555455556678889999999999999999


Q ss_pred             ceEEEEeCCCCCceeeeeecccceE--EEEECC-CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCC-c
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCY--CIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG-D  246 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~--~i~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~  246 (314)
                      ..+.+|++...+.+..+.+|..+-+  .-+|.. +.+++|+|+.|+.|++|+..+++.+..+.+|...|++++|+|.. .
T Consensus       417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~  496 (519)
T KOG0293|consen  417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE  496 (519)
T ss_pred             CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence            9999999998777788888876533  334543 45799999999999999999999999999999999999999975 6


Q ss_pred             EEEEecCCceEEEEECCC
Q 021319          247 YIASASEDLFIDISNVHT  264 (314)
Q Consensus       247 ~l~s~s~d~~v~v~~~~~  264 (314)
                      ++||||.||+|+||....
T Consensus       497 m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  497 MFASASDDGTIRIWGPSD  514 (519)
T ss_pred             HhhccCCCCeEEEecCCc
Confidence            899999999999997653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=6.7e-30  Score=209.49  Aligned_cols=296  Identities=18%  Similarity=0.302  Sum_probs=243.2

Q ss_pred             eeeeeccceeee----cc--cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC
Q 021319            6 IPFKNLHSREYT----GH--KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA   79 (314)
Q Consensus         6 ~~~~~~~~~~~~----gH--~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~   79 (314)
                      .|..++..+.+.    +|  .+.|++|.|+|..+.+++||.|++++||.++...+..++.+.+.  .-+|.+++|.|++.
T Consensus       193 Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~  270 (514)
T KOG2055|consen  193 LPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGH  270 (514)
T ss_pred             CCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCc
Confidence            555555554442    44  46899999999999999999999999999987666666666664  56899999999877


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEecCc----eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeE
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAELSGE----NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI  155 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  155 (314)
                      ..+++++.-..+..||+.+.+..+.....+.    .-....+|++++|++.+..|.|.+.-..+...+...+....+..+
T Consensus       271 ~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~  350 (514)
T KOG2055|consen  271 SVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDF  350 (514)
T ss_pred             eEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeE
Confidence            6899999999999999988876544332221    224667899999999999999999999999999999998999999


Q ss_pred             EeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecc-cceEEEEECCCCCEEEEeeCCCeEEEeeCCC------cEEEEE
Q 021319          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRT  228 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~------~~~~~~  228 (314)
                      .|+.++..+++.+++|.|++|++.....+..+.... -.-++++.++++++||+|+..|.|.|||..+      .+.+++
T Consensus       351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~  430 (514)
T KOG2055|consen  351 TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT  430 (514)
T ss_pred             EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh
Confidence            999999999999999999999998887776665322 2347888999999999999999999999653      455667


Q ss_pred             eeecccCeEEEEEccCCcEEEEecC--CceEEEEECCCCCeEEEEecc----CccceeEEcCCCCeeEEEecCCcccccc
Q 021319          229 FTKLEWPVRTISFSHTGDYIASASE--DLFIDISNVHTGRTVHQIPCR----AAMNSVEWNPKYNLLAYAGDDKNKYQAD  302 (314)
Q Consensus       229 ~~~~~~~v~~~~~sp~~~~l~s~s~--d~~v~v~~~~~~~~~~~~~~~----~~i~~v~~~~~~~~la~~~~d~~~~~~~  302 (314)
                      +.+....|+++.|+|++++||-+|.  ...+++-.+........++..    +.++|++|+|++.+||.|.++       
T Consensus       431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~-------  503 (514)
T KOG2055|consen  431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA-------  503 (514)
T ss_pred             hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC-------
Confidence            7677778999999999999998875  567899999888888888753    358999999999999999966       


Q ss_pred             cceEEeccc
Q 021319          303 EGVFRIYGF  311 (314)
Q Consensus       303 ~~~~~~~~~  311 (314)
                       |-+.+|-+
T Consensus       504 -grv~l~kL  511 (514)
T KOG2055|consen  504 -GRVHLFKL  511 (514)
T ss_pred             -CceeeEee
Confidence             56667654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=223.74  Aligned_cols=272  Identities=21%  Similarity=0.358  Sum_probs=231.4

Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      |...+.+.+|.  ..++++++.|+++++|+..+.   ......+.||.+.|.++.+.. +++.+++|+.|.++++||..+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~---~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG---YLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccc---eEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC
Confidence            56688899988  668999999999999998652   344445889999999999975 567999999999999999999


Q ss_pred             CceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319           99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (314)
                      |.|...+..+...+. ++.-....+++|+.|.++++|++.+++.+.... +..+|.++..+  +..+++++.++.+.+|+
T Consensus       281 g~C~~~l~gh~stv~-~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~  357 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVR-CLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD  357 (537)
T ss_pred             CcEEEEecCCCceEE-EEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence            999988875444432 233456677888999999999999998888776 88889998876  89999999999999999


Q ss_pred             CCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecCCce
Q 021319          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLF  256 (314)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~  256 (314)
                      ....+++..+.+|...|+++.+.+. ..+++|+.|++|++||+++. +|+.++.+|..-+..+  ...+++|++++.|+.
T Consensus       358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~~  434 (537)
T KOG0274|consen  358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADGT  434 (537)
T ss_pred             hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEecccccc
Confidence            9999999999999999999998876 89999999999999999999 9999999988777444  467899999999999


Q ss_pred             EEEEECCCCCeEEEEecc--CccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          257 IDISNVHTGRTVHQIPCR--AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       257 v~v~~~~~~~~~~~~~~~--~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      |++||..++..++.+...  ..|.++++.  ...++.++.|        |.++||++.
T Consensus       435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~--------~~~~l~dl~  482 (537)
T KOG0274|consen  435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDD--------GSVKLWDLR  482 (537)
T ss_pred             EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecC--------CeeEEEecc
Confidence            999999999999888763  677777776  4677778877        678899885

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.1e-30  Score=218.64  Aligned_cols=240  Identities=18%  Similarity=0.283  Sum_probs=213.0

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceE-EEEEccCCCEEEEEeCCCcEEEEEccCC
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKF  140 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~  140 (314)
                      +..|++.|.++.++|.. .+++++--.|.|.|||..+...++.+.....++ ++.|-+--+++++|+.|..|++|+..+.
T Consensus         9 ~~~rSdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             hhccCCceeeeecCCCC-ceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence            44588999999999986 488889999999999999999888887766554 4667777889999999999999999999


Q ss_pred             eEeeeecc-CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC-ceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEE
Q 021319          141 KPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSL  217 (314)
Q Consensus       141 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~v  217 (314)
                      ..++..+. .--+++++-||+.++++++++|-.+++|+++..- +.+++.+|+.-|.+++|+|. ...+|+++.|++|++
T Consensus        88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV  167 (794)
T KOG0276|consen   88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV  167 (794)
T ss_pred             eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence            88887653 4458999999999999999999999999997654 56778999999999999994 578999999999999


Q ss_pred             eeCCCcEEEEEeeecccCeEEEEEccCC--cEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEec
Q 021319          218 WDISEMLCVRTFTKLEWPVRTISFSHTG--DYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGD  294 (314)
Q Consensus       218 wd~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~  294 (314)
                      |.+.+..+..++++|+..|++++|-|.|  .||+||+.|..++|||..+...++++. |...|+.+.|||.-+++++||+
T Consensus       168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE  247 (794)
T KOG0276|consen  168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE  247 (794)
T ss_pred             EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecC
Confidence            9999999999999999999999998754  799999999999999999988888876 5668999999999999999997


Q ss_pred             CCcccccccceEEecc
Q 021319          295 DKNKYQADEGVFRIYG  310 (314)
Q Consensus       295 d~~~~~~~~~~~~~~~  310 (314)
                      |        ||+|||+
T Consensus       248 D--------GTvriWh  255 (794)
T KOG0276|consen  248 D--------GTVRIWN  255 (794)
T ss_pred             C--------ccEEEec
Confidence            7        6888886

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=9e-30  Score=211.40  Aligned_cols=285  Identities=21%  Similarity=0.274  Sum_probs=214.7

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCcee-eEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      .+...+.+|...|.++++.|.|-+|+|||.|-.|++||+.--...-.. ..-.++-...|+.+.|++.+. .|+..+...
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~a  236 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSA  236 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCc
Confidence            355667899999999999999999999999999999998532111100 111234456689999999864 555667778


Q ss_pred             cEEEEeCCCCceeeeE----------EecCce---EEEEEccCCC-EEEEEeCCCcEEEEEccCCeEe-eeecc------
Q 021319           90 TVRLWDARSGKCSQQA----------ELSGEN---INITYKPDGT-HIAVGNRDDELTILDVRKFKPI-HRRKF------  148 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~----------~~~~~~---~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-~~~~~------  148 (314)
                      ..+++|-.........          +.++++   .+.+|+|+.+ .+++++.|+++++||+.+.+.. ..++.      
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            8999997544332211          223333   3467999764 5778899999999999765432 22222      


Q ss_pred             CcceeeEEeccCCCeEEEEcCCceEEEEeCCCC--Cceee-eeeccc--ceEEEEECCCCCEEEEeeCCCeEEEeeCCCc
Q 021319          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL--RPLDT-VVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (314)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~-~~~~~~--~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~  223 (314)
                      ...+..++|+++++.+++++.+|.|.+|+....  ++... -..|..  .|+|++||++|++|++-+.|+++++||+++.
T Consensus       317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            135788999999999999999999999997543  23222 246776  8999999999999999999999999999876


Q ss_pred             E-EEEEeeec--ccCeEEEEEccCCcEEEEecC------CceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEe
Q 021319          224 L-CVRTFTKL--EWPVRTISFSHTGDYIASASE------DLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       224 ~-~~~~~~~~--~~~v~~~~~sp~~~~l~s~s~------d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~  293 (314)
                      + ++....+.  ..+-..++|||+.++|+||+.      .+.+.++|..+-..+.++.. ..+|..+.|||..+.|..++
T Consensus       397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs  476 (641)
T KOG0772|consen  397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS  476 (641)
T ss_pred             ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence            4 34444332  346778999999999999965      37899999999888888765 45799999999999988888


Q ss_pred             cCC
Q 021319          294 DDK  296 (314)
Q Consensus       294 ~d~  296 (314)
                      .|+
T Consensus       477 gdG  479 (641)
T KOG0772|consen  477 GDG  479 (641)
T ss_pred             CCC
Confidence            884

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.6e-28  Score=188.84  Aligned_cols=233  Identities=21%  Similarity=0.368  Sum_probs=192.2

Q ss_pred             EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce---eeeE--EecCceEEEEEccCCCEEEEEeCCCcEEE
Q 021319           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC---SQQA--ELSGENINITYKPDGTHIAVGNRDDELTI  134 (314)
Q Consensus        60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~---~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  134 (314)
                      ..+++|.+.+..++|+|..+.+|+|||.|+.||+|+...+.-   ...+  ..+..+.+++|+|.|++|++++.|.++.|
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI   87 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence            467899999999999997566899999999999999875332   1111  12344567999999999999999999999


Q ss_pred             EEccC--CeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCC---CCceeeeeecccceEEEEECCCCCEEEE
Q 021319          135 LDVRK--FKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS---LRPLDTVVAHTAGCYCIAIDPMGRYFAV  208 (314)
Q Consensus       135 ~d~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~t  208 (314)
                      |.-..  ++.+..++ +..++.+++|+++|+++++++.+..+.+|....   ......++.|...|..+.|+|...+|++
T Consensus        88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S  167 (312)
T KOG0645|consen   88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFS  167 (312)
T ss_pred             eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEE
Confidence            97543  34444443 457899999999999999999999999998753   3456677899999999999999999999


Q ss_pred             eeCCCeEEEeeCC---CcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319          209 GSADSLVSLWDIS---EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       209 ~~~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~  285 (314)
                      ++-|.+|++|+-.   +..+.+++.+|...|.+++|+|.|..|++++.|+.++||-..+.-.   ..++..++.|+|.  
T Consensus       168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~v~W~--  242 (312)
T KOG0645|consen  168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYDVPWD--  242 (312)
T ss_pred             eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccceEeeeec--
Confidence            9999999999865   4678999999999999999999999999999999999997653211   1245689999998  


Q ss_pred             CCeeEEEecCCc
Q 021319          286 YNLLAYAGDDKN  297 (314)
Q Consensus       286 ~~~la~~~~d~~  297 (314)
                      ...||+++.|..
T Consensus       243 ~~~IaS~ggD~~  254 (312)
T KOG0645|consen  243 NGVIASGGGDDA  254 (312)
T ss_pred             ccceEeccCCCE
Confidence            558899998843

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.2e-30  Score=198.44  Aligned_cols=202  Identities=23%  Similarity=0.417  Sum_probs=183.9

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      .|+..|..++|+.|.++|+||+.++.+||||++..   ..+..++.+|.+.|..+.|...+ +.|+|++.|++||+||.+
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p---~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~r  173 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP---KAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHR  173 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCC---CCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEec
Confidence            68999999999999999999999999999999753   34556889999999999998765 577788999999999999


Q ss_pred             CCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (314)
                      ++..++.+++...+.++.++++|.+|.++ ..+.|.+||..++.+++.++.+..+.+...+|....+++++++..++.||
T Consensus       174 Tgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD  252 (334)
T KOG0278|consen  174 TGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD  252 (334)
T ss_pred             cCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence            99999999999999999999999988766 45789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeee-eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319          178 YPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (314)
Q Consensus       178 ~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~  224 (314)
                      +.+.+.+..+ .+|.++|.|+.|+|+|...|+|+.||+|++|.+..++
T Consensus       253 y~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  253 YNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            9988877775 7999999999999999999999999999999986553

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3.2e-29  Score=224.57  Aligned_cols=289  Identities=18%  Similarity=0.309  Sum_probs=228.4

Q ss_pred             eecc-cccEEEEEECCCCCEEEEee--CCCcEEEeecCCCCCC-----c---eeeEEeecCCCCEEEEEEcCCCCCEEEE
Q 021319           16 YTGH-KKKVHSVAWNCTGTKLASGS--VDQTARVWHIEPHGHG-----K---VKDIELRGHADSVDQLCWDPKHADLIAT   84 (314)
Q Consensus        16 ~~gH-~~~V~~v~~s~~g~~l~s~~--~D~~v~iw~~~~~~~~-----~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s   84 (314)
                      .-+| ...|.++..+|||..++|||  .|+.++||+.+.-...     .   ........|.+.|.|+.|+|++ .+||+
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAs   86 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLAS   86 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEee
Confidence            3455 45699999999999999999  9999999997542100     0   1112345799999999999985 79999


Q ss_pred             EeCCCcEEEEeCCC----Cc--------------eeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee
Q 021319           85 ASGDKTVRLWDARS----GK--------------CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR  145 (314)
Q Consensus        85 ~~~D~~v~iwd~~~----~~--------------~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  145 (314)
                      ||.|+.|.||....    ..              +...+ .+...+..++|+|++.++++++.|++|.+|+.++++.+..
T Consensus        87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v  166 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV  166 (942)
T ss_pred             ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence            99999999998762    00              11111 2345567799999999999999999999999999977766


Q ss_pred             ec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeec------ccceEEEEECCCCCEEEEeeC----CCe
Q 021319          146 RK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH------TAGCYCIAIDPMGRYFAVGSA----DSL  214 (314)
Q Consensus       146 ~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~t~~~----dg~  214 (314)
                      .+ +...+..+.|.|.|+++++.+.|+++.+|...+....+.+..+      ..-.+.+.|+|||.+|++.-.    --+
T Consensus       167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~  246 (942)
T KOG0973|consen  167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST  246 (942)
T ss_pred             eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce
Confidence            54 4567889999999999999999999999996654333333222      223678999999999987743    236


Q ss_pred             EEEeeCCCcEEEEEeeecccCeEEEEEccC------C-----------cEEEEecCCceEEEEECCCCCeEEEEec--cC
Q 021319          215 VSLWDISEMLCVRTFTKLEWPVRTISFSHT------G-----------DYIASASEDLFIDISNVHTGRTVHQIPC--RA  275 (314)
Q Consensus       215 i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~------~-----------~~l~s~s~d~~v~v~~~~~~~~~~~~~~--~~  275 (314)
                      +.|.+-.+.+.-..+-+|..++.+++|+|.      .           ..+|+||.|+.+.||.....+++..+.+  ..
T Consensus       247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~  326 (942)
T KOG0973|consen  247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK  326 (942)
T ss_pred             eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence            889888888877888999999999999983      1           1689999999999999988888876553  56


Q ss_pred             ccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          276 AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       276 ~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +|..++|+|||..|..+|-|        |++.+.+|||
T Consensus       327 SI~DmsWspdG~~LfacS~D--------GtV~~i~Fee  356 (942)
T KOG0973|consen  327 SIVDMSWSPDGFSLFACSLD--------GTVALIHFEE  356 (942)
T ss_pred             ceeeeeEcCCCCeEEEEecC--------CeEEEEEcch
Confidence            89999999999999999988        5666777765

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=7e-30  Score=195.38  Aligned_cols=237  Identities=19%  Similarity=0.267  Sum_probs=202.5

Q ss_pred             EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC---ceEEEEEcc-CCCEEEEEeCCCcEEEE
Q 021319           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKP-DGTHIAVGNRDDELTIL  135 (314)
Q Consensus        60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~-~~~~l~~~~~d~~i~i~  135 (314)
                      .++.+|...|.+++|+.++ ..+++|+.|+++++|++...+........+   ....++|.| +...+++++.|..|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            3567899999999999875 689999999999999998775444433322   233466665 56788999999999999


Q ss_pred             EccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeE
Q 021319          136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLV  215 (314)
Q Consensus       136 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i  215 (314)
                      |.+..++...+....+-..+.|+|+|.+++++..+..+..++.+..+.+...+ ....+..++|+.++.+++.....|+|
T Consensus        93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v  171 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV  171 (313)
T ss_pred             EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence            99999999998888888889999999999999999999999988777665443 34557888999999998888889999


Q ss_pred             EEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEec
Q 021319          216 SLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGD  294 (314)
Q Consensus       216 ~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~  294 (314)
                      .|......+.++.++.|.....||.|+|+|+|||+||.|..+.+||+..--.++.++ +.-+|+.+.||.+++|||+||+
T Consensus       172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE  251 (313)
T KOG1407|consen  172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE  251 (313)
T ss_pred             EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc
Confidence            999999999999999999999999999999999999999999999998877777765 4669999999999999999999


Q ss_pred             CCcc
Q 021319          295 DKNK  298 (314)
Q Consensus       295 d~~~  298 (314)
                      |..+
T Consensus       252 Dh~I  255 (313)
T KOG1407|consen  252 DHFI  255 (313)
T ss_pred             cceE
Confidence            8643

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=2.3e-30  Score=209.42  Aligned_cols=242  Identities=19%  Similarity=0.352  Sum_probs=206.7

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      .+.+|.|-.+.|+++.|.+++++++++++|+.+++|+++...    ....+.||++.|.++.|..... .+++|+.|.+|
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r----~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRti  285 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR----LRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTI  285 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh----hhhhhcccccceeeehhhcccc-ceeeccccchh
Confidence            445677888899999999999999999999999999997532    2346889999999999986543 48999999999


Q ss_pred             EEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCc
Q 021319           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG  171 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  171 (314)
                      ++||+.+..|.+.....+....+...  ...+++|..|++|++||.+...+......+..+.++..++++..+++++.+.
T Consensus       286 K~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd  363 (459)
T KOG0288|consen  286 KLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD  363 (459)
T ss_pred             hhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC
Confidence            99999999998876655544444443  4567899999999999999999998888888999999999999999999999


Q ss_pred             eEEEEeCCCCCceeeeeec----ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC--eEEEEEccCC
Q 021319          172 TVEVLTYPSLRPLDTVVAH----TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP--VRTISFSHTG  245 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--v~~~~~sp~~  245 (314)
                      ++.++++........+...    ....+.+.|||++.|+|+|+.||.|+||++.++++.+.+.....+  |.+++|+|.|
T Consensus       364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG  443 (459)
T ss_pred             ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence            9999999877655554332    234788999999999999999999999999999998888765544  9999999999


Q ss_pred             cEEEEecCCceEEEE
Q 021319          246 DYIASASEDLFIDIS  260 (314)
Q Consensus       246 ~~l~s~s~d~~v~v~  260 (314)
                      .+|++++.+..+.+|
T Consensus       444 ~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  444 SGLLSADKQKAVTLW  458 (459)
T ss_pred             chhhcccCCcceEec
Confidence            999999999999998

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=9.7e-30  Score=202.59  Aligned_cols=240  Identities=21%  Similarity=0.287  Sum_probs=210.7

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRK  139 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  139 (314)
                      .+.||.+-|.++++.|. ++++++|+.|++++|||+.+|+....+..+ .....+++++-..+|++++.|+.++.||++.
T Consensus       146 Vi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             hhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence            46799999999999997 589999999999999999999877766533 3344688999999999999999999999998


Q ss_pred             CeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEe
Q 021319          140 FKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW  218 (314)
Q Consensus       140 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vw  218 (314)
                      .+.+..+. +-..+.++..+|..+.+++++.|..+++||.+....+..+.+|...|..+.+.|....+++|+.|++|++|
T Consensus       225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW  304 (460)
T KOG0285|consen  225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW  304 (460)
T ss_pred             hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence            88776653 44578999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCCc
Q 021319          219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      |++.++-..++..|+..|.+++.+|....+||+|.|. ++-|++..|..+..+.. .+-|++++-+.|+-+ ++|++.  
T Consensus       305 Dl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~-~~G~dn--  380 (460)
T KOG0285|consen  305 DLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVL-VSGGDN--  380 (460)
T ss_pred             eeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCceE-EEcCCc--
Confidence            9999999999999999999999999999999999996 89999999998888653 456899999987754 567754  


Q ss_pred             ccccccceEEeccc
Q 021319          298 KYQADEGVFRIYGF  311 (314)
Q Consensus       298 ~~~~~~~~~~~~~~  311 (314)
                            |.+..|+-
T Consensus       381 ------g~~~fwdw  388 (460)
T KOG0285|consen  381 ------GSIMFWDW  388 (460)
T ss_pred             ------eEEEEEec
Confidence                  55666654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.7e-28  Score=184.43  Aligned_cols=255  Identities=22%  Similarity=0.389  Sum_probs=194.4

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC-ceeeEEeecCCCCEEEEEEcCC---CCCEEEEEe-CC
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPK---HADLIATAS-GD   88 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~---~~~~l~s~~-~D   88 (314)
                      +.-..|++.|+|.+|||+|++|+||++|++|++-..+...+. .-..+++..|.+.|..++|..+   ++.+|+|++ .|
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd  162 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD  162 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence            334568999999999999999999999999999766543222 2245678889999999999532   244666654 36


Q ss_pred             CcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319           89 KTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      ..|.+-|...|+-...... .+.++++ ++-++-.+++|+.|.+|++||++-...+......+.                
T Consensus       163 c~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~----------------  225 (350)
T KOG0641|consen  163 CKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH----------------  225 (350)
T ss_pred             ceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCccc----------------
Confidence            7777778877765544433 3444443 555788999999999999999986544333211100                


Q ss_pred             cCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE
Q 021319          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY  247 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  247 (314)
                        ++                -.....+.+++++|.|++|++|-.|....+||++.+..++.|..|...|.++.|||...|
T Consensus       226 --~~----------------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~y  287 (350)
T KOG0641|consen  226 --DG----------------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHY  287 (350)
T ss_pred             --CC----------------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceE
Confidence              00                012456889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCceEEEEECCCCCeEEE------EeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          248 IASASEDLFIDISNVHTGRTVHQ------IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~~~~~~~------~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ++++|.|..|++-|+.. .+.++      -.|+..+-.+.|||..-.+++.+.|+        ++-+|-++
T Consensus       288 llt~syd~~ikltdlqg-dla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk--------t~tlwa~~  349 (350)
T KOG0641|consen  288 LLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK--------TATLWALN  349 (350)
T ss_pred             EEEecccceEEEeeccc-chhhcCceEEEEeccCceEEEEecCccceeeeccCcc--------eEEEeccC
Confidence            99999999999999843 22222      23677788899999988888999997        67777654

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=2.6e-28  Score=214.63  Aligned_cols=231  Identities=18%  Similarity=0.281  Sum_probs=180.0

Q ss_pred             eeeecccccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCC---ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           14 REYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      ..+.||.+.|++++|+| ++++|+||+.|++|++|++......   ......+.+|...|.+++|+|...++|++++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            35789999999999999 8899999999999999999754211   1123467899999999999998767999999999


Q ss_pred             cEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC--cceeeEEeccCCCeEEE
Q 021319           90 TVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  166 (314)
                      +|+|||+.+++....+.. ...+.+++|+|++.+|++++.|+.|++||+++.+.+......  .....+.|.+++..+++
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence            999999998887666543 345678999999999999999999999999998876654322  22345778888777766


Q ss_pred             Ec----CCceEEEEeCCCCC-ceeeeeec-ccceEEEEECCCCCEEEEeeC-CCeEEEeeCCCcEEEEEeee-cccCeEE
Q 021319          167 TT----GNGTVEVLTYPSLR-PLDTVVAH-TAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTK-LEWPVRT  238 (314)
Q Consensus       167 ~~----~~g~~~~~~~~~~~-~~~~~~~~-~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~  238 (314)
                      ++    .++.+++|+..... ++.....+ ...+....|++++++|++++. |+.|++||+.++..+..... ...++..
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g  308 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKG  308 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcc
Confidence            54    47899999987654 33333323 334566778999999998874 99999999998876655432 3446778


Q ss_pred             EEEccC
Q 021319          239 ISFSHT  244 (314)
Q Consensus       239 ~~~sp~  244 (314)
                      ++|.|.
T Consensus       309 ~~~~pk  314 (493)
T PTZ00421        309 LCMMPK  314 (493)
T ss_pred             eEeccc
Confidence            888884

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=8.7e-29  Score=201.57  Aligned_cols=278  Identities=20%  Similarity=0.315  Sum_probs=232.1

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~  100 (314)
                      ..+.++.-.|..+.++|||.|+.+.++|....    ..-..++||...|..+.++|.. ..+++++.|..|++|......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~----q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN----QILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchh----hhhhhccCcceEEEEEEeccch-hheeecCCcceEEeecccccc
Confidence            57888888888889999999999999997652    2334689999999999999974 678899999999999987665


Q ss_pred             eeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc---CcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319          101 CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTTGNGTVEVL  176 (314)
Q Consensus       101 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~  176 (314)
                      ..... .+......+..+|.|.++++++.|++..+.|.++...+.....   .....+.+|||+|..|.++..+|.+++|
T Consensus       295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw  374 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW  374 (506)
T ss_pred             CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence            44333 3445566788999999999999999999999998877654433   3558899999999999999999999999


Q ss_pred             eCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc-cCeEEEEEccCCcEEEEecCCc
Q 021319          177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASEDL  255 (314)
Q Consensus       177 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~s~d~  255 (314)
                      ++.....+..+.+|.++|..++|+-+|-+||+++.|+.|++||+++.+..+++...+ .++.+++|.+.|.+|+.++.|-
T Consensus       375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l  454 (506)
T KOG0289|consen  375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL  454 (506)
T ss_pred             EcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeeccee
Confidence            999888888999999999999999999999999999999999999888777775433 3799999999999999999997


Q ss_pred             eEEEEECCC--CCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          256 FIDISNVHT--GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       256 ~v~v~~~~~--~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      .|++++-.+  ...+..+. +.+..+.|.|.-+..+++++|-|+.        +|||-+
T Consensus       455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~--------l~~~a~  505 (506)
T KOG0289|consen  455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI--------LRLYAL  505 (506)
T ss_pred             EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh--------eEEeec
Confidence            777776432  33444433 4567899999999999999999974        777765

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=6.6e-28  Score=212.12  Aligned_cols=281  Identities=15%  Similarity=0.162  Sum_probs=211.5

Q ss_pred             eeeeeccceeee--cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCC-------CCcee--eEEeecCCCCEEEEEE
Q 021319            6 IPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-------HGKVK--DIELRGHADSVDQLCW   74 (314)
Q Consensus         6 ~~~~~~~~~~~~--gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~-------~~~~~--~~~~~~h~~~v~~l~~   74 (314)
                      ..|+++..+...  .|-..|+....++|+..+++++.+.....|+.....       .++..  ...+.+|.+.|.+++|
T Consensus         4 sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f   83 (493)
T PTZ00421          4 SRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF   83 (493)
T ss_pred             ccccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE
Confidence            346665554432  356678888888898888999988888889753211       00000  1236799999999999


Q ss_pred             cCCCCCEEEEEeCCCcEEEEeCCCCce-------eeeEE-ecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeee
Q 021319           75 DPKHADLIATASGDKTVRLWDARSGKC-------SQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHR  145 (314)
Q Consensus        75 ~~~~~~~l~s~~~D~~v~iwd~~~~~~-------~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~  145 (314)
                      +|.++++|++|+.|++|++||+..+..       ...+. ....+..++|+|++ ++|++++.|+.|++||+++.+.+..
T Consensus        84 sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~  163 (493)
T PTZ00421         84 NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV  163 (493)
T ss_pred             cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE
Confidence            995567999999999999999976531       22222 23445679999985 6899999999999999998877766


Q ss_pred             ec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccc-eEEEEECCCCCEEEEee----CCCeEEEee
Q 021319          146 RK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGRYFAVGS----ADSLVSLWD  219 (314)
Q Consensus       146 ~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~t~~----~dg~i~vwd  219 (314)
                      .. +...+.+++|++++..+++++.|+.+++|+....+.+..+.+|... ...+.|.+++..+++++    .|+.|++||
T Consensus       164 l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD  243 (493)
T PTZ00421        164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD  243 (493)
T ss_pred             EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence            54 4567999999999999999999999999999988888788888764 34677888877776554    478999999


Q ss_pred             CCCcEE-EEEeeec-ccCeEEEEEccCCcEEEEecC-CceEEEEECCCCCeEEEEec--cCccceeEEcCCC
Q 021319          220 ISEMLC-VRTFTKL-EWPVRTISFSHTGDYIASASE-DLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKY  286 (314)
Q Consensus       220 ~~~~~~-~~~~~~~-~~~v~~~~~sp~~~~l~s~s~-d~~v~v~~~~~~~~~~~~~~--~~~i~~v~~~~~~  286 (314)
                      +++... +.....+ ...+....|+|++.+|++++. |+.|++||+.+++.+.....  ..++..++|.|..
T Consensus       244 lr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        244 TRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            986543 3332222 234566679999999999884 99999999999887765433  3468889998854

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6e-29  Score=187.71  Aligned_cols=241  Identities=22%  Similarity=0.349  Sum_probs=200.9

Q ss_pred             eeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe
Q 021319            7 PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (314)
Q Consensus         7 ~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~   86 (314)
                      |.+...+++|.||..+|.+++.+.|...|++||.|+.+.+||++++.    ...++.+|.+.|+.+.|+.. ..+++||+
T Consensus        46 p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk----v~Rr~rgH~aqVNtV~fNee-sSVv~Sgs  120 (307)
T KOG0316|consen   46 PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK----VDRRFRGHLAQVNTVRFNEE-SSVVASGS  120 (307)
T ss_pred             ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe----eeeecccccceeeEEEecCc-ceEEEecc
Confidence            55667889999999999999999999999999999999999998753    23468999999999999965 67999999


Q ss_pred             CCCcEEEEeCCCCceeeeEEe---cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCe
Q 021319           87 GDKTVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (314)
Q Consensus        87 ~D~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      .|.++|+||.++........+   ...+.++..  .+..++.|+.||+++.||+|..+.... ..+.+++++.++++++.
T Consensus       121 fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc  197 (307)
T KOG0316|consen  121 FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNC  197 (307)
T ss_pred             ccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehh-hcCCcceeEEecCCCCE
Confidence            999999999987654332222   233344443  467899999999999999998765443 34568999999999999


Q ss_pred             EEEEcCCceEEEEeCCCCCceeeeeecccceE--EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC-eEEEE
Q 021319          164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY--CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP-VRTIS  240 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~--~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~  240 (314)
                      .++++-++.+++.+-.+.+.+..+.+|...-+  ..++++....+++|+.||.|.+||+.+.+.+..+..+... +.+++
T Consensus       198 ~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~  277 (307)
T KOG0316|consen  198 SLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLS  277 (307)
T ss_pred             EEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeee
Confidence            99999999999999999999999999876544  4467778889999999999999999999988888877766 89999


Q ss_pred             EccCCcEEEEecCCc
Q 021319          241 FSHTGDYIASASEDL  255 (314)
Q Consensus       241 ~sp~~~~l~s~s~d~  255 (314)
                      ++|.-.-|++|..-+
T Consensus       278 ~hp~~~~f~~A~~~~  292 (307)
T KOG0316|consen  278 CHPTMDDFITATGHG  292 (307)
T ss_pred             cccCccceeEecCCc
Confidence            999987777765443

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=2e-27  Score=210.30  Aligned_cols=246  Identities=17%  Similarity=0.212  Sum_probs=188.1

Q ss_pred             eeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce--------eeeEE-ec
Q 021319           38 GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC--------SQQAE-LS  108 (314)
Q Consensus        38 ~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--------~~~~~-~~  108 (314)
                      ||.++.|++|+....    .....+.+|.++|.+++|+|..+++|+||+.|++|++||+.++..        ...+. +.
T Consensus        50 GG~~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~  125 (568)
T PTZ00420         50 GGLIGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK  125 (568)
T ss_pred             CCceeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence            667889999987542    234467899999999999997678999999999999999976421        11122 23


Q ss_pred             CceEEEEEccCCCEE-EEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee
Q 021319          109 GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV  187 (314)
Q Consensus       109 ~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  187 (314)
                      ..+..++|+|++..+ ++++.|+.|++||+++.+.+....+...+.+++|+++|..+++++.++.+++|+.+..+.+..+
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            456679999998764 6889999999999999887766666678999999999999999999999999999988888888


Q ss_pred             eecccceEE-----EEECCCCCEEEEeeCCC----eEEEeeCCC-cEEEEEeeecc--cCeEEEEEccCCcEEEEecCCc
Q 021319          188 VAHTAGCYC-----IAIDPMGRYFAVGSADS----LVSLWDISE-MLCVRTFTKLE--WPVRTISFSHTGDYIASASEDL  255 (314)
Q Consensus       188 ~~~~~~i~~-----i~~~~~~~~l~t~~~dg----~i~vwd~~~-~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~s~d~  255 (314)
                      .+|.+.+.+     ..|++++.++++++.|+    .|++||++. ...+..+....  ..+.-.-..+++.++++|+.|+
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            889876433     34568889999887774    799999985 44454443222  2222233345689999999999


Q ss_pred             eEEEEECCCCCe--EEEEeccCccceeEEcCCCC
Q 021319          256 FIDISNVHTGRT--VHQIPCRAAMNSVEWNPKYN  287 (314)
Q Consensus       256 ~v~v~~~~~~~~--~~~~~~~~~i~~v~~~~~~~  287 (314)
                      .|++|++..+..  +..+.+..+..+++|.|+..
T Consensus       286 tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        286 NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             eEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence            999999977642  22334456789999999654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.7e-30  Score=193.13  Aligned_cols=246  Identities=24%  Similarity=0.388  Sum_probs=186.3

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEE-cCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~~~D~~v~   92 (314)
                      +.-++|++.|++++..--|++|+||+.|++|||+.+....+ .....++.||.++|..++| +|..+++|+|++.||.|.
T Consensus         5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            44578999999999999999999999999999999976543 2345689999999999999 566788999999999999


Q ss_pred             EEeCCCCceeeeEEe---cCceEEEEEccC--CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319           93 LWDARSGKCSQQAEL---SGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        93 iwd~~~~~~~~~~~~---~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      ||...+++..+....   .....+++|.|.  |-.|++++.||.|.+++.+....-                        
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w------------------------  139 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW------------------------  139 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc------------------------
Confidence            999988865444332   334445666664  567888888888888876543000                        


Q ss_pred             cCCceEEEEeCCCCCceeeeeecccceEEEEECCC---C-----------CEEEEeeCCCeEEEeeCCCcE--EEEEeee
Q 021319          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM---G-----------RYFAVGSADSLVSLWDISEML--CVRTFTK  231 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---~-----------~~l~t~~~dg~i~vwd~~~~~--~~~~~~~  231 (314)
                                    ........|+-++++++|.|.   |           +.|++|+.|..|+||+.....  .-+++.+
T Consensus       140 --------------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~  205 (299)
T KOG1332|consen  140 --------------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG  205 (299)
T ss_pred             --------------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh
Confidence                          001112345555555555554   2           569999999999999987652  2345888


Q ss_pred             cccCeEEEEEccCC----cEEEEecCCceEEEEECCC------CCeEEEEeccCccceeEEcCCCCeeEEEecCCcccc
Q 021319          232 LEWPVRTISFSHTG----DYIASASEDLFIDISNVHT------GRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       232 ~~~~v~~~~~sp~~----~~l~s~s~d~~v~v~~~~~------~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~  300 (314)
                      |..-|+.++|.|.-    .++||+|+|+.+.||....      .++++.+  ...+..+.||+.|++||.++.|.+...
T Consensus       206 H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f--~~~~w~vSWS~sGn~LaVs~GdNkvtl  282 (299)
T KOG1332|consen  206 HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF--PDVVWRVSWSLSGNILAVSGGDNKVTL  282 (299)
T ss_pred             cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC--CcceEEEEEeccccEEEEecCCcEEEE
Confidence            99999999999974    6899999999999998653      1233332  357999999999999999998865544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.1e-28  Score=196.27  Aligned_cols=250  Identities=18%  Similarity=0.241  Sum_probs=202.0

Q ss_pred             ccceeeecccccEEEEEECCCC---CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319           11 LHSREYTGHKKKVHSVAWNCTG---TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g---~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~   87 (314)
                      .+++.+.||.++|.+++|--..   ..|+++|.|.++++|..+....-........||.++|.+++..++ +..++|||.
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~  213 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS-GTRFCSGSW  213 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC-CCeEEeecc
Confidence            4667789999999999985433   359999999999999887644322122234599999999999887 468999999


Q ss_pred             CCcEEEEeCCCCc-------------------------eeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe
Q 021319           88 DKTVRLWDARSGK-------------------------CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFK  141 (314)
Q Consensus        88 D~~v~iwd~~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  141 (314)
                      |..++||+..+..                         ....+. +......+.|.+ ...+++++.|.+|+.||+.+.+
T Consensus       214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence            9999999932110                         000111 112334566766 7788999999999999999999


Q ss_pred             EeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC---CceeeeeecccceEEEEECCCCC-EEEEeeCCCeEEE
Q 021319          142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL---RPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSL  217 (314)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~i~~i~~~~~~~-~l~t~~~dg~i~v  217 (314)
                      .+.++..+....++..++..+.+++++.+..+++||-+..   -...++.+|...|.++.|+|... +|++++.|+++++
T Consensus       293 ~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl  372 (423)
T KOG0313|consen  293 LKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL  372 (423)
T ss_pred             ceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence            9888888999999999999999999999999999997543   24567889999999999999765 5889999999999


Q ss_pred             eeCCCcE-EEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319          218 WDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       218 wd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      ||++..+ .+..+.+|...|.++.|+ ++.+++||+.|..++++...
T Consensus       373 WDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  373 WDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            9999877 788889999999999994 57899999999999998643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=1.6e-26  Score=194.42  Aligned_cols=268  Identities=13%  Similarity=0.123  Sum_probs=199.8

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCce
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN  111 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  111 (314)
                      +..++|++.|+.|++||+++..    ....+.++. .+..++|+|++..++++++.|+.|++||..+++...........
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~----~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~   75 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLE----VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP   75 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCc----eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence            3578899999999999986532    222344444 36779999986545577888999999999988776655444445


Q ss_pred             EEEEEccCCCEEEEE-eCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCc-eEEEEeCCCCCceeeeee
Q 021319          112 INITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG-TVEVLTYPSLRPLDTVVA  189 (314)
Q Consensus       112 ~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~  189 (314)
                      ..++++|+++.++++ ..++.+.+||+++.+.+........+..++|+|++..++++..++ .+..|+....+...... 
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-  154 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-  154 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-
Confidence            678899999987665 568899999999887776666555678899999999998887765 45667776554443332 


Q ss_pred             cccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEEEEEeeec-------ccCeEEEEEccCCcEEEEe-cCCceEEEE
Q 021319          190 HTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCVRTFTKL-------EWPVRTISFSHTGDYIASA-SEDLFIDIS  260 (314)
Q Consensus       190 ~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~l~s~-s~d~~v~v~  260 (314)
                      ....+.+++|+|++++++ ++..++.|++||+.+++++..+...       ......++|+|++++++.+ +.+..+.+|
T Consensus       155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~  234 (300)
T TIGR03866       155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV  234 (300)
T ss_pred             cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence            234567899999999875 4456899999999988776655421       1123468899999986544 556789999


Q ss_pred             ECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          261 NVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      |..+++.+..+.....+.+++|+|++..|++++.+       +|+++||+++
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-------~~~i~v~d~~  279 (300)
T TIGR03866       235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV-------SNDVSVIDVA  279 (300)
T ss_pred             ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC-------CCeEEEEECC
Confidence            99998887766666689999999999999877532       3688899875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=2.8e-27  Score=209.32  Aligned_cols=233  Identities=18%  Similarity=0.226  Sum_probs=175.5

Q ss_pred             cceeeecccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCc----eeeEEeecCCCCEEEEEEcCCCCCEEEEEe
Q 021319           12 HSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGK----VKDIELRGHADSVDQLCWDPKHADLIATAS   86 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~   86 (314)
                      ....+.+|.+.|.+++|+|+ +++|+||+.|++|+||++.......    .....+.+|...|.+++|+|.+..++++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            34567899999999999997 7899999999999999986532110    122357899999999999998766778999


Q ss_pred             CCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-Ccce-----eeEEeccC
Q 021319           87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEV-----NEIAWNMT  160 (314)
Q Consensus        87 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~-----~~~~~~~~  160 (314)
                      .|++|++||+++++..........+.+++|+|+|.+|++++.|+.+++||+++.+.+..... ...+     ....++++
T Consensus       146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d  225 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD  225 (568)
T ss_pred             CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence            99999999999988766665556677899999999999999999999999999887765432 2221     22334578


Q ss_pred             CCeEEEEcCC----ceEEEEeCCC-CCceeeeeecc--cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE--EEEeee
Q 021319          161 GEMFFLTTGN----GTVEVLTYPS-LRPLDTVVAHT--AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTK  231 (314)
Q Consensus       161 ~~~~~~~~~~----g~~~~~~~~~-~~~~~~~~~~~--~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~  231 (314)
                      +..+++++.+    +.+++|++.. .+++..+..+.  +.+...-..+++.++++|+.|+.|++|++..+..  +..+. 
T Consensus       226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-  304 (568)
T PTZ00420        226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-  304 (568)
T ss_pred             CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-
Confidence            8888887655    4799999875 45555443322  2233333355688999999999999999976642  22222 


Q ss_pred             cccCeEEEEEccCC
Q 021319          232 LEWPVRTISFSHTG  245 (314)
Q Consensus       232 ~~~~v~~~~~sp~~  245 (314)
                      +..++..++|.|.-
T Consensus       305 s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        305 SCSPFRSFGFLPKQ  318 (568)
T ss_pred             cCCCccceEEcccc
Confidence            45678899999964

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.2e-27  Score=182.39  Aligned_cols=234  Identities=19%  Similarity=0.290  Sum_probs=207.7

Q ss_pred             EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 021319           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVR  138 (314)
Q Consensus        60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (314)
                      +.++||..+++.+.++.+ +++|.|++.|.+..+|-..+|+.+.+... .+.+.++..+.+.+.+++|+.|.++++||.+
T Consensus         4 i~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            357899999999999976 58999999999999999888988777654 4567789999999999999999999999999


Q ss_pred             CCeEeeeeccCcceeeEEeccCCCeEEEEcC-----CceEEEEeCC-------CCCceeeeeecccceEEEEECCCCCEE
Q 021319          139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-----NGTVEVLTYP-------SLRPLDTVVAHTAGCYCIAIDPMGRYF  206 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l  206 (314)
                      +.+.+...+.+.++..+.|+++|+++++..+     .+.+.+++.+       ..+|...+..+...++.+-|+|.++.+
T Consensus        83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            9999999999999999999999999998865     4688888876       345677777788899999999999999


Q ss_pred             EEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319          207 AVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       207 ~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~  285 (314)
                      ++|..||.|..||.++++. ++.-..|...|+.++++|+..+++|+|.|...++||+.+-..++++....+||+++++|.
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~  242 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPL  242 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccc
Confidence            9999999999999999744 555567888999999999999999999999999999999999999999999999999997


Q ss_pred             CCeeEEEec
Q 021319          286 YNLLAYAGD  294 (314)
Q Consensus       286 ~~~la~~~~  294 (314)
                      ...++-+|.
T Consensus       243 ~d~VilgGG  251 (327)
T KOG0643|consen  243 LDHVILGGG  251 (327)
T ss_pred             cceEEecCC
Confidence            766665553

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.7e-28  Score=199.02  Aligned_cols=244  Identities=19%  Similarity=0.309  Sum_probs=203.7

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      +.+...+..|++++|-.||.+|++|+..|.|+|+|+.+    +..-..+.+|..+|....|+|.++..+++|+.|+.+++
T Consensus        62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~  137 (487)
T KOG0310|consen   62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY  137 (487)
T ss_pred             hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence            33556678999999999999999999999999999653    22334578999999999999999999999999999999


Q ss_pred             EeCCCCceeeeEEecC-ceEEEEEccCC-CEEEEEeCCCcEEEEEccCC-eEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319           94 WDARSGKCSQQAELSG-ENINITYKPDG-THIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        94 wd~~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      ||+.+.........+. -+-+.+++|.. ..+++|+.||.|++||.+.. .++..+.++.++..+.+-|.|..++++++ 
T Consensus       138 ~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-  216 (487)
T KOG0310|consen  138 WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-  216 (487)
T ss_pred             EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-
Confidence            9998887532332222 33467788764 47789999999999999987 66777889999999999999888776654 


Q ss_pred             ceEEEEeCCCC-CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEE
Q 021319          171 GTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA  249 (314)
Q Consensus       171 g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  249 (314)
                      ..+++||+..+ +.+.....|...|+|+++..+++.|++|+-|+.|++||+.+.+.+..+ ....||.+++.+|+++.++
T Consensus       217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~v  295 (487)
T KOG0310|consen  217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVV  295 (487)
T ss_pred             CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEE
Confidence            67999999744 444445569999999999999999999999999999999888888776 4678999999999999999


Q ss_pred             EecCCceEEEEECC
Q 021319          250 SASEDLFIDISNVH  263 (314)
Q Consensus       250 s~s~d~~v~v~~~~  263 (314)
                      .|-.||.+.+-...
T Consensus       296 iGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  296 IGMSNGLVSIRRRE  309 (487)
T ss_pred             Eecccceeeeehhh
Confidence            99999998887544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.1e-27  Score=188.07  Aligned_cols=273  Identities=17%  Similarity=0.320  Sum_probs=215.0

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      ..|+.|++-|.+||.|..||.|.|||+.+..    ....+.+|-.+|.+++|++++ ..|+|+|.|..|++||+..|.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR----IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc----hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999998754    233578999999999999985 68889999999999999999999


Q ss_pred             eeEEecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEeeeec-------cCcceeeEEeccCCCeEEEEcCCceEE
Q 021319          103 QQAELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK-------FGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~  174 (314)
                      ++..+.+.+..+.|.|. .+..++.-.+..-.+.++..++  ++..       ......+..|.+.|+++++|...|.+.
T Consensus       101 ~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll  178 (405)
T KOG1273|consen  101 KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL  178 (405)
T ss_pred             eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence            99999999999999884 3444444455555555554422  2211       122234456889999999999999999


Q ss_pred             EEeCCCCCceeeeeecc-cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE---------EEeee--cccCeEEEEEc
Q 021319          175 VLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV---------RTFTK--LEWPVRTISFS  242 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~---------~~~~~--~~~~v~~~~~s  242 (314)
                      +++..+.+.+..+.... ..|..+-++..|+.|++-++|..||.|+++.....         +++..  -+..-.+++||
T Consensus       179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs  258 (405)
T KOG1273|consen  179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS  258 (405)
T ss_pred             EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence            99999988877776555 67899999999999999999999999998642211         11110  12245789999


Q ss_pred             cCCcEEEEecC-CceEEEEECCCCCeEEEEec-c-CccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          243 HTGDYIASASE-DLFIDISNVHTGRTVHQIPC-R-AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       243 p~~~~l~s~s~-d~~v~v~~~~~~~~~~~~~~-~-~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      .+|.|++.++. ...++||....|.+++.+.. + .....|.|+|-.+.+++-         +.|++.||..
T Consensus       259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si---------~sg~v~iw~~  321 (405)
T KOG1273|consen  259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI---------ASGVVYIWAV  321 (405)
T ss_pred             CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec---------cCCceEEEEe
Confidence            99999998864 57899999999999988764 3 357899999988888766         2478889975

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.3e-27  Score=184.63  Aligned_cols=261  Identities=17%  Similarity=0.290  Sum_probs=203.8

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCCCcE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV   91 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D~~v   91 (314)
                      ...+..|.+.|++|+.  ++.+++|||.|-+|+|||+....    +.-.+-.|.+.|+++.|.+.- .+.|+||+.||.|
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~----qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK----QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh----hhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            4456789999999995  68999999999999999997532    223456799999999998753 2378899999999


Q ss_pred             EEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      .+|+...-.+...+.. .+.+..++.+|.+++-++.+.|+.+++||+-+++.-...........+.|+|.|.+|++...+
T Consensus       110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~  189 (362)
T KOG0294|consen  110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN  189 (362)
T ss_pred             EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence            9999887776666544 344557999999999999999999999999888766555555556669999999998887654


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEE--ccCCcEE
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF--SHTGDYI  248 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l  248 (314)
                       .+.+|.+.....+..+ ..+..+.|+.|. ++..|++|..|+.|++||.++..++..+..|+..|.++.+  .|++.||
T Consensus       190 -~i~i~q~d~A~v~~~i-~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l  266 (362)
T KOG0294|consen  190 -KIDIYQLDNASVFREI-ENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL  266 (362)
T ss_pred             -EEEEEecccHhHhhhh-hccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence             5677776554333222 223456677766 4668899999999999999999899999999999999984  4789999


Q ss_pred             EEecCCceEEEEECCCC-----CeEEEEeccCccceeEE
Q 021319          249 ASASEDLFIDISNVHTG-----RTVHQIPCRAAMNSVEW  282 (314)
Q Consensus       249 ~s~s~d~~v~v~~~~~~-----~~~~~~~~~~~i~~v~~  282 (314)
                      +|+|.||.|.|||+...     +++-.+....+++|+.-
T Consensus       267 vTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~  305 (362)
T KOG0294|consen  267 VTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV  305 (362)
T ss_pred             EEeccCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence            99999999999999765     34444444555555543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.6e-27  Score=186.08  Aligned_cols=233  Identities=21%  Similarity=0.313  Sum_probs=193.2

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D~~v~   92 (314)
                      +....|.++|.+++|+.||..+++|+.|+.+++||+.+.     +...+..|.++|..+.|.+.. ...|++||.|++||
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK  140 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK  140 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-----CeeeeeecccceeEEEEecCCCcceeEeccccccee
Confidence            444578999999999999999999999999999999864     233567899999999997643 24889999999999


Q ss_pred             EEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe-eee--ccCcceeeEEeccCCCeEEEEcC
Q 021319           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HRR--KFGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      .||.+....+.++.+.+...++..  ....++++..+..|.++++++.... ++.  ....++++++...+.+.++.++-
T Consensus       141 fWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi  218 (347)
T KOG0647|consen  141 FWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI  218 (347)
T ss_pred             ecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee
Confidence            999998888888877776665543  3457889999999999999765433 222  34578999999999999999999


Q ss_pred             CceEEEEeCCCC--Cceeeeeecc---------cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE
Q 021319          170 NGTVEVLTYPSL--RPLDTVVAHT---------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT  238 (314)
Q Consensus       170 ~g~~~~~~~~~~--~~~~~~~~~~---------~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  238 (314)
                      +|++.+......  +.-.++..|.         +.|++|+|+|.-..|+|++.||++.+||-.....+++.+.+..+|.+
T Consensus       219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc  298 (347)
T KOG0647|consen  219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC  298 (347)
T ss_pred             cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence            999998877654  3334556665         35788999999889999999999999998888888888999999999


Q ss_pred             EEEccCCcEEEEecC
Q 021319          239 ISFSHTGDYIASASE  253 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~  253 (314)
                      .+|+.+|.++|.|..
T Consensus       299 c~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  299 CSFNRNGSIFAYALG  313 (347)
T ss_pred             eEecCCCCEEEEEee
Confidence            999999999998854

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.9e-27  Score=200.88  Aligned_cols=290  Identities=20%  Similarity=0.290  Sum_probs=221.3

Q ss_pred             eeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEE
Q 021319            6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (314)
Q Consensus         6 ~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~   85 (314)
                      -||++.+...|.||++.|.++...|.|..|++|+.||+||||.+.++.+  +....   -...|.+++|+|.....++..
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc--vr~~~---~d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC--VRTVQ---FDSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE--EEEEe---ecceeEEEEecCCCCceeEEE
Confidence            4899999999999999999999999999999999999999999987532  22222   245799999999876555555


Q ss_pred             eCCCcEEEEeCCCCcee--------------------------------------eeEEecCceEEEEEccCCCEEEEEe
Q 021319           86 SGDKTVRLWDARSGKCS--------------------------------------QQAELSGENINITYKPDGTHIAVGN  127 (314)
Q Consensus        86 ~~D~~v~iwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~  127 (314)
                      +.+..+.|-+..-|..+                                      ..+.....+..+.|+..|.+|++..
T Consensus       461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~  540 (733)
T KOG0650|consen  461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM  540 (733)
T ss_pred             EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence            55555666554322100                                      0011112233577999999999876


Q ss_pred             CCC---cEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCC
Q 021319          128 RDD---ELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG  203 (314)
Q Consensus       128 ~d~---~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  203 (314)
                      .++   .+.|.++...+..... +....+..+.|+|...++++++. ..+++|++...+.++.+......+..++++|.|
T Consensus       541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence            543   5888888765544333 44567899999999999888765 578999997766666666666779999999999


Q ss_pred             CEEEEeeCCCeEEEeeCCC-cEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCC-C--------eEEEEec
Q 021319          204 RYFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-R--------TVHQIPC  273 (314)
Q Consensus       204 ~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~-~--------~~~~~~~  273 (314)
                      .-|+.|+.|+.+..+|+.- .+..+++..|...+++++|++.-.++||||.|+.+.|+..+-- .        ++..+..
T Consensus       620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g  699 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG  699 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence            9999999999999999974 3556788889999999999999999999999999999975421 1        1222221


Q ss_pred             -----cCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319          274 -----RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  309 (314)
Q Consensus       274 -----~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~  309 (314)
                           ...|..+.|||..+.|.++|.|        ||+|+|
T Consensus       700 H~~~~~~gVLd~~wHP~qpWLfsAGAd--------~tirlf  732 (733)
T KOG0650|consen  700 HEKTNDLGVLDTIWHPRQPWLFSAGAD--------GTIRLF  732 (733)
T ss_pred             ceeecccceEeecccCCCceEEecCCC--------ceEEee
Confidence                 2247788899999999999988        689988

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1e-27  Score=196.43  Aligned_cols=260  Identities=22%  Similarity=0.397  Sum_probs=190.8

Q ss_pred             ccceeeecccccEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCC------ceeeEEeecCCCCEEEEEEcCCCCCEEE
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHG------KVKDIELRGHADSVDQLCWDPKHADLIA   83 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~~l~   83 (314)
                      +.+...--|.+.|+.+.+.|+... ++|.+..+.|.|||...+..-      ..+.+++.||.+.=+.|+|++.....++
T Consensus       115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll  194 (422)
T KOG0264|consen  115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL  194 (422)
T ss_pred             eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence            334444569999999999999765 666778899999998754321      1234578999998889999998888999


Q ss_pred             EEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC-C
Q 021319           84 TASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-E  162 (314)
Q Consensus        84 s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~  162 (314)
                      +++.|++|.+||+......      ...+.                 -..++          ..+...++.++|++.. .
T Consensus       195 s~~~d~~i~lwdi~~~~~~------~~~~~-----------------p~~~~----------~~h~~~VeDV~~h~~h~~  241 (422)
T KOG0264|consen  195 SGSDDHTICLWDINAESKE------DKVVD-----------------PKTIF----------SGHEDVVEDVAWHPLHED  241 (422)
T ss_pred             eccCCCcEEEEeccccccC------Ccccc-----------------ceEEe----------ecCCcceehhhccccchh
Confidence            9999999999999754321      00000                 00000          0122345666666654 3


Q ss_pred             eEEEEcCCceEEEEeCC--CCCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEE
Q 021319          163 MFFLTTGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRT  238 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~  238 (314)
                      .|.+.++++.+.+||.+  ..++.....+|..+++|++|+|- +..||||+.|++|++||+++. +++.++..|+..|..
T Consensus       242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~  321 (422)
T KOG0264|consen  242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ  321 (422)
T ss_pred             hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEE
Confidence            44455666777777776  45566667789999999999994 567999999999999999875 467889999999999


Q ss_pred             EEEccCC-cEEEEecCCceEEEEECCC-CCe--------------EEEEeccCccceeEEcCCCCe-eEEEecCCccccc
Q 021319          239 ISFSHTG-DYIASASEDLFIDISNVHT-GRT--------------VHQIPCRAAMNSVEWNPKYNL-LAYAGDDKNKYQA  301 (314)
Q Consensus       239 ~~~sp~~-~~l~s~s~d~~v~v~~~~~-~~~--------------~~~~~~~~~i~~v~~~~~~~~-la~~~~d~~~~~~  301 (314)
                      |.|||.. ..|||++.|+.+.|||+.. |+.              +..-.|...|+.+.|+|+.+. +++..+|      
T Consensus       322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD------  395 (422)
T KOG0264|consen  322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED------  395 (422)
T ss_pred             EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC------
Confidence            9999975 6899999999999999864 211              111124568999999998766 4666655      


Q ss_pred             ccceEEeccc
Q 021319          302 DEGVFRIYGF  311 (314)
Q Consensus       302 ~~~~~~~~~~  311 (314)
                        +.++||--
T Consensus       396 --N~LqIW~~  403 (422)
T KOG0264|consen  396 --NILQIWQM  403 (422)
T ss_pred             --ceEEEeec
Confidence              78899965

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.4e-27  Score=192.94  Aligned_cols=277  Identities=15%  Similarity=0.197  Sum_probs=218.0

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC-cee-----------eEEe--ecCCCCEEEEEEcCCC
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVK-----------DIEL--RGHADSVDQLCWDPKH   78 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~-~~~-----------~~~~--~~h~~~v~~l~~~~~~   78 (314)
                      .+.+..|.-.|.+|+++|++++.++++.|++|.=|++.++... .+.           ..+.  ++|...+.+++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4667889999999999999999999999999999998654311 000           0111  3789999999999975


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEE
Q 021319           79 ADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIA  156 (314)
Q Consensus        79 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~  156 (314)
                       .+|++|+.|..|.|||.++...++.+. +.+.+.+++|......+++++.|.++++|++.....+.+. .+...+..+.
T Consensus       215 -kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  215 -KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             -cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence             799999999999999999988766644 3456678999989999999999999999998765444332 2333455555


Q ss_pred             eccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-----
Q 021319          157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-----  231 (314)
Q Consensus       157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-----  231 (314)
                      .......+-++..|+++++|..+... ...+.++.+.+-|++|-. ...|++|+.||.|.+|++.+.+.+.+...     
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~  371 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI  371 (479)
T ss_pred             hhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecccccc
Confidence            55566777788899999999995443 335668888999999974 55889999999999999988776654421     


Q ss_pred             -------cccCeEEEEEccCCcEEEEecCCceEEEEECCCC----CeEEEEeccCccceeEEcCCCCeeEEE
Q 021319          232 -------LEWPVRTISFSHTGDYIASASEDLFIDISNVHTG----RTVHQIPCRAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       232 -------~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~----~~~~~~~~~~~i~~v~~~~~~~~la~~  292 (314)
                             +..-|++++-.|...++||||.+|.|++|-+..+    .++..++..+-||+++|+++++.|++|
T Consensus       372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence                   1125889999999999999999999999999887    345556667889999999999965444

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=5.2e-29  Score=197.93  Aligned_cols=228  Identities=18%  Similarity=0.350  Sum_probs=189.4

Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe
Q 021319           65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI  143 (314)
Q Consensus        65 h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  143 (314)
                      ....|+|+.+..   +.++||..|.+|+|||.++..|...+.. .+..+++.|  +.+.+++|+.|.++.+||..+.+++
T Consensus       196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             cCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence            456799999863   4688999999999999998888776543 445556655  5669999999999999999999988


Q ss_pred             eeecc-CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc---eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319          144 HRRKF-GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (314)
Q Consensus       144 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd  219 (314)
                      ....+ ...+..+.|  ...++++++.|..+.+|++.....   ...+.+|..+++.+.|+  .+++++++.|.+|++|+
T Consensus       271 ~tlihHceaVLhlrf--~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRF--SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS  346 (499)
T ss_pred             hHHhhhcceeEEEEE--eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence            77543 344555554  467889999999999999865442   34467999999999986  56999999999999999


Q ss_pred             CCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcc
Q 021319          220 ISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNK  298 (314)
Q Consensus       220 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~  298 (314)
                      +.+++++.++.+|...|-|+.+  .+++++|||.|..|++||.+.|..++.+. |...|+++.|.  .+.+++|+-|   
T Consensus       347 ~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD---  419 (499)
T KOG0281|consen  347 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD---  419 (499)
T ss_pred             ccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc---
Confidence            9999999999999988887765  68999999999999999999999988875 45679999994  6778899977   


Q ss_pred             cccccceEEeccccC
Q 021319          299 YQADEGVFRIYGFEN  313 (314)
Q Consensus       299 ~~~~~~~~~~~~~~~  313 (314)
                           |++|||+|+.
T Consensus       420 -----GkikvWdl~a  429 (499)
T KOG0281|consen  420 -----GKIKVWDLQA  429 (499)
T ss_pred             -----ceEEEEeccc
Confidence                 7899999974

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.5e-26  Score=181.15  Aligned_cols=268  Identities=19%  Similarity=0.350  Sum_probs=200.6

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEE-cCCCCCEEEEEeCCCcEEEE
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~~~D~~v~iw   94 (314)
                      -.+|.+-|+++.|.+.|.++|||+.|++|+|||.+.........-..+.|.++|..+.| +|.-++.+|+++.|++++||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            36899999999999999999999999999999976555555555678899999999999 56668899999999999999


Q ss_pred             eCCCC-------ceeeeEEe---cCceEEEEEcc--CCCEEEEEeCCCcEEEEEccCCeEe------eeec--------c
Q 021319           95 DARSG-------KCSQQAEL---SGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPI------HRRK--------F  148 (314)
Q Consensus        95 d~~~~-------~~~~~~~~---~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~--------~  148 (314)
                      .....       +.++...+   .+....+.|.|  -|-.|++++.||.++||+....-.+      +.++        .
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            76321       11222222   34455677877  4678899999999999987543222      2222        3


Q ss_pred             CcceeeEEeccC---CCeEEEEcCC-----ceEEEEeCCC----CCceeeeeecccceEEEEECCCC----CEEEEeeCC
Q 021319          149 GYEVNEIAWNMT---GEMFFLTTGN-----GTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDPMG----RYFAVGSAD  212 (314)
Q Consensus       149 ~~~~~~~~~~~~---~~~~~~~~~~-----g~~~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~----~~l~t~~~d  212 (314)
                      ..+..++.|++.   .+.++++..+     +.+.+|....    -..+.++..|..+|+.++|.|+-    .+||+++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            345678899865   3566666654     5777886532    23456677999999999999963    369999999


Q ss_pred             CeEEEeeCCCc--------------------EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCC---CeEE
Q 021319          213 SLVSLWDISEM--------------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG---RTVH  269 (314)
Q Consensus       213 g~i~vwd~~~~--------------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~---~~~~  269 (314)
                      | |+||++...                    +.+..+.+|...|..++|+-.|..|+|.+.||.|++|.....   +...
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~s  327 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTS  327 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeee
Confidence            9 999998631                    234456788889999999999999999999999999976543   3334


Q ss_pred             EEeccCccceeEEcC
Q 021319          270 QIPCRAAMNSVEWNP  284 (314)
Q Consensus       270 ~~~~~~~i~~v~~~~  284 (314)
                      .+...+.+..-.|++
T Consensus       328 v~~~e~~~~~~~~~~  342 (361)
T KOG2445|consen  328 VLKAEGSVTKPDFSQ  342 (361)
T ss_pred             EEeccCCCCCccccc
Confidence            455555666666654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-26  Score=198.16  Aligned_cols=271  Identities=18%  Similarity=0.283  Sum_probs=219.4

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      .+-+.|+. .+.++.|. ...|.+|+..+.   .+..+. .-+.+.|+++.|++++ .+|+.|..+|.|.|||....+..
T Consensus       180 ~nlldWss-~n~laVal-g~~vylW~~~s~---~v~~l~-~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~  252 (484)
T KOG0305|consen  180 LNLLDWSS-ANVLAVAL-GQSVYLWSASSG---SVTELC-SFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKT  252 (484)
T ss_pred             hhHhhccc-CCeEEEEe-cceEEEEecCCC---ceEEeE-ecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhcccc
Confidence            33456773 34455554 468999997653   233222 2237899999999975 68999999999999999877766


Q ss_pred             eeEEe--cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-e-ccCcceeeEEeccCCCeEEEEcCCceEEEEeC
Q 021319          103 QQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-R-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (314)
Q Consensus       103 ~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (314)
                      .....  ...+.+++|.  +..+.+|+.++.|..+|++..+.... . .+..++..++|++++.+++.++.|+.+.+|+.
T Consensus       253 ~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence            66554  3445568887  77899999999999999998776554 3 35678999999999999999999999999999


Q ss_pred             CCCCceeeeeecccceEEEEECC-CCCEEEEee--CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEec--C
Q 021319          179 PSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS--E  253 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~t~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s--~  253 (314)
                      ...++...+..|...|.+++|+| ....||+|+  .|++|++||..++++++.+. ....|..|.|++..+-|+++.  .
T Consensus       331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s  409 (484)
T KOG0305|consen  331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYS  409 (484)
T ss_pred             CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCC
Confidence            88888999999999999999999 456788764  58999999999999887763 345699999999987777664  4


Q ss_pred             CceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          254 DLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       254 d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +..|.||+..+.+++..+. |..+|..++++|++..+++|+.|        +|+|.|.+
T Consensus       410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D--------ETlrfw~~  460 (484)
T KOG0305|consen  410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD--------ETLRFWNL  460 (484)
T ss_pred             CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc--------CcEEeccc
Confidence            5689999999988777764 67789999999999999999988        68999987

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.2e-28  Score=205.49  Aligned_cols=277  Identities=16%  Similarity=0.238  Sum_probs=217.7

Q ss_pred             cccccEE---EEEECCC-CCEEEEeeCCCcEEEeecCCCCCC--ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           18 GHKKKVH---SVAWNCT-GTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        18 gH~~~V~---~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      .|...|.   .++.++. +++|.|||.||+|++|++......  ..-...++.|++-|+++..... ++.|+|+|.|-+|
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTV   97 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTV   97 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceE
Confidence            4666666   6666654 566999999999999998643321  1112356789999998887655 4578899999999


Q ss_pred             EEEeCCCC--ceeeeEEecC-ceEEEEE-ccCCCEEEEEeCCCcEEEEEccCCe--Eeeee----------ccCcceeeE
Q 021319           92 RLWDARSG--KCSQQAELSG-ENINITY-KPDGTHIAVGNRDDELTILDVRKFK--PIHRR----------KFGYEVNEI  155 (314)
Q Consensus        92 ~iwd~~~~--~~~~~~~~~~-~~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~----------~~~~~~~~~  155 (314)
                      ++|+...+  -|...+..+. -+.++++ .++..++|+|+.|+.|.+||+....  .+.+.          -....+.++
T Consensus        98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL  177 (735)
T KOG0308|consen   98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL  177 (735)
T ss_pred             EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence            99998877  3444443333 3456777 6788899999999999999998652  22111          112357888


Q ss_pred             EeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC
Q 021319          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP  235 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~  235 (314)
                      +..+.+..++.|+..+.+++|+....+.+..+.+|...|.++.++.||+.++++++||+|++||+...+|+.++..|+..
T Consensus       178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~  257 (735)
T KOG0308|consen  178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG  257 (735)
T ss_pred             ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence            99999999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEccCCcEEEEecCCceEEEEECCCC-CeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319          236 VRTISFSHTGDYIASASEDLFIDISNVHTG-RTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       236 v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~-~~~~~~~~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      |.++..+|+-..+.+|+.|+.|..-|+.+. +....++...+|..+..+-+.+.+-.+..|
T Consensus       258 VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtd  318 (735)
T KOG0308|consen  258 VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTD  318 (735)
T ss_pred             eEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeecc
Confidence            999999999999999999999999999874 333444445677777777444443444444

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3e-26  Score=180.17  Aligned_cols=241  Identities=23%  Similarity=0.335  Sum_probs=197.9

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeC--CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~--D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      .+.+..++-.|..++|....+.++.++.  |.+||.-++....    -..-+.||...|..++.+|.+ +.++|++.|++
T Consensus        49 ~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk----ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~t  123 (311)
T KOG1446|consen   49 VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK----YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKT  123 (311)
T ss_pred             eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc----eEEEcCCCCceEEEEEecCCC-CeEEecccCCe
Confidence            3444455568999999988888888876  9999999886522    223578999999999999986 78899999999


Q ss_pred             EEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe--Eeeeec----cCcceeeEEeccCCCeE
Q 021319           91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRK----FGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~  164 (314)
                      ||+||++..+|.......+..+ ++|.|+|-++|++...+.|++||+|...  |.....    ...+...+.|+++|+.+
T Consensus       124 vrLWDlR~~~cqg~l~~~~~pi-~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~i  202 (311)
T KOG1446|consen  124 VRLWDLRVKKCQGLLNLSGRPI-AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSI  202 (311)
T ss_pred             EEeeEecCCCCceEEecCCCcc-eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEE
Confidence            9999999888877776655444 7799999999999988899999999763  222222    23567889999999999


Q ss_pred             EEEcCCceEEEEeCCCCCceeeeeecccce---EEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-cccCeEEEE
Q 021319          165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGC---YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTIS  240 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i---~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~  240 (314)
                      +++...+.+++.+...+..+.++..+..+-   ....|+||++++.+|+.||+|++|++++++.+..+.+ +..++.++.
T Consensus       203 LlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~  282 (311)
T KOG1446|consen  203 LLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVR  282 (311)
T ss_pred             EEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccc
Confidence            999999999999998888777776665432   5778999999999999999999999999999988887 578999999


Q ss_pred             EccCCcEEEEecCCceEEEEE
Q 021319          241 FSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       241 ~sp~~~~l~s~s~d~~v~v~~  261 (314)
                      |+|...+++|++..  +..|-
T Consensus       283 fnP~~~mf~sa~s~--l~fw~  301 (311)
T KOG1446|consen  283 FNPRYAMFVSASSN--LVFWL  301 (311)
T ss_pred             cCCceeeeeecCce--EEEEe
Confidence            99999999988776  45553

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=6.5e-27  Score=209.88  Aligned_cols=248  Identities=20%  Similarity=0.300  Sum_probs=199.7

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCC--------------CceeeEEeecCCCCEEEEEEcCCCCCE
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH--------------GKVKDIELRGHADSVDQLCWDPKHADL   81 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~--------------~~~~~~~~~~h~~~v~~l~~~~~~~~~   81 (314)
                      ...|.+.|+|+.|+|||++||+||.|+.|.||+......              .+.....+.+|...|.+++|+|+ ..+
T Consensus        65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~  143 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSL  143 (942)
T ss_pred             eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccE
Confidence            457999999999999999999999999999999873100              12234578899999999999997 479


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCc-------cee
Q 021319           82 IATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-------EVN  153 (314)
Q Consensus        82 l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~  153 (314)
                      ++|+|.|++|.|||.++..+......+ +.+..+.|.|-|+++++-+.|+++++|+.......+.+..++       ...
T Consensus       144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~  223 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL  223 (942)
T ss_pred             EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence            999999999999999988776666543 445569999999999999999999999988776666554322       256


Q ss_pred             eEEeccCCCeEEEEcC----CceEEEEeCCCCCceeeeeecccceEEEEECCC-----CC------------EEEEeeCC
Q 021319          154 EIAWNMTGEMFFLTTG----NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-----GR------------YFAVGSAD  212 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-----~~------------~l~t~~~d  212 (314)
                      -+.|+|+|.++++...    ...+.++.-..-+.-..+.+|..++.++.|+|.     .+            .+|+|++|
T Consensus       224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD  303 (942)
T KOG0973|consen  224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD  303 (942)
T ss_pred             ecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence            6889999999987653    346666666555556678899999999999873     12            68999999


Q ss_pred             CeEEEeeCCCcEEEEEee-ecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          213 SLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       213 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      ++|.||.....+.+.... -....|.+++|+|||.-|+.+|.||.|.+..+..
T Consensus       304 rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  304 RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            999999986665543322 2356799999999999999999999999999875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.2e-26  Score=181.70  Aligned_cols=228  Identities=21%  Similarity=0.366  Sum_probs=186.6

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~   96 (314)
                      ..|..++.+++|.+ ...+++|+.||.||.+|+++...     ..+..|..+|.++...+.. +.+++||+|++|++||.
T Consensus        51 ~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~  123 (323)
T KOG1036|consen   51 FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDP  123 (323)
T ss_pred             eecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccC-CeEEEcccCccEEEEec
Confidence            35899999999986 56799999999999999987432     2466899999999999764 57889999999999999


Q ss_pred             CCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee---eeccCcceeeEEeccCCCeEEEEcCCceE
Q 021319           97 RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---RRKFGYEVNEIAWNMTGEMFFLTTGNGTV  173 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  173 (314)
                      +...+.........+.++  +-.++.|++|+.+..+.+||+|+.....   .....+++++++..|.+.-+++++-+|++
T Consensus       124 R~~~~~~~~d~~kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV  201 (323)
T KOG1036|consen  124 RNKVVVGTFDQGKKVYCM--DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV  201 (323)
T ss_pred             cccccccccccCceEEEE--eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceE
Confidence            975555444444444444  4468899999999999999999865433   33456789999999999999999999999


Q ss_pred             EEEeCCCC----Cceeeeeecc---------cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319          174 EVLTYPSL----RPLDTVVAHT---------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       174 ~~~~~~~~----~~~~~~~~~~---------~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  240 (314)
                      .+=.+...    .....+..|.         .+|++|+|+|--..||||+.||.|.+||+...+.++++.+.+..|.+++
T Consensus       202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls  281 (323)
T KOG1036|consen  202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS  281 (323)
T ss_pred             EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE
Confidence            87655544    2233455554         3589999999988999999999999999999999999988888899999


Q ss_pred             EccCCcEEEEecC
Q 021319          241 FSHTGDYIASASE  253 (314)
Q Consensus       241 ~sp~~~~l~s~s~  253 (314)
                      |+.+|..||.|+.
T Consensus       282 fs~dG~~LAia~s  294 (323)
T KOG1036|consen  282 FSMDGSLLAIASS  294 (323)
T ss_pred             eccCCCeEEEEec
Confidence            9999999999976

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=3.3e-25  Score=186.42  Aligned_cols=264  Identities=14%  Similarity=0.179  Sum_probs=197.0

Q ss_pred             eeeecccccEEEEEECCCCCEE-EEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l-~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      +.+.+|. .+.+++|+|+++.+ ++++.|+.|++||.....   .. ..+..+.. +..++|+|++..++++++.|+.++
T Consensus        25 ~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~-~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~   98 (300)
T TIGR03866        25 RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VI-GTLPSGPD-PELFALHPNGKILYIANEDDNLVT   98 (300)
T ss_pred             EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc---EE-EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEE
Confidence            3444443 46789999999876 667789999999987532   11 12333333 467889998654556667799999


Q ss_pred             EEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-cEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEc-CC
Q 021319           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GN  170 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  170 (314)
                      +||+.+++.............++++|+++.++++..++ .+.+||.++.+.............+.|++++..+++++ .+
T Consensus        99 ~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  178 (300)
T TIGR03866        99 VIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG  178 (300)
T ss_pred             EEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC
Confidence            99999877666555444556789999999999888765 46778988776655544445567789999999886654 58


Q ss_pred             ceEEEEeCCCCCceeeeeecc-------cceEEEEECCCCCEEEE-eeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319          171 GTVEVLTYPSLRPLDTVVAHT-------AGCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS  242 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~t-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  242 (314)
                      +.+.+|+....+.+..+..+.       .....++++|+++++++ .+.++.+.+||+.+++.+..+. +...+.+++|+
T Consensus       179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~  257 (300)
T TIGR03866       179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT  257 (300)
T ss_pred             CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC
Confidence            999999998776554443221       12356889999998544 4556789999998887765543 34578899999


Q ss_pred             cCCcEEEEe-cCCceEEEEECCCCCeEEEEeccCccceeEEcC
Q 021319          243 HTGDYIASA-SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP  284 (314)
Q Consensus       243 p~~~~l~s~-s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~  284 (314)
                      |+|++|+++ +.++.|.+||..+++.+..++.....+.++++|
T Consensus       258 ~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       258 PDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence            999999887 468999999999999999888777889999886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=204.37  Aligned_cols=242  Identities=24%  Similarity=0.384  Sum_probs=207.0

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      +.||.+.|.++++..-+..|++|+.|+++|+||+.++.    ....+.||...|.++...+   .++++|+.|.+|++|+
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~----C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~  317 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE----CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWD  317 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc----EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEe
Confidence            78999999999998778899999999999999987643    3345779999999998754   4788999999999999


Q ss_pred             CCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceE
Q 021319           96 ARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTV  173 (314)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~  173 (314)
                      +.++.+..... ....+.++...  +..+++|+.|++|.+||+.+.+.+.... +...+.++.+... +.++.++.|+.+
T Consensus       318 v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  318 VTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTI  394 (537)
T ss_pred             ccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccce
Confidence            99999988877 45555566665  8899999999999999999998887754 4566777765444 889999999999


Q ss_pred             EEEeCCCC-CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-cccCeEEEEEccCCcEEEEe
Q 021319          174 EVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTISFSHTGDYIASA  251 (314)
Q Consensus       174 ~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~  251 (314)
                      ++|++... +++.++.+|..-+..+.+  .++.|++++.|++|++||..++.++++++. +...|..+++.  ...++++
T Consensus       395 kvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s  470 (537)
T KOG0274|consen  395 KVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCS  470 (537)
T ss_pred             EeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEE
Confidence            99999998 889999999887766555  578999999999999999999999999988 55778888765  6889999


Q ss_pred             cCCceEEEEECCCCCeEEEE
Q 021319          252 SEDLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       252 s~d~~v~v~~~~~~~~~~~~  271 (314)
                      +.|+.+.+||+.+++..+.+
T Consensus       471 ~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  471 SDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ecCCeeEEEecccCchhhhh
Confidence            99999999999999888765

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.5e-27  Score=190.39  Aligned_cols=257  Identities=18%  Similarity=0.305  Sum_probs=206.8

Q ss_pred             Cccceeeeeccc----eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC
Q 021319            2 GESSIPFKNLHS----REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK   77 (314)
Q Consensus         2 ~~~~~~~~~~~~----~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~   77 (314)
                      +|+.+..+++..    +.+..|.+.|+.+++..  ..++|+|.|++|+.|.++..     ....+. ....+..+.-+-.
T Consensus        87 ~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-----p~~til-g~s~~~gIdh~~~  158 (433)
T KOG0268|consen   87 CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-----PLHTIL-GKSVYLGIDHHRK  158 (433)
T ss_pred             cCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-----cceeee-ccccccccccccc
Confidence            355566777644    66789999999999876  78999999999999988642     111222 2344556655433


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeeeEEecCc-eEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeE
Q 021319           78 HADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI  155 (314)
Q Consensus        78 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  155 (314)
                       .+.++|+|.  .|.|||......+..+..... +.++.|+|-- ..|++++.|++|.+||++..+|++........+.+
T Consensus       159 -~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~I  235 (433)
T KOG0268|consen  159 -NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTI  235 (433)
T ss_pred             -cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccce
Confidence             467888874  589999977777777666544 5678899854 56677889999999999999999998888899999


Q ss_pred             EeccCCCeEEEEcCCceEEEEeCCCC-CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe-eecc
Q 021319          156 AWNMTGEMFFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLE  233 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~  233 (314)
                      .|+|.+-.|+++.+|-.++.+|.... +|+....+|..++..++|||.|+-+++|+-|.+|+||..+.++....+ ..-.
T Consensus       236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRM  315 (433)
T KOG0268|consen  236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRM  315 (433)
T ss_pred             ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhh
Confidence            99998889999999999999998654 578888899999999999999999999999999999999887665443 2234


Q ss_pred             cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEE
Q 021319          234 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH  269 (314)
Q Consensus       234 ~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~  269 (314)
                      ..|.++.||.|.+|++|||.|+.|++|.....+.+.
T Consensus       316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             heeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence            579999999999999999999999999876655443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=1.9e-26  Score=197.79  Aligned_cols=297  Identities=20%  Similarity=0.348  Sum_probs=218.2

Q ss_pred             eeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee---cCCCCEEEEEEcCCCCCEEEE
Q 021319            8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPKHADLIAT   84 (314)
Q Consensus         8 ~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s   84 (314)
                      |+-.....+.||.+.|+++.|+|++..|+|++.|+++.+|..+....-++...++.   |....-....|+|++ +.+++
T Consensus       255 ~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~  333 (764)
T KOG1063|consen  255 YRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIA  333 (764)
T ss_pred             EEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEE
Confidence            33333445679999999999999999999999999999998765433233333332   334456788899875 78889


Q ss_pred             EeCCCcEEEEeC-CCCceeeeEEec---CceEEEEEccCCCEEEEEeCCCcEEEEEccCC----eEee-eeccCcceeeE
Q 021319           85 ASGDKTVRLWDA-RSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKF----KPIH-RRKFGYEVNEI  155 (314)
Q Consensus        85 ~~~D~~v~iwd~-~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~-~~~~~~~~~~~  155 (314)
                      -+.-|..++|-. +...+.......   .....+.|.|.|.+|++.+.|.+-+++-.-..    ..+. ...+++...++
T Consensus       334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~  413 (764)
T KOG1063|consen  334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL  413 (764)
T ss_pred             ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence            999999999973 223333333222   33456999999999999999999999865411    1121 23456777777


Q ss_pred             EeccCCCeEEEEcCCceEEEEeCCC--------------------------------CC---------------------
Q 021319          156 AWNMTGEMFFLTTGNGTVEVLTYPS--------------------------------LR---------------------  182 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~--------------------------------~~---------------------  182 (314)
                      ++-+....|+.+.+..-+++|..+.                                .+                     
T Consensus       414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~  493 (764)
T KOG1063|consen  414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL  493 (764)
T ss_pred             ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence            7766555555555544445543220                                00                     


Q ss_pred             -----------------------ceeeeeecccceEEEEECCCCCEEEEeeCCC-----eEEEeeCCCcEEEEEeeeccc
Q 021319          183 -----------------------PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEMLCVRTFTKLEW  234 (314)
Q Consensus       183 -----------------------~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~  234 (314)
                                             .+..+.+|..+|++++.+|+++++|++++..     .|++|+....+.++.+..|..
T Consensus       494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL  573 (764)
T KOG1063|consen  494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL  573 (764)
T ss_pred             ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce
Confidence                                   0223456899999999999999999998765     599999999988889999999


Q ss_pred             CeEEEEEccCCcEEEEecCCceEEEEECCCCCeE-EEE---e-ccCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319          235 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-HQI---P-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  309 (314)
Q Consensus       235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~-~~~---~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~  309 (314)
                      .|..++|||||+||+++|.|..+.+|........ ..+   + |.-=|-+..|+|+.++|||+|+||        ++++|
T Consensus       574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK--------~VkVW  645 (764)
T KOG1063|consen  574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK--------KVKVW  645 (764)
T ss_pred             EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc--------eEEEE
Confidence            9999999999999999999999999998654322 111   2 222377999999999999999998        68899


Q ss_pred             cccC
Q 021319          310 GFEN  313 (314)
Q Consensus       310 ~~~~  313 (314)
                      ..++
T Consensus       646 ~~~~  649 (764)
T KOG1063|consen  646 EEPD  649 (764)
T ss_pred             eccC
Confidence            8865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=1.6e-26  Score=202.01  Aligned_cols=289  Identities=16%  Similarity=0.189  Sum_probs=234.6

Q ss_pred             eeeeecccee-----eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCC
Q 021319            6 IPFKNLHSRE-----YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD   80 (314)
Q Consensus         6 ~~~~~~~~~~-----~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~   80 (314)
                      +-|+++..+.     ...|.+.|....|-|....++|++.|+++++|-.++.......-..-.||+.+..++.|....+.
T Consensus       269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~  348 (910)
T KOG1539|consen  269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH  348 (910)
T ss_pred             EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence            3345544433     45788999999999999999999999999999777544332222233689999999999866678


Q ss_pred             EEEEEeCCCcEEEEeCCCC-------c--------ee-------------------------------------------
Q 021319           81 LIATASGDKTVRLWDARSG-------K--------CS-------------------------------------------  102 (314)
Q Consensus        81 ~l~s~~~D~~v~iwd~~~~-------~--------~~-------------------------------------------  102 (314)
                      .+.+++.|++.+.+++...       +        ..                                           
T Consensus       349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~  428 (910)
T KOG1539|consen  349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN  428 (910)
T ss_pred             EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence            8899999998888865210       0        00                                           


Q ss_pred             --------eeEE------ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee----ccCcceeeEEeccCCCeE
Q 021319          103 --------QQAE------LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIAWNMTGEMF  164 (314)
Q Consensus       103 --------~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  164 (314)
                              ..+.      ......+++.++-|++.+.|+..|.|.+|++.++-...++    .++.++..++....+..+
T Consensus       429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~  508 (910)
T KOG1539|consen  429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL  508 (910)
T ss_pred             ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence                    0000      0012234666777899999999999999999887666555    567789999988888999


Q ss_pred             EEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319          165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  244 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~  244 (314)
                      ++++.+|-+.+|++.....+..+. -...+.++..+.....+|++..|=.|+++|+.+.+.++.|.+|...+++++||||
T Consensus       509 vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D  587 (910)
T KOG1539|consen  509 VSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD  587 (910)
T ss_pred             EEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence            999999999999998777555553 2445788888888889999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319          245 GDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      |++|++++.|+.|++||+.++..+..+....++.++.|||+|.+|||+..|
T Consensus       588 grWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  588 GRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             CcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence            999999999999999999999999998888999999999999999999998

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=197.60  Aligned_cols=269  Identities=18%  Similarity=0.253  Sum_probs=212.8

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCC-CCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH-GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      .+|+..-+.|+|.|+|++|.+|+.||.||+|+.... ..+..    +..+...|.+++-.   .+.|++|+.+++|.+|.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t----i~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET----IDISGELVSSIACY---SNHFLTGSEQNTVLRYK   82 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch----hhccCceeEEEeec---ccceEEeeccceEEEee
Confidence            479999999999999999999999999999987553 21221    11266777777643   35889999999999999


Q ss_pred             CCCCceeee-EEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCCceE
Q 021319           96 ARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTV  173 (314)
Q Consensus        96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~  173 (314)
                      ..++..... ..+.-+...++++.+|++++.|+.|-.|++.++........ ..+..++.++.++|.++++++...+|.+
T Consensus        83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v  162 (933)
T KOG1274|consen   83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKV  162 (933)
T ss_pred             CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceE
Confidence            888765422 23445566788999999999999999999999877654443 5678899999999999999999999999


Q ss_pred             EEEeCCCCCceeeeee-------c-ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee--cccCeEEEEEcc
Q 021319          174 EVLTYPSLRPLDTVVA-------H-TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSH  243 (314)
Q Consensus       174 ~~~~~~~~~~~~~~~~-------~-~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~sp  243 (314)
                      .+|++.......++.+       . ...+..++|+|++..++..+.|+.|++|+...+.....+..  +...+..+.|+|
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP  242 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP  242 (933)
T ss_pred             EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence            9999987655444332       1 23457789999988888899999999999998877666543  334589999999


Q ss_pred             CCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319          244 TGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      .|+|||+++.||.|.|||+.+-.. +.  ....|.+++|.|+.+-+-....-
T Consensus       243 nG~YiAAs~~~g~I~vWnv~t~~~-~~--~~~~Vc~~aw~p~~n~it~~~~~  291 (933)
T KOG1274|consen  243 NGKYIAASTLDGQILVWNVDTHER-HE--FKRAVCCEAWKPNANAITLITAL  291 (933)
T ss_pred             CCcEEeeeccCCcEEEEecccchh-cc--ccceeEEEecCCCCCeeEEEeec
Confidence            999999999999999999988322 22  24579999999998887544433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.3e-26  Score=194.04  Aligned_cols=239  Identities=21%  Similarity=0.334  Sum_probs=198.6

Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeec-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      +...|++|.|+++|.+|+.|-.+|.|.|||.......    ..+.+ |...|.+++|+   ...+.+|+.|+.|..+|++
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~----~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT----RTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc----ccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEe
Confidence            3789999999999999999999999999998764321    23455 99999999997   3578999999999999998


Q ss_pred             CCceeee-EE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeE-EEE--cCCc
Q 021319           98 SGKCSQQ-AE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMF-FLT--TGNG  171 (314)
Q Consensus        98 ~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~--~~~g  171 (314)
                      ..+.... .. +..++..+.|++|++++|+|+.|+.+.|||.....++..+ ++...+..++|+|-..-+ ++|  ..|+
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence            8765443 33 3344556999999999999999999999999777776654 677889999999976544 444  3589


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEE--eeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEE
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA  249 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  249 (314)
                      .+++|+......+..+. -...|..+.|++..+.|++  |..+..|.||+..+.+.+..+.+|...|..+++||||..++
T Consensus       369 ~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~  447 (484)
T KOG0305|consen  369 CIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV  447 (484)
T ss_pred             EEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence            99999998777766553 3567999999998876654  45567899999999999999999999999999999999999


Q ss_pred             EecCCceEEEEECCCC
Q 021319          250 SASEDLFIDISNVHTG  265 (314)
Q Consensus       250 s~s~d~~v~v~~~~~~  265 (314)
                      +|+.|.++++|++-..
T Consensus       448 t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  448 TGAADETLRFWNLFDE  463 (484)
T ss_pred             EecccCcEEeccccCC
Confidence            9999999999998653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.3e-27  Score=180.18  Aligned_cols=212  Identities=25%  Similarity=0.356  Sum_probs=170.7

Q ss_pred             eeeeccceeeecccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEE
Q 021319            7 PFKNLHSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (314)
Q Consensus         7 ~~~~~~~~~~~gH~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~   85 (314)
                      +++-.-++.+..|+.+|.++.|++- ...++++|.|++||+|+...+.    ....+.||..-|....|+|..+++++++
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~  166 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----SVQTFNGHNSCIYQAAFSPHIPNLFASA  166 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc----ceEeecCCccEEEEEecCCCCCCeEEEc
Confidence            3344455667899999999999986 4568888999999999986532    2345889999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCceeeeEEec-CceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCe
Q 021319           86 SGDKTVRLWDARSGKCSQQAELS-GENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (314)
Q Consensus        86 ~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      |.|+++++||++.......++.+ .++.++.|+. +.+.|++|+.|+.|+.||+++.+                      
T Consensus       167 Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----------------------  224 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----------------------  224 (311)
T ss_pred             cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----------------------
Confidence            99999999998865433334433 4777888875 56778899999999999988642                      


Q ss_pred             EEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEE
Q 021319          164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISF  241 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~  241 (314)
                                        .|+..+.+|+..|..++|||-. ..||+++-|-++|+||.... .++.++..|..-+..+.|
T Consensus       225 ------------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw  286 (311)
T KOG0277|consen  225 ------------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW  286 (311)
T ss_pred             ------------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccc
Confidence                              2345567899999999999964 57999999999999998744 445566667777888999


Q ss_pred             cc-CCcEEEEecCCceEEEEEC
Q 021319          242 SH-TGDYIASASEDLFIDISNV  262 (314)
Q Consensus       242 sp-~~~~l~s~s~d~~v~v~~~  262 (314)
                      |+ +..++|+.+.|..++||+.
T Consensus       287 s~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  287 SLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccCceeeecccccceeeecc
Confidence            96 4689999999999999984

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=2.6e-25  Score=181.39  Aligned_cols=244  Identities=20%  Similarity=0.320  Sum_probs=205.6

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ...|.||...|+++.|+|+...+++++.|..||||.+....    .......|..+|+.+..+|.+ ++|++++.|++.-
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~  328 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWA  328 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc----CccccccccccceeeeeccCC-cEEEEecCCceEE
Confidence            35678999999999999999999999999999999876533    223456899999999999984 7999999999999


Q ss_pred             EEeCCCCceeeeEEecC---ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEc
Q 021319           93 LWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTT  168 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  168 (314)
                      +.|++++.+......+.   ...+..|+|||..+.+|..|+.+++||+++...+.++ -+..++..++|+.+|=++++++
T Consensus       329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a  408 (506)
T KOG0289|consen  329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA  408 (506)
T ss_pred             EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence            99999998776655432   2457889999999999999999999999987755443 2457899999999999999999


Q ss_pred             CCceEEEEeCCCCCceeeeee-cccceEEEEECCCCCEEEEeeCCCeEEEeeC--CCcEEEEEeeecccCeEEEEEccCC
Q 021319          169 GNGTVEVLTYPSLRPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDI--SEMLCVRTFTKLEWPVRTISFSHTG  245 (314)
Q Consensus       169 ~~g~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~sp~~  245 (314)
                      +|+.+++||++..+...++.. ...++.++.|++.|++|+.++.|=+|.+++-  ++..++..+..|......+.|....
T Consensus       409 dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a  488 (506)
T KOG0289|consen  409 DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA  488 (506)
T ss_pred             cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence            999999999998887777653 3347999999999999999988866666653  2567777887788788999999999


Q ss_pred             cEEEEecCCceEEEEE
Q 021319          246 DYIASASEDLFIDISN  261 (314)
Q Consensus       246 ~~l~s~s~d~~v~v~~  261 (314)
                      ++++++|.|..++++.
T Consensus       489 q~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  489 QYLASTSMDAILRLYA  504 (506)
T ss_pred             eEEeeccchhheEEee
Confidence            9999999998877764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.95  E-value=2.8e-25  Score=175.15  Aligned_cols=273  Identities=20%  Similarity=0.325  Sum_probs=203.8

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCc----------eeeEEeecCCCCEEEEEEc-------CCCCCEEE
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK----------VKDIELRGHADSVDQLCWD-------PKHADLIA   83 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~----------~~~~~~~~h~~~v~~l~~~-------~~~~~~l~   83 (314)
                      +....+.|||||..|++-+.|..+++|++.......          ...++.. -...|...+|-       |. .++++
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~-t~l~a  127 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPS-TNLFA  127 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCc-cceee
Confidence            345678899999999999999999999985322111          1111111 23456777774       33 56899


Q ss_pred             EEeCCCcEEEEeCCCCceeeeEEe---c---CceEEEEEccCCCEEEEEeCCCcEEEEEccCC-e--Eeee-ecc-----
Q 021319           84 TASGDKTVRLWDARSGKCSQQAEL---S---GENINITYKPDGTHIAVGNRDDELTILDVRKF-K--PIHR-RKF-----  148 (314)
Q Consensus        84 s~~~D~~v~iwd~~~~~~~~~~~~---~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~--~~~~-~~~-----  148 (314)
                      +.+.|.-|++||.-+|+.......   -   ....+++|+|||.+|++|. ...|+++|+..+ +  ++.. ...     
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence            999999999999998876544321   1   1245799999999998885 578999998433 2  1111 111     


Q ss_pred             CcceeeEEeccCCC-eEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC-CCeEEEeeCCCcE-E
Q 021319          149 GYEVNEIAWNMTGE-MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEML-C  225 (314)
Q Consensus       149 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~~~-~  225 (314)
                      ..-+.+++++|... .+++++...++-+|.....+|+..+.+|.++|+.+.|.++|..|.+|++ |..|..||++... .
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            23467889999876 7888888899999999999999999999999999999999999999987 5689999998643 3


Q ss_pred             EEEeeeccc-CeEEE--EEccCCcEEEEecCCceEEEEECCC-CCeEEEEe-ccCccceeEEcCCCCeeEEEecCC
Q 021319          226 VRTFTKLEW-PVRTI--SFSHTGDYIASASEDLFIDISNVHT-GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       226 ~~~~~~~~~-~v~~~--~~sp~~~~l~s~s~d~~v~v~~~~~-~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      +-.+..|.. .-..|  ...|++++||+|+.||.|++||..+ |..+..+. ++..++.|++||-.+++|+++..+
T Consensus       287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence            334444433 22234  4459999999999999999999987 66455443 567899999999999999998654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=6.1e-25  Score=188.61  Aligned_cols=280  Identities=19%  Similarity=0.241  Sum_probs=220.2

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEE-EEEcCCCCCEEEEEeCCCcE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ-LCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~D~~v   91 (314)
                      .+++.||...|..|++.+ +..++++|.||++++|+-...  .......+.+|.+-|.. +++.+.++..+++|+.|.++
T Consensus         7 s~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~--~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGK--QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             EEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCc--ccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            467899999999998764 558999999999999976432  23333456677777776 78876555578999999999


Q ss_pred             EEEeCCCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319           92 RLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      .+|...+......+..+.. +.+++...++. +++|+.|.+.++|-....... ..-|...+..++.-|.+ .+++++.|
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaD  160 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS-LQGHTASVWAVASLPEN-TYVTGSAD  160 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc-cCCcchheeeeeecCCC-cEEeccCc
Confidence            9999987776666544443 34455556666 899999999999976543211 12344567888777776 88999999


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      ..+++|.-  .+.++++.+|..-|..+++-+++ .|++++.||.|+.|++ ++.++.++.+|..-+.+++..+++..++|
T Consensus       161 KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs  236 (745)
T KOG0301|consen  161 KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS  236 (745)
T ss_pred             ceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence            99999986  55677888999999999998754 5788999999999999 78888899999999999999999999999


Q ss_pred             ecCCceEEEEECCCCCeEEEEecc-CccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          251 ASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~~~~-~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +++|+.+++|+..  ...+.+.+- ..|.++.+-++|.. ++|+.|        |.+|||-.++
T Consensus       237 ~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDI-vvg~SD--------G~VrVfT~~k  289 (745)
T KOG0301|consen  237 TGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDI-VVGGSD--------GRVRVFTVDK  289 (745)
T ss_pred             ecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCE-EEeccC--------ceEEEEEecc
Confidence            9999999999976  455555543 47888988887866 578878        6899997754

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.9e-24  Score=160.12  Aligned_cols=242  Identities=22%  Similarity=0.374  Sum_probs=176.8

Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCC----------CCC-ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH----------GHG-KVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~----------~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~   87 (314)
                      -..+|++|+|+|.|.+.+.|++.+++||--...-          .+. .+...+-+.|.+.|+|.+|+|. +++|++|+.
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliatgsn  109 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIATGSN  109 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEecCC
Confidence            4568999999999999999999999999654210          111 1223344578999999999997 479999999


Q ss_pred             CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEe---ccCCCeE
Q 021319           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW---NMTGEMF  164 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  164 (314)
                      |++|++--.+...+...    +..+  .         ....||+|+                    .++|   ...+..+
T Consensus       110 dk~ik~l~fn~dt~~~~----g~dl--e---------~nmhdgtir--------------------dl~fld~~~s~~~i  154 (350)
T KOG0641|consen  110 DKTIKVLPFNADTCNAT----GHDL--E---------FNMHDGTIR--------------------DLAFLDDPESGGAI  154 (350)
T ss_pred             CceEEEEeccccccccc----Ccce--e---------eeecCCcee--------------------eeEEecCCCcCceE
Confidence            99999876654443221    1111  1         111222221                    1111   1112233


Q ss_pred             EEEcC--CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec-------ccC
Q 021319          165 FLTTG--NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-------EWP  235 (314)
Q Consensus       165 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-------~~~  235 (314)
                      +.+.+  +-.+++-+....+++..+.+|.+.|.++- +-+|-++++|+.|.+|++||++-..|+.++...       ...
T Consensus       155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa  233 (350)
T KOG0641|consen  155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA  233 (350)
T ss_pred             EEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence            33333  33455556667778888889999887763 446889999999999999999998888876431       246


Q ss_pred             eEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcCCCCeeEEEecCCc
Q 021319          236 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       236 v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      |.+++..|.|++|++|-.|..+.++|.+.+++++.+ +|...|++|.|+|...++.+++-|-+
T Consensus       234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~  296 (350)
T KOG0641|consen  234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK  296 (350)
T ss_pred             eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce
Confidence            899999999999999999999999999999999886 46778999999999999999998854

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.6e-25  Score=181.85  Aligned_cols=273  Identities=13%  Similarity=0.141  Sum_probs=209.1

Q ss_pred             cccEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           20 KKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      .+.|.+++|||...+ ++..+. -.|.||+..+..    ....+..-.+.|.+++|-.+ +.+++.|...|.|+++|..+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~----~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~   99 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRS----VRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKS   99 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhh----hhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEecccc
Confidence            468999999998754 444432 578899865422    11123344677899999866 57999999999999999766


Q ss_pred             CceeeeEEecCce-EEEEEccCCCE-EEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCC-eEEEEcCCceEE
Q 021319           99 GKCSQQAELSGEN-INITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGE-MFFLTTGNGTVE  174 (314)
Q Consensus        99 ~~~~~~~~~~~~~-~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~g~~~  174 (314)
                      ....+.+..+... -...|+|+++. +++|+.|+.+++||+.+...+..+ .+.--+++.+|+|... .+++|+.||.++
T Consensus       100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr  179 (487)
T KOG0310|consen  100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR  179 (487)
T ss_pred             HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence            4444444433333 45678886655 556777788999999887642222 2233478889988755 778889999999


Q ss_pred             EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecC
Q 021319          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASE  253 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~  253 (314)
                      +|+.+..........|+.+|..+.+-|.|..+|+++.+ .|++||+.++ +.+..+..|.-.|+|+++..++..|+|||-
T Consensus       180 l~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL  258 (487)
T KOG0310|consen  180 LWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL  258 (487)
T ss_pred             EEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence            99998774333334689999999999999999998755 5999999855 444455558889999999999999999999


Q ss_pred             CceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCccc
Q 021319          254 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       254 d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      |+.|+++|+.+.+.++.+...++|.+++.+|++..++.|-.++-..
T Consensus       259 D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  259 DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceee
Confidence            9999999998889999999999999999999999999898886544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=1.5e-25  Score=183.71  Aligned_cols=210  Identities=26%  Similarity=0.455  Sum_probs=168.9

Q ss_pred             eeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCC---ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           15 EYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      .|.||.+.=+.|+|++... .|++|+.|++|.+||+......   ..+...+.+|.+.|..++|++...+++++++.|+.
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence            6789999899999999865 6999999999999999764431   23345688999999999999999999999999999


Q ss_pred             EEEEeCCC--CceeeeEE-ecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEE
Q 021319           91 VRLWDARS--GKCSQQAE-LSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        91 v~iwd~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      +.|||.|+  .+...... ......+++|+|- +..||+|+.|+++.+||+|+.+.                        
T Consensus       252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------------------  307 (422)
T KOG0264|consen  252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------------------  307 (422)
T ss_pred             EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc------------------------
Confidence            99999995  33333333 2455668889984 56678888899999999987431                        


Q ss_pred             EcCCceEEEEeCCCCCceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcE--------------EEEEeee
Q 021319          167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEML--------------CVRTFTK  231 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~--------------~~~~~~~  231 (314)
                                      ++.++.+|...|.++.|+|.. +.||+++.|+.+.+||+.+-.              .+..-.+
T Consensus       308 ----------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG  371 (422)
T KOG0264|consen  308 ----------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG  371 (422)
T ss_pred             ----------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecC
Confidence                            355677899999999999964 689999999999999996421              1233347


Q ss_pred             cccCeEEEEEccCCc-EEEEecCCceEEEEECCC
Q 021319          232 LEWPVRTISFSHTGD-YIASASEDLFIDISNVHT  264 (314)
Q Consensus       232 ~~~~v~~~~~sp~~~-~l~s~s~d~~v~v~~~~~  264 (314)
                      |...|..++|+|... .++|+++|+.+.||.+..
T Consensus       372 H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  372 HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            888999999999876 577889999999998764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-25  Score=193.87  Aligned_cols=277  Identities=17%  Similarity=0.297  Sum_probs=204.8

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecC---CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH---ADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      ....|...++-..|+.+|. ..++|+.+++........+..++.   ...+.++.|+....++|++++..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            4556666788888888874 688899886543222222222111   123567889877788999999999999999976


Q ss_pred             C---ceeeeE-EecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccC-CCeEEEEcCCc
Q 021319           99 G---KCSQQA-ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT-GEMFFLTTGNG  171 (314)
Q Consensus        99 ~---~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~g  171 (314)
                      .   +....+ +++...-++.|++- ..+|++|++|+.|++||+|..+...... ....+++|+|+|. +..|+++.++|
T Consensus       120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG  199 (839)
T KOG0269|consen  120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG  199 (839)
T ss_pred             cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence            2   111112 23344556888764 5678899999999999999877655543 3456899999987 46777888999


Q ss_pred             eEEEEeCCC-CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE--EEEeeecccCeEEEEEccCCcE-
Q 021319          172 TVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDY-  247 (314)
Q Consensus       172 ~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~-  247 (314)
                      .+..||++. .++...+..|.+.+.|+.|+|++.+||||++|+.|+|||+.+.+.  +.++ ....+|.+++|-|..++ 
T Consensus       200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~h  278 (839)
T KOG0269|consen  200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSYH  278 (839)
T ss_pred             eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccch
Confidence            999999964 457778889999999999999999999999999999999975432  2232 23468999999998765 


Q ss_pred             EEEecC--CceEEEEECCCCC-eEEEEe-ccCccceeEEcC-CCCeeEEEecCCcccc
Q 021319          248 IASASE--DLFIDISNVHTGR-TVHQIP-CRAAMNSVEWNP-KYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       248 l~s~s~--d~~v~v~~~~~~~-~~~~~~-~~~~i~~v~~~~-~~~~la~~~~d~~~~~  300 (314)
                      ||+.+.  |..|+|||+...- +...+. |...++.++|-- +-..|.++|.|+..+|
T Consensus       279 LAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  279 LATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             hhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence            666654  7899999997643 334443 567888999975 4567889999988876

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-25  Score=195.83  Aligned_cols=203  Identities=19%  Similarity=0.339  Sum_probs=171.2

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+.|.||.+.|.+|.||. .++|+|+|.|++||+|++...     .++....|++-|+|++|+|.+.++++||+-|+.||
T Consensus       362 ~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~-----~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvR  435 (712)
T KOG0283|consen  362 FCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRK-----ECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVR  435 (712)
T ss_pred             hhhhhccchhheeccccc-CCeeEeccccccEEeecCCCc-----ceeeEEecCCeeEEEEecccCCCcEeecccccceE
Confidence            366889999999999996 569999999999999998753     34566789999999999999999999999999999


Q ss_pred             EEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec---------cCcceeeEEeccCCC-
Q 021319           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---------FGYEVNEIAWNMTGE-  162 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~-  162 (314)
                      ||++...+++.-..++.-+.+++|.|||+..++|+.+|.+.+|+.+..+.+....         ....+..+.+.|... 
T Consensus       436 iWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~  515 (712)
T KOG0283|consen  436 LWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD  515 (712)
T ss_pred             EeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC
Confidence            9999988888877777778899999999999999999999999998776543321         123688888887654 


Q ss_pred             eEEEEcCCceEEEEeCCCCCceeeeeeccc--ceEEEEECCCCCEEEEeeCCCeEEEeeCC
Q 021319          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~t~~~dg~i~vwd~~  221 (314)
                      .+++.+.|..|++|+..+...+..+.++..  .-....|+.||+++++++.|..|.+|++.
T Consensus       516 ~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  516 EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            588999999999999977766666665332  33566899999999999999999999974

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=1.9e-25  Score=175.23  Aligned_cols=243  Identities=19%  Similarity=0.324  Sum_probs=192.1

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC------------c------eeeeE-EecCceEEEEEccCCC
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG------------K------CSQQA-ELSGENINITYKPDGT  121 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~------------~------~~~~~-~~~~~~~~~~~~~~~~  121 (314)
                      .+..|+.++.+.+|+|++ .++++||.|.+|+|.|+..-            .      +++++ ....++..+.|+|...
T Consensus       107 ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            467899999999999985 79999999999999998511            0      11111 1223445688999999


Q ss_pred             EEEEEeCCCcEEEEEccCCeEe---eeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceee---eeecccceE
Q 021319          122 HIAVGNRDDELTILDVRKFKPI---HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT---VVAHTAGCY  195 (314)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~i~  195 (314)
                      .|++++.|++++++|..+....   +.++...++.++.|+|.|++++++.+...+++|+..+.++...   -.+|.+.|+
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~  265 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT  265 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence            9999999999999998765332   2233456789999999999999999999999999887664432   247899999


Q ss_pred             EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-c-ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319          196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-L-EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       196 ~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~-~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~  273 (314)
                      ++..++++++.++|+.||.|++||--.++|+.++.. | ...|.+..|+.+++|++|.++|..+++|++.+++.+..+..
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence            999999999999999999999999999999988864 3 34688999999999999999999999999999999988764


Q ss_pred             cC------ccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          274 RA------AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       274 ~~------~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      .+      .-+...||....++..-.+-       .+.++-|+-
T Consensus       346 Ag~tgrq~~rtqAvFNhtEdyVl~pDEa-------s~slcsWda  382 (430)
T KOG0640|consen  346 AGTTGRQKHRTQAVFNHTEDYVLFPDEA-------SNSLCSWDA  382 (430)
T ss_pred             CCcccchhhhhhhhhcCccceEEccccc-------cCceeeccc
Confidence            32      13456677666665544432       245666653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.2e-25  Score=173.44  Aligned_cols=280  Identities=21%  Similarity=0.315  Sum_probs=220.7

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.|.||++.|..|+-......+.+++.|.+.+||.+++..    .-..+.||.+.|+++.|++. +.++++++.|++.
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~----CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA----CLATYTGHTGSVNSIKFHNS-GLLLLTASGDETA  214 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc----ceeeecccccceeeEEeccc-cceEEEccCCcch
Confidence            457789999999999988777899999999999999998743    33468899999999999987 4799999999999


Q ss_pred             EEEe------CCCCc------------ee--------------------eeEEec---CceEEEEEccCCCEEEEEeCCC
Q 021319           92 RLWD------ARSGK------------CS--------------------QQAELS---GENINITYKPDGTHIAVGNRDD  130 (314)
Q Consensus        92 ~iwd------~~~~~------------~~--------------------~~~~~~---~~~~~~~~~~~~~~l~~~~~d~  130 (314)
                      .||-      +....            +.                    ....+.   ...+++.|...|+.+++++.|.
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR  294 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence            9995      11100            00                    000111   1223455777899999999999


Q ss_pred             cEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC-CceeeeeecccceEEEEECCCCCEEEE
Q 021319          131 ELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAV  208 (314)
Q Consensus       131 ~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~t  208 (314)
                      +-.+||+++..+++.. -+..+...+.-+|...++++++.|-+.++|+++.. ..+..+++|...+++..|+.+. .+++
T Consensus       295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVS  373 (481)
T KOG0300|consen  295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVS  373 (481)
T ss_pred             cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceee
Confidence            9999999999888764 35667788888999999999999999999999643 4567788999999999998754 5788


Q ss_pred             eeCCCeEEEeeCCCcEEE-EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe------ccCccceeE
Q 021319          209 GSADSLVSLWDISEMLCV-RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP------CRAAMNSVE  281 (314)
Q Consensus       209 ~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~------~~~~i~~v~  281 (314)
                      |+.|.+|++||++++... .++ ..+.+++.++.+-.++.+|.--.+..|+++|+...++.+ ++      |+--|.|++
T Consensus       374 gSDDrTvKvWdLrNMRsplATI-RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-lPrtsRqgHrRMV~c~A  451 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNMRSPLATI-RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-LPRTSRQGHRRMVTCCA  451 (481)
T ss_pred             cCCCceEEEeeeccccCcceee-ecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc-CCcccccccceeeeeee
Confidence            999999999999987643 333 456789999999999999999889999999997655432 22      334588999


Q ss_pred             EcCCC--CeeEEEecCCccc
Q 021319          282 WNPKY--NLLAYAGDDKNKY  299 (314)
Q Consensus       282 ~~~~~--~~la~~~~d~~~~  299 (314)
                      |.-+.  +-|.++|=|+..+
T Consensus       452 W~eehp~cnLftcGFDR~v~  471 (481)
T KOG0300|consen  452 WLEEHPACNLFTCGFDRMVA  471 (481)
T ss_pred             ccccCcccccccccccceee
Confidence            98543  4467899887654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=2.4e-25  Score=185.30  Aligned_cols=242  Identities=17%  Similarity=0.244  Sum_probs=190.2

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCce--------eeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV--------KDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ...|++++|++.|..|+..+.....+|+|-+-....+.        --...+||...+++-+|+|...+.+++++.|+++
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl  293 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL  293 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence            45799999999999999999889999998542111000        0113579999999999999999999999999999


Q ss_pred             EEEeCCCCceeeeE-Ee------cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE--eeee----ccCcceeeEEec
Q 021319           92 RLWDARSGKCSQQA-EL------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHRR----KFGYEVNEIAWN  158 (314)
Q Consensus        92 ~iwd~~~~~~~~~~-~~------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~----~~~~~~~~~~~~  158 (314)
                      ||||+.+-+...+. ..      .-....|+|+|+++.+|.|..||+|.+|+.+....  ...+    ..+..+.++.|+
T Consensus       294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS  373 (641)
T KOG0772|consen  294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS  373 (641)
T ss_pred             EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence            99999765432221 11      12345699999999999999999999999755322  1111    123579999999


Q ss_pred             cCCCeEEEEcCCceEEEEeCCCCC-ceeeeeec--ccceEEEEECCCCCEEEEeeC------CCeEEEeeCCCcEEEEEe
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPSLR-PLDTVVAH--TAGCYCIAIDPMGRYFAVGSA------DSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~--~~~i~~i~~~~~~~~l~t~~~------dg~i~vwd~~~~~~~~~~  229 (314)
                      ++|+++++-+.|+.+++|+++..+ ++....+.  ...-+.++|||+.+++++|.+      .|.+.+||..+...+.++
T Consensus       374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki  453 (641)
T KOG0772|consen  374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI  453 (641)
T ss_pred             cccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence            999999999999999999998754 55554432  234678899999999999854      467999999888888887


Q ss_pred             eecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319          230 TKLEWPVRTISFSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~  261 (314)
                      .-....|..+.|+|.=+.|..|+.||.++|+-
T Consensus       454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             cCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            76677899999999988899999999999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=4e-25  Score=183.56  Aligned_cols=287  Identities=16%  Similarity=0.222  Sum_probs=229.6

Q ss_pred             ceeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCcee--eEEeecCCCCEEEEEEcCCCCCEE
Q 021319            5 SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK--DIELRGHADSVDQLCWDPKHADLI   82 (314)
Q Consensus         5 ~~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l   82 (314)
                      +||...-.+.+| .|..-|-.+..|...+++.|||. |.|+|||+...+ .+.+  .+......+.|..+...|++ ..|
T Consensus       405 gIPrharq~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg-~k~PvsqLdcl~rdnyiRSckL~pdg-rtL  480 (705)
T KOG0639|consen  405 GIPRHARQINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG-NKSPVSQLDCLNRDNYIRSCKLLPDG-RTL  480 (705)
T ss_pred             CCCchHHhhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC-CCCccccccccCcccceeeeEecCCC-ceE
Confidence            355544445555 58899999999999999999995 899999996432 2222  22223345678888889886 566


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeEEecCc---eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-CcceeeEEec
Q 021319           83 ATASGDKTVRLWDARSGKCSQQAELSGE---NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWN  158 (314)
Q Consensus        83 ~s~~~D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~  158 (314)
                      ++|+.-.++.|||+.........++...   -.+++.+||.+..+++..||.|.|||+++...+...+. .--..++..+
T Consensus       481 ivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis  560 (705)
T KOG0639|consen  481 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  560 (705)
T ss_pred             EeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence            7899999999999976544333333332   23478899999999999999999999999877776553 3457889999


Q ss_pred             cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT  238 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  238 (314)
                      ++|..+.+++-|++++.||++..+.+... .....|.++...|++.++|+|=.++.+.+-....... ..+..|+..|.+
T Consensus       561 ~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhlheScVLS  638 (705)
T KOG0639|consen  561 KDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHLHESCVLS  638 (705)
T ss_pred             CCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc-eeecccccEEEE
Confidence            99999999999999999999877655432 2356799999999999999999999999988765543 345568899999


Q ss_pred             EEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319          239 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      +.|++.|++++|.+.|..+..|.+..|..+.+.+-..+|.+...+.+.++++||+.||.
T Consensus       639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkk  697 (705)
T KOG0639|consen  639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKK  697 (705)
T ss_pred             EEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcc
Confidence            99999999999999999999999999999888887889999999999999999999963

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=1.2e-25  Score=177.55  Aligned_cols=234  Identities=17%  Similarity=0.292  Sum_probs=201.4

Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE---------EecCceEEEEEccCCCEEEEEeCCCcEEE
Q 021319           64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA---------ELSGENINITYKPDGTHIAVGNRDDELTI  134 (314)
Q Consensus        64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  134 (314)
                      |.+..+.|..|+|++ +++++|+.||.|.+||..+|+..+..         .......++.|++|...+++|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            566778899999985 79999999999999999988754322         23556788999999999999999999999


Q ss_pred             EEccCCeEeeeec--cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC
Q 021319          135 LDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (314)
Q Consensus       135 ~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d  212 (314)
                      |.+++++.+.+..  +...+.++.|+.++..++.++-|.++++--+.+++.++.+.+|..-++...|.++|..+++++.|
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            9999998877654  55679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEeeCCCcEEEEEeee--cccCeEEEEEccCC-cEEEEecCCceEEEEECCCCCeEEEEecc----CccceeEEcCC
Q 021319          213 SLVSLWDISEMLCVRTFTK--LEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQIPCR----AAMNSVEWNPK  285 (314)
Q Consensus       213 g~i~vwd~~~~~~~~~~~~--~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~~~~~~~~~----~~i~~v~~~~~  285 (314)
                      |+|++|+.++..|+.+|+.  .+.+|+++-.-|.+ ..++.+.....+.|-++ .|..++.+..+    +.--+...+|.
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk  448 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK  448 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence            9999999999999998864  46688888887764 57777888888888876 56777777542    33456789999


Q ss_pred             CCeeEEEecCCccc
Q 021319          286 YNLLAYAGDDKNKY  299 (314)
Q Consensus       286 ~~~la~~~~d~~~~  299 (314)
                      |..+...|+|+.+|
T Consensus       449 GewiYcigED~vlY  462 (508)
T KOG0275|consen  449 GEWIYCIGEDGVLY  462 (508)
T ss_pred             CcEEEEEccCcEEE
Confidence            99999999998776

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.8e-23  Score=164.33  Aligned_cols=264  Identities=15%  Similarity=0.294  Sum_probs=201.7

Q ss_pred             EEEEeeCCCcEEEeecCCCCC--C--c----eeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE
Q 021319           34 KLASGSVDQTARVWHIEPHGH--G--K----VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (314)
Q Consensus        34 ~l~s~~~D~~v~iw~~~~~~~--~--~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~  105 (314)
                      .|+.|++...|.=+++.....  .  .    .+-..+..|.+++.+++.+   +.+++|||.|-+|+|||.+.......+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcce
Confidence            367777776665555543220  0  0    1123467899999999985   369999999999999999877655444


Q ss_pred             -EecCceEEEEEccCCC--EEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC
Q 021319          106 -ELSGENINITYKPDGT--HIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL  181 (314)
Q Consensus       106 -~~~~~~~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  181 (314)
                       ...+.+.++.|.+.-.  .|++|+.||.|.+|+......+...+ +..+++.++.+|.++..++.++|+.++.|++-.+
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G  159 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG  159 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence             3345566788887765  89999999999999999998887765 4567999999999999999999999999998766


Q ss_pred             CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319          182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       182 ~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~  261 (314)
                      +.-.... -....+.+.|+|.|.+++....++ |-+|.+...+....+... ..+.++-| -++.+|++|..|..|.+||
T Consensus       160 r~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~-~r~l~~~~-l~~~~L~vG~d~~~i~~~D  235 (362)
T KOG0294|consen  160 RVAFVLN-LKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP-KRILCATF-LDGSELLVGGDNEWISLKD  235 (362)
T ss_pred             ccceeec-cCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc-ccceeeee-cCCceEEEecCCceEEEec
Confidence            5433332 122345589999999999998776 999998876555444333 23555555 4578899999999999999


Q ss_pred             CCCCCeEEEEe-ccCccceeEE--cCCCCeeEEEecCCcccccccceEEecccc
Q 021319          262 VHTGRTVHQIP-CRAAMNSVEW--NPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       262 ~~~~~~~~~~~-~~~~i~~v~~--~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      .....++..+. |..+|-++.+  +|.+.+|+|+|.|        |.||||+++
T Consensus       236 ~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD--------G~I~vWd~~  281 (362)
T KOG0294|consen  236 TDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD--------GFIKVWDID  281 (362)
T ss_pred             cCCCccceeeecchhheeeeEEEecCCceEEEEeccC--------ceEEEEEcc
Confidence            99888887765 5678888874  4678999999999        789999985

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3e-24  Score=176.44  Aligned_cols=244  Identities=22%  Similarity=0.309  Sum_probs=203.8

Q ss_pred             EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee----ee--------E-------EecCceEEEEEccCC
Q 021319           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS----QQ--------A-------ELSGENINITYKPDG  120 (314)
Q Consensus        60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~----~~--------~-------~~~~~~~~~~~~~~~  120 (314)
                      ..+..|..++.+++.+|++ .+.++++.|++|.-|++.+++..    ..        .       ....++++++.++|+
T Consensus       136 ~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             eeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            3466799999999999985 58889999999999998877632    11        0       122346789999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEE
Q 021319          121 THIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI  199 (314)
Q Consensus       121 ~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~  199 (314)
                      ++|++|+.|..+.|||.++.++++.. -+...+.+++|-...+.+++++.|+.+++|+......+.++.+|...|..|+.
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida  294 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA  294 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence            99999999999999999999888774 45567899999999999999999999999999998888899999999999998


Q ss_pred             CCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe--c---c
Q 021319          200 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--C---R  274 (314)
Q Consensus       200 ~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~--~---~  274 (314)
                      ..-++.+-+|+.|.++++|++..-. ...|.++...+.|++|- +...++|||.||.|.+|++.+.+++....  |   .
T Consensus       295 L~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~  372 (479)
T KOG0299|consen  295 LSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP  372 (479)
T ss_pred             hcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccC
Confidence            8888888899999999999995433 23466778789999984 45668899999999999999988886543  2   1


Q ss_pred             C--------ccceeEEcCCCCeeEEEecCCcccccccceEEeccccCC
Q 021319          275 A--------AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA  314 (314)
Q Consensus       275 ~--------~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~~  314 (314)
                      .        .|++|+-.|...++|+|+-+        |.+|+|.++++
T Consensus       373 ~~~~~~~~~Witsla~i~~sdL~asGS~~--------G~vrLW~i~~g  412 (479)
T KOG0299|consen  373 ELDPVNGNFWITSLAVIPGSDLLASGSWS--------GCVRLWKIEDG  412 (479)
T ss_pred             CccccccccceeeeEecccCceEEecCCC--------CceEEEEecCC
Confidence            1        58899999999999999955        78999988754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=4.3e-25  Score=183.35  Aligned_cols=239  Identities=19%  Similarity=0.281  Sum_probs=203.4

Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      ..+.|+++...|||..|++||.-.+|-|||+....  .....++..-.-+.++|+.+|+ .++++++..||.|.|||+++
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT--prikaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhn  540 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHN  540 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCC--cchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEccc
Confidence            45679999999999999999999999999997632  2233455555566788999997 46889999999999999999


Q ss_pred             CceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319           99 GKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (314)
Q Consensus        99 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (314)
                      ...++++..+ ....++.+++||..|.+|+-|.+++.||++..+.+.......++.++.++|+++.++++.+++.+.+..
T Consensus       541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh  620 (705)
T KOG0639|consen  541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLH  620 (705)
T ss_pred             ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEe
Confidence            9888887654 445678999999999999999999999999988877777778899999999999999999999999887


Q ss_pred             CCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceE
Q 021319          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI  257 (314)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v  257 (314)
                      ....+. ..+..|+.-|.++.|.+-|+++++.+.|..+..|.+.-+..+...+ ...+|.++.+|.|.+|++|||.|...
T Consensus       621 ~skp~k-yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkA  698 (705)
T KOG0639|consen  621 TSKPEK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKA  698 (705)
T ss_pred             cCCccc-eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcce
Confidence            654432 3456788889999999999999999999999999998777665543 45689999999999999999999888


Q ss_pred             EEEEC
Q 021319          258 DISNV  262 (314)
Q Consensus       258 ~v~~~  262 (314)
                      .||.+
T Consensus       699 TVYeV  703 (705)
T KOG0639|consen  699 TVYEV  703 (705)
T ss_pred             EEEEE
Confidence            88865

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=1e-22  Score=169.32  Aligned_cols=268  Identities=16%  Similarity=0.213  Sum_probs=197.6

Q ss_pred             ccccEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeecC-CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319           19 HKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~   96 (314)
                      -+..|....|+|.+.. ++++| .+.+..|+.+.....+.+. .++++ +..|.+++|.+++ + +++|..+|.|.||+.
T Consensus       199 sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~-~fek~ekk~Vl~v~F~eng-d-viTgDS~G~i~Iw~~  274 (626)
T KOG2106|consen  199 SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQG-IFEKREKKFVLCVTFLENG-D-VITGDSGGNILIWSK  274 (626)
T ss_pred             ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEee-ccccccceEEEEEEEcCCC-C-EEeecCCceEEEEeC
Confidence            4567888899998755 55555 6899999876543222221 12222 2569999999864 3 569999999999999


Q ss_pred             CCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC---cceeeEEeccCCCeEEEEcCCce
Q 021319           97 RSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEIAWNMTGEMFFLTTGNGT  172 (314)
Q Consensus        97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~  172 (314)
                      ...+..++.. +.+.+.++++..+|.+|- |+.|..|..|| ...+.+...+.+   ..++.++-..  .-++++...+.
T Consensus       275 ~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~--~di~vGTtrN~  350 (626)
T KOG2106|consen  275 GTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK--GDILVGTTRNF  350 (626)
T ss_pred             CCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCC--CcEEEeeccce
Confidence            8777665543 455677899999998776 99999999999 444444444443   3455554322  22667766666


Q ss_pred             EEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEec
Q 021319          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS  252 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s  252 (314)
                      +-.=.+...- .....+|..+...++.+|+...++|++.|+.+++|+-  .+.+-+ +....++.+++|+|.| .+|.|+
T Consensus       351 iL~Gt~~~~f-~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k~~wt-~~~~d~~~~~~fhpsg-~va~Gt  425 (626)
T KOG2106|consen  351 ILQGTLENGF-TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HKLEWT-KIIEDPAECADFHPSG-VVAVGT  425 (626)
T ss_pred             EEEeeecCCc-eEEEEecccceeeEEcCCChhheeeccCcceEEEccC--CceeEE-EEecCceeEeeccCcc-eEEEee
Confidence            5444443322 2245689999999999999999999999999999992  222222 2345789999999999 999999


Q ss_pred             CCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCccc
Q 021319          253 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       253 ~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      ..|...|.|..+...+..-.....++.|+|+|+|.+||.|+.|..+|
T Consensus       426 ~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy  472 (626)
T KOG2106|consen  426 ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY  472 (626)
T ss_pred             ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEE
Confidence            99999999999966665544567899999999999999999998777

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2e-24  Score=176.72  Aligned_cols=237  Identities=22%  Similarity=0.392  Sum_probs=183.3

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEE------------------eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIE------------------LRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~------------------~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      |+++|.|..|..|.|||++.... ..+.+.                  ..+|+++|.+|+|+..-.++|+|||.|.+|++
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~-v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDA-VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             cceEEEeccCceeEEeccccccc-cccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            67999999999999999864321 111111                  23799999999999887889999999999999


Q ss_pred             EeCCCCceeeeEEe-cCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEe-eeeccCcceeeEEeccCC-CeEEEEcC
Q 021319           94 WDARSGKCSQQAEL-SGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTG-EMFFLTTG  169 (314)
Q Consensus        94 wd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~  169 (314)
                      ||+.++++...... ...+.++.|+|. ...|++|+.|+++.+.|.|..... ...+...++..++|.+.. ..++++..
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            99999999888874 455667999885 567789999999999999963322 335666789999998876 45677789


Q ss_pred             CceEEEEeCCCC-CceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcE--EEEEeeecccCeEEEEEccCC
Q 021319          170 NGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEML--CVRTFTKLEWPVRTISFSHTG  245 (314)
Q Consensus       170 ~g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~sp~~  245 (314)
                      +|+++.++.+.. +++.++..|..+|.++++++.- .+++|++.|+.|++|++....  .++.-.---....|.++.|+-
T Consensus       351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~  430 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV  430 (463)
T ss_pred             CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCc
Confidence            999999999765 8999999999999999998754 578999999999999986432  221100001125556677765


Q ss_pred             -cEEEEecCCceEEEEECCCCCeEE
Q 021319          246 -DYIASASEDLFIDISNVHTGRTVH  269 (314)
Q Consensus       246 -~~l~s~s~d~~v~v~~~~~~~~~~  269 (314)
                       -++|.|+..+.++|||+.+...++
T Consensus       431 a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  431 AFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             ceEEEecCccceEEEeecccChhHH
Confidence             457778888899999998876554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.6e-23  Score=174.83  Aligned_cols=286  Identities=17%  Similarity=0.227  Sum_probs=224.8

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      |-+.--.++|.+++|+.+.+.||.+-.||.|.||++..   ++.....+.|+. ..|..++|.+.  ..|.|.+.+|.|.
T Consensus        19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~   93 (691)
T KOG2048|consen   19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSIT   93 (691)
T ss_pred             EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCC---CceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEE
Confidence            33344468999999999999999999999999999875   355555666665 57999999953  5788999999999


Q ss_pred             EEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc---CcceeeEEeccCCCeEEEEc
Q 021319           93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTT  168 (314)
Q Consensus        93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  168 (314)
                      -||+.+++....... .+.+.+++.+|.+..+++|+.||.+..++....+.......   ..++.++.|++++..++.|+
T Consensus        94 EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs  173 (691)
T KOG2048|consen   94 EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS  173 (691)
T ss_pred             EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence            999999887665543 45667899999999999999999888888776665544333   35688999999999999999


Q ss_pred             CCceEEEEeCCCCCceeee----ee----cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319          169 GNGTVEVLTYPSLRPLDTV----VA----HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       169 ~~g~~~~~~~~~~~~~~~~----~~----~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  240 (314)
                      .||.+++|+......+...    .+    ...-++++.+-.++ .+++|++-|+|++||...+..++.+..|+..|.+++
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La  252 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA  252 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence            9999999998776654411    11    11225666665444 689999999999999999999999999999999999


Q ss_pred             EccCCcEEEEecCCceEEEEECCCCCeEEEE-----eccCccceeEEcCCCCeeEEEecCCcccccccceEE
Q 021319          241 FSHTGDYIASASEDLFIDISNVHTGRTVHQI-----PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFR  307 (314)
Q Consensus       241 ~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-----~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~  307 (314)
                      -++++.++++++.|+.+.-+...+++.-...     .|.--|++++..++  .|.+||.|..++..-.++++
T Consensus       253 v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~  322 (691)
T KOG2048|consen  253 VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK  322 (691)
T ss_pred             EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccC
Confidence            9999999999999999988877665431111     13345888888776  88899999888765555543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=2.6e-23  Score=162.29  Aligned_cols=282  Identities=20%  Similarity=0.309  Sum_probs=208.9

Q ss_pred             ecccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCc----ee-------eEEeecCCCCEEEEEEcCCCCCEEEE
Q 021319           17 TGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGK----VK-------DIELRGHADSVDQLCWDPKHADLIAT   84 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~----~~-------~~~~~~h~~~v~~l~~~~~~~~~l~s   84 (314)
                      +-|.+.|++++..+. |.++++|+.||.+.+||++.-..-+    +.       ...-.+|.-+|..+.|-|.+...+.|
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            469999999998874 8899999999999999996432100    00       01224788899999999998889999


Q ss_pred             EeCCCcEEEEeCCCCceeeeEEecCceEEEEEcc---CCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccC
Q 021319           85 ASGDKTVRLWDARSGKCSQQAELSGENINITYKP---DGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT  160 (314)
Q Consensus        85 ~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~  160 (314)
                      +|-|.++++||.++-+....+++++.+.+-+++|   ...++++|..+..+++-|+.....-+... +...+..+.|+|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            9999999999999988877788888777767666   45688999999999999999887666543 4467899999999


Q ss_pred             CCeE-EEEcCCceEEEEeCCCC-Cc--------------eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319          161 GEMF-FLTTGNGTVEVLTYPSL-RP--------------LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (314)
Q Consensus       161 ~~~~-~~~~~~g~~~~~~~~~~-~~--------------~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~  224 (314)
                      .+.+ ++++.||.+++||.+.. -+              ++.-..|.+.++.++|..+++++++++.|..+++|++.++.
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            8865 45678999999997532 11              11233577789999999999999999999999999998764


Q ss_pred             EE-EEeee--c----ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCC
Q 021319          225 CV-RTFTK--L----EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       225 ~~-~~~~~--~----~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      .- +.+..  +    ...+. +. +-+...++---.|+.+.+.++..|..++.+. +...|++.++-|+-..+.++..|.
T Consensus       280 ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~  357 (397)
T KOG4283|consen  280 NTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNG  357 (397)
T ss_pred             ccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCC
Confidence            32 11100  0    01111 22 2233333333344667777777777776654 345688889999888888888888


Q ss_pred             cccc
Q 021319          297 NKYQ  300 (314)
Q Consensus       297 ~~~~  300 (314)
                      +.|-
T Consensus       358 ni~~  361 (397)
T KOG4283|consen  358 NIYM  361 (397)
T ss_pred             cccc
Confidence            8774

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=1.3e-23  Score=180.54  Aligned_cols=293  Identities=19%  Similarity=0.314  Sum_probs=216.4

Q ss_pred             cceeeecccccEEEEEECCCCC---EEEEeeCCCcEEEeecCCCCCCc-----------------e----ee------EE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGK-----------------V----KD------IE   61 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~---~l~s~~~D~~v~iw~~~~~~~~~-----------------~----~~------~~   61 (314)
                      ....+.||.+.|++++|+..+.   +|+|+|.|..||||.+.......                 .    ..      ..
T Consensus       183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal  262 (764)
T KOG1063|consen  183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL  262 (764)
T ss_pred             EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence            4567899999999999997765   79999999999999985432000                 0    00      11


Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC--ceeeeE---EecC---ceEEEEEccCCCEEEEEeCCCcEE
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG--KCSQQA---ELSG---ENINITYKPDGTHIAVGNRDDELT  133 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~--~~~~~~---~~~~---~~~~~~~~~~~~~l~~~~~d~~i~  133 (314)
                      +.||.+-|.++.|+|.+ ..|+|+|.|+++.+|-....  -.+...   ...+   ......|+|+++.+++-+..|..+
T Consensus       263 l~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            34999999999999985 46779999999999976543  332222   2221   234678999999999999999999


Q ss_pred             EEEccCC---eEee-eeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC----ceeeeeecccceEEEEECCCCCE
Q 021319          134 ILDVRKF---KPIH-RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR----PLDTVVAHTAGCYCIAIDPMGRY  205 (314)
Q Consensus       134 i~d~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~  205 (314)
                      +|-.+..   .+.. ..-+...+.+++|+|.|+++++.+.|.+-+++-....+    .+...+.|++.++|+++-+....
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence            9983221   1111 11234578999999999999999999999988654222    12233468999999999987778


Q ss_pred             EEEeeCCCeEEEeeCCC-------------------------------------------cE----EE------------
Q 021319          206 FAVGSADSLVSLWDISE-------------------------------------------ML----CV------------  226 (314)
Q Consensus       206 l~t~~~dg~i~vwd~~~-------------------------------------------~~----~~------------  226 (314)
                      +++|..+..+|+|+..+                                           +.    +.            
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence            89999999999996321                                           00    00            


Q ss_pred             -----------------EEeeecccCeEEEEEccCCcEEEEecCC-----ceEEEEECCCCCeEEEEe-ccCccceeEEc
Q 021319          227 -----------------RTFTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRTVHQIP-CRAAMNSVEWN  283 (314)
Q Consensus       227 -----------------~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~  283 (314)
                                       +++-+|...|.+++.+|+++++||+-..     ..|++|+..+....+.+. |.-+|+.++||
T Consensus       502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS  581 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS  581 (764)
T ss_pred             CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence                             0112455678999999999999998653     568999999877777654 56689999999


Q ss_pred             CCCCeeEEEecCCcccccccceEEeccccC
Q 021319          284 PKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       284 ~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ||+++|++.|+|+        ++.+|..++
T Consensus       582 pdg~~LLsvsRDR--------t~sl~~~~~  603 (764)
T KOG1063|consen  582 PDGRYLLSVSRDR--------TVSLYEVQE  603 (764)
T ss_pred             CCCcEEEEeecCc--------eEEeeeeec
Confidence            9999999999998        566776543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=2.8e-22  Score=166.71  Aligned_cols=270  Identities=18%  Similarity=0.242  Sum_probs=201.2

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      ++.|.|++|.++|+ ++||.++|.|.||+...   ..+.... ..|.+.|.+|+...++  .|+||+.|..|..|| .+.
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~---~~~~k~~-~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd-~~y  317 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGT---NRISKQV-HAHDGGVFSLCMLRDG--TLLSGGKDRKIILWD-DNY  317 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCC---ceEEeEe-eecCCceEEEEEecCc--cEeecCccceEEecc-ccc
Confidence            46899999999886 78999999999998743   2333333 4899999999997653  466899999999999 333


Q ss_pred             ceeeeEEec---CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319          100 KCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL  176 (314)
Q Consensus       100 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  176 (314)
                      +..+..++.   +.+..++  +.+.-+++|...+.|..=.+.+.-.+...-++.+...++.+|..+++++++.++.+++|
T Consensus       318 ~k~r~~elPe~~G~iRtv~--e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW  395 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVA--EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLW  395 (626)
T ss_pred             cccccccCchhcCCeeEEe--cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEc
Confidence            333333332   2222232  33333777877777666666665555555556678889999999999999999999999


Q ss_pred             eCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCce
Q 021319          177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF  256 (314)
Q Consensus       177 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~  256 (314)
                      +  ..++..+. ....++.|++|+|.| .+|.|...|...+.|.++...+. +.....++++++|+|+|.+||.||.|+.
T Consensus       396 ~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~  470 (626)
T KOG2106|consen  396 N--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNH  470 (626)
T ss_pred             c--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEecCCceEEEEEcCCCCEEEEecCCCe
Confidence            9  33333322 245678999999999 99999999999999998854443 3334779999999999999999999999


Q ss_pred             EEEEECCC-CCeEEEE-e-ccCccceeEEcCCCCeeEEEecCCcccccccc
Q 021319          257 IDISNVHT-GRTVHQI-P-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG  304 (314)
Q Consensus       257 v~v~~~~~-~~~~~~~-~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~  304 (314)
                      |.+|-+.. |+++... . +..+|+.+.|++|+++|.+-+.|-.+.-|..+
T Consensus       471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            99999875 4444332 1 24689999999999999999888665544333

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=4.3e-24  Score=181.90  Aligned_cols=256  Identities=21%  Similarity=0.290  Sum_probs=178.6

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      ....|.++|.++.|.|-..+|++++.|.++|+||++.......  ..+.||...|.++||+|.+..++++|+.||.|.||
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~--~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG--RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc--eeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            3458999999999999666899999999999999976432111  13679999999999999999999999999999999


Q ss_pred             eCCCCcee-------ee---EE-----------------e-cCce---EEEEEccCCCEEEEEeC-CCcEEEEEccCCeE
Q 021319           95 DARSGKCS-------QQ---AE-----------------L-SGEN---INITYKPDGTHIAVGNR-DDELTILDVRKFKP  142 (314)
Q Consensus        95 d~~~~~~~-------~~---~~-----------------~-~~~~---~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~  142 (314)
                      |.+-....       ..   .+                 . ...+   +.+-+..|...|++++. |+.|++||+++...
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            98633210       00   00                 0 0011   22445567777887666 88899999887644


Q ss_pred             eeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeec---ccceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319          143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH---TAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (314)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~t~~~dg~i~vwd  219 (314)
                      ..+.+..                                 ....+.-|   ..++.++..+..|.+|.+.+.|+.|..|+
T Consensus       253 ~~r~ep~---------------------------------~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn  299 (720)
T KOG0321|consen  253 AYRQEPR---------------------------------GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN  299 (720)
T ss_pred             ccccCCC---------------------------------cccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence            3221110                                 01111112   34578888998999988888899999999


Q ss_pred             CCCcEE--EEEeeeccc--CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE--EeccCccceeEEcCCC-CeeEEE
Q 021319          220 ISEMLC--VRTFTKLEW--PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKY-NLLAYA  292 (314)
Q Consensus       220 ~~~~~~--~~~~~~~~~--~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~--~~~~~~i~~v~~~~~~-~~la~~  292 (314)
                      +.....  +..+.++..  --..-..+|++.+|++|+.|....+|.+.+...--.  ..|.-+|++|+|.|.. .-+|++
T Consensus       300 m~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc  379 (720)
T KOG0321|consen  300 MRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATC  379 (720)
T ss_pred             ccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceee
Confidence            976422  223332211  112234789999999999999999999987554322  2344579999999964 456778


Q ss_pred             ecCCcccccccceEEeccccC
Q 021319          293 GDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       293 ~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ++|        -.++||.+++
T Consensus       380 SdD--------~~~kiW~l~~  392 (720)
T KOG0321|consen  380 SDD--------FRVKIWRLSN  392 (720)
T ss_pred             ccC--------cceEEEeccC
Confidence            877        4899999854

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=3.7e-23  Score=169.95  Aligned_cols=281  Identities=17%  Similarity=0.222  Sum_probs=208.8

Q ss_pred             eeeecccccEEEEEECCCCC--EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           14 REYTGHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~--~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      .++.-|..+|++++|+|..+  .+++|+.-|.|-+||+..++...-..+.+..|+.+|.++.|+|.+...+++.|.||+|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            44556788999999999864  6888889999999999643333334456778999999999999998899999999999


Q ss_pred             EEEeCCCCceeeeEEec--Cc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeE-eee-eccCcceeeEEeccCCC-eEE
Q 021319           92 RLWDARSGKCSQQAELS--GE-NINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHR-RKFGYEVNEIAWNMTGE-MFF  165 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~-~~~  165 (314)
                      |+=|+.+..........  .. ...+.|+.+...++.+..-|.+.+||++.... ... ..+...+..++++|... +++
T Consensus       260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la  339 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA  339 (498)
T ss_pred             eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence            99999876533322221  11 12355677777777777777999999987654 222 23445788999999765 566


Q ss_pred             EEcCCceEEEEeCCCCCce----eeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC----CcEEEEEeeeccc---
Q 021319          166 LTTGNGTVEVLTYPSLRPL----DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS----EMLCVRTFTKLEW---  234 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~----~~~~~~~~~~~~~---  234 (314)
                      +++.|++.++||++..+..    -....|...|.+..|||++-.|+|.+.|..|+|||..    ....+.++ .|..   
T Consensus       340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~  418 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTG  418 (498)
T ss_pred             ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCccc
Confidence            7788999999999765433    3345789999999999988779999999999999984    21111122 1211   


Q ss_pred             ---CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe--ccCcccee-EEcCCCCeeEEEecC
Q 021319          235 ---PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSV-EWNPKYNLLAYAGDD  295 (314)
Q Consensus       235 ---~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~--~~~~i~~v-~~~~~~~~la~~~~d  295 (314)
                         ......|.|+..+++.|-.-..|.|+|...++.+.++.  ...+|.+| +|||.+..+|+||..
T Consensus       419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s  485 (498)
T KOG4328|consen  419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS  485 (498)
T ss_pred             ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence               23446799999999999998889999998888777653  23467766 999988867766654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.7e-24  Score=174.64  Aligned_cols=226  Identities=19%  Similarity=0.298  Sum_probs=182.8

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      .++|.+++-+|+|.+|+.|.-.+.+.+|.+.++.   ... .+.+|-.+|+++.|+.+ +.+|+|||.||.|.+|++..-
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~---LL~-v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI---LLN-VLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEecccc---HHH-HHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEee
Confidence            5789999999999999999999999999998743   222 45789999999999976 579999999999999986321


Q ss_pred             -------ceeeeEEecCce---EE--EEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319          100 -------KCSQQAELSGEN---IN--ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus       100 -------~~~~~~~~~~~~---~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                             .......+..+.   ..  +.+.+-...|++++.|.++++||+.....+.++..+..+.+++..|....+++|
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG  235 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG  235 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec
Confidence                   111112222222   22  333444578999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEEEeCCCCC----------------ceeeeeeccc--ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          168 TGNGTVEVLTYPSLR----------------PLDTVVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~----------------~~~~~~~~~~--~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                      +.+|.+.+..+....                .+..+.+|.+  +|+|++++.||+.|++|+.||.|+|||+.+.+|++++
T Consensus       236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence            999999888754321                2334567887  8999999999999999999999999999999999888


Q ss_pred             eecccCeEEEEEccCCcEEEE
Q 021319          230 TKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      .....+|+.+.+.|-.+-...
T Consensus       316 ~~~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  316 QTSKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             hhhccccceeEeeccccceec
Confidence            767789999999776544443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=8e-23  Score=179.02  Aligned_cols=281  Identities=20%  Similarity=0.339  Sum_probs=213.3

Q ss_pred             cc-cccEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           18 GH-KKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        18 gH-~~~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      .| .+.|+++.|..||+. +++|+..|.+-+||++..   +........|.+.|..+.+-|. ..++++++.|.++++|-
T Consensus       241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k---kl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~v  316 (910)
T KOG1539|consen  241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK---KLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWV  316 (910)
T ss_pred             EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC---eeeeeeeccccCCcccceecCC-CceEeeccCCCceeEEE
Confidence            35 489999999999975 666777899999999863   3334445579899999999886 46899999999999984


Q ss_pred             CCCCc----eeeeE-EecCceEEEEEc-cCCCEEEEEeCCCc--------------------------------------
Q 021319           96 ARSGK----CSQQA-ELSGENINITYK-PDGTHIAVGNRDDE--------------------------------------  131 (314)
Q Consensus        96 ~~~~~----~~~~~-~~~~~~~~~~~~-~~~~~l~~~~~d~~--------------------------------------  131 (314)
                      .+++.    ..+.. .+..++.++.|. .+|..+.+++.|++                                      
T Consensus       317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p  396 (910)
T KOG1539|consen  317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP  396 (910)
T ss_pred             eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence            44322    11111 112223334433 34444444444444                                      


Q ss_pred             ---------------------------EEEEEccCCeE-eeeec------cCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319          132 ---------------------------LTILDVRKFKP-IHRRK------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (314)
Q Consensus       132 ---------------------------i~i~d~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (314)
                                                 ...|++++... .+..+      ....+.++..+++|+..+.|...|.|.+|+
T Consensus       397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN  476 (910)
T KOG1539|consen  397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN  476 (910)
T ss_pred             cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence                                       44444443322 11111      123467788899999999999999999999


Q ss_pred             CCCCCceeee---eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC
Q 021319          178 YPSLRPLDTV---VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED  254 (314)
Q Consensus       178 ~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d  254 (314)
                      ++++.....+   ..|..+|+.++.+..++.+++++.+|.+++||..+...+..+ ....++..+..+.....+|.+-.|
T Consensus       477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l-~l~~~~~~iv~hr~s~l~a~~~dd  555 (910)
T KOG1539|consen  477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL-RLGSSITGIVYHRVSDLLAIALDD  555 (910)
T ss_pred             cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee-ccCCCcceeeeeehhhhhhhhcCc
Confidence            9887666666   589999999999999999999999999999999877655554 345578888899999999999999


Q ss_pred             ceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          255 LFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       255 ~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      -.|.++|+.+.+.++++. |.+.|+++.|||+|+.|++++-|        +++|+||+
T Consensus       556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD--------~tIr~wDl  605 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD--------STIRTWDL  605 (910)
T ss_pred             eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC--------CcEEEEec
Confidence            999999999999999987 78899999999999999999988        58999987

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=5.6e-25  Score=189.66  Aligned_cols=250  Identities=18%  Similarity=0.276  Sum_probs=208.5

Q ss_pred             EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceE
Q 021319           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENI  112 (314)
Q Consensus        34 ~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~  112 (314)
                      ++++...+-.+++|+..          +...|+..|.++..- .....+++|+.|..+.+|.+..-.++..+.. ...+-
T Consensus         6 ~~m~~~~~t~Lr~~~~~----------~~~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe   74 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTR----------EFVAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE   74 (825)
T ss_pred             ccceeeeeeccccccch----------hhhhhhhhhceeeee-ccceeeccCCCceeeccccccCCchhheeeccCCcce
Confidence            34455556667788753          345788888888763 3356889999999999999876665555443 44566


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecc
Q 021319          113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT  191 (314)
Q Consensus       113 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  191 (314)
                      ++.|+++..+|+.|..+|+|++||+...+.+++.. +-..+..+.|+|-+.+++.++.+..+.+|+.+...+...+.+|.
T Consensus        75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~  154 (825)
T KOG0267|consen   75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT  154 (825)
T ss_pred             eeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence            89999999999999999999999999877666543 23457788899999999999999999999998888888888999


Q ss_pred             cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE
Q 021319          192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       192 ~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~  271 (314)
                      ..+.++.|+|+|++++.|+.|..+++||...++.+.+|+.|+..+.++.|+|..-.+++||.|..+++||+++-..+-..
T Consensus       155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~  234 (825)
T KOG0267|consen  155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG  234 (825)
T ss_pred             ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876666543


Q ss_pred             e-ccCccceeEEcCCCCeeEEEec
Q 021319          272 P-CRAAMNSVEWNPKYNLLAYAGD  294 (314)
Q Consensus       272 ~-~~~~i~~v~~~~~~~~la~~~~  294 (314)
                      . .-..|.+++|+|++..+++|-.
T Consensus       235 ~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  235 KPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             CCccCCceeeeecCCceeeecCch
Confidence            3 2457999999999988765543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.6e-22  Score=174.61  Aligned_cols=277  Identities=18%  Similarity=0.266  Sum_probs=201.9

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC----------CCEEEEEeCCCcE
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH----------ADLIATASGDKTV   91 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----------~~~l~s~~~D~~v   91 (314)
                      ..-.+.|++..+.|.+.-.|.++.|||+..-.. .......-.|+.-|..+.--|-+          ...+++++.|++|
T Consensus       326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~k-vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI  404 (1080)
T KOG1408|consen  326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK-VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI  404 (1080)
T ss_pred             ceeEEEecCCCceEEEEEcCceEEEEecccccc-ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence            345678999999999999999999999964221 11222233466655554333210          2358899999999


Q ss_pred             EEEeCCCCc---eeeeE-----------------------------------EecCceEEEEEccCCCEEEEEeCCCcEE
Q 021319           92 RLWDARSGK---CSQQA-----------------------------------ELSGENINITYKPDGTHIAVGNRDDELT  133 (314)
Q Consensus        92 ~iwd~~~~~---~~~~~-----------------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~  133 (314)
                      |+||+..+.   ..+..                                   .......+++.+|+|++|++|..-|.++
T Consensus       405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr  484 (1080)
T KOG1408|consen  405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR  484 (1080)
T ss_pred             EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence            999986521   10000                                   0011234688999999999999999999


Q ss_pred             EEEccCCeEeeeec-cCcceeeEEeccC---CCeEEEEcCCceEEEEeCCC-CCceeeeeecc-----------------
Q 021319          134 ILDVRKFKPIHRRK-FGYEVNEIAWNMT---GEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHT-----------------  191 (314)
Q Consensus       134 i~d~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~-----------------  191 (314)
                      ++++.........+ +..++.++.++..   .++++.++.+.-|++||... ..++.++.+|.                 
T Consensus       485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M  564 (1080)
T KOG1408|consen  485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM  564 (1080)
T ss_pred             EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence            99998766554443 4567777777654   24566666777777776432 11112222221                 


Q ss_pred             --------------------------------cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee---cccCe
Q 021319          192 --------------------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---LEWPV  236 (314)
Q Consensus       192 --------------------------------~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---~~~~v  236 (314)
                                                      ..++.+++.|+.+++++++.|..|+|||+..++..+.|++   ++...
T Consensus       565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l  644 (1080)
T KOG1408|consen  565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL  644 (1080)
T ss_pred             EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence                                            2356778889999999999999999999999999999976   45667


Q ss_pred             EEEEEccCCcEEEEecCCceEEEEECCCCCeEEE-EeccCccceeEEcCCCCeeEEEecCCccc
Q 021319          237 RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       237 ~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      -.+...|.|-|||+.-.|..+-++|..+|+.+.+ +.|...|+.+.|.+|-+-|++.+.|+=+|
T Consensus       645 IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF  708 (1080)
T KOG1408|consen  645 IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF  708 (1080)
T ss_pred             EEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence            7889999999999999999999999999998866 45677899999999999999999996555

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=9e-24  Score=180.33  Aligned_cols=249  Identities=20%  Similarity=0.287  Sum_probs=201.7

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ++..+..|.+.|+++....+|+.|+|||.|-+|++|+...+..  ...-.+..|.+.|.|+++...+..++||||-|+.|
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~--~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~I  142 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT--FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKI  142 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--hhHhhhhcccchheeeeecccCceeEEecCCCccE
Confidence            4566778999999999999999999999999999999876431  12224678999999999944556899999999999


Q ss_pred             EEEeCCCCce--eeeEE----------ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEec
Q 021319           92 RLWDARSGKC--SQQAE----------LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWN  158 (314)
Q Consensus        92 ~iwd~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~  158 (314)
                      .+||+.++..  ....+          ....+.+++.++.|..++.|+..+.+++||.++.+.+.+.. +...+..+..+
T Consensus       143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~  222 (735)
T KOG0308|consen  143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN  222 (735)
T ss_pred             EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEc
Confidence            9999998732  21111          12335578899999999999999999999999987776654 44568889999


Q ss_pred             cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT  238 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  238 (314)
                      .+|..+++++.||+|++|++...+++.++..|...++++..+|+-+.+.+|++||.|..=|+++......+-..+.||..
T Consensus       223 dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~  302 (735)
T KOG0308|consen  223 DDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLK  302 (735)
T ss_pred             CCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999885443334345667777


Q ss_pred             EEEccCCcEEEEecCCceEEEEEC
Q 021319          239 ISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      +..+....-+=+++.|+.|.-|..
T Consensus       303 l~~~~~~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  303 LHLHEHDNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             hhhccccCCceeeeccccceecCC
Confidence            777644444456777777877754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=2.9e-23  Score=166.86  Aligned_cols=204  Identities=25%  Similarity=0.439  Sum_probs=157.1

Q ss_pred             eeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .++.+|...=+.|+|||-.. .|+||..-+.|++|...++.. .+-...+.+|+.+|..|+|+|....+|+|||.|++|+
T Consensus       205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W-~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIr  283 (440)
T KOG0302|consen  205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW-KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIR  283 (440)
T ss_pred             EEecccCccceeeecccccccccccCccccceEeeeeccCce-eecCccccccccchhhhccCCccCceEEeeecCceEE
Confidence            45679999999999999543 589999999999998876332 2233457789999999999999999999999999999


Q ss_pred             EEeCCCCc---eeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC
Q 021319           93 LWDARSGK---CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        93 iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      |||+|.+.   ++....+.+.+..+.|+..-.+|++|+.||++.|||+|..+.                           
T Consensus       284 IWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~---------------------------  336 (440)
T KOG0302|consen  284 IWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS---------------------------  336 (440)
T ss_pred             EEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC---------------------------
Confidence            99999883   444433445555688888878899999999999999887532                           


Q ss_pred             CceEEEEeCCCCCceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcE----------------EEEEeeec
Q 021319          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEML----------------CVRTFTKL  232 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~----------------~~~~~~~~  232 (314)
                                 .+|+..+.-|..+|+++.|+|.. ..+++++.|.+|.+||+....                ..+.+..|
T Consensus       337 -----------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVH  405 (440)
T KOG0302|consen  337 -----------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVH  405 (440)
T ss_pred             -----------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEe
Confidence                       24566777899999999999954 578888999999999985311                11222233


Q ss_pred             c--cCeEEEEEccCC-cEEEEecCCce
Q 021319          233 E--WPVRTISFSHTG-DYIASASEDLF  256 (314)
Q Consensus       233 ~--~~v~~~~~sp~~-~~l~s~s~d~~  256 (314)
                      .  ..+..+.|+++- .+|+|-+.||.
T Consensus       406 qGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  406 QGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             cchhHhhhheeccCCCCeEEEecccce
Confidence            2  247778899874 67888888884

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.5e-24  Score=185.75  Aligned_cols=237  Identities=22%  Similarity=0.355  Sum_probs=204.8

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      +.+..|...|.++..-..+..+++|+.|-.+-+|.+....    ....+.+|..+|.++.|++.. .+|++|+.+|+|++
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~   96 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----AITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKV   96 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc----hhheeeccCCcceeeecCcch-hhhcccccCCceee
Confidence            4567799999999987778899999999999999875322    223478999999999999874 68899999999999


Q ss_pred             EeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEEEcCCc
Q 021319           94 WDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNG  171 (314)
Q Consensus        94 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g  171 (314)
                      ||+..++.++.+. +...+.++.|+|-+.+.+.|+.|..+++||.+...+.+.++. ..-+..+.++|+|.+.+.++++.
T Consensus        97 wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen   97 WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN  176 (825)
T ss_pred             eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence            9999887666543 345567888999999999999999999999997777766653 44577889999999999999999


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  251 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  251 (314)
                      .+++|++..++.+..+..|++.+..+.|+|..-.+++|+.|+++++||+++.+.+.........|.+.+|+|++..+++|
T Consensus       177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence            99999999999888999999999999999999999999999999999999988887776667789999999999999998


Q ss_pred             cCCc
Q 021319          252 SEDL  255 (314)
Q Consensus       252 s~d~  255 (314)
                      -.+.
T Consensus       257 ~q~s  260 (825)
T KOG0267|consen  257 EQIS  260 (825)
T ss_pred             chhh
Confidence            7664

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.3e-22  Score=175.63  Aligned_cols=239  Identities=18%  Similarity=0.360  Sum_probs=193.6

Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC-ceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE
Q 021319           64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP  142 (314)
Q Consensus        64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  142 (314)
                      .|....+.++|.|++ +.|++++.|+.|++|+..+- .-.......+ ....++...++++++++.++++.+|....++.
T Consensus        11 aht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g-~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETIDISG-ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchhhccC-ceeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence            688889999999985 59999999999999987654 2222222111 22233444567999999999999999887654


Q ss_pred             eee-eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC
Q 021319          143 IHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (314)
Q Consensus       143 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~  221 (314)
                      -.- .....++++++++-+|+.+++++.|-.|++.+..+......+.+|.++|.++.++|++.+||+.+-||.|++||+.
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            311 2234578899999999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             CcEEEEEeeec--------ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec---cCccceeEEcCCCCeeE
Q 021319          222 EMLCVRTFTKL--------EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC---RAAMNSVEWNPKYNLLA  290 (314)
Q Consensus       222 ~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~---~~~i~~v~~~~~~~~la  290 (314)
                      ++.+.+++.+.        ...+..++|+|++..|+....|+.|.+++...+.....+..   ...++.+.|+|+|++||
T Consensus       169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA  248 (933)
T KOG1274|consen  169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA  248 (933)
T ss_pred             cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence            88777665432        23467789999999999999999999999999887776642   33488999999999999


Q ss_pred             EEecCCcccccccceEEecccc
Q 021319          291 YAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       291 ~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +++-|        |.+-||+.+
T Consensus       249 As~~~--------g~I~vWnv~  262 (933)
T KOG1274|consen  249 ASTLD--------GQILVWNVD  262 (933)
T ss_pred             eeccC--------CcEEEEecc
Confidence            99988        467788876

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2e-23  Score=181.36  Aligned_cols=243  Identities=19%  Similarity=0.250  Sum_probs=187.5

Q ss_pred             cEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319           22 KVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (314)
Q Consensus        22 ~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~  100 (314)
                      .+..|.|+. +.++||||+..|.|-+||+..... ...-..+..|...++++.|++..+++|+|||.||+|++||++..+
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~  167 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK  167 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence            355677773 357899999999999999975221 112235778999999999999999999999999999999999876


Q ss_pred             eeeeEEecCc-eEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeee--eccCcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319          101 CSQQAELSGE-NINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL  176 (314)
Q Consensus       101 ~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  176 (314)
                      ......-..+ +..+.|+| .+..++++...|.+.+||+|.++.-..  .-+..++.++.|+|++.++++|+.|+++++|
T Consensus       168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW  247 (839)
T ss_pred             ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence            5544433333 33477877 578899999999999999998754322  2356789999999999999999999999999


Q ss_pred             eCCCCCceeeeee-cccceEEEEECCCCCE-EEEeeC--CCeEEEeeCCCcEE-EEEeeecccCeEEEEEcc-CCcEEEE
Q 021319          177 TYPSLRPLDTVVA-HTAGCYCIAIDPMGRY-FAVGSA--DSLVSLWDISEMLC-VRTFTKLEWPVRTISFSH-TGDYIAS  250 (314)
Q Consensus       177 ~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~-l~t~~~--dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp-~~~~l~s  250 (314)
                      +..+.++...... ...++.+++|-|..++ ||+++.  |-.|+|||++...+ ..++..|...+..++|.. |-..|.+
T Consensus       248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s  327 (839)
T KOG0269|consen  248 DMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS  327 (839)
T ss_pred             eccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence            9986654433332 3467899999999876 666654  55899999987654 467778888899999965 4567889


Q ss_pred             ecCCceEEEEECCCC
Q 021319          251 ASEDLFIDISNVHTG  265 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~  265 (314)
                      +|.|+.+....+..+
T Consensus       328 ~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  328 CSKDGTVLQHLFKNA  342 (839)
T ss_pred             ecCccHHHHhhhhcc
Confidence            999998865554443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=1.1e-22  Score=158.75  Aligned_cols=205  Identities=22%  Similarity=0.313  Sum_probs=164.5

Q ss_pred             ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc------------eeeeEE----ecCceEEEEEcc-CCCEEEE
Q 021319           63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK------------CSQQAE----LSGENINITYKP-DGTHIAV  125 (314)
Q Consensus        63 ~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~------------~~~~~~----~~~~~~~~~~~~-~~~~l~~  125 (314)
                      .-|.+.|+.|...+..+.+++||+.||.|.+||+.+..            |+....    ++..+..+.|-| |...+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            35889999999999989999999999999999987543            110000    111233455666 5667778


Q ss_pred             EeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC---CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCC
Q 021319          126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG---EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM  202 (314)
Q Consensus       126 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  202 (314)
                      ++.|.++++||..+.+.....+.+..+..-+|+|-.   -.++++..+-.++++|+.++....++.+|..+|.++.|+|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            899999999999999988888777777777787754   35667778889999999999999999999999999999998


Q ss_pred             CCE-EEEeeCCCeEEEeeCCCc-EEEEEe--------------eecccCeEEEEEccCCcEEEEecCCceEEEEECCCCC
Q 021319          203 GRY-FAVGSADSLVSLWDISEM-LCVRTF--------------TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       203 ~~~-l~t~~~dg~i~vwd~~~~-~~~~~~--------------~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~  266 (314)
                      ..+ ||+|+.||.|++||++.. -|...+              ..|...|..++|+.++.++++.+.|..+++|+..+|+
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            876 889999999999999754 222222              2355678999999999999999999999999998875


Q ss_pred             e
Q 021319          267 T  267 (314)
Q Consensus       267 ~  267 (314)
                      .
T Consensus       280 n  280 (397)
T KOG4283|consen  280 N  280 (397)
T ss_pred             c
Confidence            3

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5e-22  Score=156.68  Aligned_cols=231  Identities=20%  Similarity=0.299  Sum_probs=169.3

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC-----ceeeeEEecCceEEEEEccCCCEEEEEe-CCCcEEE
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-----KCSQQAELSGENINITYKPDGTHIAVGN-RDDELTI  134 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i  134 (314)
                      .+++|.+.|++++|+.++ ..|++++.|++||+|+++.-     ++.++...-.....+.|.||-+.+++.. ...++++
T Consensus        81 ~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            578999999999999874 68999999999999998753     2333322234677899999988776554 4556888


Q ss_pred             EEccCCeE----e---------eeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECC
Q 021319          135 LDVRKFKP----I---------HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP  201 (314)
Q Consensus       135 ~d~~~~~~----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  201 (314)
                      |-+...+.    .         ...++...+..+..--.+.++.+++.+..+.+|++. ++.+..+......-+..+++|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            87643211    0         011122334445555566788889999999999997 555666555555667889999


Q ss_pred             CCCEEEEeeCCCeEEEeeC---CCc-----EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC-------CC
Q 021319          202 MGRYFAVGSADSLVSLWDI---SEM-----LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT-------GR  266 (314)
Q Consensus       202 ~~~~l~t~~~dg~i~vwd~---~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~-------~~  266 (314)
                      +|+++|+++----|++|.+   +++     ..+-.+++|...|..++|||+...++|+|.||.+++||..-       .+
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk  318 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK  318 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence            9999999998888999986   222     23456789999999999999999999999999999999642       22


Q ss_pred             eEEEEe---c--cCccceeEEcCCCCeeEEEe
Q 021319          267 TVHQIP---C--RAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       267 ~~~~~~---~--~~~i~~v~~~~~~~~la~~~  293 (314)
                      .++..+   +  .+.-..++.+|++..||.+.
T Consensus       319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~  350 (420)
T KOG2096|consen  319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF  350 (420)
T ss_pred             HhhcCCcchhhcCCCceEEEeCCCCcEEEeec
Confidence            333331   1  23344899999999887554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.3e-22  Score=154.35  Aligned_cols=221  Identities=24%  Similarity=0.269  Sum_probs=155.8

Q ss_pred             cceeeecccccEEEEEECC--CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCC
Q 021319           12 HSREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGD   88 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~--~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D   88 (314)
                      ...+|+||.++|..++|..  .|..||||++||.|.||.-+.+  ...+..+...|...|++++|.|.+ +-+|++++.|
T Consensus        48 ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD  125 (299)
T KOG1332|consen   48 LLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD  125 (299)
T ss_pred             eeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence            4567899999999999987  7999999999999999987654  344556778899999999999976 3467899999


Q ss_pred             CcEEEEeCCCC-ce-e-eeEE-ecCceEEEEEccC---CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC
Q 021319           89 KTVRLWDARSG-KC-S-QQAE-LSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (314)
Q Consensus        89 ~~v~iwd~~~~-~~-~-~~~~-~~~~~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      |.|.|.+.++. .. . +... +.-...+++|.|.   |..+-.+..                              ..-
T Consensus       126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~------------------------------~~~  175 (299)
T KOG1332|consen  126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA------------------------------AKV  175 (299)
T ss_pred             CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc------------------------------ccc
Confidence            99999987654 11 1 1111 1222345666664   211000000                              001


Q ss_pred             CeEEEEcCCceEEEEeCCCCC--ceeeeeecccceEEEEECCCC----CEEEEeeCCCeEEEeeCCCcE---EEEEeeec
Q 021319          162 EMFFLTTGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMG----RYFAVGSADSLVSLWDISEML---CVRTFTKL  232 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~----~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~  232 (314)
                      ..+++++.|..+++|.+...+  .-.++.+|..-+..++|.|.-    .+||+++.||++.||-.+...   ....++..
T Consensus       176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f  255 (299)
T KOG1332|consen  176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF  255 (299)
T ss_pred             ceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC
Confidence            234445555555555554322  223467899999999999864    479999999999999876321   12334456


Q ss_pred             ccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          233 EWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      +.++..++||+.|..|+.++.|..+.+|--..
T Consensus       256 ~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  256 PDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            77899999999999999999999999996543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.4e-21  Score=161.02  Aligned_cols=261  Identities=15%  Similarity=0.199  Sum_probs=197.2

Q ss_pred             EEeeCCCc-EEEeecCCCCCCceeeEEeecCCCCE-EEEEEcCCCCCEEEEE-eCCCcEEEEeCCCCceee-eEEecCce
Q 021319           36 ASGSVDQT-ARVWHIEPHGHGKVKDIELRGHADSV-DQLCWDPKHADLIATA-SGDKTVRLWDARSGKCSQ-QAELSGEN  111 (314)
Q Consensus        36 ~s~~~D~~-v~iw~~~~~~~~~~~~~~~~~h~~~v-~~l~~~~~~~~~l~s~-~~D~~v~iwd~~~~~~~~-~~~~~~~~  111 (314)
                      .+++.|.. +.+||+.++.    ....+++..... ..+..  -++++++++ ..-..+.+|.+....... .....+..
T Consensus        11 sssS~d~~~~~~~dl~TGt----~~~~ykg~~~a~~~sl~~--l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v   84 (476)
T KOG0646|consen   11 SSSSFDPINCIVWDLRTGT----SLLQYKGSYLAQAASLTA--LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPV   84 (476)
T ss_pred             eccCCCCcceeEEecCCCc----eeEEecCcccccchhhhh--hchhheeeecccCccccccccCchhhhhhhcccccce
Confidence            33445554 9999997643    223344331111 11111  112344444 445678899987654433 33445667


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCC---------CC
Q 021319          112 INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---------SL  181 (314)
Q Consensus       112 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~  181 (314)
                      .+++-+|.|.+|+.|+..+.+.+|.+.++..+... .+-..+.++.|+-++.++++++.||.|.+|.+.         ..
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~  164 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV  164 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence            78999999999999999999999999998877654 455679999999999999999999999999752         34


Q ss_pred             CceeeeeecccceEEEEECCC--CCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEE
Q 021319          182 RPLDTVVAHTAGCYCIAIDPM--GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI  259 (314)
Q Consensus       182 ~~~~~~~~~~~~i~~i~~~~~--~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v  259 (314)
                      +|+..+..|.-+|+.+.+.+.  ..+++|++.|.++++||+..+..+.++ ..+.++.+++.+|-++.+..|+++|.|.+
T Consensus       165 ~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~  243 (476)
T KOG0646|consen  165 KPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQ  243 (476)
T ss_pred             cceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCCcceeEEEcccccEEEecCCcceEEe
Confidence            577778899999999988775  458999999999999999999877776 36678999999999999999999999999


Q ss_pred             EECCCCC----------------eEEEE-eccC--ccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          260 SNVHTGR----------------TVHQI-PCRA--AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       260 ~~~~~~~----------------~~~~~-~~~~--~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      .++.+..                .+..+ .+.+  .|+|++.|-|+.+|++|+.|        |.++||++
T Consensus       244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d--------g~VcvWdi  306 (476)
T KOG0646|consen  244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED--------GKVCVWDI  306 (476)
T ss_pred             eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC--------CCEEEEec
Confidence            8865422                11121 1334  89999999999999999977        78999987

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=4.6e-22  Score=168.57  Aligned_cols=240  Identities=18%  Similarity=0.293  Sum_probs=182.3

Q ss_pred             eeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCE--EEEEeCCCcEEE
Q 021319           57 VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH--IAVGNRDDELTI  134 (314)
Q Consensus        57 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~d~~i~i  134 (314)
                      .....+.||.+.|.+++..|. +.+|++|+.||+||||.+.+|+|+....+.+.+.+++|+|.+..  |+++.. ..+.+
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~-~~~~i  468 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVG-ECVLI  468 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEec-CceEE
Confidence            344578899999999999996 57999999999999999999999999999999999999997653  444433 33545


Q ss_pred             EEccCCe--------------------------------------EeeeeccCcceeeEEeccCCCeEEEEcCC---ceE
Q 021319          135 LDVRKFK--------------------------------------PIHRRKFGYEVNEIAWNMTGEMFFLTTGN---GTV  173 (314)
Q Consensus       135 ~d~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~  173 (314)
                      .+..-+.                                      ....+.+..++..+.||-.|.++++...+   ..+
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            4432110                                      01123455678899999999999887653   345


Q ss_pred             EEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecC
Q 021319          174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE  253 (314)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~  253 (314)
                      .+..+...+...-+....+-+.++.|+|...+|+++++. .|++||+.+...++++......+..++.+|.|.-|+.++.
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence            555554433332333345668999999999999988754 5999999886666555444456999999999999999999


Q ss_pred             CceEEEEECCCC-CeEEEEe-ccCccceeEEcCCCCeeEEEecCCccc
Q 021319          254 DLFIDISNVHTG-RTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       254 d~~v~v~~~~~~-~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      |+.+-.+|+.-+ ++.+.+. |...+++|+||+..++||+|++|+..+
T Consensus       628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~  675 (733)
T KOG0650|consen  628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI  675 (733)
T ss_pred             CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence            999999999754 4455554 466899999999999999999885433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.2e-22  Score=156.61  Aligned_cols=244  Identities=20%  Similarity=0.313  Sum_probs=202.0

Q ss_pred             EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEc-
Q 021319           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDV-  137 (314)
Q Consensus        60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~-  137 (314)
                      .++.||.+.|..++.... ..++.+++.|.+.+||.+.+++|..++..+ +...++.|++.+.++++++.|++-.||.. 
T Consensus       142 re~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a  220 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADST-QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA  220 (481)
T ss_pred             hhhcccccceeeehhhcC-CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence            367899999999887654 458999999999999999999999887654 45567999999999999999999999962 


Q ss_pred             ---cCCeE------------------------------------eeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319          138 ---RKFKP------------------------------------IHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (314)
Q Consensus       138 ---~~~~~------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (314)
                         +.+++                                    +.... +-..+.+..|-..++.+++++-|.+..+|+
T Consensus       221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD  300 (481)
T KOG0300|consen  221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD  300 (481)
T ss_pred             hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence               11110                                    00000 112345566778889999999999999999


Q ss_pred             CCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecCCce
Q 021319          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLF  256 (314)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~  256 (314)
                      .+..+++..+.+|..+.+.++-+|..+++++.+.|-+.++||.+.. ..+..|.+|...|.++.|.-+. .+++||.|..
T Consensus       301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrT  379 (481)
T KOG0300|consen  301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRT  379 (481)
T ss_pred             eccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCce
Confidence            9999999999999999999999999999999999999999999743 4567899999999999997755 4779999999


Q ss_pred             EEEEECCCC-CeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          257 IDISNVHTG-RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       257 v~v~~~~~~-~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |+|||+... .++..+....+++.|+.+..++.||.--+.+        -+|||+++-
T Consensus       380 vKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNR--------qvRlfDlnG  429 (481)
T KOG0300|consen  380 VKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNR--------QVRLFDLNG  429 (481)
T ss_pred             EEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCc--------eEEEEecCC
Confidence            999999864 4566777788999999999889999887665        689999864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.2e-23  Score=186.53  Aligned_cols=247  Identities=17%  Similarity=0.267  Sum_probs=195.2

Q ss_pred             cccEEEEEECCCCCE----EEEeeCCCcEEEeecCCC--CCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           20 KKKVHSVAWNCTGTK----LASGSVDQTARVWHIEPH--GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~----l~s~~~D~~v~iw~~~~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      ..+=+.|+|.+.|+.    |+.|..||.|.+|+...-  +...........|.++|..+.|++..+++++||+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            346788999998876    888889999999998652  11111122456899999999999999899999999999999


Q ss_pred             EeCCCCceeeeE---EecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccC---cceeeEEeccCC-CeEE
Q 021319           94 WDARSGKCSQQA---ELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEIAWNMTG-EMFF  165 (314)
Q Consensus        94 wd~~~~~~~~~~---~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~  165 (314)
                      ||+.+-+.....   ....++.+++|+..- ..|++++.++...|||+|..+++-.....   ..+..++|+|+. ..++
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            999874432222   234567789998754 45678888889999999998776554322   347789999987 4555


Q ss_pred             EEcCC---ceEEEEeCCC-CCceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319          166 LTTGN---GTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       166 ~~~~~---g~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  240 (314)
                      +++++   -.+.+||++. ..+++.+.+|..+|.+++|.+.+ ++|++++.|+.|.+|+..+++.+..+.....-+..+.
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~  303 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ  303 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence            55554   3677788753 45788889999999999999866 8899999999999999999999988877666689999


Q ss_pred             EccCCc-EEEEecCCceEEEEECCCCC
Q 021319          241 FSHTGD-YIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       241 ~sp~~~-~l~s~s~d~~v~v~~~~~~~  266 (314)
                      |+|... .++.++-||.|.|+.+....
T Consensus       304 w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  304 WCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ecCCCcchhhhheeccceeeeeeecCC
Confidence            999886 78888999999999987643

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=3.1e-21  Score=155.25  Aligned_cols=241  Identities=21%  Similarity=0.330  Sum_probs=174.5

Q ss_pred             ecccccEEEEEECCCCC--EEEEeeCCCcEEEeecCCCCC------------CceeeEEeecCCCCEEEEEEcCCCCCEE
Q 021319           17 TGHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGH------------GKVKDIELRGHADSVDQLCWDPKHADLI   82 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~--~l~s~~~D~~v~iw~~~~~~~------------~~~~~~~~~~h~~~v~~l~~~~~~~~~l   82 (314)
                      -+|.+.++.+.-++-++  +.++=+..|.|+||++...-+            ...+.+.+.+|...=++|+|+|.....+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            36888888888777765  444446789999999853211            1123356778999899999999766678


Q ss_pred             EEEeCCCcEEEEeCCCCceee-eEEec---CceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEe
Q 021319           83 ATASGDKTVRLWDARSGKCSQ-QAELS---GENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (314)
Q Consensus        83 ~s~~~D~~v~iwd~~~~~~~~-~~~~~---~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  157 (314)
                      +||..-+.|++|...++.... ..++.   ..+-.++|+|. ...+++++-|++|+|||+|....               
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~---------------  292 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK---------------  292 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc---------------
Confidence            899999999999988775432 11222   22234677774 45667777788888888775321               


Q ss_pred             ccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc---EEEEEeeeccc
Q 021319          158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM---LCVRTFTKLEW  234 (314)
Q Consensus       158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~---~~~~~~~~~~~  234 (314)
                                              ++......|.+.|+.|+|+....+||+|+.||+++|||+++.   +.+.+|+.|..
T Consensus       293 ------------------------~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~  348 (440)
T KOG0302|consen  293 ------------------------KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA  348 (440)
T ss_pred             ------------------------cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence                                    011122468889999999998889999999999999999864   45778999999


Q ss_pred             CeEEEEEccC-CcEEEEecCCceEEEEECCCCCe--------EE---------EEec--cCccceeEEcCCC-CeeEEEe
Q 021319          235 PVRTISFSHT-GDYIASASEDLFIDISNVHTGRT--------VH---------QIPC--RAAMNSVEWNPKY-NLLAYAG  293 (314)
Q Consensus       235 ~v~~~~~sp~-~~~l~s~s~d~~v~v~~~~~~~~--------~~---------~~~~--~~~i~~v~~~~~~-~~la~~~  293 (314)
                      +|++|.|+|. ...|++++.|..|.+||+..-.-        ..         -|-|  ...+-.|+||+.. .+|++.+
T Consensus       349 pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa  428 (440)
T KOG0302|consen  349 PITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA  428 (440)
T ss_pred             CeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence            9999999986 56788889999999999854211        11         1123  3468899999974 5667777


Q ss_pred             cCC
Q 021319          294 DDK  296 (314)
Q Consensus       294 ~d~  296 (314)
                      .|+
T Consensus       429 ~dG  431 (440)
T KOG0302|consen  429 IDG  431 (440)
T ss_pred             ccc
Confidence            775

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.7e-20  Score=147.40  Aligned_cols=239  Identities=23%  Similarity=0.431  Sum_probs=175.2

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc----eeeeE-EecCceEEEEEcc--CCCEEEEEeCCCcEEE
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQA-ELSGENINITYKP--DGTHIAVGNRDDELTI  134 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~----~~~~~-~~~~~~~~~~~~~--~~~~l~~~~~d~~i~i  134 (314)
                      ..+|.+-|.++.|++. +..+++|+.|++++|||.++..    +.... ...+.+..+.|.+  -|..+|+++.|+++.|
T Consensus         9 ~s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             ccCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            3589999999999987 5789999999999999975432    22222 2345667787764  4899999999999999


Q ss_pred             EEccC--C-----eEeeee---ccCcceeeEEeccC--CCeEEEEcCCceEEEEeCCCCCceee------ee-------e
Q 021319          135 LDVRK--F-----KPIHRR---KFGYEVNEIAWNMT--GEMFFLTTGNGTVEVLTYPSLRPLDT------VV-------A  189 (314)
Q Consensus       135 ~d~~~--~-----~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~------~~-------~  189 (314)
                      |.-..  .     +.+.+.   .....+.++.|.|.  |-.+++++.+|.+++|.......+..      +.       .
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            97521  1     112111   12356888999886  56778889999999998754322211      11       2


Q ss_pred             cccceEEEEECCCC---CEEEEeeCC-----CeEEEeeCCC----cEEEEEeeecccCeEEEEEccC----CcEEEEecC
Q 021319          190 HTAGCYCIAIDPMG---RYFAVGSAD-----SLVSLWDISE----MLCVRTFTKLEWPVRTISFSHT----GDYIASASE  253 (314)
Q Consensus       190 ~~~~i~~i~~~~~~---~~l~t~~~d-----g~i~vwd~~~----~~~~~~~~~~~~~v~~~~~sp~----~~~l~s~s~  253 (314)
                      +.....|+.|+|..   .+||.|+.+     +.+.||....    .+.+.++.++..+|.+|+|.|+    ..+||+|+.
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence            45567899999753   578888776     4789997643    3445677889999999999997    368999999


Q ss_pred             CceEEEEECCCCC-----------------eEEEEe----ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          254 DLFIDISNVHTGR-----------------TVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       254 d~~v~v~~~~~~~-----------------~~~~~~----~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      || |+||.+...+                 .+..+.    |.+.|-.+.||-.|.+|+++|+|        |.+|+|-
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD--------G~VRLWk  316 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD--------GCVRLWK  316 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCC--------ceeeehh
Confidence            99 9999987311                 112221    46789999999999999999987        6888884

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=1.3e-21  Score=168.33  Aligned_cols=237  Identities=22%  Similarity=0.321  Sum_probs=189.2

Q ss_pred             eeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC---ceEE-EEEcc-CCCEEEEEeCCCcE
Q 021319           58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---ENIN-ITYKP-DGTHIAVGNRDDEL  132 (314)
Q Consensus        58 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~---~~~~-~~~~~-~~~~l~~~~~d~~i  132 (314)
                      ...++.||+..|..++..+.  ..++++|.|+++++|+...+.......+.+   -+.. +++.+ ++-.+++|+.|..+
T Consensus         6 ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            45578999999999887653  478999999999999987766554333322   2222 56664 44568999999999


Q ss_pred             EEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC
Q 021319          133 TILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA  211 (314)
Q Consensus       133 ~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~  211 (314)
                      .+|.+....|.... .|...++++.....+. +++++-|.++++|.....  ...+.+|...|++++.-|++ .++||+.
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~l~gH~asVWAv~~l~e~-~~vTgsa  159 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VYSLQGHTASVWAVASLPEN-TYVTGSA  159 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hcccCCcchheeeeeecCCC-cEEeccC
Confidence            99999988887764 3556777777665665 889999999999986543  34588999999999999888 7899999


Q ss_pred             CCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcCCCCeeE
Q 021319          212 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLA  290 (314)
Q Consensus       212 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la  290 (314)
                      |.+|++|.-  ++++++|.+|...|+.+++-|++. ++|++.||.|+.|++ +|..+..+ .|..-|++++-.+++..++
T Consensus       160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Iv  235 (745)
T KOG0301|consen  160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIV  235 (745)
T ss_pred             cceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEE
Confidence            999999975  777899999999999999977655 679999999999999 66666554 4677899999777788999


Q ss_pred             EEecCCcccccccceEEecccc
Q 021319          291 YAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       291 ~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ++|+|        +++|||.-+
T Consensus       236 s~gED--------rtlriW~~~  249 (745)
T KOG0301|consen  236 STGED--------RTLRIWKKD  249 (745)
T ss_pred             EecCC--------ceEEEeecC
Confidence            99987        578888754

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.6e-21  Score=155.89  Aligned_cols=292  Identities=17%  Similarity=0.255  Sum_probs=207.4

Q ss_pred             eeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCce-eeEEeec--CCCCEEEEEEcCCCCCEEEEE
Q 021319            9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRG--HADSVDQLCWDPKHADLIATA   85 (314)
Q Consensus         9 ~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~-~~~~~~~--h~~~v~~l~~~~~~~~~l~s~   85 (314)
                      +.++++++.+|.+-|+.++||.++++|++||.|..+++|+++..-..++ +.+.+.+  |...|.+|.|+.. +..+.||
T Consensus        45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG  123 (609)
T KOG4227|consen   45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSG  123 (609)
T ss_pred             cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecC
Confidence            3467888999999999999999999999999999999999864222222 2233444  5568999999875 5788999


Q ss_pred             eCCCcEEEEeCCCCceeeeEEec---CceEEEEEccCCCEEEEEeCCCcEEEEEccCCe----EeeeeccCcceeeEEec
Q 021319           86 SGDKTVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFK----PIHRRKFGYEVNEIAWN  158 (314)
Q Consensus        86 ~~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~  158 (314)
                      +.+++|.+.|+.+.+.+......   +.+..+..+|-.+.+++.+.++.+.+||.+..+    ++.....+.....+.|+
T Consensus       124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~  203 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH  203 (609)
T ss_pred             CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence            99999999999988766555443   356678889999999999999999999998754    22223334455677888


Q ss_pred             cCCC-eEEEEcCCceEEEEeCCCC-Cceee------eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE-EEEe
Q 021319          159 MTGE-MFFLTTGNGTVEVLTYPSL-RPLDT------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-VRTF  229 (314)
Q Consensus       159 ~~~~-~~~~~~~~g~~~~~~~~~~-~~~~~------~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~  229 (314)
                      |... ++++....+-+.+|+.... +++..      ++.....-....|+|+|+.|.+--....-.+||+-...| +.++
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence            8765 4556677788889987532 22222      112222335678999999888776666778888866433 2222


Q ss_pred             e-ec-----ccCeEEEEEccCCcEEEEecCCceEEEEECCC-----C-----C-------------eEEEEe-ccCccce
Q 021319          230 T-KL-----EWPVRTISFSHTGDYIASASEDLFIDISNVHT-----G-----R-------------TVHQIP-CRAAMNS  279 (314)
Q Consensus       230 ~-~~-----~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~-----~-----~-------------~~~~~~-~~~~i~~  279 (314)
                      . +.     ...+.+++|-- ...++|||.+-.+++|.+..     |     +             .+..+. |+.-++.
T Consensus       284 D~N~~GY~N~~T~KS~~F~~-D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ  362 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFID-DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ  362 (609)
T ss_pred             cCCCCcceeeeeeeeeeeec-ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence            2 11     11356677754 44499999999999998642     1     1             011111 4556899


Q ss_pred             eEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          280 VEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       280 v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      |.|+|...+|.+.|..+        .+|||.
T Consensus       363 VRF~~H~~~l~SSGVE~--------~~KlWS  385 (609)
T KOG4227|consen  363 VRFSQHNNLLVSSGVEN--------SFKLWS  385 (609)
T ss_pred             eeecCCcceEeccchhh--------heeccc
Confidence            99999999999999665        577875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.6e-21  Score=158.56  Aligned_cols=241  Identities=15%  Similarity=0.229  Sum_probs=197.2

Q ss_pred             cccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        20 ~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      ..+|.+.+|.|+|+ .++++|..+....||+++.....+.  ...|+. ..+.....+|++ ++|+..+..|.|.+--..
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~--~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhak  333 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK--PPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAK  333 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeecccccccccc--CCCCcccchhheeEecCCC-CeEEEcccCceEEeehhh
Confidence            56899999999998 8999999999999999764433222  223443 345666777774 699999999999999999


Q ss_pred             CCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc--eeeEEeccCCCeEEEEcCCceEEE
Q 021319           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEV  175 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~  175 (314)
                      ++..+..+...+....++|+.+++.|++.+.+|.|.+||++....+++......  ...++.++++.++++|+..|-|.+
T Consensus       334 T~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNI  413 (514)
T KOG2055|consen  334 TKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNI  413 (514)
T ss_pred             hhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEE
Confidence            999888888999999999999999999999999999999999988877654433  455677899999999999999999


Q ss_pred             EeCC------CCCceeeeeecccceEEEEECCCCCEEEEeeCC--CeEEEeeCCCcEEEEEeeecc---cCeEEEEEccC
Q 021319          176 LTYP------SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD--SLVSLWDISEMLCVRTFTKLE---WPVRTISFSHT  244 (314)
Q Consensus       176 ~~~~------~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~---~~v~~~~~sp~  244 (314)
                      |+..      ..+|+..+..-...|+.+.|+|+.+.||.++..  ..+|+-.+.+......++...   ..|+|++|||.
T Consensus       414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~  493 (514)
T KOG2055|consen  414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN  493 (514)
T ss_pred             eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC
Confidence            9964      346777777777889999999999999988764  578888887765554443322   35899999999


Q ss_pred             CcEEEEecCCceEEEEECC
Q 021319          245 GDYIASASEDLFIDISNVH  263 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~  263 (314)
                      +.+||.|.++|.+++|.++
T Consensus       494 sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  494 SGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CceEEeecCCCceeeEeec
Confidence            9999999999999999765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.3e-19  Score=155.86  Aligned_cols=240  Identities=15%  Similarity=0.254  Sum_probs=185.1

Q ss_pred             ccceeeeccc-ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           11 LHSREYTGHK-KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        11 ~~~~~~~gH~-~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      ...+++.||. ..|.+++|+ ++.+|.|.+.+|+|.-||+.+..    +.+.+....++|.+++.+|.+ ..++.|+.||
T Consensus        59 ~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk----~~~~~d~~gg~IWsiai~p~~-~~l~IgcddG  132 (691)
T KOG2048|consen   59 FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK----QKYNIDSNGGAIWSIAINPEN-TILAIGCDDG  132 (691)
T ss_pred             eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc----eeEEecCCCcceeEEEeCCcc-ceEEeecCCc
Confidence            3567788885 479999999 67789999999999999997532    344566778899999999985 6778889999


Q ss_pred             cEEEEeCCCCceeeeEEe---cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee--ec---cCc----ceeeEEe
Q 021319           90 TVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RK---FGY----EVNEIAW  157 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~---~~~----~~~~~~~  157 (314)
                      .+...+...+.......+   ++..++++|+|++..++.|+.||.|++||....+.++.  .+   ...    -+.++.+
T Consensus       133 vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~  212 (691)
T KOG2048|consen  133 VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLF  212 (691)
T ss_pred             eEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEE
Confidence            888888887776544322   46788999999999999999999999999998877662  12   122    1344444


Q ss_pred             ccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE----EEEeeecc
Q 021319          158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC----VRTFTKLE  233 (314)
Q Consensus       158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~----~~~~~~~~  233 (314)
                      - ....++++...|++.+|+......++....|...|.|++.++++.++++++.|+.|.-|...+...    ......|.
T Consensus       213 L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~  291 (691)
T KOG2048|consen  213 L-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHA  291 (691)
T ss_pred             e-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCc
Confidence            3 567788899999999999998888888889999999999999999999999999999998765532    12223456


Q ss_pred             cCeEEEEEccCCcEEEEecCCceEEE
Q 021319          234 WPVRTISFSHTGDYIASASEDLFIDI  259 (314)
Q Consensus       234 ~~v~~~~~sp~~~~l~s~s~d~~v~v  259 (314)
                      ..|.+++..++  .+++|+.|..+.+
T Consensus       292 hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  292 HDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             ccceeeeeecc--eEEecceeeEEEE
Confidence            66777766555  6666666655433

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=5.8e-22  Score=156.79  Aligned_cols=266  Identities=17%  Similarity=0.290  Sum_probs=188.1

Q ss_pred             cccccEEEEEECCCC----CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           18 GHKKKVHSVAWNCTG----TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        18 gH~~~V~~v~~s~~g----~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      .|...-+.++|+.|-    .++|.||.-|.|||.|+....    ..-.+.+|..+|+.+.++|...++++|+|.|.+||+
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~----~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRl  162 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ----CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRL  162 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh----hccceeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence            377778889998663    479999999999999987543    233578999999999999999999999999999999


Q ss_pred             EeCCCCceeeeEE----ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC
Q 021319           94 WDARSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        94 wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      |++++..|+..+.    +..+++++.|+++|..+++++.|.++++|++...+....++..     ..|++++...=+...
T Consensus       163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s-----~~~~~~~t~~pfpt~  237 (385)
T KOG1034|consen  163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS-----ITYSPNKTTRPFPTP  237 (385)
T ss_pred             EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh-----cccCCCCccCcCCcc
Confidence            9999999987653    3567889999999999999999999999999754332222211     223333221000000


Q ss_pred             CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc--------------EEEEEeeecccC
Q 021319          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--------------LCVRTFTKLEWP  235 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~--------------~~~~~~~~~~~~  235 (314)
                        ...+.++      .+-..|...|-|+.|-  |.++++-+-++.|..|..-+.              ..+.++......
T Consensus       238 --~~~fp~f------st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~  307 (385)
T KOG1034|consen  238 --KTHFPDF------STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD  307 (385)
T ss_pred             --ccccccc------cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence              0000000      0122466666676664  678888888999999987221              112223222333


Q ss_pred             eEEE--EEccCCcEEEEecCCceEEEEECCCCCeE--EEEe---ccCccceeEEcCCCCeeEEEecCCcccccc
Q 021319          236 VRTI--SFSHTGDYIASASEDLFIDISNVHTGRTV--HQIP---CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  302 (314)
Q Consensus       236 v~~~--~~sp~~~~l~s~s~d~~v~v~~~~~~~~~--~~~~---~~~~i~~v~~~~~~~~la~~~~d~~~~~~~  302 (314)
                      +.-+  +|.|-.++||.|.+.|.+.+||+....+.  .++.   ....|+..+|+.++.+|+...+|+..|.++
T Consensus       308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            4444  56688999999999999999999876543  2222   245799999999999999999997766543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.9e-22  Score=181.15  Aligned_cols=282  Identities=20%  Similarity=0.344  Sum_probs=207.1

Q ss_pred             EEEEECCCCC-EEEEe----------eCCCcEEEeecCCCCCCc-eeeEEeecCCCCEEEEEEcCCCCC---EEEEEeCC
Q 021319           24 HSVAWNCTGT-KLASG----------SVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKHAD---LIATASGD   88 (314)
Q Consensus        24 ~~v~~s~~g~-~l~s~----------~~D~~v~iw~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~---~l~s~~~D   88 (314)
                      -.++|+|++. ++++|          +.+.++.||.++...... .....-..-...-+.|+|.+.+..   +|+.|..|
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence            3578999986 45544          335577777765322110 010000112334578999877654   69999999


Q ss_pred             CcEEEEeCCCC---ce---e-eeEEecCceEEEEEccCCC-EEEEEeCCCcEEEEEccCCeEeeee---ccCcceeeEEe
Q 021319           89 KTVRLWDARSG---KC---S-QQAELSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRR---KFGYEVNEIAW  157 (314)
Q Consensus        89 ~~v~iwd~~~~---~~---~-~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~  157 (314)
                      |.|-+||...-   ..   + ....+++.+..+.|++... +|++|+.+|.|.|||+.+.+.-...   ....++.+++|
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            99999997642   11   1 2234567778899999665 9999999999999999876543332   23457889999


Q ss_pred             ccCCC-eEEEEcCCceEEEEeCCCCCceeeeeeccc--ceEEEEECCCC-CEEEEeeCCC---eEEEeeCCC-cEEEEEe
Q 021319          158 NMTGE-MFFLTTGNGTVEVLTYPSLRPLDTVVAHTA--GCYCIAIDPMG-RYFAVGSADS---LVSLWDISE-MLCVRTF  229 (314)
Q Consensus       158 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~-~~l~t~~~dg---~i~vwd~~~-~~~~~~~  229 (314)
                      +..-. .++.++.+|+..+||++..+++..+.-+..  .+..++|+|+. +.+++++.|.   .|.+||++. ...++.+
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~  249 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL  249 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence            87654 455666778999999998887766654444  36789999986 4566666654   699999874 3456778


Q ss_pred             eecccCeEEEEEccCC-cEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCC-eeEEEecCCcccccccceE
Q 021319          230 TKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVF  306 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~-~la~~~~d~~~~~~~~~~~  306 (314)
                      ++|...|.+++|++.+ ++|+|.+.|+.|.+|+..+|+.+.+++. ...+..|.|+|..+ .+|.++-|        |.+
T Consensus       250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd--------gkI  321 (1049)
T KOG0307|consen  250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD--------GKI  321 (1049)
T ss_pred             cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheec--------cce
Confidence            8999999999999977 8999999999999999999999999986 34689999999876 77777766        678


Q ss_pred             EeccccC
Q 021319          307 RIYGFEN  313 (314)
Q Consensus       307 ~~~~~~~  313 (314)
                      .||.++.
T Consensus       322 ~I~sl~~  328 (1049)
T KOG0307|consen  322 SIYSLQG  328 (1049)
T ss_pred             eeeeeec
Confidence            8988753

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.88  E-value=2.8e-21  Score=167.07  Aligned_cols=243  Identities=17%  Similarity=0.229  Sum_probs=192.9

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC--CCEEEEEeCCCcEEEEe
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH--ADLIATASGDKTVRLWD   95 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s~~~D~~v~iwd   95 (314)
                      +-+..+++++.||+|++|++|..-|.+|||++..-.    .......|...|.+|.++...  ..+|+|++.|..|.++|
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~----~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D  532 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE----YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD  532 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhh----hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence            345679999999999999999999999999986422    223467899999999997432  46899999999999999


Q ss_pred             CCCC-ceeeeEEe-cCceEEEEEccCC--CEEEEEeCCCcEEEEEccC---CeEe--e-eeccCcceeeEEeccCCCeEE
Q 021319           96 ARSG-KCSQQAEL-SGENINITYKPDG--THIAVGNRDDELTILDVRK---FKPI--H-RRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        96 ~~~~-~~~~~~~~-~~~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~---~~~~--~-~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      .... ..++.+.. ...+.++.|.-.|  ..+++++.|..|.+--.++   ....  . .......+..++..|.-.+.+
T Consensus       533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV  612 (1080)
T ss_pred             cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence            8533 22333332 3445567776665  6788888887765432221   1111  1 111234577888889999999


Q ss_pred             EEcCCceEEEEeCCCCCceeeee---ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS  242 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  242 (314)
                      +++.|.+|++|+....+..+.+.   .|++..-.+..+|.|.|+|+.+.|.++.++|.-+++|+.+..+|...|+.+.|.
T Consensus       613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL  692 (1080)
T ss_pred             EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence            99999999999999888777765   466778889999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEecCCceEEEEECCC
Q 021319          243 HTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       243 p~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      +|-+.|++++.||.|+||.+..
T Consensus       693 nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  693 NDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ccchhheeecCCceEEEEECch
Confidence            9999999999999999998754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=2.2e-20  Score=160.59  Aligned_cols=271  Identities=17%  Similarity=0.256  Sum_probs=203.3

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~  101 (314)
                      -|+.++|.|||..|+-+.. ..+.+||.+.+.    .-..+++|++.|++++|+.+ +.+++||+.|+.|.+|+..-.- 
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~----llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG-   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT----LLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEG-   86 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcc----cccccccccceEEEEEEccC-CceeccCCCceeEEEecccccc-
Confidence            7999999999988776653 468899987543    23468999999999999987 5799999999999999864221 


Q ss_pred             eeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC
Q 021319          102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL  181 (314)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  181 (314)
                      .....+...+-+|.|+|-...|++++- ..+-+|.... +.+...+....+.+++|..+|.+++.+..+|++.+-+....
T Consensus        87 ~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE  164 (1081)
T KOG1538|consen   87 ILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE  164 (1081)
T ss_pred             eeeeccCCeeeEeecCchHHHhhhcch-hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence            223344556678999999888888764 3456776543 23344455667899999999999999999999998765433


Q ss_pred             Cceee--eeecccceEEEEECCCC-----CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC
Q 021319          182 RPLDT--VVAHTAGCYCIAIDPMG-----RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED  254 (314)
Q Consensus       182 ~~~~~--~~~~~~~i~~i~~~~~~-----~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d  254 (314)
                      .....  .-+.+++|++++|+|+.     ..+++.+=..++.+|.++ ++.+..-........|+++.|+|.|+..|+.|
T Consensus       165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd  243 (1081)
T KOG1538|consen  165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSD  243 (1081)
T ss_pred             cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCC
Confidence            33222  22456789999999974     356666666667777664 44444334456677899999999999999999


Q ss_pred             ceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          255 LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       255 ~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +.++++. +.|-.+.++.. ...|.+|+.+|++...+.|..|        ||+-+|++
T Consensus       244 k~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD--------GTiACyNl  292 (1081)
T KOG1538|consen  244 KQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD--------GTIACYNL  292 (1081)
T ss_pred             CceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEcc--------Ceeehhhh
Confidence            9999995 45555655433 4569999999999999999988        68888876

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=1.4e-18  Score=148.17  Aligned_cols=269  Identities=14%  Similarity=0.223  Sum_probs=177.3

Q ss_pred             EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC-CCcee--eeEEecCce
Q 021319           35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGKCS--QQAELSGEN  111 (314)
Q Consensus        35 l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~~--~~~~~~~~~  111 (314)
                      .++...|+.|++|++++.  +.........+......++++|++..+.+++..++.|.+|++. ++...  .........
T Consensus         5 y~~~~~~~~I~~~~~~~~--g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p   82 (330)
T PRK11028          5 YIASPESQQIHVWNLNHE--GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP   82 (330)
T ss_pred             EEEcCCCCCEEEEEECCC--CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence            444577999999999642  2222222222345567789999864334445568999999986 34332  222233455


Q ss_pred             EEEEEccCCCEEEEEeC-CCcEEEEEccCC----eEeeeeccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCCCCcee
Q 021319          112 INITYKPDGTHIAVGNR-DDELTILDVRKF----KPIHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLD  185 (314)
Q Consensus       112 ~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~  185 (314)
                      ..++++|+++.++++.. ++.+.+|++...    +.+...........++++|+++.++++. .++.+.+|++.....+.
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence            67999999998887764 788999998642    1222222234466788999998886554 56999999986532221


Q ss_pred             e-----ee-ecccceEEEEECCCCCEEEEeeC-CCeEEEeeCCC--c--EEEEEeeecc------cCeEEEEEccCCcEE
Q 021319          186 T-----VV-AHTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISE--M--LCVRTFTKLE------WPVRTISFSHTGDYI  248 (314)
Q Consensus       186 ~-----~~-~~~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~--~--~~~~~~~~~~------~~v~~~~~sp~~~~l  248 (314)
                      .     .. .....+..++|+|++++++++.. ++.|.+||+..  +  +.++.+....      .....+.|+|++++|
T Consensus       163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL  242 (330)
T ss_pred             ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence            0     11 12345678999999999987776 89999999973  2  3344432211      123468899999999


Q ss_pred             EEecC-CceEEEEECCCCC----eEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          249 ASASE-DLFIDISNVHTGR----TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       249 ~s~s~-d~~v~v~~~~~~~----~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +++.. ++.|.+|++....    .+..++.....+.++|+|++++|++++..       .+++.||.++
T Consensus       243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~-------~~~v~v~~~~  304 (330)
T PRK11028        243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK-------SHHISVYEID  304 (330)
T ss_pred             EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc-------CCcEEEEEEc
Confidence            98854 6889999985432    22333333456789999999999888753       3677787664

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=1.7e-20  Score=156.04  Aligned_cols=260  Identities=15%  Similarity=0.250  Sum_probs=196.4

Q ss_pred             cEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEe-ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           22 KVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        22 ~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      .+.+++|+....+ .++.+.|+.+++|.-..+ .+.++..+. .|.  .-.|++.... .-++++|+..+.|+|||++..
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd--~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~k  111 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGD--NAFCVACASQ-SLYEISGGQSGCVKIWDLRAK  111 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCC-CCccceeeccccc--hHHHHhhhhc-ceeeeccCcCceeeehhhHHH
Confidence            4999999876643 344467999999975432 233333322 222  2233333222 357899999999999999977


Q ss_pred             ceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEeccCCCeEE-EEcCCceEEE
Q 021319          100 KCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFF-LTTGNGTVEV  175 (314)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~g~~~~  175 (314)
                      .+.+.... ...+..+.++-...+||+++..|.|.+..+.+...-.....  +..++-+.|++....++ .++.+|.+.+
T Consensus       112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl  191 (673)
T KOG4378|consen  112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL  191 (673)
T ss_pred             HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence            77665543 34566788999999999999999999999887654443333  45677889999877655 4578899999


Q ss_pred             EeCCCCCceeee-eecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecC
Q 021319          176 LTYPSLRPLDTV-VAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE  253 (314)
Q Consensus       176 ~~~~~~~~~~~~-~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~  253 (314)
                      ||.....|...+ ..|..+...|+|+|.+ .+|++-+-|..|.+||.+..+....+ .++.|...++|+|+|.+|+.|+.
T Consensus       192 wDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  192 WDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             EeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEeecC
Confidence            999888776554 5799999999999965 57889999999999999876655554 46679999999999999999999


Q ss_pred             CceEEEEECCC-CCeEEEEe-ccCccceeEEcCCC
Q 021319          254 DLFIDISNVHT-GRTVHQIP-CRAAMNSVEWNPKY  286 (314)
Q Consensus       254 d~~v~v~~~~~-~~~~~~~~-~~~~i~~v~~~~~~  286 (314)
                      .|.|..||++. ..++..+. |...|++|+|-|..
T Consensus       271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99999999975 44555544 56789999999875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=1.5e-17  Score=145.64  Aligned_cols=286  Identities=27%  Similarity=0.491  Sum_probs=213.0

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEE-cCCCCCEEEEEeC-CCcE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCW-DPKHADLIATASG-DKTV   91 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~~~~l~s~~~-D~~v   91 (314)
                      .+.+|...+..+.+.+.+..++.++.|+.+.+|+.....   .....+.++. ..+..+.+ .++....++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence            456899999999999999999999999999999986532   1222344433 36777766 6665435555445 9999


Q ss_pred             EEEeCCC-CceeeeEEec-CceEEEEEccCCCEEEEEeC-CCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEE
Q 021319           92 RLWDARS-GKCSQQAELS-GENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        92 ~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  167 (314)
                      ++||... .........+ ..+..+.++|++..++.++. ++.+.+|++.....+.... +...+..++|+|.+..++++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence            9999987 4444444433 34446999999998888875 9999999998866665554 46779999999888844444


Q ss_pred             -cCCceEEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccC
Q 021319          168 -TGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHT  244 (314)
Q Consensus       168 -~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~  244 (314)
                       ..++.+.+|+........ .+..|.... ...|+|++..+++++.|+.+++|++..... +..+..|...+.++.|+|+
T Consensus       217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  295 (466)
T COG2319         217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD  295 (466)
T ss_pred             ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCC
Confidence             889999999776555555 466777664 448999998999999999999999986654 4444566788999999999


Q ss_pred             CcEEEEecCCceEEEEECCCCCeEEEEe---ccCccceeEEcCCCCeeEEEe-cCCcccccccceEEecccc
Q 021319          245 GDYIASASEDLFIDISNVHTGRTVHQIP---CRAAMNSVEWNPKYNLLAYAG-DDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~---~~~~i~~v~~~~~~~~la~~~-~d~~~~~~~~~~~~~~~~~  312 (314)
                      +..+++++.|+.+.+|+..+........   +...+..+.|++++..++.++ .|        +.+++|.++
T Consensus       296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--------~~~~~~~~~  359 (466)
T COG2319         296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD--------GTIRLWDLR  359 (466)
T ss_pred             CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCC--------CcEEeeecC
Confidence            9999999999889999988877665553   344689999943324555553 33        566667664

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.86  E-value=2.2e-20  Score=143.81  Aligned_cols=283  Identities=15%  Similarity=0.136  Sum_probs=188.2

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee-cCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ..+++|.+.|+++.|-.++ +|.+|..-|.|++|.+.+..    ....++ -|...|..+...|+  ..+.+-+.|..+.
T Consensus         8 fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r----~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~   80 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTER----DLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLI   80 (323)
T ss_pred             eEeccccchheehhhccch-hhhcccccceEEEEEeecCc----cchhhhhhccceeeceeecCC--cchhhcCCCceEE
Confidence            3456999999999997665 59999999999999997632    222334 46677888888775  4577899999999


Q ss_pred             EEeCCCCceeeeEEecCceEE---EEEccCCCE---EEEE-eCCC-cEEEEEccCCeEeeeecc-----CcceeeEEecc
Q 021319           93 LWDARSGKCSQQAELSGENIN---ITYKPDGTH---IAVG-NRDD-ELTILDVRKFKPIHRRKF-----GYEVNEIAWNM  159 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~---l~~~-~~d~-~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~  159 (314)
                      +|++..+..+.....-.+.+.   .++.++++.   +... ++.. .+.+-|......+.....     ...+.+..+..
T Consensus        81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~  160 (323)
T KOG0322|consen   81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH  160 (323)
T ss_pred             EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence            999987655443322221111   122232221   1111 1110 123333332222211110     11233433322


Q ss_pred             -CC--CeEEEEcCCceEEEEeCCCCC----------ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC--cE
Q 021319          160 -TG--EMFFLTTGNGTVEVLTYPSLR----------PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE--ML  224 (314)
Q Consensus       160 -~~--~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~--~~  224 (314)
                       ++  -.++++.++|.+.+|+.....          .......|..++.++.+.+.-..=++|+.+..+..|.+..  +.
T Consensus       161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs  240 (323)
T KOG0322|consen  161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS  240 (323)
T ss_pred             cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence             22  245677889999999986642          1222346889999999988766677888888899998853  22


Q ss_pred             E--EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCccccc
Q 021319          225 C--VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQA  301 (314)
Q Consensus       225 ~--~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~  301 (314)
                      +  ..+...-.-.|..+.+-||++.+|||++|++++||+-.+..++..+. |++.|++|+|+|+.+++|.+|.|      
T Consensus       241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD------  314 (323)
T KOG0322|consen  241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD------  314 (323)
T ss_pred             ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC------
Confidence            1  12222222347889999999999999999999999999999887765 57899999999999999999988      


Q ss_pred             ccceEEeccc
Q 021319          302 DEGVFRIYGF  311 (314)
Q Consensus       302 ~~~~~~~~~~  311 (314)
                        +.|-+|.+
T Consensus       315 --~rISLWkL  322 (323)
T KOG0322|consen  315 --ARISLWKL  322 (323)
T ss_pred             --ceEEeeec
Confidence              57778865

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=3.2e-20  Score=154.38  Aligned_cols=256  Identities=16%  Similarity=0.250  Sum_probs=185.0

Q ss_pred             CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC--ceeeeEEecC-ceEEEEEcc
Q 021319           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG--KCSQQAELSG-ENINITYKP  118 (314)
Q Consensus        42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~--~~~~~~~~~~-~~~~~~~~~  118 (314)
                      ..+++||+...... ...... ...-.+..++|+..+.-.+++.+.|..+++|.-...  .+.......+ ...++....
T Consensus        12 d~~kl~D~s~~~~~-~~~~~~-t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s   89 (673)
T KOG4378|consen   12 DKTKLSDFSDLETK-SEYVHQ-TAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS   89 (673)
T ss_pred             CceEEeecccccCc-cccccC-CCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence            46899998643211 111111 111238899998654334566677999999965432  2222222222 223444445


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEeeee--ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeec-ccceE
Q 021319          119 DGTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH-TAGCY  195 (314)
Q Consensus       119 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~i~  195 (314)
                      ...++++|+..+.++|||++. +.+++.  .+..++.++.++-.+.+++.....|.+.+-...+......+... ...+.
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR  168 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR  168 (673)
T ss_pred             cceeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence            568899999999999999984 444443  34467889999999999999999999999887766555555422 34566


Q ss_pred             EEEECCCCCE-EEEeeCCCeEEEeeCCCcEEEE-EeeecccCeEEEEEccCC-cEEEEecCCceEEEEECCCCCeEEEEe
Q 021319          196 CIAIDPMGRY-FAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       196 ~i~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      -+.++|..+. |.+++.+|.|++||+.....+. -.+.|..|...|||+|.. .+|++.+.|.+|.+||....+....+.
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~  248 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT  248 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee
Confidence            8999998775 6688999999999997665543 345788999999999975 678899999999999998777767777


Q ss_pred             ccCccceeEEcCCCCeeEEEecCCcccc
Q 021319          273 CRAAMNSVEWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       273 ~~~~i~~v~~~~~~~~la~~~~d~~~~~  300 (314)
                      +..+..+|+|.++|.+|+.|..-+.+|+
T Consensus       249 y~~Plstvaf~~~G~~L~aG~s~G~~i~  276 (673)
T KOG4378|consen  249 YSHPLSTVAFSECGTYLCAGNSKGELIA  276 (673)
T ss_pred             ecCCcceeeecCCceEEEeecCCceEEE
Confidence            7889999999999999998887766654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.8e-19  Score=140.30  Aligned_cols=246  Identities=16%  Similarity=0.254  Sum_probs=187.7

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+++|.-+|++++||+||..|+|+|.|.++++||+..+.  ....++   -..+|..+.|+|.+.+.++..-.+..-
T Consensus        57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~rir---f~spv~~~q~hp~k~n~~va~~~~~sp  131 (405)
T KOG1273|consen   57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKRIR---FDSPVWGAQWHPRKRNKCVATIMEESP  131 (405)
T ss_pred             hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeEEE---ccCccceeeeccccCCeEEEEEecCCc
Confidence            346789999999999999999999999999999999997543  333333   367899999999887777777777666


Q ss_pred             EEEeCCCCceeeeEEec------CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEeccCCCe
Q 021319           92 RLWDARSGKCSQQAELS------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEM  163 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~  163 (314)
                      .+-+...+... .+...      ....+..|.+.|+++++|...|.+.++|..+.+.+...+.  ...+..+.++..+..
T Consensus       132 ~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~  210 (405)
T KOG1273|consen  132 VVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF  210 (405)
T ss_pred             EEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE
Confidence            67666543211 11111      1112234889999999999999999999999988765443  357888999999999


Q ss_pred             EEEEcCCceEEEEeCCCC---------Cceeeee--ecccceEEEEECCCCCEEEEeeCC-CeEEEeeCCCcEEEEEeee
Q 021319          164 FFLTTGNGTVEVLTYPSL---------RPLDTVV--AHTAGCYCIAIDPMGRYFAVGSAD-SLVSLWDISEMLCVRTFTK  231 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~---------~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~~d-g~i~vwd~~~~~~~~~~~~  231 (314)
                      ++.-+.|..++.|+....         ++...++  .....-.+++|+.+|.|++.++.. ..+.+|....+..++.+.+
T Consensus       211 liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG  290 (405)
T KOG1273|consen  211 LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG  290 (405)
T ss_pred             EEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence            999999999999986521         1111111  122234688999999998877654 4799999999998988887


Q ss_pred             cc-cCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          232 LE-WPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       232 ~~-~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      .+ .....+.|+|--..+++- ..|.+++|....
T Consensus       291 ~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  291 TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             Cchhheeecccccceeeeeec-cCCceEEEEeec
Confidence            76 467789999999999888 778899998654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=3.7e-17  Score=143.10  Aligned_cols=287  Identities=26%  Similarity=0.451  Sum_probs=214.3

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeC-CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~-D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ....+.+|...|..++|+|++..+++++. |+.+++|++...    .....+.+|...|.++.|+|.+...+++++.|+.
T Consensus       147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  222 (466)
T COG2319         147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT  222 (466)
T ss_pred             EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----ceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence            34667899999999999999999999986 999999998751    1233456799999999999875436666699999


Q ss_pred             EEEEeCCCCceee-eEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE-eeee-ccCcceeeEEeccCCCeEEEE
Q 021319           91 VRLWDARSGKCSQ-QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRR-KFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        91 v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      +++||...+.... ....+.......|+|++..+++++.++.+.+|+.+.... .... .+...+..+.+.|.+..++++
T Consensus       223 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  302 (466)
T COG2319         223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG  302 (466)
T ss_pred             EEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence            9999988776655 333332222117899998889999999999999986554 3222 345678888999988888888


Q ss_pred             cCCceEEEEeCCCCCceeeee--ecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319          168 TGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  244 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~  244 (314)
                      ..++.+.+|+...........  .|...+..+.+.+++..++.+ ..|+.+.+|++............ ..+..+.+++ 
T Consensus       303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-  380 (466)
T COG2319         303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-  380 (466)
T ss_pred             eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-
Confidence            777889999776655444443  677778899884332455555 67889999999877622222222 2288899999 


Q ss_pred             CcEEEE-ecCCceEEEEECCCCCeEEEEecc-CccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          245 GDYIAS-ASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       245 ~~~l~s-~s~d~~v~v~~~~~~~~~~~~~~~-~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ...+.+ ++.++.+.+|+............. ..+....+.+++..++.++.+        +++++|+..
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  442 (466)
T COG2319         381 DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSD--------NTIRLWDLK  442 (466)
T ss_pred             CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCC--------CcEEEEecc
Confidence            544444 689999999999988777766655 789999999999999886655        577788764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.85  E-value=9.8e-20  Score=149.99  Aligned_cols=234  Identities=15%  Similarity=0.277  Sum_probs=173.6

Q ss_pred             EeecCCCCEEEEEEcCCCC-CEEEEEeCCCcEEEEeCCCCce----eeeEE-ecCceEEEEEccC-CCEEEEEeCCCcEE
Q 021319           61 ELRGHADSVDQLCWDPKHA-DLIATASGDKTVRLWDARSGKC----SQQAE-LSGENINITYKPD-GTHIAVGNRDDELT  133 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~-~~l~s~~~D~~v~iwd~~~~~~----~~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~  133 (314)
                      ..+-+.+.|++++|+|... .++++|..-|.|-+||++....    +..+. ....+.++.|+|. ...+++.+.||+|+
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR  260 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence            4556888999999999887 7899999999999999963321    11222 2334567889884 56788999999999


Q ss_pred             EEEccCCeEeeeecc---CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc-eeeeeecccceEEEEECCCCC-EEEE
Q 021319          134 ILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP-LDTVVAHTAGCYCIAIDPMGR-YFAV  208 (314)
Q Consensus       134 i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~-~l~t  208 (314)
                      .-|++.......+..   ........++.....++++..-|...+|+++.... ...+..|...|..++++|-.. +|||
T Consensus       261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT  340 (498)
T KOG4328|consen  261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT  340 (498)
T ss_pred             eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence            999986532211111   11234455666667777777778999999876543 445567888999999999765 5899


Q ss_pred             eeCCCeEEEeeCCCcEEE----EEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC----CCCCeEEEEeccC-----
Q 021319          209 GSADSLVSLWDISEMLCV----RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV----HTGRTVHQIPCRA-----  275 (314)
Q Consensus       209 ~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~----~~~~~~~~~~~~~-----  275 (314)
                      ++.|++.+|||+++....    .....|...|.+..|||++-.|+|-+.|..|+|||.    ..-.++..+.|..     
T Consensus       341 ~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw  420 (498)
T KOG4328|consen  341 ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW  420 (498)
T ss_pred             cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccccc
Confidence            999999999999864322    222368889999999999988999999999999998    3445555665522     


Q ss_pred             -ccceeEEcCCCCeeEEEec
Q 021319          276 -AMNSVEWNPKYNLLAYAGD  294 (314)
Q Consensus       276 -~i~~v~~~~~~~~la~~~~  294 (314)
                       +....+|.|+.++++.|--
T Consensus       421 lT~fKA~W~P~~~li~vg~~  440 (498)
T KOG4328|consen  421 LTPFKAAWDPDYNLIVVGRY  440 (498)
T ss_pred             ccchhheeCCCccEEEEecc
Confidence             3567899999999887763

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=1e-19  Score=155.65  Aligned_cols=134  Identities=18%  Similarity=0.284  Sum_probs=110.8

Q ss_pred             EEEEcCCceEEEEeCCC-------CCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC
Q 021319          164 FFLTTGNGTVEVLTYPS-------LRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP  235 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~  235 (314)
                      +++++++|.|++|.+..       .++...+..|...|+.+.|+|- .+.|++++.|-+|++||+..++....+.+|...
T Consensus       643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq  722 (1012)
T KOG1445|consen  643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ  722 (1012)
T ss_pred             eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc
Confidence            46788899999998642       3455667889999999999994 578999999999999999999888889999999


Q ss_pred             eEEEEEccCCcEEEEecCCceEEEEECCCCCe-EEEEe--ccCccceeEEcCCCCeeEEEecCCc
Q 021319          236 VRTISFSHTGDYIASASEDLFIDISNVHTGRT-VHQIP--CRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       236 v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~-~~~~~--~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      |..++|||+|+.+||...||.++|++.+++.. +++-+  -..+-..|-|.-++++++..|=|+.
T Consensus       723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~  787 (1012)
T KOG1445|consen  723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS  787 (1012)
T ss_pred             eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence            99999999999999999999999999887643 33321  1234457788889999988887764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.5e-19  Score=148.39  Aligned_cols=205  Identities=23%  Similarity=0.425  Sum_probs=159.9

Q ss_pred             ecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           17 TGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      .+|+++|.+|.|+..- +.|||||.|++|++||+++..    +...+..|.+.|.++.|+|..+.+|++|+.|++|++.|
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~----p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK----PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD  315 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC----cceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence            4799999999999875 579999999999999998754    22345679999999999999999999999999999999


Q ss_pred             CCC-CceeeeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCC-eEeeeec-cCcceeeEEeccCC-CeEEEEcCC
Q 021319           96 ARS-GKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKF-KPIHRRK-FGYEVNEIAWNMTG-EMFFLTTGN  170 (314)
Q Consensus        96 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~  170 (314)
                      .|. +.......+.+.+-.++|.|.. ..+++++.||.++-+|+|+. +++...+ +..++..+.+++.. ..+.+++.+
T Consensus       316 ~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d  395 (463)
T KOG0270|consen  316 CRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD  395 (463)
T ss_pred             ccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence            984 2334456677888889998865 45667889999999999987 7777654 56788888887765 456677889


Q ss_pred             ceEEEEeCCCCCceeee--eecccceEEEEECCCCC-EEEEeeCCCeEEEeeCCCcEE
Q 021319          171 GTVEVLTYPSLRPLDTV--VAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLC  225 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~-~l~t~~~dg~i~vwd~~~~~~  225 (314)
                      +.+.+|++....+....  ...-+...|.++.|+-. .+|.|+..+.+++||+.+...
T Consensus       396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            99999998765542211  11112356777787654 578899899999999977643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.84  E-value=7.6e-18  Score=135.62  Aligned_cols=234  Identities=17%  Similarity=0.263  Sum_probs=176.0

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEeCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT--VRLWDAR   97 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~--v~iwd~~   97 (314)
                      ...++...|+.+...|..|+.|| .++|..++...    ..........|-.+-|+.   .++|-.+.+..  +++.+.+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k----~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~K   76 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK----CFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFK   76 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHH----hhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcc
Confidence            44677788999998888899888 57887765321    101111122344555653   35555555544  8899998


Q ss_pred             CCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC--c--ceeeEEeccCCCeEEEE--cCCc
Q 021319           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--Y--EVNEIAWNMTGEMFFLT--TGNG  171 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~--~~~g  171 (314)
                      .+..+....+...++++.++.+  .|++.-. +.|.|+|++..+.++++...  .  .+..+..+..+.+++..  ...|
T Consensus        77 k~~~ICe~~fpt~IL~VrmNr~--RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G  153 (391)
T KOG2110|consen   77 KKTTICEIFFPTSILAVRMNRK--RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG  153 (391)
T ss_pred             cCceEEEEecCCceEEEEEccc--eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence            8877777777888888888755  4555444 34999999999999887643  2  23344444444455544  3579


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCe-EEEeeCCCcEEEEEeeecc--cCeEEEEEccCCcEE
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFTKLE--WPVRTISFSHTGDYI  248 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l  248 (314)
                      .+.+|+....++...+..|.+.+-|++|+++|.+|||++..|+ |||+.+.+++.+.+|....  ..|.+++|+|++++|
T Consensus       154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence            9999999999999999999999999999999999999999996 8999999999998887543  357899999999999


Q ss_pred             EEecCCceEEEEECCC
Q 021319          249 ASASEDLFIDISNVHT  264 (314)
Q Consensus       249 ~s~s~d~~v~v~~~~~  264 (314)
                      ++.|..++|+|+.+.+
T Consensus       234 ~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEK  249 (391)
T ss_pred             EEecCCCeEEEEEecc
Confidence            9999999999998754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=5.1e-19  Score=143.43  Aligned_cols=229  Identities=21%  Similarity=0.383  Sum_probs=167.8

Q ss_pred             eeeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCC---ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      ....||+++|..++|+|-. +.|||||.|.+|.||.+..+...   .-+..++.||...|.-+.|+|.-.++|+|++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            3467999999999999976 46999999999999998654322   1234578999999999999999899999999999


Q ss_pred             cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-c-CcceeeEEeccCCCeEEEE
Q 021319           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-F-GYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  167 (314)
                      +|.+||+.+|.....+.+...+.++.|+.+|.++++.+.|..|+|||.++.+.+.... + +....-+.|-.++..+-++
T Consensus       155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999877776666667899999999999999999999999999998876542 1 3334455677777744444


Q ss_pred             c---CCceEEEEeCCCCC-ceeeee-ecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcE----EEEEeeecccCeE
Q 021319          168 T---GNGTVEVLTYPSLR-PLDTVV-AHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEML----CVRTFTKLEWPVR  237 (314)
Q Consensus       168 ~---~~g~~~~~~~~~~~-~~~~~~-~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~  237 (314)
                      .   .+.++-+|+..... ++.... ..+.+|.---++++..++. +|-.|+.||.|.+....    .+.+|+- ..+-.
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S-~epQR  313 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS-KEPQR  313 (472)
T ss_pred             cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc-CCccc
Confidence            3   45777888765433 322221 1233444445688887765 45568999999986532    3344432 22445


Q ss_pred             EEEEcc
Q 021319          238 TISFSH  243 (314)
Q Consensus       238 ~~~~sp  243 (314)
                      .+.|.|
T Consensus       314 G~g~mP  319 (472)
T KOG0303|consen  314 GMGFMP  319 (472)
T ss_pred             cccccc
Confidence            555555

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.84  E-value=9.9e-18  Score=134.98  Aligned_cols=232  Identities=16%  Similarity=0.266  Sum_probs=170.8

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE-EecCceEEEEEccCCCEEEEEeCCCc--EEEEEccCCeEe
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDE--LTILDVRKFKPI  143 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~  143 (314)
                      ..+....|+.+ ..+|..|+.||. +++....-...... .....++.+-|+  ..++|..+.+..  ++++++++...+
T Consensus         6 ~ti~~~~~Nqd-~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    6 PTINFIGFNQD-STLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             cceeeeeeccc-eeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence            34556667755 456767777765 77766543221111 111123334454  446766665444  899999988888


Q ss_pred             eeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee---ecccceEEEEECCCCCEEEEee--CCCeEEEe
Q 021319          144 HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV---AHTAGCYCIAIDPMGRYFAVGS--ADSLVSLW  218 (314)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~t~~--~dg~i~vw  218 (314)
                      +.+..+.++-+|.++  -+.+++..++. +++|++...+.+.++.   .+..++.++++++.+.++|--+  ..|.|.+|
T Consensus        82 Ce~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   82 CEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             EEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            888877778777764  44555555544 9999999988887764   3455677777777777888443  35889999


Q ss_pred             eCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCce-EEEEECCCCCeEEEEecc---CccceeEEcCCCCeeEEEec
Q 021319          219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIPCR---AAMNSVEWNPKYNLLAYAGD  294 (314)
Q Consensus       219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~-v~v~~~~~~~~~~~~~~~---~~i~~v~~~~~~~~la~~~~  294 (314)
                      |..+.+.+..+..|+.++-+++|+|+|.+|||||+-|+ |+|+.+.+|.++.++.-+   ..|.+++|+|+..+|+..|.
T Consensus       159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence            99999999999999999999999999999999999987 699999999999998642   36899999999999988774


Q ss_pred             CCcccccccceEEeccccC
Q 021319          295 DKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       295 d~~~~~~~~~~~~~~~~~~  313 (314)
                      -        +|+-||-+++
T Consensus       239 T--------eTVHiFKL~~  249 (391)
T KOG2110|consen  239 T--------ETVHIFKLEK  249 (391)
T ss_pred             C--------CeEEEEEecc
Confidence            4        6888887754

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=2.5e-18  Score=139.80  Aligned_cols=287  Identities=16%  Similarity=0.244  Sum_probs=191.1

Q ss_pred             cccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCc----ee-eEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGK----VK-DIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        20 ~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~----~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      ..+|.++.|.+.+. .|+|||.|..||||.++......    +. .-.+..|..+|+++.|+|. +++++||+.+|.|.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEE
Confidence            45899999998876 99999999999999986533221    11 1246789999999999997 479999999999999


Q ss_pred             EeCC--------C-----C-ceeeeEE---ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeE
Q 021319           94 WDAR--------S-----G-KCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEI  155 (314)
Q Consensus        94 wd~~--------~-----~-~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~  155 (314)
                      |-..        +     . .......   +..++..++|+|++.++++++.|..+.+||+..++..... .+..-+..+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            9654        1     0 0111111   2245567899999999999999999999999998876553 445567788


Q ss_pred             EeccCCCeEEEEcCCceEEEEeCCCCCceee-----e---ee-----------ccc----ceEEEEECCCCCEEEEeeC-
Q 021319          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT-----V---VA-----------HTA----GCYCIAIDPMGRYFAVGSA-  211 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~---~~-----------~~~----~i~~i~~~~~~~~l~t~~~-  211 (314)
                      +|.|...+++.-+.+...+.+.....+.+..     +   ..           |..    --..++|+|+|..+++.+. 
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~  251 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL  251 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence            9998888877776666444444321111000     0   00           111    1235688999999887642 


Q ss_pred             ---CCe-----EEEeeCCCcE-EEEEeeecccCeEEEEEcc------------------CCcEEEEecCCceEEEEECCC
Q 021319          212 ---DSL-----VSLWDISEML-CVRTFTKLEWPVRTISFSH------------------TGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       212 ---dg~-----i~vwd~~~~~-~~~~~~~~~~~v~~~~~sp------------------~~~~l~s~s~d~~v~v~~~~~  264 (314)
                         .+.     ..+|+-...+ ....+....-++..+.|+|                  -.-.+|.|+.+ .|.+||..+
T Consensus       252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~  330 (434)
T KOG1009|consen  252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQT  330 (434)
T ss_pred             eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEecccc
Confidence               122     2333322111 1122222333444455544                  23446666666 499999999


Q ss_pred             CCeEEEEe--ccCccceeEEcCCCCeeEEEecCCc--ccccccceEEe
Q 021319          265 GRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKN--KYQADEGVFRI  308 (314)
Q Consensus       265 ~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d~~--~~~~~~~~~~~  308 (314)
                      ..++....  |-.+|+.++|+++|..|+..|.|+-  ..++|..|+.|
T Consensus       331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg~  378 (434)
T KOG1009|consen  331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELGI  378 (434)
T ss_pred             ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhccc
Confidence            88876654  3568999999999999999999873  33455555543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.2e-18  Score=156.74  Aligned_cols=283  Identities=18%  Similarity=0.262  Sum_probs=197.3

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeec---CCCCEEEEEEc-CCCCCEEEEEeCCCcEE
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWD-PKHADLIATASGDKTVR   92 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~---h~~~v~~l~~~-~~~~~~l~s~~~D~~v~   92 (314)
                      ++....-..+.|+|=..++++++..-.|+|||.+....   . ..+..   ....|.++.+. ..+..++++|+.||.||
T Consensus      1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~---l-~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL---L-NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred             hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCce---e-ccccCCCCCCCccceeeeecccchhheeeeccCceEE
Confidence            34444567788999889999999888999999865321   1 11111   22347777764 33456889999999999


Q ss_pred             EEeCC-CC----ceeeeE-Ee-------cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc--eeeEEe
Q 021319           93 LWDAR-SG----KCSQQA-EL-------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--VNEIAW  157 (314)
Q Consensus        93 iwd~~-~~----~~~~~~-~~-------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~  157 (314)
                      ||+-- .+    +.+... .+       .+...-+.|.....+|++++.-..|+|||..+.+....+..+..  +..+.-
T Consensus      1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred             EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence            99632 21    111100 11       11223366777777888887788999999998877766554433  233222


Q ss_pred             -ccCCCeEEEEcCCceEEEEeCCCC---Cceeeeeecccc--eEEEEECCCCCE-EEEeeCCCeEEEeeCCCcEEEEEe-
Q 021319          158 -NMTGEMFFLTTGNGTVEVLTYPSL---RPLDTVVAHTAG--CYCIAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTF-  229 (314)
Q Consensus       158 -~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~--i~~i~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~-  229 (314)
                       ...|+.+++|..||.+++||.+..   ..+.....|...  |..+.+.+.|-. |++|+.||.|++||++.......+ 
T Consensus      1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred             cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence             234789999999999999997532   245556677766  999999987755 999999999999999864222111 


Q ss_pred             -eec---ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec--------cCccceeEEcCCCCeeEEEecCCc
Q 021319          230 -TKL---EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--------RAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       230 -~~~---~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~--------~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                       ..+   ....+++..++....+|+|+. ..|.||++. |+.+..+..        .+++.+++|||...+||.|+.|  
T Consensus      1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D-- 1372 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD-- 1372 (1387)
T ss_pred             eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCC--
Confidence             111   225889999999999999999 999999985 344433321        3578999999999999988766  


Q ss_pred             ccccccceEEeccccC
Q 021319          298 KYQADEGVFRIYGFEN  313 (314)
Q Consensus       298 ~~~~~~~~~~~~~~~~  313 (314)
                            .++.||+-++
T Consensus      1373 ------s~V~iYs~~k 1382 (1387)
T KOG1517|consen 1373 ------STVSIYSCEK 1382 (1387)
T ss_pred             ------ceEEEeecCC
Confidence                  5899998765

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.83  E-value=3.3e-17  Score=129.57  Aligned_cols=270  Identities=15%  Similarity=0.270  Sum_probs=183.6

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEE-EEeCC------CcEEEE
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIA-TASGD------KTVRLW   94 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~~~D------~~v~iw   94 (314)
                      ...+++|+.|...++.|..+| .|||++++............|  -.+..+-|   ..++++ .||..      ..|.||
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G--~~~veMLf---R~N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG--FKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCc--hhhhhHhh---hhceEEEecCCCCCCCCCceEEEE
Confidence            345599999999988887665 899999864321111111111  11222222   123443 33333      578999


Q ss_pred             eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEcc-CCeEeeeeccC---cceeeEEeccCCCeEEEE-cC
Q 021319           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRRKFG---YEVNEIAWNMTGEMFFLT-TG  169 (314)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~  169 (314)
                      |-...+++.++.+..++.++.+.++.  +++. ..+.|.+|... +.+.++.++.-   ....++.-+.....++.. ..
T Consensus        81 DD~k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k  157 (346)
T KOG2111|consen   81 DDLKERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK  157 (346)
T ss_pred             ecccCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence            97778888888899999999988773  4333 34689999876 55655554432   223333333333344433 34


Q ss_pred             CceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCCCe-EEEeeCCCcEEEEEeeec--ccCeEEEEEccC
Q 021319          170 NGTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFTKL--EWPVRTISFSHT  244 (314)
Q Consensus       170 ~g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~--~~~v~~~~~sp~  244 (314)
                      -|.+.+.++...++  -..+..|...|.|++++.+|.++||++..|+ |||||..++..++++...  ...+.+++|||+
T Consensus       158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~  237 (346)
T KOG2111|consen  158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN  237 (346)
T ss_pred             cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence            59999999866554  3567899999999999999999999999996 999999999999888653  457999999999


Q ss_pred             CcEEEEecCCceEEEEECCCCC---e-------EE-EE-------------e-ccCccceeEEcCCCCeeEEEecCCccc
Q 021319          245 GDYIASASEDLFIDISNVHTGR---T-------VH-QI-------------P-CRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~~~~---~-------~~-~~-------------~-~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      ..+||.+|.-|+++|+.++...   .       .+ .+             . ..++..-++|-.+.+.++..+.|+..|
T Consensus       238 ~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~  317 (346)
T KOG2111|consen  238 SSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYY  317 (346)
T ss_pred             ccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence            9999999999999999876422   1       00 01             0 123455678887756666677777766


Q ss_pred             c
Q 021319          300 Q  300 (314)
Q Consensus       300 ~  300 (314)
                      .
T Consensus       318 k  318 (346)
T KOG2111|consen  318 K  318 (346)
T ss_pred             E
Confidence            4

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=1.9e-18  Score=140.52  Aligned_cols=253  Identities=19%  Similarity=0.309  Sum_probs=174.9

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCC------C------CCCceeeEEeecCCCCEEEEEEcCCCC
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP------H------GHGKVKDIELRGHADSVDQLCWDPKHA   79 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~------~------~~~~~~~~~~~~h~~~v~~l~~~~~~~   79 (314)
                      +.-.|.+|..+|++|.|+|+|+.|+||+.+|.|.+|....      .      ...+.....+.+|...|..++|+|++ 
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-  135 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-  135 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-
Confidence            4456789999999999999999999999999999997651      0      11234455688999999999999975 


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-----------
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----------  147 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----------  147 (314)
                      .++++++.|.++++||+..|........+... .-++|.|-++++++-+.|.....+++...+.++...           
T Consensus       136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~  215 (434)
T KOG1009|consen  136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE  215 (434)
T ss_pred             ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence            68999999999999999999887776544443 358899999999988888766666654433322211           


Q ss_pred             ---------cC----cceeeEEeccCCCeEEEEcC----Cce-----EEEEeCCC-CCceeeeeecccceEEEEE-----
Q 021319          148 ---------FG----YEVNEIAWNMTGEMFFLTTG----NGT-----VEVLTYPS-LRPLDTVVAHTAGCYCIAI-----  199 (314)
Q Consensus       148 ---------~~----~~~~~~~~~~~~~~~~~~~~----~g~-----~~~~~~~~-~~~~~~~~~~~~~i~~i~~-----  199 (314)
                               +.    .-..-+.|+|+|..++....    .+.     .++++-.. .+|...+.+-......+.+     
T Consensus       216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~  295 (434)
T KOG1009|consen  216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYY  295 (434)
T ss_pred             CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEE
Confidence                     00    01234678899988876543    222     23333221 1233222222222222222     


Q ss_pred             -------------CCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-cccCeEEEEEccCCcEEEEecCCceEEEEECCCC
Q 021319          200 -------------DPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  265 (314)
Q Consensus       200 -------------~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~  265 (314)
                                   -|.+..+|.++.+ .|.+||..+...+....+ |=.+++.++|+++|.+|+..|.||.+.+-..+..
T Consensus       296 elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  296 ELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             EeccccccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence                         2445567777665 599999987655544433 3457999999999999999999999888877654


Q ss_pred             C
Q 021319          266 R  266 (314)
Q Consensus       266 ~  266 (314)
                      +
T Consensus       375 e  375 (434)
T KOG1009|consen  375 E  375 (434)
T ss_pred             h
Confidence            4

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.83  E-value=5.8e-19  Score=151.95  Aligned_cols=240  Identities=20%  Similarity=0.321  Sum_probs=180.7

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+.||++.|+||+|+.||++++||+.|+.|.+|...-.+   +.  ++ .|.+.|.|+.|+|-. ..++|++-. ..
T Consensus        45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~L--kY-SH~D~IQCMsFNP~~-h~LasCsLs-dF  116 (1081)
T KOG1538|consen   45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---IL--KY-SHNDAIQCMSFNPIT-HQLASCSLS-DF  116 (1081)
T ss_pred             cccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---ee--ee-ccCCeeeEeecCchH-HHhhhcchh-hc
Confidence            456789999999999999999999999999999999754321   11  22 599999999999974 577777653 45


Q ss_pred             EEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec----cCcceeeEEeccCC-----C
Q 021319           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK----FGYEVNEIAWNMTG-----E  162 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~-----~  162 (314)
                      -+|......+ ..........+++|..||.+++.|..+|+|.+-+-. .++...++    ...++.+++|+|..     +
T Consensus       117 glWS~~qK~V-~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~d  194 (1081)
T KOG1538|consen  117 GLWSPEQKSV-SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRND  194 (1081)
T ss_pred             cccChhhhhH-HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccc
Confidence            6787654432 222334566789999999999999999999997632 22222222    23578899998863     4


Q ss_pred             eEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS  242 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  242 (314)
                      .+++..-+.++.++.+... .+..-..-+-.+.|+..-++|.++..|+.|+.+++|- +++-.+.++...+.-|..++..
T Consensus       195 i~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~  272 (1081)
T KOG1538|consen  195 ILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAK  272 (1081)
T ss_pred             eEEEEeccceeEEEEecce-eecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEc
Confidence            5666666777777766432 1111112233567999999999999999999999997 5676777776677789999999


Q ss_pred             cCCcEEEEecCCceEEEEECC
Q 021319          243 HTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       243 p~~~~l~s~s~d~~v~v~~~~  263 (314)
                      |++++++.|-.||++-.++..
T Consensus       273 PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  273 PNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cCCceEEEEEccCeeehhhhH
Confidence            999999999999999888764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=6.1e-19  Score=144.12  Aligned_cols=198  Identities=21%  Similarity=0.340  Sum_probs=142.9

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceee
Q 021319           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (314)
Q Consensus        24 ~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~  103 (314)
                      .+++|+++|..+++++.||++|||+...-    ........|...|.+|.|+|++ .+|++-+.| ..+||+.+++.++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----LTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc----hhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhh
Confidence            68999999999999999999999996431    2234566899999999999985 699999999 99999999997665


Q ss_pred             eEEecCc---eEEEEEccCC---CEEE--EEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEE
Q 021319          104 QAELSGE---NINITYKPDG---THIA--VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV  175 (314)
Q Consensus       104 ~~~~~~~---~~~~~~~~~~---~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  175 (314)
                      .....+.   ...|.|..|+   .+.+  .-...+.+..+|+.                                    +
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~------------------------------------~  265 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS------------------------------------L  265 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee------------------------------------e
Confidence            5432222   2246666554   2111  11222223333321                                    1


Q ss_pred             EeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-ecccCeEEEEEccCCcEEEEecCC
Q 021319          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYIASASED  254 (314)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~d  254 (314)
                      |+....-+..+...-...|++++++++|+++|.|+.||.|.+++..++++++-.+ .|...|+.+.|+|+.+++++.|.|
T Consensus       266 w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~  345 (398)
T KOG0771|consen  266 WSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD  345 (398)
T ss_pred             eccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccC
Confidence            2211111111222223469999999999999999999999999999998887664 477789999999999999999999


Q ss_pred             ceEEEEECC
Q 021319          255 LFIDISNVH  263 (314)
Q Consensus       255 ~~v~v~~~~  263 (314)
                      ....|..+.
T Consensus       346 ~~~~v~~l~  354 (398)
T KOG0771|consen  346 NEAAVTKLA  354 (398)
T ss_pred             CceeEEEEe
Confidence            888887654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=5.6e-19  Score=149.09  Aligned_cols=248  Identities=12%  Similarity=0.179  Sum_probs=173.9

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCC---CC-CCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP---HG-HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~---~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ++..|.+.|+.++|.|....|++|+.|+++++|+++.   .. ....+.+.+.+|.++|.|+++.++ ++.+.+|+-||+
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGT  367 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCce
Confidence            6778999999999999999999999999999999932   11 112345678999999999999876 578999999999


Q ss_pred             EEEEeCCCCc----------eeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE--eee-eccCcceeeEE
Q 021319           91 VRLWDARSGK----------CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHR-RKFGYEVNEIA  156 (314)
Q Consensus        91 v~iwd~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~-~~~~~~~~~~~  156 (314)
                      |+.|++....          ....+ ........+++++....|++++.||+++.|+.....+  ... .+.+.+ ..+.
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P-lsvd  446 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP-LSVD  446 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc-ceEe
Confidence            9999654211          01111 1233444688888888899999999999999876655  111 111211 1222


Q ss_pred             eccCC-CeEEEEcCCceEEEEeCCCCCceeeeee-------cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE
Q 021319          157 WNMTG-EMFFLTTGNGTVEVLTYPSLRPLDTVVA-------HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (314)
Q Consensus       157 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~  228 (314)
                      +.... ...++....+.-.+++......+..+..       -...+.-+..+|++...+++-.|+.|+++|..+++.+..
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s  526 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS  526 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence            21111 1111111112222222222222221111       112356778899999999999999999999999999998


Q ss_pred             eeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          229 FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       229 ~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      ...|...++++++.|+|.+|++++.|+.+++|....
T Consensus       527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             eeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence            889999999999999999999999999999998744

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.7e-17  Score=145.69  Aligned_cols=285  Identities=16%  Similarity=0.207  Sum_probs=204.1

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      .|.-.++++++||.++++++|..||.|.+|.--.-.........+.=|.++|.+++|++++ .+|+||+.++-+-+|-..
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeec
Confidence            4666799999999999999999999999995321011222334566789999999999986 588899999999999999


Q ss_pred             CCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee---eccC---------cceeeEEeccCCCeEE
Q 021319           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR---RKFG---------YEVNEIAWNMTGEMFF  165 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~~  165 (314)
                      +++......+.+.+..+.++||+...++...|..|.+..+.+......   ++..         .-...+..+|.-+.++
T Consensus       282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            988666666788888999999999999999999999987644322111   1111         1234566778778888


Q ss_pred             EEcCCceEEEEeCCCCCceeeeee-----------cccceEEEEECCCCCEEEEeeC--------C--CeEEEeeCCCc-
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVA-----------HTAGCYCIAIDPMGRYFAVGSA--------D--SLVSLWDISEM-  223 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~i~~i~~~~~~~~l~t~~~--------d--g~i~vwd~~~~-  223 (314)
                      ..+..|.+.+|++.+.+.+..+..           +.-.+++++.+-.|.+++|...        |  -.+++|..... 
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~  441 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS  441 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence            889999999999876654444321           2224677778888999998732        3  25888976533 


Q ss_pred             --EEEEE--eeecccCeEEEEEc-cCCc-EEEEecCCceEEEEECCCC------------CeEEEEeccCccceeEEcCC
Q 021319          224 --LCVRT--FTKLEWPVRTISFS-HTGD-YIASASEDLFIDISNVHTG------------RTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       224 --~~~~~--~~~~~~~v~~~~~s-p~~~-~l~s~s~d~~v~v~~~~~~------------~~~~~~~~~~~i~~v~~~~~  285 (314)
                        ..+.+  ...|+..+...+|. |... ..+|+|.||.+++|-...-            +.+..+ ++.++++.+|+.|
T Consensus       442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~a~~fs~d  520 (792)
T KOG1963|consen  442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPITALCFSQD  520 (792)
T ss_pred             ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcccchhhcCC
Confidence              22222  23466555555554 3333 8999999999999987221            112222 3668999999999


Q ss_pred             CCeeEEEecCCcccccccceEEeccccC
Q 021319          286 YNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       286 ~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |.+||.+=+         +++.|||..+
T Consensus       521 Gslla~s~~---------~~Itiwd~~~  539 (792)
T KOG1963|consen  521 GSLLAVSFD---------DTITIWDYDT  539 (792)
T ss_pred             CcEEEEecC---------CEEEEecCCC
Confidence            988875553         4899999854

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=6.6e-17  Score=137.96  Aligned_cols=261  Identities=16%  Similarity=0.142  Sum_probs=167.2

Q ss_pred             ccccEEEEEECCCCCEEEEee-CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           19 HKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~-~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      +.+....++++|++++|+.++ .++.|.+|+++..  +................++++|++..++++.-.++.|.+|++.
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~--g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~  110 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD--GALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLD  110 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC--CceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence            345677899999999886654 5889999998632  1221111111233456799999865444444458999999986


Q ss_pred             C-Cce---eeeEEecCceEEEEEccCCCEEEEE-eCCCcEEEEEccCCeEee-------eeccCcceeeEEeccCCCeEE
Q 021319           98 S-GKC---SQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIH-------RRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        98 ~-~~~---~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      . +..   ............++++|++++++++ ..++.|.+||+.+...+.       ....+.....++|+|+++.++
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly  190 (330)
T PRK11028        111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY  190 (330)
T ss_pred             CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence            3 322   1211122334567899999988655 456899999997632221       122344567889999999988


Q ss_pred             EEcC-CceEEEEeCCCC----Cceeeeeec------ccceEEEEECCCCCEEEEeeC-CCeEEEeeCCCcE----EEEEe
Q 021319          166 LTTG-NGTVEVLTYPSL----RPLDTVVAH------TAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEML----CVRTF  229 (314)
Q Consensus       166 ~~~~-~g~~~~~~~~~~----~~~~~~~~~------~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~~~----~~~~~  229 (314)
                      +... ++.+.+|++...    +.+..+..+      ......+.++|++++++++.. ++.|.+|++....    .+...
T Consensus       191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~  270 (330)
T PRK11028        191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ  270 (330)
T ss_pred             EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence            8776 899999998632    222222211      112346889999999988865 6899999985321    22222


Q ss_pred             eecccCeEEEEEccCCcEEEEecC-CceEEEEECC--CCCe--EEEEeccCccceeEE
Q 021319          230 TKLEWPVRTISFSHTGDYIASASE-DLFIDISNVH--TGRT--VHQIPCRAAMNSVEW  282 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~-d~~v~v~~~~--~~~~--~~~~~~~~~i~~v~~  282 (314)
                      .. ......++|+|+|++|+++.. ++.|.+|+..  ++..  +..+......++++|
T Consensus       271 ~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        271 PT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             ec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence            22 223567899999999998875 8899999874  4432  222333334455554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=5.5e-19  Score=149.13  Aligned_cols=219  Identities=24%  Similarity=0.354  Sum_probs=158.7

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCC------CceeeEEeecCCCCEEEEEEcCCCCCEEEEEe
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH------GKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~   86 (314)
                      +-++.+|.++|.|++..+.++.+.|||.||+||.|++.....      ..+..-.+.||.+.|..+++++.. +.|++++
T Consensus       337 i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs  415 (577)
T KOG0642|consen  337 ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCS  415 (577)
T ss_pred             eEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeec
Confidence            356789999999999999999999999999999997752111      112334678999999999999874 5788999


Q ss_pred             CCCcEEEEeCCCCcee--eeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeec--------cCcceeeE
Q 021319           87 GDKTVRLWDARSGKCS--QQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK--------FGYEVNEI  155 (314)
Q Consensus        87 ~D~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~~~  155 (314)
                      .||++|.|+.......  ....-.+-...+.+.... ...++...-+.-.+.++.....+....        ....+..+
T Consensus       416 ~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v  495 (577)
T KOG0642|consen  416 SDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV  495 (577)
T ss_pred             CCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence            9999999998665441  111112223344433222 122222222222333333222221111        11346778


Q ss_pred             EeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec
Q 021319          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~  232 (314)
                      .++|.....+.+.+++.+++++.....++.....|...++++++.|+|-+|++++.|+.+++|.+....|++....|
T Consensus       496 Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  496 VSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             EecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999877777665444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=1e-17  Score=147.48  Aligned_cols=235  Identities=19%  Similarity=0.255  Sum_probs=159.6

Q ss_pred             CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC---CcEEEEeCCCCceeeeEEecCceEEEEEc
Q 021319           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYK  117 (314)
Q Consensus        41 D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  117 (314)
                      +..|.+||.+...   .  ..+..|...+....|+|++ +.|+..+.+   ..|.+||+.+++........+.....+|+
T Consensus       183 ~~~i~i~d~dg~~---~--~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDGFN---Q--FIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS  256 (429)
T ss_pred             eEEEEEECCCCCC---c--eEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence            5789999876422   1  2356788889999999986 456655543   47999999887654433344444568999


Q ss_pred             cCCCEEEEEe-CCCcEEEE--EccCCeEeeeeccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCCCCceeeeeecccc
Q 021319          118 PDGTHIAVGN-RDDELTIL--DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLDTVVAHTAG  193 (314)
Q Consensus       118 ~~~~~l~~~~-~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~  193 (314)
                      |||+.|+.+. .++...+|  |+...+...-...........|+|+++.+++.. .+|...+|.+...........+.. 
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-  335 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-  335 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence            9999988764 57766555  555444322222334567889999999776554 567777776543211112223332 


Q ss_pred             eEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC--CCCCeEEEE
Q 021319          194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV--HTGRTVHQI  271 (314)
Q Consensus       194 i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~--~~~~~~~~~  271 (314)
                       +..+|+|+|+.++..+.++ +.+||+.++........  ......+|+|+|++|+.++.++...+|.+  .+|+.++.+
T Consensus       336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence             4678999999998887766 55699987765432222  23356789999999999999998888875  367777777


Q ss_pred             ec-cCccceeEEcCCC
Q 021319          272 PC-RAAMNSVEWNPKY  286 (314)
Q Consensus       272 ~~-~~~i~~v~~~~~~  286 (314)
                      .. .+.+...+|||-.
T Consensus       412 ~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        412 PGSDGQVKFPAWSPYL  427 (429)
T ss_pred             cCCCCCCCCcccCCCC
Confidence            53 5678999999853

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.81  E-value=1.2e-19  Score=159.52  Aligned_cols=271  Identities=18%  Similarity=0.272  Sum_probs=197.5

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ++.+.||.++|+|+.|...|.++++|+.|..|+||.+++..    .-..++||++.|+.++.+.. +.+++++|.|.-|+
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~----~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR----CLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh----hhccCCCCccccchhccchh-hhhhhhcccCceEE
Confidence            46678999999999999999999999999999999976532    23357899999999998764 56889999999999


Q ss_pred             EEeCCCCceeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee------eccCcceeeEEeccCCCeEE
Q 021319           93 LWDARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR------RKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        93 iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  165 (314)
                      +|-+..+..+..+ ...+.+.+++|+|-.    +.+.||++.+||.+ ..++..      ...+.-+..+.+...+..++
T Consensus       258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~  332 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFL  332 (1113)
T ss_pred             EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccc
Confidence            9999988765443 346677889999864    77889999999987 111110      01112234445555666677


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  244 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~  244 (314)
                      ++..++....|......      .+.....-+..+.+ ..+.+++=.+-.+.+|++.+++.++.+.+|...+..+.++|-
T Consensus       333 Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF  406 (1113)
T ss_pred             cccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence            77777766555443211      11111100111111 135556666778999999999888888899999999999998


Q ss_pred             CcEEE-EecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCccc
Q 021319          245 GDYIA-SASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       245 ~~~l~-s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      +..++ +++.||...|||...|.+++.+. .+..+..-+||++|..++...+-+-+|
T Consensus       407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~  463 (1113)
T KOG0644|consen  407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLY  463 (1113)
T ss_pred             CcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceE
Confidence            76554 89999999999999998887653 356788889999999988666554444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=8.9e-19  Score=145.56  Aligned_cols=286  Identities=22%  Similarity=0.269  Sum_probs=210.8

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC-CEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~D~~v~   92 (314)
                      ..|.+|.+-|+.|.|+..|..|+|||.|..|.+||.....  .... -..||...|....|.|..+ .-+++++.||.++
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~-f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLS-FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccc-cccccccchhhhhccCCCCCcCceeccccCcee
Confidence            4578999999999999999999999999999999986532  1111 2358999999999988643 4578999999999


Q ss_pred             EEeCC-CCcee---eeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeee----eccC---cceeeEEeccC
Q 021319           93 LWDAR-SGKCS---QQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHR----RKFG---YEVNEIAWNMT  160 (314)
Q Consensus        93 iwd~~-~~~~~---~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~---~~~~~~~~~~~  160 (314)
                      +=.+. ++.+.   ....+.+.+-.++..|+. ..+.+++.|+.+.-+|++...+-..    ....   .....++..|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            87653 33333   223445666677777765 4567888999999999987544221    1111   24567777887


Q ss_pred             CC-eEEEEcCCceEEEEeCCCCCc------eeeee------ecccceEEEEECCCCCEEEEeeCCCeEEEeeCC--Cc--
Q 021319          161 GE-MFFLTTGNGTVEVLTYPSLRP------LDTVV------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS--EM--  223 (314)
Q Consensus       161 ~~-~~~~~~~~g~~~~~~~~~~~~------~~~~~------~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~--~~--  223 (314)
                      .. .+++++.+..+++|+.+....      +..+-      .....|+|++++.++.-+.++-.|-.|.++.-.  .+  
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            65 788888999999998754321      22221      223468999999888877778888889999532  22  


Q ss_pred             --------EEEEE-eeeccc--CeEEEEE-ccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeE
Q 021319          224 --------LCVRT-FTKLEW--PVRTISF-SHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLA  290 (314)
Q Consensus       224 --------~~~~~-~~~~~~--~v~~~~~-sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la  290 (314)
                              ..++. +++|..  .|..+-| -|...|++|||.-|.|++|+-++++.++.+.. +.-|||+.=||..+.||
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA  452 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA  452 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence                    22333 677753  4666665 48999999999999999999999998877654 33799999999999999


Q ss_pred             EEecCCcccccccceEEecc
Q 021319          291 YAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       291 ~~~~d~~~~~~~~~~~~~~~  310 (314)
                      +.|-|..        ||||-
T Consensus       453 sSGid~D--------VKIWT  464 (559)
T KOG1334|consen  453 SSGIDHD--------VKIWT  464 (559)
T ss_pred             ccCCccc--------eeeec
Confidence            9999864        77774

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=3.9e-17  Score=143.78  Aligned_cols=259  Identities=19%  Similarity=0.265  Sum_probs=183.5

Q ss_pred             CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee-------eeEEecCceEEE
Q 021319           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS-------QQAELSGENINI  114 (314)
Q Consensus        42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-------~~~~~~~~~~~~  114 (314)
                      +.+.||++....   .+...+ .....|.++.|+|.++++++.|..+|.|-+||++.+...       ....+......+
T Consensus       222 ~~~~vW~~~~p~---~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  222 GVLLVWSLKNPN---TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             ceEEEEecCCCC---CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            468899987542   223333 346779999999999999999999999999999876541       112233445566


Q ss_pred             EEccC--CCEEEEEeCCCcEEEEEccCCeE-eee-----e-------ccCcceeeEEeccCC-CeEEEEcCCceEEEEeC
Q 021319          115 TYKPD--GTHIAVGNRDDELTILDVRKFKP-IHR-----R-------KFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTY  178 (314)
Q Consensus       115 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~-~~~-----~-------~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~  178 (314)
                      .|..+  +.-+++++.||.|..|+++.... ...     .       .....+..++|.+.. ..|++|++.|.+.....
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r  377 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR  377 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence            66543  34588888999999999876432 111     1       112345677787654 67889999999988544


Q ss_pred             CCCC--------ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC-CcEEEEEeeecccCeEEEEEccCC-cEE
Q 021319          179 PSLR--------PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWPVRTISFSHTG-DYI  248 (314)
Q Consensus       179 ~~~~--------~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~sp~~-~~l  248 (314)
                      ...+        +...+..|.+.++++.++|-+..++..+.|.++++|... ....+..+......|.+++|||.- ..+
T Consensus       378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF  457 (555)
T KOG1587|consen  378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF  457 (555)
T ss_pred             cCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence            3322        233556788999999999977665555559999999987 555555555555569999999976 567


Q ss_pred             EEecCCceEEEEECCC--CCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          249 ASASEDLFIDISNVHT--GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       249 ~s~s~d~~v~v~~~~~--~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      |++..||.+.+||+..  .++....+ +....+.+.|++.+++||.|...        |.+.+|.+.
T Consensus       458 ~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~--------G~~~~~~l~  516 (555)
T KOG1587|consen  458 ATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN--------GTTHILKLS  516 (555)
T ss_pred             EEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC--------CcEEEEEcC
Confidence            7888899999999864  34443332 24457788999999999988855        677788774

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=3.3e-17  Score=144.21  Aligned_cols=246  Identities=16%  Similarity=0.193  Sum_probs=179.6

Q ss_pred             ccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCC--CceeeEEeecCCCCEEEEEEcCCCC-CEEEEEeCCCcEEEE
Q 021319           19 HKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGH--GKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTVRLW   94 (314)
Q Consensus        19 H~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~--~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~D~~v~iw   94 (314)
                      -...|.+++|+|.. ++++.|.++|.|-+||+..+..  ..........|..++.++.|..+.. .-++|++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            36789999999975 5677778999999999976543  1223334567999999999975432 347899999999999


Q ss_pred             eCCCCceeee------E-------EecCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeE--------e-eeeccCcc
Q 021319           95 DARSGKCSQQ------A-------ELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKP--------I-HRRKFGYE  151 (314)
Q Consensus        95 d~~~~~~~~~------~-------~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~--------~-~~~~~~~~  151 (314)
                      +++.-.....      .       .......++.|.+ +...+++|+..|.|.--+-...++        + ....+...
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            8764332110      0       1112334577766 456788899888876633222111        1 11234567


Q ss_pred             eeeEEeccCCCeEEEEcCCceEEEEeCC-CCCceeeeeecccceEEEEECCCCC-EEEEeeCCCeEEEeeCCCcE--EEE
Q 021319          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEML--CVR  227 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~-~l~t~~~dg~i~vwd~~~~~--~~~  227 (314)
                      +..+.++|-+..++.++.|-++++|... ...|+..+..+...+++++|||... .||++..||.+.+||+....  .+.
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~  480 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL  480 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence            8999999999888888889999999987 6778877777777899999999874 68889999999999996432  233


Q ss_pred             EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       228 ~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      +.+........+.|++.|+.|+.|...|.++++++..
T Consensus       481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            3333345567788999999999999999999999854

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.79  E-value=4.8e-18  Score=145.43  Aligned_cols=258  Identities=18%  Similarity=0.268  Sum_probs=163.5

Q ss_pred             EEECCC---CCEEEEeeCCCcEEEeecCCCCCC--ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319           26 VAWNCT---GTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (314)
Q Consensus        26 v~~s~~---g~~l~s~~~D~~v~iw~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~  100 (314)
                      +.|++-   .+.|+.+..||.|.++|.......  +........|.++|.++.|.| +...|++++.|.+++.||+..++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccce
Confidence            556543   356888999999999998643211  111234568999999999999 56789999999999999999888


Q ss_pred             eeee---EEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319          101 CSQQ---AELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL  176 (314)
Q Consensus       101 ~~~~---~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  176 (314)
                      +...   +.+....-+++|.|.. ..+++|+.|+.+.|||++....-...+..   +.         + .+..++. . -
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~---~~---------~-~~~~n~~-p-t  198 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD---NR---------I-YGRHNTA-P-T  198 (720)
T ss_pred             eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh---hh---------h-hccccCC-C-C
Confidence            7654   2233445568888755 46678999999999999864311100000   00         0 0000000 0 0


Q ss_pred             eC-CCCCceeeeeecccceEE---EEECCCCCEEEEeeC-CCeEEEeeCCCcEEEEE--------eeec---ccCeEEEE
Q 021319          177 TY-PSLRPLDTVVAHTAGCYC---IAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRT--------FTKL---EWPVRTIS  240 (314)
Q Consensus       177 ~~-~~~~~~~~~~~~~~~i~~---i~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~--------~~~~---~~~v~~~~  240 (314)
                      .. +..+.......+...|..   +.+..|...||+++. |+.|+|||+++..+...        +..+   ...+.++.
T Consensus       199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~  278 (720)
T KOG0321|consen  199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI  278 (720)
T ss_pred             CCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence            00 000111122234444444   555678889998888 99999999987654322        1112   22466777


Q ss_pred             EccCCcEEEEecCCceEEEEECCCCC--eEEEEec--cCccc-eeEEcCCCCeeEEEecCCccc
Q 021319          241 FSHTGDYIASASEDLFIDISNVHTGR--TVHQIPC--RAAMN-SVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       241 ~sp~~~~l~s~s~d~~v~v~~~~~~~--~~~~~~~--~~~i~-~v~~~~~~~~la~~~~d~~~~  299 (314)
                      ....|.+|+..-.|+.|+.|++..-.  ++..+.+  ..+.+ .=..+|++.+|++|+.|..-|
T Consensus       279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ay  342 (720)
T KOG0321|consen  279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAY  342 (720)
T ss_pred             ecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCccee
Confidence            77778888877779999999987532  2222221  11111 235679999999999998777

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=4e-17  Score=127.59  Aligned_cols=261  Identities=15%  Similarity=0.257  Sum_probs=186.1

Q ss_pred             EEEEee----CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC-------CcEEEEeCCCCc--
Q 021319           34 KLASGS----VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-------KTVRLWDARSGK--  100 (314)
Q Consensus        34 ~l~s~~----~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D-------~~v~iwd~~~~~--  100 (314)
                      .|++|-    .|+.|.+-+++... +.+....+..|.+.|..++-+|.+..+|+++-.|       -.+-||.+....  
T Consensus        28 cFlvgTnslK~dNqVhll~~d~e~-s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~  106 (370)
T KOG1007|consen   28 CFLVGTNSLKEDNQVHLLRLDSEG-SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ  106 (370)
T ss_pred             EEEEeccccCCcceeEEEEecCcc-chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc
Confidence            455553    47888888887644 3445556777889999999999988888887663       235689875332  


Q ss_pred             -------eeeeEE--ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe-eeecc------CcceeeEEeccCC-Ce
Q 021319          101 -------CSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HRRKF------GYEVNEIAWNMTG-EM  163 (314)
Q Consensus       101 -------~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~------~~~~~~~~~~~~~-~~  163 (314)
                             ++..+.  ..+.+.++.|.|++..+++-. |..|.+|++.....+ .....      .....+-+|+|.. -.
T Consensus       107 S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn  185 (370)
T KOG1007|consen  107 SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN  185 (370)
T ss_pred             cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence                   111111  124556789999999988775 889999999776542 11111      1234566788833 23


Q ss_pred             EEEEcCCceEEEEeCCCCCceeee-eecccceEEEEECCCCCE-EEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEE
Q 021319          164 FFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~-l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~  240 (314)
                      .+....++++..|+.++......+ ..|...+..++|+|+.++ ||+|+.||.|++||.+.. ..++++.+|..-|.++.
T Consensus       186 qv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR  265 (370)
T KOG1007|consen  186 QVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR  265 (370)
T ss_pred             eEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence            344567899999999877655544 478888999999999875 889999999999999865 45788999999999999


Q ss_pred             EccC-CcEEEEecCCceEEEEECCCCC------------------------eE-----EEE-eccCccceeEEcCCCCe-
Q 021319          241 FSHT-GDYIASASEDLFIDISNVHTGR------------------------TV-----HQI-PCRAAMNSVEWNPKYNL-  288 (314)
Q Consensus       241 ~sp~-~~~l~s~s~d~~v~v~~~~~~~------------------------~~-----~~~-~~~~~i~~v~~~~~~~~-  288 (314)
                      |+|. .++++|||.|..|.+|-...-.                        ++     ..+ .|..+|++++|+.-.+. 
T Consensus       266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi  345 (370)
T KOG1007|consen  266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI  345 (370)
T ss_pred             ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence            9997 5678899999999998653210                        11     111 14568999999976655 


Q ss_pred             eEEEecCC
Q 021319          289 LAYAGDDK  296 (314)
Q Consensus       289 la~~~~d~  296 (314)
                      ||+=+-|+
T Consensus       346 FASLSYDG  353 (370)
T KOG1007|consen  346 FASLSYDG  353 (370)
T ss_pred             EEEeccCc
Confidence            46666664

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=9.7e-18  Score=141.06  Aligned_cols=260  Identities=13%  Similarity=0.151  Sum_probs=179.3

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceee----EEeecCCCCEEEEEEc-CCCCCEEEEEeCCCcEE
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD----IELRGHADSVDQLCWD-PKHADLIATASGDKTVR   92 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~----~~~~~h~~~v~~l~~~-~~~~~~l~s~~~D~~v~   92 (314)
                      .|...|.||.|+.....+.+++.+..++-|++.+........    ....-|.   ....-- ..+.+.++.++.||.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~---~~rs~~~g~~~d~~~i~s~DGkf~   88 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHL---GGRSSGGGKGSDTLLICSNDGRFV   88 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccc---cccccCCCCCcceEEEEcCCceEE
Confidence            577788899999877777777766666666664322111000    0001121   111100 11245788899999999


Q ss_pred             EEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCC
Q 021319           93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      |-+- .+++.+... +.+...+-.|+|||.-|++.+.||.|++|.-. +-.... .+...++.+++|.|+.+.++.+. .
T Consensus        89 il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g  165 (737)
T KOG1524|consen   89 ILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G  165 (737)
T ss_pred             Eecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence            8875 355444433 23445677899999999999999999999832 211111 34566899999999988776654 4


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      +.+.+-.+.....+.....|.+-|.+++|++..+.+++|+.|-..++||- .+..+.+-..|+.+|++++|+|+ ..++.
T Consensus       166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v  243 (737)
T KOG1524|consen  166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLL  243 (737)
T ss_pred             CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceee
Confidence            56666666555555667889999999999999999999999999999995 56666666789999999999999 55544


Q ss_pred             ecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319          251 ASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      +|..         +.+  ..-+..++|..++|||||..++.|...+
T Consensus       244 ~S~n---------t~R--~~~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  244 WSYN---------TAR--FSSPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             eeee---------eee--ecCCCccceEEEEEcCCCceeeccccCc
Confidence            4433         211  2223457899999999999988776554

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.6e-17  Score=131.32  Aligned_cols=267  Identities=16%  Similarity=0.202  Sum_probs=182.8

Q ss_pred             CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-CCCEEEEEeCCCcEEEEeCCCCceeeeEEecCc-
Q 021319           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSGE-  110 (314)
Q Consensus        33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-  110 (314)
                      ..+|++-+.|+||+||..+..    ...++++|...++.+.|... .+..+.||+.||+||+||+|............. 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~----~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ----LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh----hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence            458888889999999987632    22367889999999988654 567899999999999999998765544433322 


Q ss_pred             ---eEEEEEccCCCEEEEEeC----CCcEEEEEccCCeE-eeee--ccCcceeeEEeccCC-CeEEEEcCCceEEEEeCC
Q 021319          111 ---NINITYKPDGTHIAVGNR----DDELTILDVRKFKP-IHRR--KFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYP  179 (314)
Q Consensus       111 ---~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~-~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~  179 (314)
                         .++++..-.++.+++|+.    +-.+.+||+|..+. +..+  .+.-.+.++.|+|.. +.+++++.||-+.+|+..
T Consensus       117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence               234444446778888764    45689999998776 4333  244578999999976 677788899999999986


Q ss_pred             CCC---ceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeeccc---------CeEE-E-EEcc-
Q 021319          180 SLR---PLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEW---------PVRT-I-SFSH-  243 (314)
Q Consensus       180 ~~~---~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~---------~v~~-~-~~sp-  243 (314)
                      ...   ++.....|...|-++.|..++ +.+.+-+..++..+|+++.+.+...++....         .+.. | +.+| 
T Consensus       197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~  276 (376)
T KOG1188|consen  197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG  276 (376)
T ss_pred             CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence            432   344445677889999998877 3467778899999999988765544432210         1100 1 1234 


Q ss_pred             CCcEEEEecCC-ceE--EEE-ECCCCCeEE---EEe--ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          244 TGDYIASASED-LFI--DIS-NVHTGRTVH---QIP--CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       244 ~~~~l~s~s~d-~~v--~v~-~~~~~~~~~---~~~--~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +....+.++.| +..  ... ++.++..+.   .+.  +..-|+++.|.-.+.++.|||+|        |-+++|-.
T Consensus       277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGED--------G~l~~Wk~  345 (376)
T KOG1188|consen  277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGED--------GLLQAWKV  345 (376)
T ss_pred             CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCC--------ceEEEEec
Confidence            34566666653 333  322 223333322   222  23458999999889999999977        68888864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=1.7e-17  Score=129.75  Aligned_cols=239  Identities=19%  Similarity=0.267  Sum_probs=169.0

Q ss_pred             ecccccEEEEEECCCCC-----EEEEeeCCCcEEEeecCCCCCCceeeEE-----eecCCCCEEEEEEcCCCCCEEEEEe
Q 021319           17 TGHKKKVHSVAWNCTGT-----KLASGSVDQTARVWHIEPHGHGKVKDIE-----LRGHADSVDQLCWDPKHADLIATAS   86 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~-----~l~s~~~D~~v~iw~~~~~~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~~l~s~~   86 (314)
                      ..|.-+++.+.|.|+..     +|||+|  ..+|+|.+............     -..+..++++..|+.-+.++|.++|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            46888999999999873     566665  47999998743322111111     2235678999999988889999999


Q ss_pred             CCCcEEEEeCCCCce----eeeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC
Q 021319           87 GDKTVRLWDARSGKC----SQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (314)
Q Consensus        87 ~D~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      -|-+..|||+.++..    .+...+..++..++|...+ ..+++.+.||++++||+|....      .    .       
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH------S----T-------  233 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH------S----T-------  233 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc------c----e-------
Confidence            999999999998732    2233455667778888755 4567788899999999876321      0    0       


Q ss_pred             CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECC-CCCEEEEeeCCC-eEEEeeCCC-cEEEEEeeecccCeEE
Q 021319          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADS-LVSLWDISE-MLCVRTFTKLEWPVRT  238 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~t~~~dg-~i~vwd~~~-~~~~~~~~~~~~~v~~  238 (314)
                                  .+|.-+.         -..+...++|++ |-++||+-..|. .|.+.|++. ...+.++.+|...|+.
T Consensus       234 ------------IIYE~p~---------~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNg  292 (364)
T KOG0290|consen  234 ------------IIYEDPS---------PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNG  292 (364)
T ss_pred             ------------EEecCCC---------CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccc
Confidence                        1111111         022345566765 446777766664 699999985 4567788999999999


Q ss_pred             EEEccC-CcEEEEecCCceEEEEECCCC------CeEEEEeccCccceeEEcCC-CCeeEEEecC
Q 021319          239 ISFSHT-GDYIASASEDLFIDISNVHTG------RTVHQIPCRAAMNSVEWNPK-YNLLAYAGDD  295 (314)
Q Consensus       239 ~~~sp~-~~~l~s~s~d~~v~v~~~~~~------~~~~~~~~~~~i~~v~~~~~-~~~la~~~~d  295 (314)
                      |+|.|. ...|+|++.|..+.+||+...      .++..+...++|+.+.|+|. ...||.+...
T Consensus       293 IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  293 IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence            999997 478999999999999998752      23334445778999999975 5677766644

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.77  E-value=1.1e-16  Score=125.02  Aligned_cols=250  Identities=20%  Similarity=0.302  Sum_probs=177.5

Q ss_pred             cceeeecccccEEEEEECCCCCEEE-EeeCC-------CcEEEeecCCCCCC-ceeeE----Eee-cCCCCEEEEEEcCC
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLA-SGSVD-------QTARVWHIEPHGHG-KVKDI----ELR-GHADSVDQLCWDPK   77 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~-s~~~D-------~~v~iw~~~~~~~~-~~~~~----~~~-~h~~~v~~l~~~~~   77 (314)
                      ..+.|..|.+.|..++-+|-.+.|+ |+-+|       -.+.||.+...-.. .....    .+. .+-+.|.|+-|.|+
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            4466777899999999999776544 44321       25678988542211 11111    122 34558999999997


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCce-eeeEEe------cCceEEEEEcc--CCCEEEEEeCCCcEEEEEccCCeEeeeec-
Q 021319           78 HADLIATASGDKTVRLWDARSGKC-SQQAEL------SGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRK-  147 (314)
Q Consensus        78 ~~~~l~s~~~D~~v~iwd~~~~~~-~~~~~~------~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-  147 (314)
                      . ..+++- .|..|.+|++..+.. +.....      .....+-+|+|  +++.+++. .|+++..||+|+.+....++ 
T Consensus       135 s-~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d  211 (370)
T KOG1007|consen  135 S-DKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED  211 (370)
T ss_pred             C-CeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh
Confidence            5 455544 489999999987754 222211      11223456777  66666654 68899999999877665553 


Q ss_pred             -cCcceeeEEeccCCCeEE-EEcCCceEEEEeCCCC-CceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCc
Q 021319          148 -FGYEVNEIAWNMTGEMFF-LTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM  223 (314)
Q Consensus       148 -~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~  223 (314)
                       ++..++.+.|+|+...++ +++.+|.+++|+.+.. .|+.++.+|...++++.|+|.- +++.+|+.|..|.+|-...-
T Consensus       212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence             567789999999987655 5567899999998754 4888999999999999999965 56789999999999964211


Q ss_pred             -----------------------------EEEEEeeecccCeEEEEEccCCcE-EEEecCCceEEEEECCC
Q 021319          224 -----------------------------LCVRTFTKLEWPVRTISFSHTGDY-IASASEDLFIDISNVHT  264 (314)
Q Consensus       224 -----------------------------~~~~~~~~~~~~v~~~~~sp~~~~-l~s~s~d~~v~v~~~~~  264 (314)
                                                   -.+.++..|+..|.+++||.-..+ +||-|.||++.|-.+..
T Consensus       292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                                         013456678889999999976665 66779999999988754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.5e-16  Score=140.14  Aligned_cols=222  Identities=17%  Similarity=0.169  Sum_probs=148.5

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCC---CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D---~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      .+.+..|...+.+.+|||||+.|+.++.+   ..|++||+.+..  ......+.+|   ....+|+|++..++++.+.++
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g  270 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--RKVVASFRGH---NGAPAFSPDGSRLAFASSKDG  270 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--eEEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence            45567788899999999999999988754   369999986532  1111123333   346799998654444555788


Q ss_pred             cEEEE--eCCCCceeeeEEecCceEEEEEccCCCEEEEEe-CCCcEEEEEccCCe-EeeeeccCcceeeEEeccCCCeEE
Q 021319           90 TVRLW--DARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        90 ~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      .+.||  |+.++................|+|||+.|+..+ .++...+|++.... ........ . ....|+|+++.++
T Consensus       271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~-~~~~~SpDG~~ia  348 (429)
T PRK01742        271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G-YSAQISADGKTLV  348 (429)
T ss_pred             cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-CCccCCCCCCEEE
Confidence            77766  666665443322233445688999999877554 57788888764321 11111111 1 4567999999988


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeC--CCcEEEEEeeecccCeEEEEEcc
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI--SEMLCVRTFTKLEWPVRTISFSH  243 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~sp  243 (314)
                      +...++ +..|++...+.......  ......+|+|+|++++.++.++.+.+|++  .++..++.+..++..+...+|+|
T Consensus       349 ~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        349 MINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             EEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence            877654 55578765543221111  12356789999999999999998888876  35677778877777788899998


Q ss_pred             C
Q 021319          244 T  244 (314)
Q Consensus       244 ~  244 (314)
                      -
T Consensus       426 ~  426 (429)
T PRK01742        426 Y  426 (429)
T ss_pred             C
Confidence            4

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=9e-16  Score=140.46  Aligned_cols=253  Identities=14%  Similarity=0.135  Sum_probs=175.6

Q ss_pred             ccceeeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCC---ceeeEEeecCCCCEEEEEEcCCCCCEEEEEe
Q 021319           11 LHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~   86 (314)
                      +.+..+..|...|..++.+++. .+|+|||.||+||+|+...-...   ......+.-....+.++...+. ++.+|.++
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~-~~~~Av~t 1117 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN-GDQFAVST 1117 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC-CCeEEEEc
Confidence            5556677899999999988765 99999999999999998532211   1222233334567888888776 46778889


Q ss_pred             CCCcEEEEeCCCCce-------eeeEEec--CceEEEE-Ec-cCCC-EEEEEeCCCcEEEEEccCCeEeeeeccC---cc
Q 021319           87 GDKTVRLWDARSGKC-------SQQAELS--GENINIT-YK-PDGT-HIAVGNRDDELTILDVRKFKPIHRRKFG---YE  151 (314)
Q Consensus        87 ~D~~v~iwd~~~~~~-------~~~~~~~--~~~~~~~-~~-~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~  151 (314)
                      .||.|++.++.....       .+..+.+  +..+.|. +. ..+. .++.+...+.+..||+++.....+.+..   ..
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            999999998865211       1222222  2233332 22 2333 6777888899999999987665554432   45


Q ss_pred             eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee-ecccceEEEEECCCC---CEEEEee--CCCeEEEeeCCCcEE
Q 021319          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMG---RYFAVGS--ADSLVSLWDISEMLC  225 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~---~~l~t~~--~dg~i~vwd~~~~~~  225 (314)
                      +.+++.+|.+..++.|+..|.+.+||++=..++.... .+...++.+..+|..   ...++++  ..+.|.+|++.++.+
T Consensus      1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            8889999999999999999999999997666665542 344667777777643   3444444  467899999999988


Q ss_pred             EEEeeec-cc------------------CeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          226 VRTFTKL-EW------------------PVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       226 ~~~~~~~-~~------------------~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      ...+... +.                  +....++.-.+.++.+|+.|..|+.||...
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence            7766433 11                  122234444567899999999999999754

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.75  E-value=3.2e-17  Score=130.14  Aligned_cols=238  Identities=22%  Similarity=0.322  Sum_probs=144.0

Q ss_pred             eeccceeeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319            9 KNLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (314)
Q Consensus         9 ~~~~~~~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~   87 (314)
                      +....+.|.||...|+.+.|.|+. ++++|||.|.+||+|++++..+- ...--+.||.+.|.++.|++++ .+|+|++.
T Consensus       124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv-~VfGG~egHrdeVLSvD~~~~g-d~i~ScGm  201 (385)
T KOG1034|consen  124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV-AVFGGVEGHRDEVLSVDFSLDG-DRIASCGM  201 (385)
T ss_pred             hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-EEecccccccCcEEEEEEcCCC-CeeeccCC
Confidence            334556788999999999999986 68999999999999999764211 1111356899999999999985 69999999


Q ss_pred             CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      |.++++|++...+....++.     +..|+|++...-.-  .....+.+..+     +-.+...+.++.|-  |+++++-
T Consensus       202 Dhslk~W~l~~~~f~~~lE~-----s~~~~~~~t~~pfp--t~~~~fp~fst-----~diHrnyVDCvrw~--gd~ilSk  267 (385)
T KOG1034|consen  202 DHSLKLWRLNVKEFKNKLEL-----SITYSPNKTTRPFP--TPKTHFPDFST-----TDIHRNYVDCVRWF--GDFILSK  267 (385)
T ss_pred             cceEEEEecChhHHhhhhhh-----hcccCCCCccCcCC--ccccccccccc-----cccccchHHHHHHH--hhheeec
Confidence            99999999985543211111     12233322110000  00000000000     00011112233332  2333333


Q ss_pred             cCCceEEEEeCCCC-Cc-------------eeeeeecccceEEE--EECCCCCEEEEeeCCCeEEEeeCCCcEEE--EEe
Q 021319          168 TGNGTVEVLTYPSL-RP-------------LDTVVAHTAGCYCI--AIDPMGRYFAVGSADSLVSLWDISEMLCV--RTF  229 (314)
Q Consensus       168 ~~~g~~~~~~~~~~-~~-------------~~~~~~~~~~i~~i--~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~  229 (314)
                      +.++.+..|..... +.             +..+.--...++-+  +|+|-+++||.|...|.|.+||++.....  .++
T Consensus       268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl  347 (385)
T KOG1034|consen  268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL  347 (385)
T ss_pred             ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence            44444444433100 00             01111112233333  56677899999999999999999765432  122


Q ss_pred             e--ecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          230 T--KLEWPVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       230 ~--~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      .  .....|...+||-||.+|+...+|+.|.-||.
T Consensus       348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            2  23457899999999999999999999999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=7.6e-16  Score=125.22  Aligned_cols=212  Identities=16%  Similarity=0.244  Sum_probs=151.9

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF  140 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  140 (314)
                      .+.||.++|..+.|+|.+.+.|||||.|.+|.||.+..+......  ......+          .               
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l--tepvv~L----------~---------------  128 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL--TEPVVEL----------Y---------------  128 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc--ccceEEE----------e---------------
Confidence            356999999999999999999999999999999998755422211  1111111          1               


Q ss_pred             eEeeeeccCcceeeEEeccCC-CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319          141 KPIHRRKFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (314)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd  219 (314)
                            -+...+..++|+|.. +.+++++.|..+.+|+..+.+.+.++. |..-|++++|+.+|.+|++.+.|..|||||
T Consensus       129 ------gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~d  201 (472)
T KOG0303|consen  129 ------GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVID  201 (472)
T ss_pred             ------ecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEc
Confidence                  112345567788765 556677788888888888887776665 999999999999999999999999999999


Q ss_pred             CCCcEEEEEeeeccc-CeEEEEEccCCcEEEEe---cCCceEEEEECCC---CCeEEEEeccCccceeEEcCCCCeeEEE
Q 021319          220 ISEMLCVRTFTKLEW-PVRTISFSHTGDYIASA---SEDLFIDISNVHT---GRTVHQIPCRAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       220 ~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~---s~d~~v~v~~~~~---~~~~~~~~~~~~i~~v~~~~~~~~la~~  292 (314)
                      .++++.+..-..|+. .-..+-|--++.++-||   ..+..+-+||...   .-.+..+.....|.==-|-|+..++..+
T Consensus       202 pr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~  281 (472)
T KOG0303|consen  202 PRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC  281 (472)
T ss_pred             CCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE
Confidence            999999887766654 23345577788855555   3467899998654   3334445444455544666777777666


Q ss_pred             ecCCcccccccceEEeccccC
Q 021319          293 GDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       293 ~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |.-       +|.||-|-+++
T Consensus       282 GKG-------D~~IRYyEit~  295 (472)
T KOG0303|consen  282 GKG-------DSSIRYFEITN  295 (472)
T ss_pred             ecC-------CcceEEEEecC
Confidence            632       36788777654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=3.2e-15  Score=118.47  Aligned_cols=231  Identities=16%  Similarity=0.251  Sum_probs=158.1

Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEE-EEEccCCCEEEE-EeCC------CcEEEEEccCC
Q 021319           69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAV-GNRD------DELTILDVRKF  140 (314)
Q Consensus        69 v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~d------~~i~i~d~~~~  140 (314)
                      ...++|+.+.  -..+.+.|.-.|||+.+.-+............. +.+.--.++++. |+.+      ..+.|||-...
T Consensus         8 ~lsvs~NQD~--ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    8 TLSVSFNQDH--SCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             eeEEEEccCC--ceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            3458998764  344666777789999865332111111111122 112223455654 3332      36999997677


Q ss_pred             eEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCC-CCCceeeee--ecccceEEEEECCCCCEEEEeeC-CCeEE
Q 021319          141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRPLDTVV--AHTAGCYCIAIDPMGRYFAVGSA-DSLVS  216 (314)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~~-dg~i~  216 (314)
                      +++.......++..+....+  .+ +....+.+.+|.+. ..+.+..+.  ..+.+..+++-+.+..+||.-+. -|.|+
T Consensus        86 ~~i~el~f~~~I~~V~l~r~--ri-Vvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ  162 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRD--RI-VVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ  162 (346)
T ss_pred             cEEEEEEeccceeeEEEcCC--eE-EEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence            77777777778888776543  23 33346789999887 445444443  22334444444444556665444 48999


Q ss_pred             EeeCCCcEE--EEEeeecccCeEEEEEccCCcEEEEecCCce-EEEEECCCCCeEEEEec---cCccceeEEcCCCCeeE
Q 021319          217 LWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIPC---RAAMNSVEWNPKYNLLA  290 (314)
Q Consensus       217 vwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~-v~v~~~~~~~~~~~~~~---~~~i~~v~~~~~~~~la  290 (314)
                      +-|+...+.  ...+..|+.+|.+++.+-+|..+||||..|+ |+|||.++|+++.++.-   +..|.+++|||+..+||
T Consensus       163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~La  242 (346)
T KOG2111|consen  163 IVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLA  242 (346)
T ss_pred             EEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEE
Confidence            999976655  4677899999999999999999999999886 79999999999998863   45799999999999999


Q ss_pred             EEecCCcccccccceEEecccc
Q 021319          291 YAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       291 ~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      .+|        |.||+-||++.
T Consensus       243 vsS--------dKgTlHiF~l~  256 (346)
T KOG2111|consen  243 VSS--------DKGTLHIFSLR  256 (346)
T ss_pred             EEc--------CCCeEEEEEee
Confidence            887        44899999984

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=4.5e-16  Score=131.15  Aligned_cols=190  Identities=16%  Similarity=0.210  Sum_probs=131.5

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeEE-----ecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeE
Q 021319           82 IATASGDKTVRLWDARSGKCSQQAE-----LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI  155 (314)
Q Consensus        82 l~s~~~D~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  155 (314)
                      ++-|-.-|.+.+.|.......+.++     .+....++.|.|-+ ..+++...+|.+.++|......       ....+.
T Consensus       188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~-------~t~p~~  260 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG-------ATAPSY  260 (636)
T ss_pred             eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-------CCCCcc
Confidence            3457777888888877644333222     12445678888754 4556677899999998632111       111111


Q ss_pred             EeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC
Q 021319          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP  235 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~  235 (314)
                      ...+++..+......+.      ....|+..+..-.+.|+..+|+|||++||+-+.||.+||||..+.+.+-.++-+=..
T Consensus       261 ~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG  334 (636)
T KOG2394|consen  261 QALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG  334 (636)
T ss_pred             cccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc
Confidence            12233444433322211      122455555555668999999999999999999999999999887766555444457


Q ss_pred             eEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcC
Q 021319          236 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNP  284 (314)
Q Consensus       236 v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~  284 (314)
                      ..|++|||||+|+++|++|-.|.||.+...+++-.- .|+..|+.|+|-|
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            899999999999999999999999999998887553 3677899999985

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.5e-15  Score=132.49  Aligned_cols=277  Identities=19%  Similarity=0.250  Sum_probs=184.7

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC--CEEEEEeCCCcEEE
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA--DLIATASGDKTVRL   93 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~D~~v~i   93 (314)
                      +.|-...=.--.||+|+++++.+.. ..|+||...++.+.    ..+.+|..++..+.+.|...  .++.+++.||.|++
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i----~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v   86 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECI----TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV   86 (792)
T ss_pred             eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhh----hhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence            3333333333458999998777764 68999988765432    25789999999999988765  46779999999999


Q ss_pred             EeCCCCceeeeEEecCceEEEEEcc----CCCEEEEEeCCCcE-EEEEccCCeEeeee-------------ccCcceeeE
Q 021319           94 WDARSGKCSQQAELSGENINITYKP----DGTHIAVGNRDDEL-TILDVRKFKPIHRR-------------KFGYEVNEI  155 (314)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~d~~i-~i~d~~~~~~~~~~-------------~~~~~~~~~  155 (314)
                      ||...+...+.+....++..+.+.|    ....+..+..+..+ .....+..+...+.             +.......+
T Consensus        87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I  166 (792)
T KOG1963|consen   87 WDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI  166 (792)
T ss_pred             ecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence            9999998888777666655544422    11122222222211 11111111111110             001124567


Q ss_pred             EeccCCCeEEEEcCCceEEEEeCCCCCce----eeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC--c--EEEE
Q 021319          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPL----DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE--M--LCVR  227 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~--~--~~~~  227 (314)
                      ..++.++........+ +.+|..+.....    ..-..|.-.++|.+++|+++++|+|..||+|.+|.-..  .  .-..
T Consensus       167 ~~~~~ge~~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t  245 (792)
T KOG1963|consen  167 VDNNSGEFKGIVHMCK-IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT  245 (792)
T ss_pred             EEcCCceEEEEEEeee-EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence            7777777766665544 344444332110    11124666789999999999999999999999996432  1  1224


Q ss_pred             EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCccc
Q 021319          228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       228 ~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      .+.-|..+|.+++|+++|.+|.||+..+.+-+|.+++++ .+-+| ..++|..+.++|++.+.+..-.|..+-
T Consensus       246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~  317 (792)
T KOG1963|consen  246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIH  317 (792)
T ss_pred             EEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEE
Confidence            555677899999999999999999999999999999988 22233 367899999999999988888776544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=2.8e-15  Score=119.47  Aligned_cols=272  Identities=15%  Similarity=0.260  Sum_probs=192.7

Q ss_pred             cccEEEEEECCCCCEEEEee-CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~-~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      -..|.-+.|+.|.-+++++. .|+.|.+|++...+    ....+..-.+.+..++|+|++..++.+..-|-.|.+|.+.+
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe----w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t  123 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE----WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT  123 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecce----eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc
Confidence            35788899999998877765 68899999986432    23455666788999999999888888999999999999998


Q ss_pred             CceeeeEEecCceEEEEEccCCCEEEEEeCCCc------------------------------------EEEEEccCCeE
Q 021319           99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDE------------------------------------LTILDVRKFKP  142 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~------------------------------------i~i~d~~~~~~  142 (314)
                      .++......+.....++|+|||++.+..++...                                    +.+||---.-.
T Consensus       124 ~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk  203 (447)
T KOG4497|consen  124 QKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK  203 (447)
T ss_pred             ceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe
Confidence            877655444555566888999988887776432                                    22222111111


Q ss_pred             eeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceee------------------------------------
Q 021319          143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT------------------------------------  186 (314)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------------------------------  186 (314)
                      +..++.+..+..++|+|.+..+++|..|+.+++.+.-+-+++.+                                    
T Consensus       204 v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~  283 (447)
T KOG4497|consen  204 VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD  283 (447)
T ss_pred             eeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc
Confidence            22233444577889999999999999998888764211100000                                    


Q ss_pred             eeec------------------------------ccceEEEEECCCCCEEEEeeCC--CeEEEeeCCCcEEEEEeeeccc
Q 021319          187 VVAH------------------------------TAGCYCIAIDPMGRYFAVGSAD--SLVSLWDISEMLCVRTFTKLEW  234 (314)
Q Consensus       187 ~~~~------------------------------~~~i~~i~~~~~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~  234 (314)
                      +..|                              .-++.-++|++|..++||-...  ..+-+||+...+.. .+.....
T Consensus       284 ~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~-avLiQk~  362 (447)
T KOG4497|consen  284 LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH-AVLIQKH  362 (447)
T ss_pred             cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh-hhhhhcc
Confidence            0000                              1124568999999999988654  46999999765432 2223456


Q ss_pred             CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319          235 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      +|.+..|+|.-..|+.......+..|...-...+..-..+-.|..+.|+-+|..++-.|.|.
T Consensus       363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence            89999999999888888777789999876655554433345799999999999999999875

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.9e-15  Score=115.59  Aligned_cols=233  Identities=15%  Similarity=0.182  Sum_probs=165.2

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCC------CCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      ..|.+-+|+|.+++|++|..+|.|.+..+..-.      .++......++|.++|+.++|+.   .+|++|+ ||.|+=|
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEe
Confidence            356677899999999999999999999875321      12233344579999999999973   4666665 5999988


Q ss_pred             eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEE
Q 021319           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (314)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  174 (314)
                      ..+.....                          .+.-.+|.+..+...... .-.+++.+...|..+.++++++|+.++
T Consensus        87 ~W~E~~es--------------------------~~~K~lwe~~~P~~~~~~-evPeINam~ldP~enSi~~AgGD~~~y  139 (325)
T KOG0649|consen   87 EWNEEEES--------------------------LATKRLWEVKIPMQVDAV-EVPEINAMWLDPSENSILFAGGDGVIY  139 (325)
T ss_pred             eehhhhhh--------------------------ccchhhhhhcCccccCcc-cCCccceeEeccCCCcEEEecCCeEEE
Confidence            76532210                          011123333222211111 113566666677777788888999999


Q ss_pred             EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC--------eEEEEEccCCc
Q 021319          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP--------VRTISFSHTGD  246 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~sp~~~  246 (314)
                      -|++++.+..+++.+|..-+-++.--.....+.+|+.||++|+||+++.++++.+...+.+        -.-.+..-+..
T Consensus       140 ~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed  219 (325)
T KOG0649|consen  140 QVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED  219 (325)
T ss_pred             EEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc
Confidence            9999998888899999999999988555667889999999999999999998887654321        11123334567


Q ss_pred             EEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319          247 YIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       247 ~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~  285 (314)
                      +|++|+. -.+.+|++...+....++-.+++--|.|-.+
T Consensus       220 WlvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~d  257 (325)
T KOG0649|consen  220 WLVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVDD  257 (325)
T ss_pred             eEEecCC-CceeEEeccCCCceEEEecccceeEeeeecc
Confidence            7776653 3589999999888888888888888888643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=2.1e-15  Score=122.51  Aligned_cols=263  Identities=16%  Similarity=0.209  Sum_probs=194.0

Q ss_pred             cccEEEEEECCCCC--EEEEeeCCCcEEEeecCCCCCCcee-e-EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           20 KKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVK-D-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        20 ~~~V~~v~~s~~g~--~l~s~~~D~~v~iw~~~~~~~~~~~-~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      ...|.+++|.-+++  .|..++.|-.+.....+........ . -....-..+|..++..   ...|++|-.+|.+.+|.
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEEe
Confidence            45788888886664  4666667778877766543221110 0 0223345566666543   24678899999999998


Q ss_pred             CCCCcee----eeEEecCceEEEEEccCCCE-EEEEeCC--CcEEEEEccCCeEeeeeccC----------cceeeEEec
Q 021319           96 ARSGKCS----QQAELSGENINITYKPDGTH-IAVGNRD--DELTILDVRKFKPIHRRKFG----------YEVNEIAWN  158 (314)
Q Consensus        96 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~-l~~~~~d--~~i~i~d~~~~~~~~~~~~~----------~~~~~~~~~  158 (314)
                      ...+...    ...........+.-.+..+. +++|+..  ..+.+||+...+++...+..          .-...+.|-
T Consensus       132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            8755421    11122233334444454444 4558888  78999999988877665432          124566777


Q ss_pred             cC--CCeEEEEcCCceEEEEeCC-CCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE-eeeccc
Q 021319          159 MT--GEMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEW  234 (314)
Q Consensus       159 ~~--~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~~~~  234 (314)
                      +.  ...|++++..+.+++|+.. +.+|+..+...+.+++++...|+++.+++|..-|.+..||+++++.+.. +.+...
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG  291 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG  291 (412)
T ss_pred             CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence            76  6788999999999999975 5678888888889999999999999999999999999999999887755 788889


Q ss_pred             CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319          235 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~  285 (314)
                      .+++|..+|..++||+++-|..++|+|+.+-+++.+.=.+...+++-+.++
T Consensus       292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            999999999999999999999999999999777766555677888877664

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=7.6e-16  Score=126.17  Aligned_cols=184  Identities=16%  Similarity=0.200  Sum_probs=140.2

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEEccCC-eEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee--
Q 021319          112 INITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV--  188 (314)
Q Consensus       112 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--  188 (314)
                      ..++|+++|..|++++.||++++|+..+. ......++..++.++.|+|+++.++..+.+ ..++|+..+.-++....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            56889999999999999999999995444 444556778899999999999999999988 89999988775554433  


Q ss_pred             ecccceEEEEECCCC-----CEEEEeeCCCeEEEeeCCCcEE---E--EEeeecccCeEEEEEccCCcEEEEecCCceEE
Q 021319          189 AHTAGCYCIAIDPMG-----RYFAVGSADSLVSLWDISEMLC---V--RTFTKLEWPVRTISFSHTGDYIASASEDLFID  258 (314)
Q Consensus       189 ~~~~~i~~i~~~~~~-----~~l~t~~~dg~i~vwd~~~~~~---~--~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~  258 (314)
                      ........+.|+.++     +.++....-+.|+.||+.....   +  .+.......+++++-+++|+++|.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            222345567787777     3444555556788877643221   1  11112223699999999999999999999999


Q ss_pred             EEECCCCCeEEEEe--ccCccceeEEcCCCCeeEEEecCC
Q 021319          259 ISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       259 v~~~~~~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      ++++.+-+.++.++  |...|+.|.|+|+.+.+++.+.|.
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence            99999888777665  567899999999999988877663

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.72  E-value=8.5e-16  Score=119.92  Aligned_cols=154  Identities=22%  Similarity=0.374  Sum_probs=112.4

Q ss_pred             eeEEeccCCCeEEEEcC----------CceEEEEeCC-CCCceeeeee-cccceEEEEECCCCCEEEEe--eCCCeEEEe
Q 021319          153 NEIAWNMTGEMFFLTTG----------NGTVEVLTYP-SLRPLDTVVA-HTAGCYCIAIDPMGRYFAVG--SADSLVSLW  218 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~~~----------~g~~~~~~~~-~~~~~~~~~~-~~~~i~~i~~~~~~~~l~t~--~~dg~i~vw  218 (314)
                      ..+.|++.|+.+++-..          .+...+|.+. ...+...+.. ..+.|.+++|+|+|+.||+.  ..+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45678888887766543          2344555542 2234444433 34569999999999987644  456799999


Q ss_pred             eCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC---ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319          219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      |++ +..+..+.  ..++..+.|||+|++|++|+.+   |.+.+||+.+.+.+.+..+. .++.++|+|+|++|+++...
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence            996 55555553  4567899999999999998754   67999999988888777654 47899999999999998864


Q ss_pred             CcccccccceEEecccc
Q 021319          296 KNKYQADEGVFRIYGFE  312 (314)
Q Consensus       296 ~~~~~~~~~~~~~~~~~  312 (314)
                      . + ...+..++||+++
T Consensus       165 ~-r-~~~dng~~Iw~~~  179 (194)
T PF08662_consen  165 P-R-LRVDNGFKIWSFQ  179 (194)
T ss_pred             c-c-eeccccEEEEEec
Confidence            2 1 2356889999985

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.72  E-value=7.8e-16  Score=122.19  Aligned_cols=232  Identities=19%  Similarity=0.290  Sum_probs=170.4

Q ss_pred             cccEEEEEEC-------CCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCC---EEEEEEcCCCCCEEEEEeCCC
Q 021319           20 KKKVHSVAWN-------CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS---VDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        20 ~~~V~~v~~s-------~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      ...|++.+|-       |+..++++.+.|.-|++||.-++..  ..+.+.-.|.+.   ..+|+|+|++. .|+ ++...
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~l--raSy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykr  179 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKL--RASYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKR  179 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccc--ccchhhhhhHHhhhhheeEEecCCCC-eEe-ecccc
Confidence            3568888885       6778999999999999999866432  222222234443   45799999875 443 56778


Q ss_pred             cEEEEeC-CCCceeeeE--------EecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEec
Q 021319           90 TVRLWDA-RSGKCSQQA--------ELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWN  158 (314)
Q Consensus        90 ~v~iwd~-~~~~~~~~~--------~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~  158 (314)
                      +||++|+ +.|+.....        ...+-+.+++|+|-. +.+++|+....+-|+.-....|+... .++.-+..+.|.
T Consensus       180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~  259 (406)
T KOG2919|consen  180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC  259 (406)
T ss_pred             eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec
Confidence            9999998 666532211        112334568899855 58899998888888876665555443 455679999999


Q ss_pred             cCCCeEEEEcC-CceEEEEeCCCC-Cceeeeeecccc-eEE--EEECCCCCEEEEeeCCCeEEEeeCCC-cEEEEEeeec
Q 021319          159 MTGEMFFLTTG-NGTVEVLTYPSL-RPLDTVVAHTAG-CYC--IAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTKL  232 (314)
Q Consensus       159 ~~~~~~~~~~~-~g~~~~~~~~~~-~~~~~~~~~~~~-i~~--i~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~  232 (314)
                      ++|+.++++.. +..|..|+++.. .++..+..|... -..  .+..|++++||+|+.||.|++||+++ +..+..+..+
T Consensus       260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~  339 (406)
T KOG2919|consen  260 EDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY  339 (406)
T ss_pred             cCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc
Confidence            99999998874 678999998754 466666666552 223  45678999999999999999999987 5556677788


Q ss_pred             ccCeEEEEEccCCcEEEEecCCc
Q 021319          233 EWPVRTISFSHTGDYIASASEDL  255 (314)
Q Consensus       233 ~~~v~~~~~sp~~~~l~s~s~d~  255 (314)
                      ...++.++++|-=.++|++|...
T Consensus       340 sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  340 SDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             cccccceecCcccceeeeccCce
Confidence            88999999999988899888763

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=5.6e-15  Score=125.56  Aligned_cols=271  Identities=15%  Similarity=0.204  Sum_probs=192.6

Q ss_pred             cccccEEEEEECCCCCEE-EEeeCCCcEEEeecCCCCCCceeeEEeecCCCC--EEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           18 GHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADS--VDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l-~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      +|...-+.+..+|||+|+ +||-+--.|++||+..      .++.+..|.++  |.-.-.+.+- .-++---.|.+|.+.
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan------LSLKFERhlDae~V~feiLsDD~-SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN------LSLKFERHLDAEVVDFEILSDDY-SKSVFLQNDRTIEFH  121 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEccc------ceeeeeecccccceeEEEeccch-hhheEeecCceeeeh
Confidence            577888999999999985 5566889999999864      34455666543  3333333222 223334456666554


Q ss_pred             eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCCceE
Q 021319           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNGTV  173 (314)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~  173 (314)
                      .-- | ......+......++++.-..-|.+++....+.-+++..++.+...+.. ..++++..++...++++|+.+|.+
T Consensus       122 ak~-G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V  199 (703)
T KOG2321|consen  122 AKY-G-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV  199 (703)
T ss_pred             hhc-C-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence            321 1 1111112222234555555555677777778888999988887776654 678899999999999999999999


Q ss_pred             EEEeCCCCCceeeee------eccc-----ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE-EeeecccCeEEEEE
Q 021319          174 EVLTYPSLRPLDTVV------AHTA-----GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISF  241 (314)
Q Consensus       174 ~~~~~~~~~~~~~~~------~~~~-----~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~  241 (314)
                      ..|+.+....+..+.      .|.+     .|+++.|+.+|-.+++|.++|.+.+||++..+.+. .-.+...++..+.|
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~  279 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW  279 (703)
T ss_pred             EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence            999987654433332      2333     38999999999999999999999999998765542 22345668999999


Q ss_pred             ccCCcEEEEecCCc-eEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319          242 SHTGDYIASASEDL-FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       242 sp~~~~l~s~s~d~-~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      .+.+..=...|.|. .++|||-.+|+....+.....++.+++-|+..|+.+|.++..
T Consensus       280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~  336 (703)
T KOG2321|consen  280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSK  336 (703)
T ss_pred             cccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCc
Confidence            88755544455664 579999999999988877777999999999999999987653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=4.7e-14  Score=124.08  Aligned_cols=234  Identities=15%  Similarity=0.237  Sum_probs=153.3

Q ss_pred             CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCceeeeEEecCceEEEEEcc
Q 021319           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---GDKTVRLWDARSGKCSQQAELSGENINITYKP  118 (314)
Q Consensus        42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  118 (314)
                      ..|.+||.+...   .  ..+..+...+....|+|++. .|+..+   .+..+.+||+.+++........+......|+|
T Consensus       179 ~~l~~~d~dg~~---~--~~lt~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP  252 (429)
T PRK03629        179 YELRVSDYDGYN---Q--FVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP  252 (429)
T ss_pred             eeEEEEcCCCCC---C--EEeecCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence            367777765322   1  12345667889999999875 444332   34578999998887554444444455688999


Q ss_pred             CCCEEEEE-eCCC--cEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC-ceEEEE--eCCCCCceeeeeeccc
Q 021319          119 DGTHIAVG-NRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-GTVEVL--TYPSLRPLDTVVAHTA  192 (314)
Q Consensus       119 ~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~  192 (314)
                      ||+.|+.. ..++  .|.+||+.+.+...............|+|+++.+++.... +...+|  +....+. ..+..+..
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~  331 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGS  331 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCC
Confidence            99988865 3344  4888898776544333333456778999999988776653 444444  5544332 23333334


Q ss_pred             ceEEEEECCCCCEEEEeeCC---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCce---EEEEECCCCC
Q 021319          193 GCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF---IDISNVHTGR  266 (314)
Q Consensus       193 ~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~---v~v~~~~~~~  266 (314)
                      ......|+|+|++++..+.+   ..|.+||+.++... .+... ......+|+|||++|+.++.++.   +.++++ +|+
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~  408 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGR  408 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCC
Confidence            45678899999998876544   25888998877543 33321 22345789999999999998764   566666 455


Q ss_pred             eEEEEe-ccCccceeEEcCC
Q 021319          267 TVHQIP-CRAAMNSVEWNPK  285 (314)
Q Consensus       267 ~~~~~~-~~~~i~~v~~~~~  285 (314)
                      ....+. +.+.+...+|+|-
T Consensus       409 ~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        409 FKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CeEECccCCCCcCCcccCCC
Confidence            555554 3567899999983

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.70  E-value=3.8e-13  Score=115.19  Aligned_cols=265  Identities=19%  Similarity=0.232  Sum_probs=171.4

Q ss_pred             EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEE
Q 021319           35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI  114 (314)
Q Consensus        35 l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~  114 (314)
                      +++-..++.|.|.|.++..    ...++......-..+.++|++ .+++.++.|+.|.++|+.+++.+.+.........+
T Consensus         9 ~V~~~~~~~v~viD~~t~~----~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i   83 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNK----VVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI   83 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-S----EEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred             EEEecCCCEEEEEECCCCe----EEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence            3456678999999987532    222444433333456788875 57777889999999999999999999888888999


Q ss_pred             EEccCCCEEEEEe-CCCcEEEEEccCCeEeeeeccC--------cceeeEEeccCCCeEEEE-cCCceEEEEeCCCCCce
Q 021319          115 TYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFG--------YEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLRPL  184 (314)
Q Consensus       115 ~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~  184 (314)
                      ++++||++++++. ..+.+.++|.++.+++..+...        ..+..+..++....+++. -+.+.+.+.++...+++
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~  163 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL  163 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence            9999999998765 6889999999999888776543        234566667777766665 45699999998766554


Q ss_pred             ee-eeecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcEEEEEeee----ccc-----------Ce-----------
Q 021319          185 DT-VVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTK----LEW-----------PV-----------  236 (314)
Q Consensus       185 ~~-~~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~----~~~-----------~v-----------  236 (314)
                      .. ............|+|++++++++ ..+..|-++|..+.+.+..+..    |..           ++           
T Consensus       164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~  243 (369)
T PF02239_consen  164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI  243 (369)
T ss_dssp             EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE
T ss_pred             ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceec
Confidence            32 22334456788999999987654 5566899999887765443210    000           00           


Q ss_pred             ----------------------------EEEEEccCCcEEEEe----cCCceEEEEECCCCCeEEEEecc--CccceeEE
Q 021319          237 ----------------------------RTISFSHTGDYIASA----SEDLFIDISNVHTGRTVHQIPCR--AAMNSVEW  282 (314)
Q Consensus       237 ----------------------------~~~~~sp~~~~l~s~----s~d~~v~v~~~~~~~~~~~~~~~--~~i~~v~~  282 (314)
                                                  .-+.-||++++|...    .....|.|+|..+.+.+..+...  ..+.-++|
T Consensus       244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef  323 (369)
T PF02239_consen  244 PLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF  323 (369)
T ss_dssp             EEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred             ccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence                                        115669999999988    34488999999998777776532  34889999


Q ss_pred             cCCCCeeEEEecCCcccccccceEEecc
Q 021319          283 NPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       283 ~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      +++|+.+..+.-+.+      |.+.|||
T Consensus       324 ~~dG~~v~vS~~~~~------~~i~v~D  345 (369)
T PF02239_consen  324 NPDGKEVWVSVWDGN------GAIVVYD  345 (369)
T ss_dssp             -TTSSEEEEEEE--T------TEEEEEE
T ss_pred             CCCCCEEEEEEecCC------CEEEEEE
Confidence            999998766555542      3555655

...

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.70  E-value=1.5e-15  Score=118.94  Aligned_cols=196  Identities=23%  Similarity=0.349  Sum_probs=138.0

Q ss_pred             ecccccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           17 TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        17 ~gH~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      +.|..++++..|+. |-++|.++|-|-+..|||++.+..+. ....+-.|...|.+++|...+.++++|.|.||+||++|
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD  225 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD  225 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence            45567999999986 45789999999999999998753222 23467799999999999987778999999999999999


Q ss_pred             CCCCceeeeEEe----cCceEEEEEccC-CCEEEEEeCC-CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC
Q 021319           96 ARSGKCSQQAEL----SGENINITYKPD-GTHIAVGNRD-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        96 ~~~~~~~~~~~~----~~~~~~~~~~~~-~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      ++...-....-.    ......++|+++ -+++|+-..| ..+.+.|+|.+                             
T Consensus       226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-----------------------------  276 (364)
T KOG0290|consen  226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-----------------------------  276 (364)
T ss_pred             ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-----------------------------
Confidence            986543222111    122344555543 3344433322 23555555432                             


Q ss_pred             CceEEEEeCCCCCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEE------EEEeeecccCeEEEEEc
Q 021319          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLC------VRTFTKLEWPVRTISFS  242 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~s  242 (314)
                                 ..++..+.+|.+.|+.++|.|. ...+++++.|..+.+||+.+.-.      +..+. ....|+.+.|+
T Consensus       277 -----------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws  344 (364)
T KOG0290|consen  277 -----------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWS  344 (364)
T ss_pred             -----------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeec
Confidence                       3356677889999999999995 46799999999999999976533      11122 34578999999


Q ss_pred             c-CCcEEEEecCC
Q 021319          243 H-TGDYIASASED  254 (314)
Q Consensus       243 p-~~~~l~s~s~d  254 (314)
                      | ....++.+...
T Consensus       345 ~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  345 SSQPDWIAICFGK  357 (364)
T ss_pred             ccCCCEEEEEecC
Confidence            5 46777765543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=5.7e-16  Score=130.92  Aligned_cols=226  Identities=22%  Similarity=0.322  Sum_probs=146.9

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCCCc
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKT   90 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D~~   90 (314)
                      ..++|.||.+-|+|++|+.+|.+|+|||.|-.+.|||.-...  .+.. .-.||.+.|+++.|-|.- ..+++||+.|..
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K--llhs-I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK--LLHS-ISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc--eeee-eecccccceeEEeeeccCCCeEEEeccCcce
Confidence            457789999999999999999999999999999999975322  1222 246899999999999864 357789999999


Q ss_pred             EEEEeCCCCcee----------eeE-EecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEec
Q 021319           91 VRLWDARSGKCS----------QQA-ELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN  158 (314)
Q Consensus        91 v~iwd~~~~~~~----------~~~-~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  158 (314)
                      |+++|+...+--          +.. -.......++-.|++ +.+.+++.||+++-+|+|.+..-..... ....     
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~-~~~~-----  192 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED-CPSI-----  192 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc-ccHH-----
Confidence            999998742210          000 011223345666777 6677888999999999887532111000 0000     


Q ss_pred             cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCC-EEEEeeCCCeEEEeeCCCc--------------
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEM--------------  223 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~t~~~dg~i~vwd~~~~--------------  223 (314)
                                               +..+...--+..|+.++|... +||+|+.|-..++||.+..              
T Consensus       193 -------------------------l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p  247 (758)
T KOG1310|consen  193 -------------------------LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP  247 (758)
T ss_pred             -------------------------HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCC
Confidence                                     000001112456788888654 6888888888888883211              


Q ss_pred             ----EEEEEeee-c-----------ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE
Q 021319          224 ----LCVRTFTK-L-----------EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       224 ----~~~~~~~~-~-----------~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~  271 (314)
                          .|++.|.. |           ...+.-+.|+|+|.-|+..=..-.|+++|+..++.+..+
T Consensus       248 p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  248 PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence                12222211 1           112456789999976654444445999999887765543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=1.3e-16  Score=132.16  Aligned_cols=221  Identities=13%  Similarity=0.147  Sum_probs=181.2

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC
Q 021319           70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG  149 (314)
Q Consensus        70 ~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  149 (314)
                      ..+.+..+ +..++.|+.-|.|-.+|..+++....+.....+..+.|..+..++|++ ....+.|||- .+..++..+..
T Consensus       133 Y~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~~  209 (545)
T KOG1272|consen  133 YHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKRH  209 (545)
T ss_pred             eeeeecCC-ccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhhc
Confidence            44566655 567888999999999999999988887777767778888777777766 5567888884 44556666655


Q ss_pred             cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                      .++..+.|-|-.-.+++++..|.+...|...++.+..+..-.+.+..++-+|-+-.+-+|..+|+|.+|.......+-.+
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi  289 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI  289 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence            67777888888888888999999999999888877777666778889999999999999999999999998877777677


Q ss_pred             eecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEe
Q 021319          230 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~  293 (314)
                      ..|..+|++|++.|+|+|+||++.|..++|||++.-..++.+...-+...+++|..|.+.++-|
T Consensus       290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G  353 (545)
T KOG1272|consen  290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYG  353 (545)
T ss_pred             HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecC
Confidence            7899999999999999999999999999999999877777766556788899997665544444

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2.1e-15  Score=120.53  Aligned_cols=248  Identities=19%  Similarity=0.245  Sum_probs=166.0

Q ss_pred             cceeeecccccEEEEEECC--CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeC-
Q 021319           12 HSREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASG-   87 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~--~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~-   87 (314)
                      ..+.+.+|...++.+.|..  ..+.+.+|+.||+||+||+..+..  ...+...+|+ .+-.++..+.. .+++++|.. 
T Consensus        62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--~a~~~~~~~~~~~f~~ld~nck-~~ii~~GtE~  138 (376)
T KOG1188|consen   62 LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--SARISWTQQSGTPFICLDLNCK-KNIIACGTEL  138 (376)
T ss_pred             hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--hhheeccCCCCCcceEeeccCc-CCeEEecccc
Confidence            4567789999999999976  467899999999999999976543  3344455666 44555555433 356666643 


Q ss_pred             ---CCcEEEEeCCCCce-eeeE--EecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCe----EeeeeccCcceeeEE
Q 021319           88 ---DKTVRLWDARSGKC-SQQA--ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFK----PIHRRKFGYEVNEIA  156 (314)
Q Consensus        88 ---D~~v~iwd~~~~~~-~~~~--~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~  156 (314)
                         |-.|.+||+|..+. +...  .+...+..+.|.|+ .++|++|+.||.+.+||++...    .+..+.++..+..+.
T Consensus       139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig  218 (376)
T KOG1188|consen  139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG  218 (376)
T ss_pred             ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee
Confidence               67889999998765 3332  23455678999985 5788899999999999987652    234455667788999


Q ss_pred             eccCC-CeEEEEcCCceEEEEeCCCCCceeeeeec---------ccc-eEEEE-ECC-CCCEEEEeeC-CCeEEEeeCC-
Q 021319          157 WNMTG-EMFFLTTGNGTVEVLTYPSLRPLDTVVAH---------TAG-CYCIA-IDP-MGRYFAVGSA-DSLVSLWDIS-  221 (314)
Q Consensus       157 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---------~~~-i~~i~-~~~-~~~~l~t~~~-dg~i~vwd~~-  221 (314)
                      |...+ +.+.+-+..+...+|.+....+...+..-         ... -+-|. .+| +...+++++. -+...++-+. 
T Consensus       219 w~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~  298 (376)
T KOG1188|consen  219 WLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVD  298 (376)
T ss_pred             eecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeee
Confidence            98766 45666677788899988765433222110         000 01111 223 3445555555 3555555433 


Q ss_pred             --Cc---EEEEEeee-cccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          222 --EM---LCVRTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       222 --~~---~~~~~~~~-~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                        ++   ..+..+.+ |..-|+++.|.-.+.++.||++||.+.+|..
T Consensus       299 ~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  299 TSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence              22   22333444 5667889999999999999999999999985

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=3.6e-15  Score=134.79  Aligned_cols=243  Identities=17%  Similarity=0.241  Sum_probs=163.7

Q ss_pred             ccEEEEEECC--CCCEEEEeeCCCcEEEeecCCCCCCce-eeE---EeecCC----CCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           21 KKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKV-KDI---ELRGHA----DSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        21 ~~V~~v~~s~--~g~~l~s~~~D~~v~iw~~~~~~~~~~-~~~---~~~~h~----~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ..|+.+++--  |..++++|+.||.||||+--.....+. ...   .+.++.    +.=.-+.|....+ +|+++|.-..
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRS 1188 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeE
Confidence            4688888743  345799999999999996422211110 000   111111    1112357776655 5555566789


Q ss_pred             EEEEeCCCCceeeeEEecCceE--EEE-EccCCCEEEEEeCCCcEEEEEccCCeE---eeee-ccCc--ceeeEEeccCC
Q 021319           91 VRLWDARSGKCSQQAELSGENI--NIT-YKPDGTHIAVGNRDDELTILDVRKFKP---IHRR-KFGY--EVNEIAWNMTG  161 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~-~~~~--~~~~~~~~~~~  161 (314)
                      |||||.....+...........  +++ ..+.|+.+++|..||.+++||.|...+   +... ++..  .+..+.+.+.|
T Consensus      1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred             EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence            9999998877776665544332  232 224579999999999999999886543   2222 2222  26777777766


Q ss_pred             C-eEEEEcCCceEEEEeCCCCCce--eeeeecc--c-ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee----
Q 021319          162 E-MFFLTTGNGTVEVLTYPSLRPL--DTVVAHT--A-GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK----  231 (314)
Q Consensus       162 ~-~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~--~-~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----  231 (314)
                      - .+++++.+|.|++|+++.....  .+...|.  + ..+++.+++....+|+|+. +.|+||++...+ +..++.    
T Consensus      1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGF 1346 (1387)
T ss_pred             CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCccc
Confidence            4 4889999999999998764221  1222332  2 4899999999999999998 999999986432 222221    


Q ss_pred             ---cccCeEEEEEccCCcEEEEecCCceEEEEECCCCC
Q 021319          232 ---LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       232 ---~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~  266 (314)
                         -...+.+++|+|---.||.|+.|..|.||...+.+
T Consensus      1347 ~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence               12367999999999999999999999999876643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.8e-14  Score=124.69  Aligned_cols=222  Identities=14%  Similarity=0.149  Sum_probs=143.4

Q ss_pred             eeeecccccEEEEEECCCCCEEEEee---CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC-
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGS---VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-   89 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~---~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~-   89 (314)
                      +.+..+...+.+.+|||||+.|+..+   .+..+.+|++....   ..  .+....+.+....|+|++..++++.+.++ 
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---~~--~l~~~~~~~~~~~~SPDG~~La~~~~~~g~  266 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VR--QVASFPRHNGAPAFSPDGSKLAFALSKTGS  266 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC---eE--EccCCCCCcCCeEECCCCCEEEEEEcCCCC
Confidence            44555667899999999999988654   24578888886532   11  12222333456899998765555555555 


Q ss_pred             -cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC-CcEEEE--EccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319           90 -TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-DELTIL--DVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        90 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                       .|.+||+.++................|+|||+.|+..+.+ +...+|  |+...+...-...........|+|+|+.++
T Consensus       267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence             4888999888765443333445678899999988776653 444444  665543322122233345688999999887


Q ss_pred             EEcCC---ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCe---EEEeeCCCcEEEEEeeecccCeEEE
Q 021319          166 LTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSL---VSLWDISEMLCVRTFTKLEWPVRTI  239 (314)
Q Consensus       166 ~~~~~---g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~---i~vwd~~~~~~~~~~~~~~~~v~~~  239 (314)
                      ....+   ..+.++++.+.+. ..+.. ........|+|||++++.++.++.   +.++++. +...+.+..++..+...
T Consensus       347 ~~~~~~g~~~I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p  423 (429)
T PRK03629        347 MVSSNGGQQHIAKQDLATGGV-QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFP  423 (429)
T ss_pred             EEEccCCCceEEEEECCCCCe-EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCc
Confidence            76533   3567777765542 22221 122345789999999998887764   6677763 44456666677778888


Q ss_pred             EEcc
Q 021319          240 SFSH  243 (314)
Q Consensus       240 ~~sp  243 (314)
                      +|+|
T Consensus       424 ~Wsp  427 (429)
T PRK03629        424 AWSP  427 (429)
T ss_pred             ccCC
Confidence            8887

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.67  E-value=9.8e-15  Score=116.38  Aligned_cols=268  Identities=15%  Similarity=0.188  Sum_probs=168.2

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 021319           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ  104 (314)
Q Consensus        25 ~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~  104 (314)
                      -++|||+|+++|+++.- .+.|=|.++..     ...+.-.-+.|.-+-|..+....+.....|+.|.+|++...+.-..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq-----~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ-----LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhh-----HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence            46799999999999854 56665554311     1112222345666777766555566778899999999986654433


Q ss_pred             EE-ecCceEEEEEccCCCEEE-EEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC-------------
Q 021319          105 AE-LSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-------------  169 (314)
Q Consensus       105 ~~-~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  169 (314)
                      .. .......++|+|||+.+. +...+-.|.+|.+.+.+...-.-...-+..++|+++|++.+....             
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~  166 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK  166 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence            32 334556799999996665 566788999999977654322212222344555555554433221             


Q ss_pred             -----------------------CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE
Q 021319          170 -----------------------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (314)
Q Consensus       170 -----------------------~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~  226 (314)
                                             +..+.+|+..-.-.+..+ .-+.++..++|+|.++++++|+.|+.+|+.+.-+.+..
T Consensus       167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f  245 (447)
T KOG4497|consen  167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF  245 (447)
T ss_pred             HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence                                   111222221110011111 11246788999999999999999999998763221110


Q ss_pred             E------------------------------------------------------------Eee------ecccCeEEEE
Q 021319          227 R------------------------------------------------------------TFT------KLEWPVRTIS  240 (314)
Q Consensus       227 ~------------------------------------------------------------~~~------~~~~~v~~~~  240 (314)
                      .                                                            .++      +....+..++
T Consensus       246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la  325 (447)
T KOG4497|consen  246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA  325 (447)
T ss_pred             hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence            0                                                            000      0112355689


Q ss_pred             EccCCcEEEEecCC--ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCccc
Q 021319          241 FSHTGDYIASASED--LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       241 ~sp~~~~l~s~s~d--~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      ||+|..|+||-...  ..+.+||+..-+....+..+.+|+...|+|..+-|+.+..-.-+|
T Consensus       326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY  386 (447)
T KOG4497|consen  326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLY  386 (447)
T ss_pred             ecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEE
Confidence            99999999988665  679999998766555555677899999999888777665444444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.67  E-value=5.8e-16  Score=128.30  Aligned_cols=256  Identities=18%  Similarity=0.263  Sum_probs=191.0

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~  101 (314)
                      .-+.+.++.+|.+|+-||.-|.|-.+|..+..    ...++. -...|.++.|-.+ .+++| ...-..+.|||-. |.-
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei~-v~Etv~Dv~~LHn-eq~~A-VAQK~y~yvYD~~-GtE  202 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEIN-VMETVRDVTFLHN-EQFFA-VAQKKYVYVYDNN-GTE  202 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccce----eeeeee-hhhhhhhhhhhcc-hHHHH-hhhhceEEEecCC-CcE
Confidence            45678899999999999999999999886532    222322 2456888888765 35655 4466789999954 444


Q ss_pred             eeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCCceEEEEeCCC
Q 021319          102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS  180 (314)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  180 (314)
                      ...+........+.|.|-.-+|++++..|.++..|+..++.+..+..+ .++....-+|-...+-++..+|+|.+|.-..
T Consensus       203 lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  203 LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            444444556677899999999999999999999999998877655443 3455556677777888899999999999998


Q ss_pred             CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEE
Q 021319          181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS  260 (314)
Q Consensus       181 ~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~  260 (314)
                      .+|+..+..|.+++.+++++++|+|+||.+.|..++|||++....+.++.. ..+...++||-.|-  +..|....|.||
T Consensus       283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl--LA~~~G~~v~iw  359 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL--LALSYGDHVQIW  359 (545)
T ss_pred             cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc--eeeecCCeeeee
Confidence            999999999999999999999999999999999999999998877766654 56777888876553  334444558888


Q ss_pred             E-CCCCC-----eEEEEeccCccceeEEcCCCCe
Q 021319          261 N-VHTGR-----TVHQIPCRAAMNSVEWNPKYNL  288 (314)
Q Consensus       261 ~-~~~~~-----~~~~~~~~~~i~~v~~~~~~~~  288 (314)
                      . ...+.     +...-.+.+.|..|.|.|--..
T Consensus       360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDv  393 (545)
T KOG1272|consen  360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDV  393 (545)
T ss_pred             hhhhcCCCCCCcchhhhccCcccccceeccHHHe
Confidence            4 22322     1111123568999999994333

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=3.8e-14  Score=110.63  Aligned_cols=157  Identities=18%  Similarity=0.334  Sum_probs=112.9

Q ss_pred             CceEEEEEccCCCEEEEEeC----------CCcEEEEEccC-CeEeeeecc--CcceeeEEeccCCCeEEEEc--CCceE
Q 021319          109 GENINITYKPDGTHIAVGNR----------DDELTILDVRK-FKPIHRRKF--GYEVNEIAWNMTGEMFFLTT--GNGTV  173 (314)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~g~~  173 (314)
                      .....+.|+++|..|++-..          -+...+|-++. ..+......  ..++.+++|+|+++.+++..  .+..+
T Consensus         6 ~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v   85 (194)
T PF08662_consen    6 VDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV   85 (194)
T ss_pred             cceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence            34566888888887765443          12344555432 223333332  34699999999999887654  45689


Q ss_pred             EEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319          174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      .+|+.. .+++..+  +...++.+.|+|+|+++++++.+   |.+.+||+++.+++.++..  ..+..++|+|+|++|++
T Consensus        86 ~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   86 TLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEE
Confidence            999985 4444444  34567899999999999998754   6799999999888877643  24789999999999999


Q ss_pred             ecC------CceEEEEECCCCCeEEEE
Q 021319          251 ASE------DLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       251 ~s~------d~~v~v~~~~~~~~~~~~  271 (314)
                      ++.      |..++||+. .|+.+.+.
T Consensus       161 a~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             EEeccceeccccEEEEEe-cCeEeEec
Confidence            975      678899997 56766554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=6.1e-15  Score=124.48  Aligned_cols=228  Identities=15%  Similarity=0.246  Sum_probs=148.7

Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE-eCCCCceeeeEEecCce--EEEEEc-------cCCCEEEEEeCCCcEE
Q 021319           64 GHADSVDQLCWDPKHADLIATASGDKTVRLW-DARSGKCSQQAELSGEN--INITYK-------PDGTHIAVGNRDDELT  133 (314)
Q Consensus        64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw-d~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~l~~~~~d~~i~  133 (314)
                      .|...|.++.|.... .. ...+.|..+.+| |+.+... .........  ..+..-       .....+++++.||.+.
T Consensus        12 r~~e~vc~v~w~~~e-ei-~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~   88 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNE-EI-YFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV   88 (737)
T ss_pred             ccceeEEeecccccc-eE-EEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence            456667788887653 34 445555555554 5543322 111111111  011111       1234688888999998


Q ss_pred             EEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC
Q 021319          134 ILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (314)
Q Consensus       134 i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d  212 (314)
                      +.+-.. +.... ..+...+.+-.|+|+|.-++++++||.+++|.-...- ..++.....+|+|++|.|+..-++-+. .
T Consensus        89 il~k~~-rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-RStl~Q~~~~v~c~~W~p~S~~vl~c~-g  165 (737)
T KOG1524|consen   89 ILNKSA-RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-RSTVVQNEESIRCARWAPNSNSIVFCQ-G  165 (737)
T ss_pred             Eecccc-hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-HHHHhhcCceeEEEEECCCCCceEEec-C
Confidence            876321 11111 2234567778899999999999999999999864321 123345677899999999876544332 3


Q ss_pred             CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEE
Q 021319          213 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       213 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~  292 (314)
                      +.+.+=-+.....+-..+.|+.-|.+++|+|..+.++||++|...+|||....-+...-.+.-+|++|+|+|+ +.++.+
T Consensus       166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~  244 (737)
T KOG1524|consen  166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLW  244 (737)
T ss_pred             CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeee
Confidence            3344444444444556788999999999999999999999999999999744333333456678999999999 788888


Q ss_pred             ecCCcc
Q 021319          293 GDDKNK  298 (314)
Q Consensus       293 ~~d~~~  298 (314)
                      |-..-+
T Consensus       245 S~nt~R  250 (737)
T KOG1524|consen  245 SYNTAR  250 (737)
T ss_pred             eeeeee
Confidence            865433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=2.5e-13  Score=119.58  Aligned_cols=218  Identities=19%  Similarity=0.240  Sum_probs=140.4

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEE-EeCCCcEEEEE-
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILD-  136 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d-  136 (314)
                      +..+...+...+|+|++. .|+..+.   ...|.+||+.+++........+......|+|||+.|+. ...++...+|. 
T Consensus       191 l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            446778889999999864 5555543   24599999998876554444455567899999998875 56677666664 


Q ss_pred             -ccCCeEeeee-ccCcceeeEEeccCCCeEEEEcC-CceEEEEeC--CCCCceeeeeecccceEEEEECCCCCEEEEeeC
Q 021319          137 -VRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTG-NGTVEVLTY--PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA  211 (314)
Q Consensus       137 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~--~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~  211 (314)
                       +.... .... ..........|+|+|+.+++.+. .|...+|.+  .... ...+..+.......+|+|+|++++..+.
T Consensus       270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEc
Confidence             43332 2222 12223456789999998776553 455555544  3332 2222222223345789999999987766


Q ss_pred             CC---eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCc---eEEEEECCCCCeEEEEe-ccCccceeEEcC
Q 021319          212 DS---LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FIDISNVHTGRTVHQIP-CRAAMNSVEWNP  284 (314)
Q Consensus       212 dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~---~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~  284 (314)
                      ++   .|.+||+.++.... +... ......+|+|+|++|+.++.++   .+.+.+. .|+....+. ..+.+...+|+|
T Consensus       348 ~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        348 VGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             cCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence            54   59999998775433 3222 2235679999999999887653   3555555 466555554 346788899998


Q ss_pred             C
Q 021319          285 K  285 (314)
Q Consensus       285 ~  285 (314)
                      -
T Consensus       425 ~  425 (427)
T PRK02889        425 F  425 (427)
T ss_pred             C
Confidence            4

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=7.7e-14  Score=110.83  Aligned_cols=223  Identities=17%  Similarity=0.281  Sum_probs=168.2

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC-
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-   98 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~-   98 (314)
                      ..+|+|-+|++|+..+|.+-....|.||...... .......+..|...|+.+.|.|. .+.|++++.|..-.+|.... 
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-~w~~~htls~Hd~~vtgvdWap~-snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-LWEPAHTLSEHDKIVTGVDWAPK-SNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCC-CceeceehhhhCcceeEEeecCC-CCceeEccCCCCccccccCCC
Confidence            5789999999999999999999999999875432 24455678899999999999997 46889999999999999844 


Q ss_pred             Cceee---eEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe-----eeeccCcceeeEEeccCCCeEEEEcCC
Q 021319           99 GKCSQ---QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        99 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      +....   .+.+.....++.|+|..+.+++|+....|.|+-.+...-=     -.+.....+.++.|+|++-.+++++.|
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence            43322   3345667778999999999999999999999876543211     111223568999999999999999999


Q ss_pred             ceEEEEeCC--------------CCCceee----eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE-EEEEeee
Q 021319          171 GTVEVLTYP--------------SLRPLDT----VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTK  231 (314)
Q Consensus       171 g~~~~~~~~--------------~~~~~~~----~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~  231 (314)
                      +..+++...              ...|+..    +..-.+.+..+.|+|+|..|+-.+.|..+.+=|-.... .+++...
T Consensus       168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~  247 (361)
T KOG1523|consen  168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT  247 (361)
T ss_pred             cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh
Confidence            999998531              1112222    22335678999999999999999999999999976543 3444433


Q ss_pred             cccCeEEEEEccC
Q 021319          232 LEWPVRTISFSHT  244 (314)
Q Consensus       232 ~~~~v~~~~~sp~  244 (314)
                      ...|..++.|-.+
T Consensus       248 ~~lP~ls~~~ise  260 (361)
T KOG1523|consen  248 AQLPLLSVSWISE  260 (361)
T ss_pred             ccCCceeeEeecC
Confidence            3467777777543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.4e-13  Score=121.53  Aligned_cols=233  Identities=17%  Similarity=0.238  Sum_probs=151.0

Q ss_pred             CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCceeeeEEecCceEEEEEcc
Q 021319           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKP  118 (314)
Q Consensus        42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  118 (314)
                      ..|.+||.+...   .  ..+..+...+....|+|++. .|+..+.   +..|.+||+.+++........+......|+|
T Consensus       184 ~~l~i~D~~g~~---~--~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSDGYN---P--QTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCCCCC---c--eEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence            368888875321   1  23456777889999999864 6665553   3469999998887654433444445688999


Q ss_pred             CCCEEEE-EeCCC--cEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC-Cce--EEEEeCCCCCceeeeeeccc
Q 021319          119 DGTHIAV-GNRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NGT--VEVLTYPSLRPLDTVVAHTA  192 (314)
Q Consensus       119 ~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~~~~~~~~~~~~~~~~~~~  192 (314)
                      ||+.|+. .+.++  .|.+||+.+.+...............|+|+++.+++... .|.  ++.++....+. ..+..+..
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~  336 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGN  336 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCC
Confidence            9998864 34444  588899877654332222223456789999998877653 344  55556544432 22222333


Q ss_pred             ceEEEEECCCCCEEEEeeCCC---eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC---ceEEEEECCCCC
Q 021319          193 GCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGR  266 (314)
Q Consensus       193 ~i~~i~~~~~~~~l~t~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~~~  266 (314)
                      .....+|+|+|++++..+.++   .|.+||+.++... .+.... .....+|+|||++|+..+.+   ..+.+++.. ++
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~-~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~  413 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS-LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GR  413 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence            345689999999988765443   5999999776543 333222 34457899999998877664   457777774 44


Q ss_pred             eEEEEec-cCccceeEEcC
Q 021319          267 TVHQIPC-RAAMNSVEWNP  284 (314)
Q Consensus       267 ~~~~~~~-~~~i~~v~~~~  284 (314)
                      ..+.+.. .+.+...+|+|
T Consensus       414 ~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        414 VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ceEEcccCCCCCCCCccCC
Confidence            5555543 45688889987

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=8.4e-14  Score=122.93  Aligned_cols=223  Identities=15%  Similarity=0.142  Sum_probs=144.0

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCC---CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D---~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      .+.+..|...+.+..|+|||+.|+..+.+   ..|.+|++....   ..  .+...........|+|++..++++.+.++
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---~~--~l~~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---RE--LVASFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---EE--EeccCCCCccCceECCCCCEEEEEEeCCC
Confidence            34566777789999999999999988743   468899986532   11  23334444557899998766666666666


Q ss_pred             --cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CCc--EEEEEccCCeEeeeeccCcceeeEEeccCCCeE
Q 021319           90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        90 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                        .|.+||+.++...............+|+|||+.|+..+. ++.  +.++|+...+...-...+......+|+|+++.+
T Consensus       271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I  350 (433)
T PRK04922        271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI  350 (433)
T ss_pred             CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence              588999988875443332233356889999998887653 444  555666554432211222234467999999998


Q ss_pred             EEEcCCc---eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC---CeEEEeeCCCcEEEEEeeecccCeEE
Q 021319          165 FLTTGNG---TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRT  238 (314)
Q Consensus       165 ~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~  238 (314)
                      +....++   .+.+|+..+.+.. .+. +........|+|||++++..+.+   +.+.++++... ..+.+..+...+..
T Consensus       351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~  427 (433)
T PRK04922        351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVRE  427 (433)
T ss_pred             EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCC
Confidence            8765432   5788887655433 222 22234567899999987766553   35777787543 34445444556677


Q ss_pred             EEEcc
Q 021319          239 ISFSH  243 (314)
Q Consensus       239 ~~~sp  243 (314)
                      .+|+|
T Consensus       428 p~wsp  432 (433)
T PRK04922        428 PAWSP  432 (433)
T ss_pred             CccCC
Confidence            77876

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=5.6e-13  Score=117.85  Aligned_cols=234  Identities=14%  Similarity=0.184  Sum_probs=151.6

Q ss_pred             CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCceeeeEEecCceEEEEEcc
Q 021319           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---GDKTVRLWDARSGKCSQQAELSGENINITYKP  118 (314)
Q Consensus        42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  118 (314)
                      ..|.+||.+..   ..  ..+..|...+....|+|++. .|+..+   .+..|.+||+.+++........+......|+|
T Consensus       182 ~~l~~~d~dg~---~~--~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP  255 (435)
T PRK05137        182 KRLAIMDQDGA---NV--RYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP  255 (435)
T ss_pred             eEEEEECCCCC---Cc--EEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC
Confidence            36667766432   11  23557788899999999865 555544   35789999998887654444445556788999


Q ss_pred             CCCEEEE-EeCCCc--EEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC-Cc--eEEEEeCCCCCceeeeeeccc
Q 021319          119 DGTHIAV-GNRDDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTA  192 (314)
Q Consensus       119 ~~~~l~~-~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~~  192 (314)
                      ||+.|+. ...++.  |.++|+...+...-...........|+|+++.+++... +|  .+++++....+. ..+..+..
T Consensus       256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~  334 (435)
T PRK05137        256 DGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGG  334 (435)
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCC
Confidence            9998764 445554  66778876554332222333556899999998877653 33  566777654432 33333344


Q ss_pred             ceEEEEECCCCCEEEEeeCC---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC------ceEEEEECC
Q 021319          193 GCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED------LFIDISNVH  263 (314)
Q Consensus       193 ~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d------~~v~v~~~~  263 (314)
                      ......|+|+|+.++....+   ..|.+||+.... .+.+.. ...+...+|+|||++|+..+.+      ..+.+.++.
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence            56678899999998876544   258888875443 233322 2346778999999998876543      257777876


Q ss_pred             CCCeEEEEeccCccceeEEcCC
Q 021319          264 TGRTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       264 ~~~~~~~~~~~~~i~~v~~~~~  285 (314)
                      .+.. ..+...+.+...+|+|-
T Consensus       413 g~~~-~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        413 GRNE-REVPTPGDASDPAWSPL  433 (435)
T ss_pred             CCce-EEccCCCCccCcccCCC
Confidence            5443 45544455788899874

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.64  E-value=2.8e-15  Score=128.83  Aligned_cols=202  Identities=25%  Similarity=0.411  Sum_probs=146.3

Q ss_pred             cccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCc---eeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           20 KKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        20 ~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      ...|++++|.| |.++|+.++.||.|++|.+...+..+   .+...+.+|.+.|..+.|+|-..++|++++.|.+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            35799999998 45789999999999999997654332   334568899999999999999889999999999999999


Q ss_pred             CCCCcee-eeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe-Eeeeecc--CcceeeEEeccCCCeEEEEcC--
Q 021319           96 ARSGKCS-QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKF--GYEVNEIAWNMTGEMFFLTTG--  169 (314)
Q Consensus        96 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--  169 (314)
                      +.++... +...+...++.++|+|+|+.+++.+.|+++++|..++.. ++...+.  +..---+.|..+|.++++.+-  
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            9987643 333456778899999999999999999999999998653 3333222  233445678888888877653  


Q ss_pred             --CceEEEEeCCCC--Cceeeeeeccc-ceEEEEECCCC-CEEEEeeCCCeEEEeeCC
Q 021319          170 --NGTVEVLTYPSL--RPLDTVVAHTA-GCYCIAIDPMG-RYFAVGSADSLVSLWDIS  221 (314)
Q Consensus       170 --~g~~~~~~~~~~--~~~~~~~~~~~-~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~  221 (314)
                        ...+.+|+.+..  .++.+...... .+.--.+++|. .+|++|-.|..|.+|.+.
T Consensus       787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence              356666665432  23332211111 11111245554 457788889999999874

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.3e-13  Score=121.33  Aligned_cols=206  Identities=16%  Similarity=0.153  Sum_probs=133.6

Q ss_pred             CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC---CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      ..|.++|...................+|+|||+.|+..+.+   ..|.+||+.+.+...-..........+|+|+++.++
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            45677777443322222334445678999999999876643   349999998765443222333456789999999887


Q ss_pred             E-EcCCceEEEEeC--CCCCceeeeeecccceEEEEECCCCCEEEEee-CCCeEEEeeC--CCcEEEEEeeecccCeEEE
Q 021319          166 L-TTGNGTVEVLTY--PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDI--SEMLCVRTFTKLEWPVRTI  239 (314)
Q Consensus       166 ~-~~~~g~~~~~~~--~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~  239 (314)
                      + ...+|...+|.+  .... ...+..+........|+|||+.|+..+ .+|...+|.+  ..+.. ..+..........
T Consensus       256 ~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~  333 (427)
T PRK02889        256 VALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSP  333 (427)
T ss_pred             EEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCce
Confidence            5 456666666654  3322 334444444456788999999877554 3466677755  33332 2222122223457


Q ss_pred             EEccCCcEEEEecCCc---eEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319          240 SFSHTGDYIASASEDL---FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       240 ~~sp~~~~l~s~s~d~---~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      +|||+|++|+..+.++   .|.+||+.+++.. .+.........+|+|++++|++++.++.
T Consensus       334 ~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g  393 (427)
T PRK02889        334 RISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQGG  393 (427)
T ss_pred             EECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecCC
Confidence            8999999999877654   6999999887654 3333334578899999999999987764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=7.7e-14  Score=118.79  Aligned_cols=239  Identities=13%  Similarity=0.179  Sum_probs=167.5

Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEE-ccCCCEEEEEeCCCcEEEEEccCCeE
Q 021319           64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY-KPDGTHIAVGNRDDELTILDVRKFKP  142 (314)
Q Consensus        64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~  142 (314)
                      +|..+-+.+..+|++..++++|-.--.|++||+.+-.....-.+...++.+.. +.|-..++.-..|.+|.+...--  .
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~  126 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R  126 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence            67788889999999887888888899999999987665555555555555432 22323333333444444432111  1


Q ss_pred             eeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC
Q 021319          143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (314)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~  222 (314)
                      ..+...+.....+.++.-.--+++++....++.+++..++.+..+....++++++.+++-..+|++|+.+|.|..||.+.
T Consensus       127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~  206 (703)
T KOG2321|consen  127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD  206 (703)
T ss_pred             eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence            12222233344455554444455566667788889998888888877778999999999999999999999999999987


Q ss_pred             cEEEEEeee------cc-----cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc--CccceeEEcCCCCee
Q 021319          223 MLCVRTFTK------LE-----WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--AAMNSVEWNPKYNLL  289 (314)
Q Consensus       223 ~~~~~~~~~------~~-----~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~--~~i~~v~~~~~~~~l  289 (314)
                      -..+.++..      +.     -.|++++|+.+|-.++.|+.+|.+.++|+.+.+++....|.  -+|..+.|.+.+..=
T Consensus       207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~  286 (703)
T KOG2321|consen  207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN  286 (703)
T ss_pred             hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence            655444421      21     24899999999999999999999999999999998876664  479999999863222


Q ss_pred             EEEecCCcccccccceEEeccc
Q 021319          290 AYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       290 a~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      ...+-|       .-.+|||+=
T Consensus       287 ~v~S~D-------k~~~kiWd~  301 (703)
T KOG2321|consen  287 KVVSMD-------KRILKIWDE  301 (703)
T ss_pred             eEEecc-------hHHhhhccc
Confidence            223333       347888873

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.63  E-value=3.9e-14  Score=119.64  Aligned_cols=201  Identities=19%  Similarity=0.278  Sum_probs=137.7

Q ss_pred             CCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC
Q 021319           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG  109 (314)
Q Consensus        30 ~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~  109 (314)
                      +.+--++.|=.-|.|.+.+.......+....+..-.+..|+++.|-|.+...++.+-.+|.+.++|...-       ...
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~~  255 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CGA  255 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-------ccC
Confidence            4455577776677777776532111110000111124679999999988888888999999999987211       011


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee
Q 021319          110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV  188 (314)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  188 (314)
                      ..-+....+++..+.+....+.      .+..|+.+.. ....++..+|+++|.++++.+.||.++++++...+.+..+.
T Consensus       256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk  329 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK  329 (636)
T ss_pred             CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH
Confidence            1111222344544444332111      1112222221 22368888999999999999999999999998776555555


Q ss_pred             ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc
Q 021319          189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH  243 (314)
Q Consensus       189 ~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp  243 (314)
                      ..-++..|++|+|||+++++|+.|..|.||.+...+.+..-.+|+..|+.|+|.|
T Consensus       330 SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  330 SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            5557899999999999999999999999999999999988899999999999983

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.62  E-value=1.2e-14  Score=112.45  Aligned_cols=237  Identities=14%  Similarity=0.120  Sum_probs=150.9

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-----CC---CEEEEEeCCC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-----HA---DLIATASGDK   89 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~---~~l~s~~~D~   89 (314)
                      .|...|+.++--|+ ..+.+=+.|+.+.+|++.-..       -..-|+-.++.+.|.+.     ..   .+++.-+...
T Consensus        54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~-------~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgs  125 (323)
T KOG0322|consen   54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA-------FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGS  125 (323)
T ss_pred             hccceeeceeecCC-cchhhcCCCceEEEEEccCcc-------eEEEeeeeccccccccceeccCCCcchhheecCCccc
Confidence            35778999988886 678999999999999986411       12234444555544432     10   1111111100


Q ss_pred             c-EEEEeCCCCceeeeEE---e--cCceEEEEEcc-C--CCEEEEEeCCCcEEEEEccCCeEeee-----------eccC
Q 021319           90 T-VRLWDARSGKCSQQAE---L--SGENINITYKP-D--GTHIAVGNRDDELTILDVRKFKPIHR-----------RKFG  149 (314)
Q Consensus        90 ~-v~iwd~~~~~~~~~~~---~--~~~~~~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~-----------~~~~  149 (314)
                      . +.+=|......+....   .  .+...+..+.. .  .-++++|..+|.+.+||+.+...+..           ..+.
T Consensus       126 de~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~  205 (323)
T KOG0322|consen  126 DETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK  205 (323)
T ss_pred             chhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc
Confidence            0 1111111111111110   0  11122222111 2  23567889999999999987532211           2244


Q ss_pred             cceeeEEeccCCCeEEEEcCCceEEEEeCCCCC---ce-eeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE
Q 021319          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR---PL-DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (314)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~  225 (314)
                      .++.++.+.+.-+.=+.++.+..+..|.+....   ++ .+......++..+.+-||++.+||++=|+.||||..+++..
T Consensus       206 qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p  285 (323)
T KOG0322|consen  206 QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP  285 (323)
T ss_pred             CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc
Confidence            567777776555555566666777777664321   11 12223445688999999999999999999999999999999


Q ss_pred             EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          226 VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       226 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      +..++.|...|.+++|+|+...+|+||+|..|.+|++
T Consensus       286 LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  286 LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999999999985

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.62  E-value=2.2e-14  Score=113.85  Aligned_cols=194  Identities=19%  Similarity=0.241  Sum_probs=153.8

Q ss_pred             cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe---Eeee-eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC-C-
Q 021319          108 SGENINITYKPDGTHIAVGNRDDELTILDVRKFK---PIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-L-  181 (314)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~-  181 (314)
                      ...+.+.+|++|+..++++.....+.||.....+   +.+. .++...++.+.|.|..+.++.+..|.+-++|...+ . 
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            4567789999999999999999999999877654   3444 35678899999999999999999999999998843 2 


Q ss_pred             -CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE----EEEeeecccCeEEEEEccCCcEEEEecCCce
Q 021319          182 -RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC----VRTFTKLEWPVRTISFSHTGDYIASASEDLF  256 (314)
Q Consensus       182 -~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~  256 (314)
                       ++.-.+..++...+++.|+|.++.||+|+.-..|.||-.+...-    .+.-+.+...|.+++|+|++-+|+.||.|++
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence             35555667889999999999999999999999999998754311    1112345678999999999999999999999


Q ss_pred             EEEEECC-----C-------------CCeEEEE-eccCccceeEEcCCCCeeEEEecCCccccc
Q 021319          257 IDISNVH-----T-------------GRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQA  301 (314)
Q Consensus       257 v~v~~~~-----~-------------~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~d~~~~~~  301 (314)
                      ++|+..-     +             |.+..++ ...+-+..|.|+|+|+.||+.+.|...+..
T Consensus       170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            9998742     1             0111222 224568999999999999999999876643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1e-13  Score=106.28  Aligned_cols=158  Identities=16%  Similarity=0.210  Sum_probs=122.2

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEEccCCe----------Eeee-eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC
Q 021319          112 INITYKPDGTHIAVGNRDDELTILDVRKFK----------PIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS  180 (314)
Q Consensus       112 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  180 (314)
                      .+-+++|.++++++|..+|.|.++.++...          ++.. ..+..++..++|+   +.++..+++|.++-|.+..
T Consensus        14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gdG~V~gw~W~E   90 (325)
T KOG0649|consen   14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGDGLVYGWEWNE   90 (325)
T ss_pred             HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccCceEEEeeehh
Confidence            345688999999999999999999886421          1222 3345677888876   3455566679999998753


Q ss_pred             CCc------eee--ee-----ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE
Q 021319          181 LRP------LDT--VV-----AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY  247 (314)
Q Consensus       181 ~~~------~~~--~~-----~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  247 (314)
                      ...      +-.  ..     ..-.+|+++.++|...-++.++.|+.+.-||+++++...++.+|..-+.++.--.....
T Consensus        91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q  170 (325)
T KOG0649|consen   91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ  170 (325)
T ss_pred             hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence            211      111  11     12246899999998888888889999999999999999999999999999988667778


Q ss_pred             EEEecCCceEEEEECCCCCeEEEEe
Q 021319          248 IASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      ++||++||.+++||..+++.+..+.
T Consensus       171 ilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  171 ILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             eeecCCCccEEEEeccccceeEEec
Confidence            8899999999999999999887764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=4e-13  Score=118.78  Aligned_cols=222  Identities=13%  Similarity=0.113  Sum_probs=143.6

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeC---CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~---D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      .+.++.|...+.+..|+|||+.|+..+.   +..|.+|+++.+.   .  ..+..+.+.+....|+|++..++++.+.++
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---~--~~l~~~~g~~~~~~~SPDG~~la~~~~~~g  268 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---R--ELVGNFPGMTFAPRFSPDGRKVVMSLSQGG  268 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---E--EEeecCCCcccCcEECCCCCEEEEEEecCC
Confidence            3556778889999999999999888764   4689999986532   1  234456667788899998766666777776


Q ss_pred             c--EEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CC--cEEEEEccCCeEeeeeccCcceeeEEeccCCCeE
Q 021319           90 T--VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        90 ~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      .  |.+||+.++................|+|||+.|+..+. ++  .|.++|+...+...-...........|+|+++.+
T Consensus       269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence            6  56668887765443332333445889999998887663 33  4777787654432222223345567899999998


Q ss_pred             EEEcCC---ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC------CeEEEeeCCCcEEEEEeeecccC
Q 021319          165 FLTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD------SLVSLWDISEMLCVRTFTKLEWP  235 (314)
Q Consensus       165 ~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d------g~i~vwd~~~~~~~~~~~~~~~~  235 (314)
                      +....+   ..+.+++..... ...+. ....+....|+|||++++..+.+      ..+.++|+..... ..+. ....
T Consensus       349 a~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~  424 (435)
T PRK05137        349 AFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGD  424 (435)
T ss_pred             EEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCC
Confidence            876532   356666654332 22222 22346678999999987765443      2577778765433 3333 2334


Q ss_pred             eEEEEEcc
Q 021319          236 VRTISFSH  243 (314)
Q Consensus       236 v~~~~~sp  243 (314)
                      +..-+|+|
T Consensus       425 ~~~p~Wsp  432 (435)
T PRK05137        425 ASDPAWSP  432 (435)
T ss_pred             ccCcccCC
Confidence            55667766

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.61  E-value=2.5e-13  Score=124.81  Aligned_cols=215  Identities=18%  Similarity=0.247  Sum_probs=149.2

Q ss_pred             eeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-------eeeeEE-ecCceEEEEEccCCCEEEEEeCC
Q 021319           58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-------CSQQAE-LSGENINITYKPDGTHIAVGNRD  129 (314)
Q Consensus        58 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d  129 (314)
                      ....+..|+..|..++.++....+++|||.||+||+||.+.-.       +..+.. .......+.+.+.+..+|+++.|
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence            3456778999999999998877899999999999999986422       222222 33455678888999999999999


Q ss_pred             CcEEEEEccCCeE-------eeee---ccCcceeeEEeccC-CC-eEEEEcCCceEEEEeCCCCCceeeee--ecccceE
Q 021319          130 DELTILDVRKFKP-------IHRR---KFGYEVNEIAWNMT-GE-MFFLTTGNGTVEVLTYPSLRPLDTVV--AHTAGCY  195 (314)
Q Consensus       130 ~~i~i~d~~~~~~-------~~~~---~~~~~~~~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~  195 (314)
                      |.+.+.++.....       ....   +.+.-+..-++... +. .++.+...+.+..|+.........+.  ...+.|+
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence            9999998865211       0111   11122222333222 22 56777888999999987655443332  2345699


Q ss_pred             EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-ecccCeEEEEEccCC---cEEEEec--CCceEEEEECCCCCeEE
Q 021319          196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTG---DYIASAS--EDLFIDISNVHTGRTVH  269 (314)
Q Consensus       196 ~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~sp~~---~~l~s~s--~d~~v~v~~~~~~~~~~  269 (314)
                      +++.+|-+.++++|...|.+.+||++=...+.... .+..++..+..+|-.   ...++++  ..+.|.+|++.+|..-.
T Consensus      1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred             EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence            99999999999999999999999997554444332 334577777777653   4555554  46789999999985554


Q ss_pred             EEe
Q 021319          270 QIP  272 (314)
Q Consensus       270 ~~~  272 (314)
                      .+.
T Consensus      1280 vl~ 1282 (1431)
T KOG1240|consen 1280 VLW 1282 (1431)
T ss_pred             EEE
Confidence            443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.61  E-value=5.2e-12  Score=108.26  Aligned_cols=244  Identities=17%  Similarity=0.187  Sum_probs=153.4

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      -..+.|+|||+++..++.|+.|.++|+.+..  .+.  +++. ......+++++++..++++.-.++.+.++|..+.+.+
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~--~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v  113 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVA--TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV  113 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEE--EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEE--EEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence            3457799999999999999999999997643  222  2332 2345778999987545556667999999999998887


Q ss_pred             eeEEec--------CceEEEEEccCCCEEEEEeC-CCcEEEEEccCCeEe--eeeccCcceeeEEeccCCCeEEEE-cCC
Q 021319          103 QQAELS--------GENINITYKPDGTHIAVGNR-DDELTILDVRKFKPI--HRRKFGYEVNEIAWNMTGEMFFLT-TGN  170 (314)
Q Consensus       103 ~~~~~~--------~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~  170 (314)
                      +.....        .....+..+|....+++.-. .+.+.+.|....+++  ..++.+.......|.|++++++++ ..+
T Consensus       114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s  193 (369)
T PF02239_consen  114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS  193 (369)
T ss_dssp             EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred             eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc
Confidence            766543        23345666788886666555 477888887765544  344556667888999999987664 444


Q ss_pred             ceEEEEeCCCCCceee-------------------------------------------------------eeecccceE
Q 021319          171 GTVEVLTYPSLRPLDT-------------------------------------------------------VVAHTAGCY  195 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~i~  195 (314)
                      +.+.+++....+....                                                       +..... ..
T Consensus       194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~-gl  272 (369)
T PF02239_consen  194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG-GL  272 (369)
T ss_dssp             TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS-S-
T ss_pred             ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC-cc
Confidence            5555555443221111                                                       111111 13


Q ss_pred             EEEECCCCCEEEEe----eCCCeEEEeeCCCcEEEEEeeecc-cCeEEEEEccCCcEEEEecCC--ceEEEEECCCCCeE
Q 021319          196 CIAIDPMGRYFAVG----SADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASED--LFIDISNVHTGRTV  268 (314)
Q Consensus       196 ~i~~~~~~~~l~t~----~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~s~d--~~v~v~~~~~~~~~  268 (314)
                      -+..+|+++++.+.    ...+.|.++|.++.+.++++.... ..+..+.|+++|+++..+..+  +.|.|+|..|.+.+
T Consensus       273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence            45669999999887    445799999999998877775332 248889999999977766554  47999999999998


Q ss_pred             EEEe
Q 021319          269 HQIP  272 (314)
Q Consensus       269 ~~~~  272 (314)
                      ..++
T Consensus       353 ~~i~  356 (369)
T PF02239_consen  353 KRIP  356 (369)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8876

...

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.61  E-value=2.4e-15  Score=132.80  Aligned_cols=243  Identities=19%  Similarity=0.284  Sum_probs=170.2

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      +...+.||.+.|+.++.+....+++++|.|+.||+|.+...    .+...+.||.++|++++|+|-.     +.+.||++
T Consensus       224 ~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~----~pvsvLrghtgavtaiafsP~~-----sss~dgt~  294 (1113)
T KOG0644|consen  224 CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG----APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTC  294 (1113)
T ss_pred             hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC----chHHHHhccccceeeeccCccc-----cCCCCCce
Confidence            34557899999999999999999999999999999988652    2333578999999999999852     78899999


Q ss_pred             EEEeCCCCcee---eeEEe--cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC-CeEE
Q 021319           92 RLWDARSGKCS---QQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-EMFF  165 (314)
Q Consensus        92 ~iwd~~~~~~~---~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  165 (314)
                      ++||.+-.-..   .....  ......+.+...+.-+.+++.|+.-..|.+........     .+..+..+.+- ...+
T Consensus       295 ~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~-----~lif~t~ssd~~~~~~  369 (1113)
T KOG0644|consen  295 RIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSN-----LLIFVTRSSDLSSIVV  369 (1113)
T ss_pred             EeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhcc-----ceEEEeccccccccce
Confidence            99998711110   11111  12223455666677778888888776665432110000     00001111111 2223


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCE-EEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  244 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~  244 (314)
                      ++-.+-.+.+|++..+.....+.+|...++.+.++|-+.. ..+++.||...|||+-.+..++.+......+...+||++
T Consensus       370 ~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd  449 (1113)
T KOG0644|consen  370 TARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD  449 (1113)
T ss_pred             eeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC
Confidence            3333445667777777777778899999999999996654 558899999999999888777766655667888899999


Q ss_pred             CcEEEEecCCceEEEEECCCCCeE
Q 021319          245 GDYIASASEDLFIDISNVHTGRTV  268 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~~~~~~  268 (314)
                      |..++....-|.+.+.....++..
T Consensus       450 gts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  450 GTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             CceEecCCCCCceEEeccCCCccc
Confidence            999988777788888887665543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.61  E-value=3.9e-11  Score=102.78  Aligned_cols=269  Identities=17%  Similarity=0.267  Sum_probs=171.4

Q ss_pred             EEEeeCC----CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC----CCcEEEEeCCC--Cceee-
Q 021319           35 LASGSVD----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG----DKTVRLWDARS--GKCSQ-  103 (314)
Q Consensus        35 l~s~~~D----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----D~~v~iwd~~~--~~~~~-  103 (314)
                      ++.|++.    +.|.+|.++... +................++++|++ ++|.+...    ++.|..|.+..  +.... 
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~-g~l~~~~~~~~~~~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~   79 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEET-GTLTLVQTVAEGENPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL   79 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTT-TEEEEEEEEEESSSECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCC-CCceEeeeecCCCCCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence            3445554    688888885433 223222222233445668888875 56666665    57888887765  34332 


Q ss_pred             -eEE-ecCceEEEEEccCCCEEEEEe-CCCcEEEEEccCC-eEeee---e-----------ccCcceeeEEeccCCCeEE
Q 021319          104 -QAE-LSGENINITYKPDGTHIAVGN-RDDELTILDVRKF-KPIHR---R-----------KFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus       104 -~~~-~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~---~-----------~~~~~~~~~~~~~~~~~~~  165 (314)
                       ... .......++++|++++|+++. .++.+.++++... .....   .           +......++.++|+++.++
T Consensus        80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~  159 (345)
T PF10282_consen   80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY  159 (345)
T ss_dssp             EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred             eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence             222 234456789999999998876 5888999998763 22111   1           1234567899999999777


Q ss_pred             EE-cCCceEEEEeCCCCC-ce---eeee-ecccceEEEEECCCCCEEEE-eeCCCeEEEeeCC--Cc--EEEEEeeec--
Q 021319          166 LT-TGNGTVEVLTYPSLR-PL---DTVV-AHTAGCYCIAIDPMGRYFAV-GSADSLVSLWDIS--EM--LCVRTFTKL--  232 (314)
Q Consensus       166 ~~-~~~g~~~~~~~~~~~-~~---~~~~-~~~~~i~~i~~~~~~~~l~t-~~~dg~i~vwd~~--~~--~~~~~~~~~--  232 (314)
                      +. .+...+.+|++.... .+   ..+. ....++..++|+|+++++.+ .-.++.|.++++.  ++  +.++.+...  
T Consensus       160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE  239 (345)
T ss_dssp             EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred             EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence            65 466789999886544 12   2222 33456899999999998754 4557889999987  33  333433322  


Q ss_pred             ----ccCeEEEEEccCCcEEEEec-CCceEEEEECC--CCCe--EEEEecc-CccceeEEcCCCCeeEEEecCCcccccc
Q 021319          233 ----EWPVRTISFSHTGDYIASAS-EDLFIDISNVH--TGRT--VHQIPCR-AAMNSVEWNPKYNLLAYAGDDKNKYQAD  302 (314)
Q Consensus       233 ----~~~v~~~~~sp~~~~l~s~s-~d~~v~v~~~~--~~~~--~~~~~~~-~~i~~v~~~~~~~~la~~~~d~~~~~~~  302 (314)
                          ......|+++|||++|..+. .+..|.++++.  +|++  +..++.. ...+.++++|++++|+.++.+.      
T Consensus       240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s------  313 (345)
T PF10282_consen  240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS------  313 (345)
T ss_dssp             TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT------
T ss_pred             cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC------
Confidence                12477899999999988776 45779999983  3443  3344443 3488999999999999888664      


Q ss_pred             cceEEecccc
Q 021319          303 EGVFRIYGFE  312 (314)
Q Consensus       303 ~~~~~~~~~~  312 (314)
                       +.+.+|.++
T Consensus       314 -~~v~vf~~d  322 (345)
T PF10282_consen  314 -NTVSVFDID  322 (345)
T ss_dssp             -TEEEEEEEE
T ss_pred             -CeEEEEEEe
Confidence             566666653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2.7e-13  Score=110.58  Aligned_cols=239  Identities=15%  Similarity=0.179  Sum_probs=167.5

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC---CEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      .|++.|.|++|......+.+|+.+++|.+-|+++.     ..+....|.+   .|+.+..+|.+ +.+++.+.++.|.+|
T Consensus       103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~-----qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~  176 (609)
T KOG4227|consen  103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK-----QSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFI  176 (609)
T ss_pred             ccccceEEEEEccCCeeEecCCCcceeEeeecccc-----eeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEE
Confidence            35789999999999999999999999999999763     2334455665   89999999984 688999999999999


Q ss_pred             eCCCCce-e---eeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeE-eeee--c--c---CcceeeEEeccCC
Q 021319           95 DARSGKC-S---QQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKP-IHRR--K--F---GYEVNEIAWNMTG  161 (314)
Q Consensus        95 d~~~~~~-~---~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-~~~~--~--~---~~~~~~~~~~~~~  161 (314)
                      |.+...- .   ...+.......+.|+|.. .+|++....+...+||.+..+. +.++  .  .   ..+-..+.|+|.|
T Consensus       177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G  256 (609)
T KOG4227|consen  177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG  256 (609)
T ss_pred             eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence            9986542 1   111222333457788865 4667788889999999987643 2111  1  1   1223678899999


Q ss_pred             CeEEEEcCCceEEEEeCCCCC-ceeeeeeccc-------ceEEEEECCCCCEEEEeeCCCeEEEeeCCC-----c-----
Q 021319          162 EMFFLTTGNGTVEVLTYPSLR-PLDTVVAHTA-------GCYCIAIDPMGRYFAVGSADSLVSLWDISE-----M-----  223 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~-------~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~-----~-----  223 (314)
                      +++++.-..---.+|++-+.+ ++.++ .|..       .+.+++|--+.+ +++|+.+-.|++|.+..     +     
T Consensus       257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG  334 (609)
T KOG4227|consen  257 NQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIG  334 (609)
T ss_pred             CeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccC
Confidence            988754333223344443322 22222 1222       345666765444 89999999999998742     1     


Q ss_pred             -------------EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          224 -------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       224 -------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                                   +.+..+++|..-+..+.|+|...+|++.+-...+++|.-+.
T Consensus       335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence                         11334678888899999999999999999999999997654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.5e-12  Score=105.29  Aligned_cols=223  Identities=16%  Similarity=0.295  Sum_probs=138.4

Q ss_pred             cccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCc----------eeeEEeecCCCCEEEEEEcCCCCCEEEEEe-C
Q 021319           20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGK----------VKDIELRGHADSVDQLCWDPKHADLIATAS-G   87 (314)
Q Consensus        20 ~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~   87 (314)
                      ...|+|++|-|-+. .|+.|+ -+-|.+|..+......          ......+|| .+|+.+.|++++. .+++++ .
T Consensus       140 QrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~g  216 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFG  216 (445)
T ss_pred             hcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccC
Confidence            45799999999864 455555 4668899875432211          112244566 6799999999865 455554 5


Q ss_pred             CCcEEEEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCCcEEEEEccCCe-EeeeeccCcceeeEEeccCCCeEE
Q 021319           88 DKTVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      |..|+|||..++.+.......... ..+.|+||+.++++++-|+..++|+..... ...-......+....|+|+|..++
T Consensus       217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence            789999999999887766444444 468899999999999999999999654332 222233344778888999998877


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  244 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~  244 (314)
                      .+.....                    .++++.|+.....+- .++......+-|+........-...-.+..+++|.|.
T Consensus       297 f~~sgsp--------------------~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps  356 (445)
T KOG2139|consen  297 FACSGSP--------------------RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS  356 (445)
T ss_pred             EEEcCCc--------------------eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC
Confidence            6654321                    133444433221111 2222233334444322111100112346788999999


Q ss_pred             CcEEEEecCC--------ceEEEEECCCC
Q 021319          245 GDYIASASED--------LFIDISNVHTG  265 (314)
Q Consensus       245 ~~~l~s~s~d--------~~v~v~~~~~~  265 (314)
                      |.|||+-=+.        ..|..||....
T Consensus       357 GeyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  357 GEYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             CCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence            9999976432        23556665543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=3.6e-13  Score=109.68  Aligned_cols=220  Identities=15%  Similarity=0.200  Sum_probs=156.3

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC--CcEEEEeCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDAR   97 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D--~~v~iwd~~   97 (314)
                      .+.|..++..  ...|++|-.+|.+++|..........+...+..+ ..+..+--++..+.++++|+..  ..++|||+.
T Consensus       105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            4444444422  3468888889999999987433212222334333 4456666677777888899999  899999998


Q ss_pred             CCceeeeEE-ecC-------ce--EEEEEccC--CCEEEEEeCCCcEEEEEccCC-eEeeeecc-CcceeeEEeccCCCe
Q 021319           98 SGKCSQQAE-LSG-------EN--INITYKPD--GTHIAVGNRDDELTILDVRKF-KPIHRRKF-GYEVNEIAWNMTGEM  163 (314)
Q Consensus        98 ~~~~~~~~~-~~~-------~~--~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~  163 (314)
                      ..+.+.+.. ...       ++  ..+.|.+.  ...+++++.-+.+++||.+.. +|+..+.. ...+.++...|.++.
T Consensus       182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~  261 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF  261 (412)
T ss_pred             cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcE
Confidence            775443321 111       11  24667777  789999999999999999854 34444332 456888889999999


Q ss_pred             EEEEcCCceEEEEeCCCCCceee-eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319          164 FFLTTGNGTVEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS  242 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  242 (314)
                      ++++...+.+..||....+.... +.+-.++|.++..+|..+++|+++-|..+||+|+.+.+.+... ......+.|-+.
T Consensus       262 Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~  340 (412)
T KOG3881|consen  262 IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLR  340 (412)
T ss_pred             EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEec
Confidence            99999999999999988775544 6677889999999999999999999999999999885443221 122334555444


Q ss_pred             c
Q 021319          243 H  243 (314)
Q Consensus       243 p  243 (314)
                      +
T Consensus       341 ~  341 (412)
T KOG3881|consen  341 D  341 (412)
T ss_pred             C
Confidence            3

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.57  E-value=1.5e-10  Score=99.18  Aligned_cols=262  Identities=17%  Similarity=0.234  Sum_probs=164.0

Q ss_pred             ccEEEEEECCCCCEEEEeeC----CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319           21 KKVHSVAWNCTGTKLASGSV----DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~----D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~   96 (314)
                      .....++++|++++|.++..    ++.|..|.++.........-+..........++.+|++..++++.-.+++|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34567889999999888865    57999998876421111111222233344568888886545555556999999999


Q ss_pred             CC-Cceeee---EE-----------ecCceEEEEEccCCCEEEEEeC-CCcEEEEEccCCe--E--ee--eeccCcceee
Q 021319           97 RS-GKCSQQ---AE-----------LSGENINITYKPDGTHIAVGNR-DDELTILDVRKFK--P--IH--RRKFGYEVNE  154 (314)
Q Consensus        97 ~~-~~~~~~---~~-----------~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~--~--~~--~~~~~~~~~~  154 (314)
                      .. +.....   ..           ...+.-.+.++|+++++++... ...|.+|++....  .  ..  ....+...+.
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            76 443222   11           1123456889999998887654 4569999886543  2  22  2344566889


Q ss_pred             EEeccCCCeEEEEc-CCceEEEEeCC--CC--Cceeeeeec------ccceEEEEECCCCCEEEEeeC-CCeEEEeeCCC
Q 021319          155 IAWNMTGEMFFLTT-GNGTVEVLTYP--SL--RPLDTVVAH------TAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISE  222 (314)
Q Consensus       155 ~~~~~~~~~~~~~~-~~g~~~~~~~~--~~--~~~~~~~~~------~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~  222 (314)
                      ++|+|+++.+++.. .++.+.++++.  ..  +.+..+...      ......|+++|||++|.++.+ .+.|.+|+++.
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence            99999998776654 57889998876  22  112222111      125788999999999877665 56899999932


Q ss_pred             ----cEEEEEeeecccCeEEEEEccCCcEEEEecC-CceEEEEEC--CCCCeEEEEe--ccCccceeEE
Q 021319          223 ----MLCVRTFTKLEWPVRTISFSHTGDYIASASE-DLFIDISNV--HTGRTVHQIP--CRAAMNSVEW  282 (314)
Q Consensus       223 ----~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~-d~~v~v~~~--~~~~~~~~~~--~~~~i~~v~~  282 (314)
                          ...+..+.......+.++++|+|++|+.+.. ++.|.++++  .+|++.....  .-....||.|
T Consensus       277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence                2444454443444789999999999998874 568888876  4666443321  2234556665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=1.8e-12  Score=104.79  Aligned_cols=267  Identities=14%  Similarity=0.207  Sum_probs=168.1

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC-
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-   98 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~-   98 (314)
                      ..++.++|++.-..++.+..|-+||+|+-....   ..  .++ --...|.+++|-|.....|+.|. -+-|.+|.... 
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~---pt--~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~t  172 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC---PT--KLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRT  172 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCC---Cc--eecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcc
Confidence            467889999866779999999999999865421   11  122 23456999999998877665554 46789996532 


Q ss_pred             C---cee----------eeEEecCceEEEEEccCCCEEEEEeC-CCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCe
Q 021319           99 G---KCS----------QQAELSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEM  163 (314)
Q Consensus        99 ~---~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~  163 (314)
                      .   +..          .+...+..+.+|.|.+||..+++++. +..|.+||+.+.+.+.-. +....+..+.|+|+++.
T Consensus       173 ln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~  252 (445)
T KOG2139|consen  173 LNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV  252 (445)
T ss_pred             cccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence            1   110          11112234567999999999998765 556999999887654433 33456778999999999


Q ss_pred             EEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc
Q 021319          164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH  243 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp  243 (314)
                      ++++.-|+..++|...............+.+....|+|.|+.|.-.+.. .-++|.+                   .|..
T Consensus       253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl-------------------~f~~  312 (445)
T KOG2139|consen  253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSL-------------------TFDG  312 (445)
T ss_pred             EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEE-------------------eecC
Confidence            9999999999999554332222222334578899999999876544322 2233332                   2211


Q ss_pred             CCcEEE-EecCCceEEEEECCCCCe-EEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          244 TGDYIA-SASEDLFIDISNVHTGRT-VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       244 ~~~~l~-s~s~d~~v~v~~~~~~~~-~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ....+. .++.-...-+-|+..-.. ..+-.+.++.-+++|-|.|.+||+.=..++..+.-.+.+.+|+..+
T Consensus       313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence            111000 111111122222211000 0011135678899999999999988877776666677777877643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=1.1e-12  Score=114.69  Aligned_cols=276  Identities=16%  Similarity=0.225  Sum_probs=190.2

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC-----------ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----------KVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~-----------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D   88 (314)
                      ....+|++|+....+|++||.||.++|-.+.+....           ......+.||++.|..+.|+.+ .+.|.|...+
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCCC
Confidence            446899999999999999999999999988653221           1112367899999999999976 4678888999


Q ss_pred             CcEEEEeCCCCceeeeE-E--ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319           89 KTVRLWDARSGKCSQQA-E--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      |-|.+|-+-+|...... +  .++...+++|+.||..++....||.+.+=.+...+.-.....+.....+.|+++...++
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence            99999998777543221 1  13345689999999999999999998887664433222222234566889999999999


Q ss_pred             EEcCCceEEEEeCCCCC-------c-eee---eeecccceEEEEE--------CCCCCEEEEeeCCCeEEEeeCCCcEEE
Q 021319          166 LTTGNGTVEVLTYPSLR-------P-LDT---VVAHTAGCYCIAI--------DPMGRYFAVGSADSLVSLWDISEMLCV  226 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~-------~-~~~---~~~~~~~i~~i~~--------~~~~~~l~t~~~dg~i~vwd~~~~~~~  226 (314)
                      ++..+|...+++.+..-       + +..   +...+..+-.+.|        -|+...||++-.+|.+.+..-......
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            99999999999865310       1 100   0111122444444        368889999999999888865432211


Q ss_pred             EEeeecccCeEEEEEccCCcEEEEecCCc---------eEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCC
Q 021319          227 RTFTKLEWPVRTISFSHTGDYIASASEDL---------FIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       227 ~~~~~~~~~v~~~~~sp~~~~l~s~s~d~---------~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      -.+ .....+..+.|+|+|.+||.++.|.         .|+.+. .-|+.+..++. +..|++++|--.+=.+|-+- |+
T Consensus       253 vv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-ds  329 (1189)
T KOG2041|consen  253 VVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DS  329 (1189)
T ss_pred             eEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe-cc
Confidence            112 1224577889999999999988652         344443 35666666654 55799999987665555443 44


Q ss_pred             ccc
Q 021319          297 NKY  299 (314)
Q Consensus       297 ~~~  299 (314)
                      .+|
T Consensus       330 fiy  332 (1189)
T KOG2041|consen  330 FIY  332 (1189)
T ss_pred             eEE
Confidence            444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=9.7e-13  Score=119.19  Aligned_cols=188  Identities=15%  Similarity=0.124  Sum_probs=147.7

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc-----eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee
Q 021319          114 ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-----VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV  188 (314)
Q Consensus       114 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  188 (314)
                      ..+..+.+.+++...+..+.++|..........+.+..     ..-+..++..-++++++..+.+.+|.....++-..+.
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~  172 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK  172 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence            44556778899999999999999987766555544322     1223334455567778888999999876433333577


Q ss_pred             ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE-EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCe
Q 021319          189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  267 (314)
Q Consensus       189 ~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~  267 (314)
                      +|++.|..+.++.||+++++.+.|.++|+|++.+.+... +..+|...|..++|.|+  .++|+++|.++++|+. .++.
T Consensus       173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~  249 (967)
T KOG0974|consen  173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQ  249 (967)
T ss_pred             ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-ccce
Confidence            999999999999999999999999999999999887665 56689999999999998  9999999999999954 4455


Q ss_pred             EEEEe-c-cCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          268 VHQIP-C-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       268 ~~~~~-~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +..+. | ...|..++-++....+.|++.|        |.+|+|++.
T Consensus       250 l~~y~~h~g~~iw~~~~~~~~~~~vT~g~D--------s~lk~~~l~  288 (967)
T KOG0974|consen  250 LEVYDEHSGKGIWKIAVPIGVIIKVTGGND--------STLKLWDLN  288 (967)
T ss_pred             ehhhhhhhhcceeEEEEcCCceEEEeeccC--------cchhhhhhh
Confidence            55543 2 4579999999999999999987        578888863

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=2e-11  Score=107.75  Aligned_cols=206  Identities=16%  Similarity=0.146  Sum_probs=136.6

Q ss_pred             CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC---CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      ..|.++|....................|+|||+.|+....+   ..|.+||+.+.+...............|+|+++.++
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            35777887544433333333346678899999999877654   369999998765433333334456688999998776


Q ss_pred             EE-cCCc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC-CC--eEEEeeCCCcEEEEEeeecccCeEEE
Q 021319          166 LT-TGNG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEWPVRTI  239 (314)
Q Consensus       166 ~~-~~~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~  239 (314)
                      .. ..++  .+++++..... ...+..+........|+|+|+.|+..+. ++  .|.++|+..+.. ..+..........
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~  327 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASP  327 (417)
T ss_pred             EEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCe
Confidence            54 3333  57777765543 2333334444456789999998775544 33  577778776543 3333344456678


Q ss_pred             EEccCCcEEEEecCCc---eEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319          240 SFSHTGDYIASASEDL---FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       240 ~~sp~~~~l~s~s~d~---~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      +|+|+|++++.++.+.   .|.++|..++.. ..+.........+|+|++++|++.+.+..
T Consensus       328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~~  387 (417)
T TIGR02800       328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRGG  387 (417)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCCC
Confidence            9999999999888775   789999887543 33333334567799999999988887653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.52  E-value=8.1e-12  Score=100.49  Aligned_cols=244  Identities=17%  Similarity=0.266  Sum_probs=158.3

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCce-eeEEeecCC------------CCEEEEEEcCCC-CCEEEEE
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHA------------DSVDQLCWDPKH-ADLIATA   85 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~-~~~~~~~h~------------~~v~~l~~~~~~-~~~l~s~   85 (314)
                      .+.|.+|.|...|.+|+||+.+|.|.++.-+....+.- -...++.|.            ..|+.+.|.+++ ...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            45799999999999999999999999996432211100 111222332            356778887654 3456678


Q ss_pred             eCCCcEEEEeCCCCceee------------------eEE-------------------ecCceEEEEEccCCCEEEEEeC
Q 021319           86 SGDKTVRLWDARSGKCSQ------------------QAE-------------------LSGENINITYKPDGTHIAVGNR  128 (314)
Q Consensus        86 ~~D~~v~iwd~~~~~~~~------------------~~~-------------------~~~~~~~~~~~~~~~~l~~~~~  128 (314)
                      ..|++|++|-+.......                  ...                   +.-.+.++.++.|...++++ .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence            899999999765321110                  000                   00122346667777666554 6


Q ss_pred             CCcEEEEEccCCeEee---eecc------CcceeeEEeccCC-CeEEEEcCCceEEEEeCCCCC------ceee------
Q 021319          129 DDELTILDVRKFKPIH---RRKF------GYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLR------PLDT------  186 (314)
Q Consensus       129 d~~i~i~d~~~~~~~~---~~~~------~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~------~~~~------  186 (314)
                      |-.|.+|.+.-...-.   .++.      ..-+.+..|+|.. +.++-++..|++++.|++...      .+..      
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            7789999986543222   1221      1225566788865 567778889999999987321      1111      


Q ss_pred             ----eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC-CcEEEEEeeeccc---------------CeEEEEEccCCc
Q 021319          187 ----VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEW---------------PVRTISFSHTGD  246 (314)
Q Consensus       187 ----~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~~~---------------~v~~~~~sp~~~  246 (314)
                          +...-..|..+.|+++|+++++-+- -+|++||+. ..+.+.+++-|..               .-..++|+-++.
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~  342 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS  342 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence                1112245788999999999987643 579999993 4555666655432               124578999999


Q ss_pred             EEEEecCCceEEEEECCCC
Q 021319          247 YIASASEDLFIDISNVHTG  265 (314)
Q Consensus       247 ~l~s~s~d~~v~v~~~~~~  265 (314)
                      +++|||-....++++...|
T Consensus       343 ~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  343 YVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             eEecccccceEEEecCCCC
Confidence            9999999999999996554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.51  E-value=1.1e-11  Score=109.44  Aligned_cols=201  Identities=16%  Similarity=0.225  Sum_probs=129.8

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCC---CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D---~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      .+.+..+...+.+..|+|||++|+.+..+   ..|++|+++.+.   ..  .+..+...+...+|+|++..++++.+.++
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~~--~~~~~~~~~~~~~~spDg~~l~~~~~~~~  256 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---RE--KVASFPGMNGAPAFSPDGSKLAVSLSKDG  256 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---EE--EeecCCCCccceEECCCCCEEEEEECCCC
Confidence            34556677789999999999999887654   479999986532   11  23345566777899998765666666554


Q ss_pred             --cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CC--cEEEEEccCCeEeeeeccCcceeeEEeccCCCeE
Q 021319           90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        90 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                        .|.+||+.++................|+|+++.|+..+. .+  .|.++|+...+...-...........|+|+++.+
T Consensus       257 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i  336 (417)
T TIGR02800       257 NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLI  336 (417)
T ss_pred             CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEE
Confidence              588889887764443322222345689999998876654 33  4677777655433222233445677899999998


Q ss_pred             EEEcCCc---eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC---eEEEeeC
Q 021319          165 FLTTGNG---TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---LVSLWDI  220 (314)
Q Consensus       165 ~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg---~i~vwd~  220 (314)
                      +....++   .+.+++...... ..+.. .......+|+|++++|+..+.++   .+.+.+.
T Consensus       337 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       337 AFVHREGGGFNIAVMDLDGGGE-RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             EEEEccCCceEEEEEeCCCCCe-EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            8877654   677777655332 22221 12234568999999888776654   3445453

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.9e-13  Score=114.84  Aligned_cols=170  Identities=22%  Similarity=0.349  Sum_probs=125.8

Q ss_pred             EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEE--ecCceEEEEEcc--CCCEEEEEeCCCcEEEE
Q 021319           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKP--DGTHIAVGNRDDELTIL  135 (314)
Q Consensus        60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~--~~~~l~~~~~d~~i~i~  135 (314)
                      .++.||.+-|++|.|+.+ +.+|+|||.|-.+.|||.-..+......  +..+++++.|.|  ....+++|..|..|+++
T Consensus        44 ~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            478899999999999976 5799999999999999987666555443  245677888887  45688889999999999


Q ss_pred             EccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCC-CEEEEeeCCCe
Q 021319          136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSL  214 (314)
Q Consensus       136 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~  214 (314)
                      |+...+.-.                       ..+|        ..++...+..|...+..|+.-|++ ..+-+++.||+
T Consensus       123 dl~~~~~~~-----------------------~d~~--------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt  171 (758)
T KOG1310|consen  123 DLDSSKEGG-----------------------MDHG--------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT  171 (758)
T ss_pred             ecccccccc-----------------------cccC--------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence            987543110                       0011        112233455688888899999988 67889999999


Q ss_pred             EEEeeCCCcEEE-------EE---eeecccCeEEEEEccCC-cEEEEecCCceEEEEE
Q 021319          215 VSLWDISEMLCV-------RT---FTKLEWPVRTISFSHTG-DYIASASEDLFIDISN  261 (314)
Q Consensus       215 i~vwd~~~~~~~-------~~---~~~~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~  261 (314)
                      |+-+|++....-       ..   +...--...++..+|.. .+||.|+.|-..++||
T Consensus       172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence            999999864211       11   11111346788999975 6899999999999999

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.49  E-value=8.6e-10  Score=92.85  Aligned_cols=240  Identities=14%  Similarity=0.148  Sum_probs=148.7

Q ss_pred             CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe---------CCCcEEEEeCCCCceeeeEEecCce-
Q 021319           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWDARSGKCSQQAELSGEN-  111 (314)
Q Consensus        42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~D~~v~iwd~~~~~~~~~~~~~~~~-  111 (314)
                      ++|.+.|.++..   +.. .+..-..+- .+ ++|+++.+.++.+         .+..|.+||..+.+....+...... 
T Consensus        27 ~~v~ViD~~~~~---v~g-~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~  100 (352)
T TIGR02658        27 TQVYTIDGEAGR---VLG-MTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR  100 (352)
T ss_pred             ceEEEEECCCCE---EEE-EEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence            788898886532   222 122112222 23 7888776666677         6899999999999988777654332 


Q ss_pred             -------EEEEEccCCCEEEEEe-C-CCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC-C
Q 021319          112 -------INITYKPDGTHIAVGN-R-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-L  181 (314)
Q Consensus       112 -------~~~~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~  181 (314)
                             ..++++|||++|++.. . +..+.+.|+.+.+.+..+..+....-...+...  +.+-+.||......+.. .
T Consensus       101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g  178 (352)
T TIGR02658       101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT--FFMHCRDGSLAKVGYGTKG  178 (352)
T ss_pred             hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc--cEEEeecCceEEEEecCCC
Confidence                   2688999999999776 3 678999999998888776653211111111111  11223333333322211 1


Q ss_pred             Cc-eeeee-ecc------cceEEEEECC-CCCEEEEeeCCCeEEEeeCCCc-----EEEEEeeec----cc---CeEEEE
Q 021319          182 RP-LDTVV-AHT------AGCYCIAIDP-MGRYFAVGSADSLVSLWDISEM-----LCVRTFTKL----EW---PVRTIS  240 (314)
Q Consensus       182 ~~-~~~~~-~~~------~~i~~i~~~~-~~~~l~t~~~dg~i~vwd~~~~-----~~~~~~~~~----~~---~v~~~~  240 (314)
                      +. ..... .+.      ...   .+.+ +|+++.+... |.|.+.|+...     .....+...    .+   .+.-++
T Consensus       179 ~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia  254 (352)
T TIGR02658       179 NPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA  254 (352)
T ss_pred             ceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence            10 00000 011      111   3345 8888877766 99999996432     222222111    11   223399


Q ss_pred             EccCCcEEEEecC----------CceEEEEECCCCCeEEEEeccCccceeEEcCCCC-eeEEEe
Q 021319          241 FSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAG  293 (314)
Q Consensus       241 ~sp~~~~l~s~s~----------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-~la~~~  293 (314)
                      ++|+++.+..+..          ...|.++|..+++.+..++....+..++++|+++ .|.+.+
T Consensus       255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeC
Confidence            9999998887531          2579999999999999998888999999999999 665555

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=5.4e-11  Score=104.49  Aligned_cols=223  Identities=11%  Similarity=0.083  Sum_probs=138.7

Q ss_pred             eecCCCCEEEEEEcCCCCC--EEEEEeCCC--cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CC--c--E
Q 021319           62 LRGHADSVDQLCWDPKHAD--LIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--E--L  132 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~--~l~s~~~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~--i  132 (314)
                      +.........-.|+|++..  +++....++  .|.+.++..++..+.....+......|+|||+.|+.... ++  .  +
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~  259 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFI  259 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeE
Confidence            3334445566799999755  323444443  466668888876555555666667899999998886553 22  2  3


Q ss_pred             EEEEccCC---eEeeeeccC-cceeeEEeccCCCeEEEEc-CCceEEEE--eCCC-CCceeeeeecccceEEEEECCCCC
Q 021319          133 TILDVRKF---KPIHRRKFG-YEVNEIAWNMTGEMFFLTT-GNGTVEVL--TYPS-LRPLDTVVAHTAGCYCIAIDPMGR  204 (314)
Q Consensus       133 ~i~d~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~-~~~~~~~~~~~~~i~~i~~~~~~~  204 (314)
                      ..|++...   ++....... .......|+|+|+.++... .+|...+|  +... ......+..+...+....|+|||+
T Consensus       260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~  339 (428)
T PRK01029        260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK  339 (428)
T ss_pred             EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence            34565532   221111111 2235678999999777654 45544444  4332 122233333444567889999999


Q ss_pred             EEEEeeCC---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecC---CceEEEEECCCCCeEEEEeccCccc
Q 021319          205 YFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE---DLFIDISNVHTGRTVHQIPCRAAMN  278 (314)
Q Consensus       205 ~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~---d~~v~v~~~~~~~~~~~~~~~~~i~  278 (314)
                      .|+..+.+   ..|.+||+.+++... +......+....|+|||++|+..+.   ...+.++++..++........+.+.
T Consensus       340 ~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~  418 (428)
T PRK01029        340 KIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKR  418 (428)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCccc
Confidence            88866543   369999998776543 3333345677899999998875433   3568888888776544444455678


Q ss_pred             eeEEcCC
Q 021319          279 SVEWNPK  285 (314)
Q Consensus       279 ~v~~~~~  285 (314)
                      ..+|+|.
T Consensus       419 ~p~Ws~~  425 (428)
T PRK01029        419 FPSWGAF  425 (428)
T ss_pred             CceecCC
Confidence            8899984

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2.7e-11  Score=106.37  Aligned_cols=207  Identities=13%  Similarity=0.058  Sum_probs=124.2

Q ss_pred             CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEE---EEEeCCC--cEEEEEccCCeEeeeeccCcceeeEEeccCCCe
Q 021319           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHI---AVGNRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      ..|.+.|...+..............-.|+|||+.+   ++...++  .|.+.++...+...-..........+|+|+|+.
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            35666677655433322223334567899999753   2444444  477778776554333333334456789999988


Q ss_pred             EEEEcC-Cc--eEEE--EeCCCC--Cceeeee-ecccceEEEEECCCCCEEEEee-CCCeEEEeeC--CC-cEEEEEeee
Q 021319          164 FFLTTG-NG--TVEV--LTYPSL--RPLDTVV-AHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDI--SE-MLCVRTFTK  231 (314)
Q Consensus       164 ~~~~~~-~g--~~~~--~~~~~~--~~~~~~~-~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~--~~-~~~~~~~~~  231 (314)
                      ++.... .|  .+.+  |+....  .....+. .........+|+|||+.|+..+ .+|...+|.+  .. +.....+..
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~  324 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK  324 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence            877653 23  3333  444321  1122222 2223345779999999877554 5675566644  31 223344444


Q ss_pred             cccCeEEEEEccCCcEEEEecCC---ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319          232 LEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       232 ~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      ....+...+|||||+.|+..+.+   ..|.+||+.+++..........+....|+|++++|++...+
T Consensus       325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC
Confidence            44456778999999998876543   46899999887654322223457789999999999876654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.8e-11  Score=108.35  Aligned_cols=221  Identities=13%  Similarity=0.104  Sum_probs=130.9

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeC-CC--cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc-
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSV-DQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT-   90 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~-D~--~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~-   90 (314)
                      .+..+...+.+..|||||+.|+..+. ++  .|.+||+....   ..  .+....+......|+|++..++++.+.++. 
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~---~~--~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~  286 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV---RE--KVTSFPGINGAPRFSPDGKKLALVLSKDGQP  286 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC---eE--EecCCCCCcCCeeECCCCCEEEEEEeCCCCe
Confidence            34444566788999999999887654 33  46667765432   11  122222334467999987656666777776 


Q ss_pred             -EEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CCc--EEEEEccCCeEeeeeccCcceeeEEeccCCCeEEE
Q 021319           91 -VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        91 -v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                       |.++|+.+++...............|+||++.++..+. ++.  +.++|+...+...-...+.......|+|+++.+++
T Consensus       287 ~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        287 EIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence             66778887765443332333456889999998876553 344  55567665543221112222344689999998877


Q ss_pred             EcC-Cc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC-C--eEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319          167 TTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-S--LVSLWDISEMLCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       167 ~~~-~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~  240 (314)
                      ... ++  .+.++++.+.+. ..+... .......|+|+|++++..+.+ |  .+.+++. ++.....+......+...+
T Consensus       367 ~~~~~g~~~I~~~dl~~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~  443 (448)
T PRK04792        367 VNRTNGKFNIARQDLETGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPA  443 (448)
T ss_pred             EEecCCceEEEEEECCCCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCc
Confidence            654 34  344456554432 222211 112234799999987765544 3  3666776 4444555554445566777


Q ss_pred             Ecc
Q 021319          241 FSH  243 (314)
Q Consensus       241 ~sp  243 (314)
                      |+|
T Consensus       444 Wsp  446 (448)
T PRK04792        444 WSP  446 (448)
T ss_pred             cCC
Confidence            877

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=8.9e-11  Score=103.92  Aligned_cols=220  Identities=15%  Similarity=0.240  Sum_probs=134.8

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEE-EeCCCc--EEEEE
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDE--LTILD  136 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~--i~i~d  136 (314)
                      +..+...+....|+|++..++.+...++  .|.+||+.+++........+......|+|||+.|+. ...++.  |.++|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            3455677888999998754444443343  577889988765443333333446789999998875 455564  77778


Q ss_pred             ccCCeEeeeeccCcceeeEEeccCCCeEEEEcC-Cc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC-C
Q 021319          137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-D  212 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-d  212 (314)
                      +.+.+...-...........|+|+++.+++... ++  .+..++....+.. .+..........+|+|+|++++..+. +
T Consensus       293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~  371 (448)
T PRK04792        293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTN  371 (448)
T ss_pred             CCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecC
Confidence            776544322222234466789999998776653 33  4555565544422 22222222345689999998876654 3


Q ss_pred             C--eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC-c--eEEEEECCCCCeEEEEec-cCccceeEEcCC
Q 021319          213 S--LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED-L--FIDISNVHTGRTVHQIPC-RAAMNSVEWNPK  285 (314)
Q Consensus       213 g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-~--~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~  285 (314)
                      +  .|.++|+.++... .+..... ....+|+|+|++|+..+.+ +  .+.+++. +|+..+.+.. .+.+...+|+|-
T Consensus       372 g~~~I~~~dl~~g~~~-~lt~~~~-d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        372 GKFNIARQDLETGAMQ-VLTSTRL-DESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CceEEEEEECCCCCeE-EccCCCC-CCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence            4  3555677666432 2222211 1234799999988876654 3  3666676 5666666653 356788899983

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.2e-10  Score=103.07  Aligned_cols=219  Identities=16%  Similarity=0.234  Sum_probs=136.5

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCC---CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEE-eCCC--cEEEE
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDD--ELTIL  135 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~--~i~i~  135 (314)
                      +..+...+....|+|++. .|+..+.+   ..|.+||+.++.........+......|+|||+.|+.. ..++  .|.++
T Consensus       194 l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~  272 (430)
T PRK00178        194 LLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM  272 (430)
T ss_pred             EecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence            445677889999999865 55444432   36888999888755443334444468899999988754 4444  57888


Q ss_pred             EccCCeEeeeeccCcceeeEEeccCCCeEEEEcC-Cc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC
Q 021319          136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (314)
Q Consensus       136 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d  212 (314)
                      |+.+.+...-...........|+|+++.++.... +|  .++.++....+.. .+..........+|+|+|+.++..+.+
T Consensus       273 d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~  351 (430)
T PRK00178        273 DLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQ  351 (430)
T ss_pred             ECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEcc
Confidence            9877654322222223456789999988776553 33  5666666554422 222112223456899999998876653


Q ss_pred             -C--eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC---ceEEEEECCCCCeEEEEec-cCccceeEEcCC
Q 021319          213 -S--LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPK  285 (314)
Q Consensus       213 -g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~  285 (314)
                       +  .|.+||+.++... .+.... .....+|+|+|++++..+.+   ..+.+.+.. |...+.++. .+.+...+|+|-
T Consensus       352 ~~~~~l~~~dl~tg~~~-~lt~~~-~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        352 DGNFHVAAQDLQRGSVR-ILTDTS-LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCceEEEEEECCCCCEE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence             3  4888898876542 232211 12245899999999877654   346666664 444444443 356788899884

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=3.6e-13  Score=112.65  Aligned_cols=250  Identities=17%  Similarity=0.180  Sum_probs=186.7

Q ss_pred             eecccccEEEEEECCCC--CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           16 YTGHKKKVHSVAWNCTG--TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g--~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      ..||...|..-.|-|..  ..|++++.||.||+=.+...+.- .....+..|.++|..++..|....-|.|++.|+.+.-
T Consensus       181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~-e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~  259 (559)
T KOG1334|consen  181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV-ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFH  259 (559)
T ss_pred             ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce-ecceecccccCccceeeecCCCCCcccccccccceee
Confidence            46899999998998874  46999999999999665432211 1123466799999999999998889999999999999


Q ss_pred             EeCCCCceeeeEEe----cC---ceEEEEEccCCC-EEEEEeCCCcEEEEEccCCeEe------eee-------ccCcce
Q 021319           94 WDARSGKCSQQAEL----SG---ENINITYKPDGT-HIAVGNRDDELTILDVRKFKPI------HRR-------KFGYEV  152 (314)
Q Consensus        94 wd~~~~~~~~~~~~----~~---~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~------~~~-------~~~~~~  152 (314)
                      .|++.+.....+..    ..   ....++..|-.. .+++++.|...++||.++.+..      ...       .....+
T Consensus       260 ~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~I  339 (559)
T KOG1334|consen  260 IDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNI  339 (559)
T ss_pred             eeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccc
Confidence            99987754322211    11   223577777554 8899999999999998764322      111       123457


Q ss_pred             eeEEeccCCCeEEEEcCCceEEEEeCCC--C----------Cceee-eeecccc--eEEEE-ECCCCCEEEEeeCCCeEE
Q 021319          153 NEIAWNMTGEMFFLTTGNGTVEVLTYPS--L----------RPLDT-VVAHTAG--CYCIA-IDPMGRYFAVGSADSLVS  216 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~----------~~~~~-~~~~~~~--i~~i~-~~~~~~~l~t~~~dg~i~  216 (314)
                      .+++|+.++.-++++..+-.++++.-..  +          ..+.. +.+|...  |..+- |-|...++++|+.=|.|.
T Consensus       340 Tgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF  419 (559)
T KOG1334|consen  340 TGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF  419 (559)
T ss_pred             eeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEE
Confidence            8999998888888888888888884211  1          11222 5667643  44554 467778999998889999


Q ss_pred             EeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCC
Q 021319          217 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       217 vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~  266 (314)
                      +|+-.+++.++.+++...-|+||.=+|--..|||.+-|.-|+||...+.+
T Consensus       420 iW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  420 IWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             EEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            99999999888888877789999999999999999999999999875543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1e-10  Score=103.56  Aligned_cols=204  Identities=15%  Similarity=0.129  Sum_probs=130.2

Q ss_pred             cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC---CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEE
Q 021319           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .|.++|...+................|+|||+.|+..+.+   ..|.++|+.+.+...-...........|+|+|+.+++
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            4677787655443333334455678999999998766543   3588889877654332222333456899999998775


Q ss_pred             E-cCCc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee-CCC--eEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319          167 T-TGNG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADS--LVSLWDISEMLCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       167 ~-~~~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~  240 (314)
                      . ..+|  .+++++....+. ..+..+........|+|||+.++..+ .+|  .|.++|+.++...+ +..........+
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~  337 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPR  337 (430)
T ss_pred             EEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceE
Confidence            4 3344  577777765442 33444444556778999999776554 344  47777776665332 221112234568


Q ss_pred             EccCCcEEEEecCC-c--eEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319          241 FSHTGDYIASASED-L--FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       241 ~sp~~~~l~s~s~d-~--~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      |+|+|++|+..+.+ +  .+.++|+.+++. +.+..........|+|++.++++++.+.
T Consensus       338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~~~~  395 (430)
T PRK00178        338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYATRQQ  395 (430)
T ss_pred             ECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEEecC
Confidence            99999999877643 3  578889887754 3333333344679999999999888654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.45  E-value=2e-09  Score=90.65  Aligned_cols=234  Identities=15%  Similarity=0.154  Sum_probs=144.3

Q ss_pred             ECCCCCEEEEeeC----------CCcEEEeecCCCCCCceeeEEeecC-----CCCEEEEEEcCCCCCEEEEEeC-CCcE
Q 021319           28 WNCTGTKLASGSV----------DQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASG-DKTV   91 (314)
Q Consensus        28 ~s~~g~~l~s~~~----------D~~v~iw~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~l~s~~~-D~~v   91 (314)
                      +||||+.|..+..          +..|.+||..+..  .+..+.+..-     ......++++|++..++++--. +..|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence            8999998777654          8899999997643  2222222211     1223467888986544444434 8999


Q ss_pred             EEEeCCCCceeeeEEecCceEEEEE--------ccCCCEEEEEe-CCCcEEEEEccCCeEeeeec---cCcceeeEEecc
Q 021319           92 RLWDARSGKCSQQAELSGENINITY--------KPDGTHIAVGN-RDDELTILDVRKFKPIHRRK---FGYEVNEIAWNM  159 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~  159 (314)
                      -+.|+.+++.+.+........-...        +.||..+.... .+|....   ++ .++....   .....   .+.+
T Consensus       131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~---~~-~~vf~~~~~~v~~rP---~~~~  203 (352)
T TIGR02658       131 GVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI---KP-TEVFHPEDEYLINHP---AYSN  203 (352)
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE---ee-eeeecCCccccccCC---ceEc
Confidence            9999999998887766443332222        23333332221 1222110   00 0110000   00001   2344


Q ss_pred             -CCCeEEEEcCCceEEEEeCCCC-----Cceeeeee-------cccceEEEEECCCCCEEEEee----------CCCeEE
Q 021319          160 -TGEMFFLTTGNGTVEVLTYPSL-----RPLDTVVA-------HTAGCYCIAIDPMGRYFAVGS----------ADSLVS  216 (314)
Q Consensus       160 -~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~-------~~~~i~~i~~~~~~~~l~t~~----------~dg~i~  216 (314)
                       ++..++++.+ |++.+.++...     ++...+..       ..+...-++++++++.+.+..          ..+.|.
T Consensus       204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~  282 (352)
T TIGR02658       204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF  282 (352)
T ss_pred             CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence             6777777777 99999995332     22222211       123344599999998877743          124799


Q ss_pred             EeeCCCcEEEEEeeecccCeEEEEEccCCc-EEEEec-CCceEEEEECCCCCeEEEEe
Q 021319          217 LWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       217 vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s-~d~~v~v~~~~~~~~~~~~~  272 (314)
                      ++|..+.+.+..+.. ...+..++++||++ +|++.. .++.|.+.|+.+++.+..+.
T Consensus       283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            999999999888754 44788999999999 777666 57889999999999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=2.1e-10  Score=98.00  Aligned_cols=274  Identities=17%  Similarity=0.211  Sum_probs=162.9

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEE-----EeCC-----CcE
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT-----ASGD-----KTV   91 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-----~~~D-----~~v   91 (314)
                      ..+..++|++|++++-+. +..++|++.....  .+    +..-...+++|.|+|.+ +++.+     --.|     -.+
T Consensus        36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~--~~----lt~~~~~~~~L~fSP~g-~yL~T~e~~~i~~~~~~~~pn~  107 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK--VV----LCVELKKTYDLLFSPKG-NYLLTWEPWAIYGPKNASNPNV  107 (566)
T ss_pred             cceeEEEcCCCcEEEEEc-CCeEEEEEccCCc--EE----EEeccceeeeeeecccc-cccccccccccccCCCCCCCce
Confidence            367888999888777665 6789999876532  11    11122267889999875 34432     1122     345


Q ss_pred             EEEeCCCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccC----------
Q 021319           92 RLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT----------  160 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----------  160 (314)
                      ++|++.++.....+..... .....|+.|..+. +--..+.+.++++..++......+...+.....+|.          
T Consensus       108 ~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyv  186 (566)
T KOG2315|consen  108 LVYNVETGVQRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYV  186 (566)
T ss_pred             eeeeeccceehhheehhhhcCcccccccchhhh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEc
Confidence            6888877433322222111 1355566665432 223345677777766544333333333333444433          


Q ss_pred             ------------------------------------------CCeEEEE-c-----------CCceEEEEeCCCCCceee
Q 021319          161 ------------------------------------------GEMFFLT-T-----------GNGTVEVLTYPSLRPLDT  186 (314)
Q Consensus       161 ------------------------------------------~~~~~~~-~-----------~~g~~~~~~~~~~~~~~~  186 (314)
                                                                +.-+++. .           +..+++++........-.
T Consensus       187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~  266 (566)
T KOG2315|consen  187 PEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP  266 (566)
T ss_pred             cCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe
Confidence                                                      3222111 0           012233333221111111


Q ss_pred             eeecccceEEEEECCCCCEEEEe--eCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC---ceEEEEE
Q 021319          187 VVAHTAGCYCIAIDPMGRYFAVG--SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISN  261 (314)
Q Consensus       187 ~~~~~~~i~~i~~~~~~~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~  261 (314)
                      + ...++|.++.|+|+++.+++.  -.=.++.+||++ +..+..  -.+.+-+++-|+|.|++++-|+-+   |.+-|||
T Consensus       267 L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  267 L-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             c-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence            1 135779999999999887654  334689999975 333333  345667889999999999998865   8899999


Q ss_pred             CCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          262 VHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +.+-+.+..+...+ -+-++|+|||.+|.|+..--  +...++-+|||+.
T Consensus       343 v~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaP--RlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  343 VPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAP--RLRVDNGIKIWHY  389 (566)
T ss_pred             ccchhhccccccCC-ceEEEEcCCCcEEEEEeccc--cEEecCCeEEEEe
Confidence            99977776665433 34579999999999888542  2335667999986

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=5.8e-11  Score=101.85  Aligned_cols=187  Identities=23%  Similarity=0.275  Sum_probs=146.2

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCceeeeEE----ecCceEEEEE--------------------ccCCCEEEEEeCCCc
Q 021319           76 PKHADLIATASGDKTVRLWDARSGKCSQQAE----LSGENINITY--------------------KPDGTHIAVGNRDDE  131 (314)
Q Consensus        76 ~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~----~~~~~~~~~~--------------------~~~~~~l~~~~~d~~  131 (314)
                      |....++|....||.+|+||..+++....+.    ..+......|                    +.+...++.|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3345789999999999999998887654432    1222222222                    234567888999999


Q ss_pred             EEEEEccCCeEeeee---ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEE
Q 021319          132 LTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV  208 (314)
Q Consensus       132 i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t  208 (314)
                      |.+++....+.-.+.   .+...+.++.++.+-..+.+++.+..+..|.....+.+.....-...+.+++++||+.++++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            999999887765443   35567888888888899999999999999999888777777777778899999999999998


Q ss_pred             eeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC-----CcEEEE-ecCCceEEEEECCC
Q 021319          209 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-----GDYIAS-ASEDLFIDISNVHT  264 (314)
Q Consensus       209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~s-~s~d~~v~v~~~~~  264 (314)
                      ++.  .|++||+++.+.+.+|++|..+|++++|.-+     |.++.+ +..+..+.+|-+..
T Consensus       162 as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 ASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            864  5999999999999999999999999999877     566554 45566677776544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.40  E-value=3e-11  Score=97.26  Aligned_cols=247  Identities=16%  Similarity=0.203  Sum_probs=175.0

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+.+.||.+.|++...-|-.+-+++.+.|.++|||--.... ..-+.+. .....++.++.+++. ...|+.|-..|++.
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~-q~wpsI~-~~mP~~~~~~~y~~e-~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG-QYWPSIY-HYMPSPCSAMEYVSE-SRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc-ccCchhh-hhCCCCceEeeeecc-ceEEEEEEecceEE
Confidence            35578999999999888888899999999999999432211 1112221 123456788888875 45777888888888


Q ss_pred             EEeCCCC----ceeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319           93 LWDARSG----KCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        93 iwd~~~~----~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      -+.+...    ...+.. ........+-|+....++++.+.|..+.....+..+.+..+..........+...  +.+++
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvG  171 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVG  171 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEec
Confidence            7754321    111111 1223445566777788999999998888777776665544432222222222111  55666


Q ss_pred             cCCceEEEEeCC--CCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE-EEEEeeecccCeEEEEEccC
Q 021319          168 TGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHT  244 (314)
Q Consensus       168 ~~~g~~~~~~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~sp~  244 (314)
                      ...|.+....+.  ...++..+.+|...+++++|++..+.|.+|..|..+.+||+--.+ ....+.+|...|..++.-+-
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~  251 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH  251 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh
Confidence            677777776653  445677788999999999999999999999999999999996433 23455678888999988888


Q ss_pred             CcEEEEecCCceEEEEECCC
Q 021319          245 GDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~~  264 (314)
                      -+.|.+++.||.|-+|+...
T Consensus       252 t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  252 TRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             heeeeeccCCCeEEEEeccc
Confidence            99999999999999999764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.40  E-value=1.7e-10  Score=104.96  Aligned_cols=117  Identities=23%  Similarity=0.310  Sum_probs=96.3

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      .+.||.+.|.++.|+-||.+++|+|.|.++|+|++++....   .....+|+..|.++++.|+   .++|++.|.+.++|
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~---~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW  243 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL---GCTGFGHSARVWACCFLPN---RIITVGEDCTCRVW  243 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc---CcccccccceeEEEEeccc---eeEEeccceEEEEE
Confidence            47899999999999999999999999999999999875432   2356799999999999985   78999999999999


Q ss_pred             eCCCCceeeeE--EecCceEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 021319           95 DARSGKCSQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDVR  138 (314)
Q Consensus        95 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (314)
                      +.+..+.. .+  .....+..+...+....+++++.|+.+++||+.
T Consensus       244 ~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  244 GVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            76533322 22  123345678888888899999999999999975

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=3.4e-12  Score=108.76  Aligned_cols=288  Identities=17%  Similarity=0.262  Sum_probs=191.5

Q ss_pred             ccceeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCc---eeeEEeecCCCCEEEEEEcCCCC
Q 021319            3 ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHA   79 (314)
Q Consensus         3 ~~~~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~   79 (314)
                      ..+..|+.+....+.||+..|+.+.--.+.+-+++++.|++|++|.+.+...+.   .....+..|+.+|.++.|-.+ .
T Consensus       718 t~~ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-l  796 (1034)
T KOG4190|consen  718 TDNLNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-L  796 (1034)
T ss_pred             CcccccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-c
Confidence            456778888888999999999999877777889999999999999987644322   245567899999999998764 3


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEe---cCc--eEEEEEccCCCEEEEE-eCCCcEEEEEccCCeEeeeecc-----
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAEL---SGE--NINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKF-----  148 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~---~~~--~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~-----  148 (314)
                      ..+  ++.|+-|.+||.--++...+...   ++.  .+.+-=+-+...+..+ +...+++++|.|........+.     
T Consensus       797 r~i--~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~  874 (1034)
T KOG4190|consen  797 RSI--ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG  874 (1034)
T ss_pred             cee--eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence            355  46789999999877765543321   122  2222222244445444 7788999999988765544332     


Q ss_pred             -CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEE-eeCCCcEEE
Q 021319          149 -GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL-WDISEMLCV  226 (314)
Q Consensus       149 -~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~v-wd~~~~~~~  226 (314)
                       ...+++++..+.|+.++++..+|.+.+.+.+.++.+......+-....++ .|..+.++....|.++.+ |...++...
T Consensus       875 Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh  953 (1034)
T KOG4190|consen  875 PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH  953 (1034)
T ss_pred             CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence             24578888899999999999999999999888776655543332222232 356677888888888888 887776555


Q ss_pred             EEeeecccCeEEEEEccCCcEEEEecCCceEEEEE-CCCC---CeEEEEe---ccCccceeEEcCCCCeeEEEecCC
Q 021319          227 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN-VHTG---RTVHQIP---CRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       227 ~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~-~~~~---~~~~~~~---~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      .+.+....+..-  .-.-|.-|+++.....+.||- ....   ..+.++.   ..+..++++--|-+.-+..|++.+
T Consensus       954 ~q~kpppepahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G 1028 (1034)
T KOG4190|consen  954 LQDKPPPEPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHG 1028 (1034)
T ss_pred             eccCCCCcchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCC
Confidence            444433222110  112366677777777777773 2111   1122222   356778888888665555566543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=7.9e-10  Score=94.47  Aligned_cols=275  Identities=18%  Similarity=0.276  Sum_probs=172.5

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC-----------CCcE
Q 021319           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-----------DKTV   91 (314)
Q Consensus        23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----------D~~v   91 (314)
                      =+-+.|||-|.+|+|=-.-| |.+|.=+..     ..+.-..|.+ |.-+.|+|.. .+|+|=+.           ...+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f-----~r~~RF~Hp~-Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l  284 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESF-----DRIQRFYHPG-VQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQL  284 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccH-----HHHHhccCCC-ceeeecCCcc-ceEEEecCCccccCcccCCCceE
Confidence            35789999999999987655 779953221     1111224655 7788999975 57777654           2688


Q ss_pred             EEEeCCCCceeeeEEec-CceE---EEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEE
Q 021319           92 RLWDARSGKCSQQAELS-GENI---NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~---~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  166 (314)
                      .|||+.+|...+.+..- +...   -..|+.|++++|.-.. .+|.|++..+..++..... -..+....|+|.++.++.
T Consensus       285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             EEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            99999999877766542 2211   3679999999987655 6799999877665543222 134677789999887765


Q ss_pred             EcC-----CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC-------CC---eEEEeeCCCcEEEEEeee
Q 021319          167 TTG-----NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-------DS---LVSLWDISEMLCVRTFTK  231 (314)
Q Consensus       167 ~~~-----~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-------dg---~i~vwd~~~~~~~~~~~~  231 (314)
                      -..     ..++.+...++.+.+++...+.-.-..+.|..+|.+|+.--.       .|   .+.|+.++.-...-....
T Consensus       364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve  443 (698)
T KOG2314|consen  364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE  443 (698)
T ss_pred             EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee
Confidence            432     235555666666655554444444455678888888874311       11   233444432221111112


Q ss_pred             cccCeEEEEEccCCcEEEEecCC---ceEEEEECCC-CC---eEEEEeccCccceeEEcCCCCeeEEEecCCcccccccc
Q 021319          232 LEWPVRTISFSHTGDYIASASED---LFIDISNVHT-GR---TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG  304 (314)
Q Consensus       232 ~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~-~~---~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~  304 (314)
                      ....|...+|-|.|..+++-+..   ..+.+|.+.+ +.   ++..+. +...+.|.|+|.|.+++.+..-..     .|
T Consensus       444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~-----~g  517 (698)
T KOG2314|consen  444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSR-----RG  517 (698)
T ss_pred             cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEeccc-----cc
Confidence            34568888999999887765543   5678887763 22   223332 356899999999999988775432     24


Q ss_pred             eEEecccc
Q 021319          305 VFRIYGFE  312 (314)
Q Consensus       305 ~~~~~~~~  312 (314)
                      .+.-|+..
T Consensus       518 ~l~F~D~~  525 (698)
T KOG2314|consen  518 DLEFYDTD  525 (698)
T ss_pred             ceEEEecc
Confidence            55555543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=6.3e-10  Score=95.08  Aligned_cols=250  Identities=16%  Similarity=0.292  Sum_probs=164.1

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEE-----EEeCCCcEEEEeCC
Q 021319           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIA-----TASGDKTVRLWDAR   97 (314)
Q Consensus        24 ~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~-----s~~~D~~v~iwd~~   97 (314)
                      .+.+|++|..+. +=-..+.|.+|+....   ......+  |...|..+.++|.. ...++     +.|.-..||||-..
T Consensus       129 W~~qfs~dEsl~-arlv~nev~f~~~~~f---~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~  202 (566)
T KOG2315|consen  129 WVPQFSIDESLA-ARLVSNEVQFYDLGSF---KTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP  202 (566)
T ss_pred             cccccccchhhh-hhhhcceEEEEecCCc---cceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence            477888876532 2223457899987652   2233333  56678888888862 33333     35667889999765


Q ss_pred             CCceee----eEEecCceEEEEEccCCCEEE-EEe--CCC---------cEEEEEccCCeEeeeeccCcceeeEEeccCC
Q 021319           98 SGKCSQ----QAELSGENINITYKPDGTHIA-VGN--RDD---------ELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (314)
Q Consensus        98 ~~~~~~----~~~~~~~~~~~~~~~~~~~l~-~~~--~d~---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      ......    .-.+....+.+.|++-|.-|. +.+  -|.         ++.++++.............++.++.|++.+
T Consensus       203 ~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~  282 (566)
T KOG2315|consen  203 EEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSG  282 (566)
T ss_pred             cccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCC
Confidence            322211    112345566788887766433 222  232         5677776644444444446789999999999


Q ss_pred             CeEEEEcC--CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC---CeEEEeeCCCcEEEEEeeecccCe
Q 021319          162 EMFFLTTG--NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPV  236 (314)
Q Consensus       162 ~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v  236 (314)
                      ..|++..+  ...+.+++++. .++..+  -+++=+++-|+|.|++++.++-+   |.|-+||+.+.+++..+...  ..
T Consensus       283 ~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~t  357 (566)
T KOG2315|consen  283 REFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NT  357 (566)
T ss_pred             CEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--Cc
Confidence            88877654  46777787643 223222  23445788999999998877765   78999999998887776543  34


Q ss_pred             EEEEEccCCcEEEEecC------CceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319          237 RTISFSHTGDYIASASE------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       237 ~~~~~sp~~~~l~s~s~------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~  285 (314)
                      .-+.|+|||++++|++.      |..++||++ +|+++++..-......+.|-|-
T Consensus       358 t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRPF  411 (566)
T ss_pred             eEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhHhHhheeeeec
Confidence            56789999999999976      677899987 6677655332226788888874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=4.9e-08  Score=79.75  Aligned_cols=264  Identities=15%  Similarity=0.236  Sum_probs=170.1

Q ss_pred             CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEeC--CCCceeee--EEecCc-eE
Q 021319           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---DKTVRLWDA--RSGKCSQQ--AELSGE-NI  112 (314)
Q Consensus        41 D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---D~~v~iwd~--~~~~~~~~--~~~~~~-~~  112 (314)
                      ++-|.+|++++... .....++-.+...++-|+|+|+. +.|.++-.   ++.|--+.+  ++|+....  ....+. ..
T Consensus        15 s~gI~v~~ld~~~g-~l~~~~~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTG-ELSLLQLVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCccc-ccchhhhccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            57899999985432 33333455667778889999875 46666654   466765544  44664432  223333 36


Q ss_pred             EEEEccCCCEEEEEe-CCCcEEEEEccCC-e---EeeeeccCc----------ceeeEEeccCCCeEEEEc-CCceEEEE
Q 021319          113 NITYKPDGTHIAVGN-RDDELTILDVRKF-K---PIHRRKFGY----------EVNEIAWNMTGEMFFLTT-GNGTVEVL  176 (314)
Q Consensus       113 ~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~---~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~g~~~~~  176 (314)
                      -++.++++++|+++. ..+.|.++-++.. .   ++...++..          .+....+.|+++++++.. +-.++.+|
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            688999999988765 4667888877542 1   111222211          256778899998887764 55788889


Q ss_pred             eCCCCCc--eeee-eecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCc----EEEEEeee----c--ccCeEEEEEc
Q 021319          177 TYPSLRP--LDTV-VAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEM----LCVRTFTK----L--EWPVRTISFS  242 (314)
Q Consensus       177 ~~~~~~~--~~~~-~~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~----~~~~~~~~----~--~~~v~~~~~s  242 (314)
                      ++...+.  .... ..-..+...|.|+|++++.. +.-.+++|.+|.....    .+++.+..    +  .....+|..+
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis  252 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS  252 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence            8874432  1111 12345689999999999865 5556899999998763    22333221    1  1246778999


Q ss_pred             cCCcEEEEecC-CceEEEEECCC-CCeEEEE---eccC-ccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          243 HTGDYIASASE-DLFIDISNVHT-GRTVHQI---PCRA-AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       243 p~~~~l~s~s~-d~~v~v~~~~~-~~~~~~~---~~~~-~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |+|++|..... ...|.++.+.. +..+...   +..+ .-+...|+|++++|+.++.+.       +.+.+|..++
T Consensus       253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s-------d~i~vf~~d~  322 (346)
T COG2706         253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS-------DNITVFERDK  322 (346)
T ss_pred             CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC-------CcEEEEEEcC
Confidence            99999997753 23677777753 2333222   2223 478999999999999999876       4566665543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.29  E-value=2.3e-08  Score=96.84  Aligned_cols=241  Identities=9%  Similarity=0.052  Sum_probs=155.6

Q ss_pred             EEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCceeeEEeec------------CCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           24 HSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRG------------HADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        24 ~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~------------h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ..++++++ +..+++-..++.|++||.+..   ........+            +-.....++++++++.+.++-.....
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence            46778775 567777778889999987531   111111001            11235678888875434455555678


Q ss_pred             EEEEeCCCCceeeeEEe-----------------cCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeee------
Q 021319           91 VRLWDARSGKCSQQAEL-----------------SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRR------  146 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~------  146 (314)
                      |+++|..++........                 -.....++++| ++..+++...++.|.+||........-.      
T Consensus       648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            99999877654221110                 11234688898 4555566677888999998665322100      


Q ss_pred             ---------ccCcceeeEEeccCCC-eEEEEcCCceEEEEeCCCCCceee-------------ee--------ecccceE
Q 021319          147 ---------KFGYEVNEIAWNMTGE-MFFLTTGNGTVEVLTYPSLRPLDT-------------VV--------AHTAGCY  195 (314)
Q Consensus       147 ---------~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~-------------~~--------~~~~~i~  195 (314)
                               ........+++++++. .+++-..++.+++|+.........             +-        ..-..+.
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                     0012345688999988 555666789999999765331100             00        0011356


Q ss_pred             EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-------------cccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-------------LEWPVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       196 ~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-------------~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      .++++++|+++++-..++.|++||..++........             .-.....++++|+|+++++-+.++.|++||.
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            899999999888888899999999987765432210             0013567999999999999999999999999


Q ss_pred             CCCCe
Q 021319          263 HTGRT  267 (314)
Q Consensus       263 ~~~~~  267 (314)
                      .+++.
T Consensus       888 ~~~~~  892 (1057)
T PLN02919        888 NKGEA  892 (1057)
T ss_pred             CCCcc
Confidence            98765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.27  E-value=4e-10  Score=96.78  Aligned_cols=166  Identities=17%  Similarity=0.153  Sum_probs=133.3

Q ss_pred             cCCCEEEEEeCCCcEEEEEccCCeEeeeecc----CcceeeEEec--------------------cCCCeEEEEcCCceE
Q 021319          118 PDGTHIAVGNRDDELTILDVRKFKPIHRRKF----GYEVNEIAWN--------------------MTGEMFFLTTGNGTV  173 (314)
Q Consensus       118 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~--------------------~~~~~~~~~~~~g~~  173 (314)
                      |...++|....||.+++||..+.+....+..    .....+..|.                    .+...++.+...|.+
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4566889999999999999987765433321    1222233331                    223467788889999


Q ss_pred             EEEeCCCCCceeeee--ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319          174 EVLTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  251 (314)
Q Consensus       174 ~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  251 (314)
                      .+|+....+....+.  .|-+.++++.++.+-..|.+++.|+.+..|+......+...+...-.+.+++.+||+.+|++|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999987766554443  688899999999999999999999999999999988888887777789999999999999999


Q ss_pred             cCCceEEEEECCCCCeEEEEec-cCccceeEEcCC
Q 021319          252 SEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPK  285 (314)
Q Consensus       252 s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~  285 (314)
                      |..  |.+||..+++.+..+.+ .++|+++.|..+
T Consensus       163 s~~--ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  163 SRQ--IKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             cce--EEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence            876  99999999999999874 678999999887

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.26  E-value=1.3e-09  Score=86.30  Aligned_cols=164  Identities=15%  Similarity=0.226  Sum_probs=121.7

Q ss_pred             EEEEEeCCCcEEEEEccCCe------EeeeeccCc-ceeeEEeccCCCeEEEEcCCceEEEEeCCCC--Cceeeeeeccc
Q 021319          122 HIAVGNRDDELTILDVRKFK------PIHRRKFGY-EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTA  192 (314)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~  192 (314)
                      .++.....|.|.++......      ++...+... ..-++.|++.+..++++..+|.+.+......  +..+....|..
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~  166 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF  166 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence            34555667777777543221      111122221 2556788999999999999999996655433  34457789999


Q ss_pred             ceEEEEECCC-CCEEEEeeCCCeEEEeeCC-CcEEEEE-eeecccCeEEEEEcc-CCcEEEEecCCceEEEEECC-CCCe
Q 021319          193 GCYCIAIDPM-GRYFAVGSADSLVSLWDIS-EMLCVRT-FTKLEWPVRTISFSH-TGDYIASASEDLFIDISNVH-TGRT  267 (314)
Q Consensus       193 ~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~-~~~~~~~-~~~~~~~v~~~~~sp-~~~~l~s~s~d~~v~v~~~~-~~~~  267 (314)
                      +++...|+.. .+.+.+|+.|+.+..||++ ...++.. -+.|...|.+|.-+| .+.+++||+-|-.|++||.+ -+++
T Consensus       167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence            9999999764 4688899999999999998 4444433 456888899998884 57899999999999999998 5788


Q ss_pred             EEEEeccCccceeEEcCC
Q 021319          268 VHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       268 ~~~~~~~~~i~~v~~~~~  285 (314)
                      +..-+..+.|..+.++|.
T Consensus       247 l~~~~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  247 LFKAKVGGGVWRIKHHPE  264 (339)
T ss_pred             cccCccccceEEEEecch
Confidence            877667788999999994

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.26  E-value=2.9e-08  Score=96.10  Aligned_cols=233  Identities=10%  Similarity=0.047  Sum_probs=150.2

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec---------------CceEEEEEccCCCEEEEEe-CCCcEE
Q 021319           70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS---------------GENINITYKPDGTHIAVGN-RDDELT  133 (314)
Q Consensus        70 ~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~-~d~~i~  133 (314)
                      ..+++++.++.++++-+..+.|+++|... .........               ..+..+++.++++.|+++. ..+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35778776667888888899999999864 433222110               1235688888888776654 456788


Q ss_pred             EEEccCCeEeeeec-----------------cCcceeeEEecc-CCCeEEEEcCCceEEEEeCCCCCceeeeee------
Q 021319          134 ILDVRKFKPIHRRK-----------------FGYEVNEIAWNM-TGEMFFLTTGNGTVEVLTYPSLRPLDTVVA------  189 (314)
Q Consensus       134 i~d~~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------  189 (314)
                      .+|+.+.....-..                 .......+++++ ++..+++...++.+++|+...... ..+.+      
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v-~~~~G~G~~~~  728 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT-RVFSGDGYERN  728 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE-EEEecCCcccc
Confidence            88886643211000                 011345788888 566667777888999888754321 11111      


Q ss_pred             ---------cccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEEEEEe-------------eec--------ccCeEE
Q 021319          190 ---------HTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCVRTF-------------TKL--------EWPVRT  238 (314)
Q Consensus       190 ---------~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~-------------~~~--------~~~v~~  238 (314)
                               .-..+..++++|+++.|+ +-..++.|++||+.++......             ...        -.....
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence                     112456799999998554 4455689999999765421110             000        012357


Q ss_pred             EEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc--------------CccceeEEcCCCCeeEEEecCCcccccccc
Q 021319          239 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------------AAMNSVEWNPKYNLLAYAGDDKNKYQADEG  304 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~--------------~~i~~v~~~~~~~~la~~~~d~~~~~~~~~  304 (314)
                      ++++|+|.++++-+.++.|++||..++.........              .....|+++|+++++++-+.+        +
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N--------n  880 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN--------S  880 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC--------C
Confidence            899999999999999999999999887655332211              146689999999877655433        5


Q ss_pred             eEEecccc
Q 021319          305 VFRIYGFE  312 (314)
Q Consensus       305 ~~~~~~~~  312 (314)
                      .|++|+++
T Consensus       881 ~Irvid~~  888 (1057)
T PLN02919        881 LIRYLDLN  888 (1057)
T ss_pred             EEEEEECC
Confidence            78888774

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=7.1e-11  Score=112.77  Aligned_cols=197  Identities=17%  Similarity=0.277  Sum_probs=144.3

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec--CceEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRK  139 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  139 (314)
                      .+.+-..|.++.-+|... +-+||+.||.|++|....++.+......  .....+.|+.+|+.+.++..||.+.+|... 
T Consensus      2204 ~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             eecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            444556788888888765 5569999999999998877765544333  334468899999999999999999999987 


Q ss_pred             CeEeeeec-cCcceeeEEeccCCCeEEEE---cCCceEEEEeCC--CCCceeeeeecccceEEEEECCCCCEEEEeeCCC
Q 021319          140 FKPIHRRK-FGYEVNEIAWNMTGEMFFLT---TGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS  213 (314)
Q Consensus       140 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg  213 (314)
                      +++....+ +.....+..|-.  ..++.+   ..++++.+||..  .....- -..|.++++++++-|.-+.|++|+++|
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-eeecCCCceEEEEcCcceEEEecCCcC
Confidence            44443332 233334443322  333332   356788888852  222221 268999999999999999999999999


Q ss_pred             eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319          214 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       214 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~  273 (314)
                      .|++||++..+.+++++.         +. .-.++++|+..|.++||++..-..++.++.
T Consensus      2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            999999998776666543         33 568899999999999999988777776653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.25  E-value=3.1e-07  Score=75.12  Aligned_cols=264  Identities=17%  Similarity=0.222  Sum_probs=167.5

Q ss_pred             eecccccEEEEEECCCCCEEEEeeC---CCcEEEeecCCCCCCceee---EEeecCCCCEEEEEEcCCCCCEEEEEeC-C
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKD---IELRGHADSVDQLCWDPKHADLIATASG-D   88 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~---D~~v~iw~~~~~~~~~~~~---~~~~~h~~~v~~l~~~~~~~~~l~s~~~-D   88 (314)
                      +-.+.+..+-|+|+|++++|.++-.   +|.|-.|.++... +....   ..+.|+  +-.-++.++++ ++++++.- -
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~~~~~g~--~p~yvsvd~~g-~~vf~AnY~~  110 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNRQTLPGS--PPCYVSVDEDG-RFVFVANYHS  110 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeeccccCCC--CCeEEEECCCC-CEEEEEEccC
Confidence            4456778889999999999888753   5788888887532 12211   122222  22556778765 46655544 5


Q ss_pred             CcEEEEeCCC-Ccee---eeEEecCc----------eEEEEEccCCCEEEEEeC-CCcEEEEEccCCeEee----eeccC
Q 021319           89 KTVRLWDARS-GKCS---QQAELSGE----------NINITYKPDGTHIAVGNR-DDELTILDVRKFKPIH----RRKFG  149 (314)
Q Consensus        89 ~~v~iwd~~~-~~~~---~~~~~~~~----------~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~----~~~~~  149 (314)
                      +.|.++-++. |...   ......+.          .-...+.|++++|++... ...|.+|++...+...    ..+.+
T Consensus       111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G  190 (346)
T COG2706         111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG  190 (346)
T ss_pred             ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence            8899998755 3321   22222111          234568999999887653 4569999988554322    23445


Q ss_pred             cceeeEEeccCCCeEEEEc-CCceEEEEeCCCC-Cceeeeee---------cccceEEEEECCCCCEEEEeeCC-CeEEE
Q 021319          150 YEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSL-RPLDTVVA---------HTAGCYCIAIDPMGRYFAVGSAD-SLVSL  217 (314)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~---------~~~~i~~i~~~~~~~~l~t~~~d-g~i~v  217 (314)
                      .-.+.++|+|++++..+.+ -+++|.+|.+... ..+..++.         .....-+|.++++|++|.++.+- ..|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            6678999999999877665 4889999987653 22222221         12346789999999999977653 47888


Q ss_pred             eeCCCc-EEEE---EeeecccCeEEEEEccCCcEEEEecCCc-eEEEEEC--CCCCeEEEE--eccCccceeEEc
Q 021319          218 WDISEM-LCVR---TFTKLEWPVRTISFSHTGDYIASASEDL-FIDISNV--HTGRTVHQI--PCRAAMNSVEWN  283 (314)
Q Consensus       218 wd~~~~-~~~~---~~~~~~~~v~~~~~sp~~~~l~s~s~d~-~v~v~~~--~~~~~~~~~--~~~~~i~~v~~~  283 (314)
                      |.+... ..+.   ....+....+...|+|++++|+.+.+++ .+.++..  .+|++-...  .......||.|.
T Consensus       271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             EEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            888643 1122   2222334468899999999999998763 4777755  456543222  123355677765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=3.1e-08  Score=86.74  Aligned_cols=201  Identities=9%  Similarity=-0.029  Sum_probs=122.9

Q ss_pred             cEEEEeCCCCceeeeEEecCceEEEEEccCCCE-EEEEeC---CCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTH-IAVGNR---DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      .|.+-|..... .+.....+......|+|||+. ++..+.   ...|.++|+.+.+...-...........|+|+|..++
T Consensus       170 ~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la  248 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL  248 (419)
T ss_pred             eEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence            44444554332 232323345567889999985 554333   3458888987765544333334455678999998776


Q ss_pred             EEc---CCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee-CCC--eEEEeeCCCcEEEEEeeecccCeEEE
Q 021319          166 LTT---GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADS--LVSLWDISEMLCVRTFTKLEWPVRTI  239 (314)
Q Consensus       166 ~~~---~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~  239 (314)
                      ...   .+..+.+++....+ ...+..+........|+|||+.|+-.+ ..+  .|.+.|+..+...+.......   ..
T Consensus       249 ~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~---~~  324 (419)
T PRK04043        249 LTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN---NS  324 (419)
T ss_pred             EEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc---Cc
Confidence            543   23566666765544 233333333234557999998766444 344  577777776654332211111   24


Q ss_pred             EEccCCcEEEEecCC---------ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319          240 SFSHTGDYIASASED---------LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       240 ~~sp~~~~l~s~s~d---------~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      .|||+|++|+..+..         ..|.+.|+.++.. +.+..........|+|||.+|++...++
T Consensus       325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEEccC
Confidence            899999998866543         3678888877754 4444333445689999999999888654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.22  E-value=1.5e-09  Score=87.62  Aligned_cols=241  Identities=15%  Similarity=0.223  Sum_probs=164.0

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC-CCCceeeeE--EecCceEEEEEccCCCEEEEEeCCCcEEEEEc
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA-RSGKCSQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDV  137 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~-~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  137 (314)
                      .++||.+.|++...-|.+. -+++.+.|.++|+|-- +.++.....  ........+.+.++...|++|-..+++.-+.+
T Consensus        19 ~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~   97 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL   97 (404)
T ss_pred             hhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence            5789999999988888764 5679999999999953 344433322  23455667889999999999999999887765


Q ss_pred             cC----CeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC
Q 021319          138 RK----FKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (314)
Q Consensus       138 ~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d  212 (314)
                      ..    ....+.. .+...+..+.|+.....++..+.|-.+..--.+....+..+.. ....+++.++-  .+...|...
T Consensus        98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~--~~~fvGd~~  174 (404)
T KOG1409|consen   98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDA--LYAFVGDHS  174 (404)
T ss_pred             hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceee--EEEEecccc
Confidence            32    2222221 2334566777777777777776665443333333333322211 11112222222  266778888


Q ss_pred             CeEEEeeCCC--cEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC--CCeEEEEeccCccceeEEcCCCCe
Q 021319          213 SLVSLWDISE--MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT--GRTVHQIPCRAAMNSVEWNPKYNL  288 (314)
Q Consensus       213 g~i~vwd~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~--~~~~~~~~~~~~i~~v~~~~~~~~  288 (314)
                      |.|..-.+..  ...+.++.+|..++.+++|.|..+.|.+++.|..+.+||+.-  +....-..+...|..+..-+.-+.
T Consensus       175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~  254 (404)
T KOG1409|consen  175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ  254 (404)
T ss_pred             cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence            8877776643  445678889999999999999999999999999999999853  444444455667888877777788


Q ss_pred             eEEEecCCcccccccceEEeccccC
Q 021319          289 LAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       289 la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |.+++.|+        -+-+|+.+.
T Consensus       255 l~S~~edg--------~i~~w~mn~  271 (404)
T KOG1409|consen  255 LISCGEDG--------GIVVWNMNV  271 (404)
T ss_pred             eeeccCCC--------eEEEEeccc
Confidence            88999874        566777653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.21  E-value=8.7e-10  Score=87.18  Aligned_cols=185  Identities=22%  Similarity=0.214  Sum_probs=123.3

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC-CCce
Q 021319           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGKC  101 (314)
Q Consensus        23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~  101 (314)
                      -.++.|++.+..++++..+|.+.+-+.....  .......+.|.-+..-+.|+..+++++.+||.|+.+.-||+| .+.+
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~  201 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF  201 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceee--eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence            3467899999999999999999844332111  111235678999999999998888999999999999999998 3444


Q ss_pred             eee--EEecCceEEEEEc-cCCCEEEEEeCCCcEEEEEcc-CCeEeeeeccCcceeeEEeccCCC--eEEEEcCCceEEE
Q 021319          102 SQQ--AELSGENINITYK-PDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGYEVNEIAWNMTGE--MFFLTTGNGTVEV  175 (314)
Q Consensus       102 ~~~--~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~  175 (314)
                      +..  ......+.++.-+ |++.++++|+.|..|.+||.| ..+|+.....+..+.-+.++|...  .++++..+| ..+
T Consensus       202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki  280 (339)
T KOG0280|consen  202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKI  280 (339)
T ss_pred             eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceE
Confidence            332  2233445555554 467899999999999999999 567888777777888888888654  222222333 233


Q ss_pred             EeCCC--CC---ceeeeeecccceEEEEECCCCCEEEEee
Q 021319          176 LTYPS--LR---PLDTVVAHTAGCYCIAIDPMGRYFAVGS  210 (314)
Q Consensus       176 ~~~~~--~~---~~~~~~~~~~~i~~i~~~~~~~~l~t~~  210 (314)
                      .+...  .+   .......|.+-.+.-+|+.....+||++
T Consensus       281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             EEecccccchheeeeccccccceeeccccccccceeeeee
Confidence            33221  11   1122234544455556655556788765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=8.9e-10  Score=91.91  Aligned_cols=251  Identities=15%  Similarity=0.129  Sum_probs=173.2

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC-CCcEEEEeC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-DKTVRLWDA   96 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-D~~v~iwd~   96 (314)
                      -|++.|+.|.-+ -.+++.+++.||.++.|.-.. ..+......+..|...|..++.+-+ +-++.|.+. |..+|++|+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~-isGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR-ISGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCC-ccceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEe
Confidence            388888888643 467999999999999997542 1111122345678888888887765 457788777 999999998


Q ss_pred             CCCceeeeEEecCceEEEEEcc-CC---CEEEEE-eCCCcEEEEEccCCe-E--eeeeccCcceeeEEeccCCCeEEEEc
Q 021319           97 RSGKCSQQAELSGENINITYKP-DG---THIAVG-NRDDELTILDVRKFK-P--IHRRKFGYEVNEIAWNMTGEMFFLTT  168 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~-~~---~~l~~~-~~d~~i~i~d~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (314)
                      .+-.......+..-+-.+.|.. .|   ..++++ ..++.+.++|.+..- +  .....+..++..+.+.+.++.+++..
T Consensus        84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            7765443333332222333322 22   244444 456779999976432 2  23344567888999999999999999


Q ss_pred             CCceEEEEeCCC-CCceee--------------eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee--
Q 021319          169 GNGTVEVLTYPS-LRPLDT--------------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--  231 (314)
Q Consensus       169 ~~g~~~~~~~~~-~~~~~~--------------~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--  231 (314)
                      ..|.+..|..+. .+....              +.--...+.++.|+|++..+++-+.|..|++++.++++.++.+..  
T Consensus       164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~  243 (558)
T KOG0882|consen  164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL  243 (558)
T ss_pred             ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence            999999998763 211111              111234578999999999999999999999999988765443311  


Q ss_pred             ------------------------------cc-cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319          232 ------------------------------LE-WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       232 ------------------------------~~-~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                                                    +. ..-..+.|...+.+|+.|+.=| |+|.++.+++..+.+.
T Consensus       244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                                          11 1234578999999999998877 8999999988877663

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.16  E-value=6.4e-07  Score=73.16  Aligned_cols=213  Identities=16%  Similarity=0.216  Sum_probs=140.1

Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEc-cCCCEEEEEeCCCcEEEEEccCCeEe--eeec
Q 021319           71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYK-PDGTHIAVGNRDDELTILDVRKFKPI--HRRK  147 (314)
Q Consensus        71 ~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~  147 (314)
                      +.+|.+..+.++++--..+.|..||..++.... ..... ...+.+. +++ .++++.. +.+.++|+.+.+..  ....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEeecc
Confidence            567887556777777788999999998775432 33333 6667777 564 4555544 44566698776433  2221


Q ss_pred             ----cCcceeeEEeccCCCeEEEEcCC--------ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-EeeCCCe
Q 021319          148 ----FGYEVNEIAWNMTGEMFFLTTGN--------GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGSADSL  214 (314)
Q Consensus       148 ----~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~  214 (314)
                          .....+.+++.++|+.+++....        |.+..++.. .+ .......-...+.|+|+|+++.|+ +-+..+.
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchheeecccccce
Confidence                23457889999999988776543        556666655 22 333333345678999999998765 5566788


Q ss_pred             EEEeeCCC-cE---EEEEeeec---ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc-CccceeEEc-CC
Q 021319          215 VSLWDISE-ML---CVRTFTKL---EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWN-PK  285 (314)
Q Consensus       215 i~vwd~~~-~~---~~~~~~~~---~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~-~~i~~v~~~-~~  285 (314)
                      |..+++.. ..   ..+.+...   ......+++.++|++.++.-..+.|.+++.. |+.+..+... ..+++++|. |+
T Consensus       158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~  236 (246)
T PF08450_consen  158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD  236 (246)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred             eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence            99999852 21   12222221   2236789999999998888888999999987 8888887654 578999994 66


Q ss_pred             CCeeE
Q 021319          286 YNLLA  290 (314)
Q Consensus       286 ~~~la  290 (314)
                      .+.|.
T Consensus       237 ~~~L~  241 (246)
T PF08450_consen  237 GKTLY  241 (246)
T ss_dssp             SSEEE
T ss_pred             CCEEE
Confidence            55443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.15  E-value=9.5e-08  Score=83.24  Aligned_cols=253  Identities=15%  Similarity=0.131  Sum_probs=148.7

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCce
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN  111 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~  111 (314)
                      +..++.++.|+.+..+|.+++..  .....+.   ..+.+.-.. . ++.++.+..++.+..+|..+|+..-........
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~---~~~~~~p~v-~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~  177 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKE--LWRAKLS---SEVLSPPLV-A-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPA  177 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcE--eeeeccC---ceeecCCEE-E-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence            45666777788888887755331  1111111   112111001 1 245667788999999999999876555443322


Q ss_pred             EEEE--Ecc--CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc--------eeeEE--eccCCCeEEEEcCCceEEEEe
Q 021319          112 INIT--YKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--------VNEIA--WNMTGEMFFLTTGNGTVEVLT  177 (314)
Q Consensus       112 ~~~~--~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~g~~~~~~  177 (314)
                      ....  .+|  .+..++.+..++.+..+|+++.+.+........        ...+.  ....+..++++..+|.+..++
T Consensus       178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD  257 (377)
T ss_pred             eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence            1110  000  134677888889999999988876654322110        00000  011345677777889999999


Q ss_pred             CCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC-eEEEEEccCCcEEEEecCCce
Q 021319          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASEDLF  256 (314)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~d~~  256 (314)
                      ..+.+.+.....  .......  .++..+++++.+|.+..+|..+++.+-........ .....  ..+..|+.++.||.
T Consensus       258 ~~tG~~~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--i~g~~l~~~~~~G~  331 (377)
T TIGR03300       258 LRSGRVLWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA--VVGGYLVVGDFEGY  331 (377)
T ss_pred             CCCCcEEEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE--EECCEEEEEeCCCE
Confidence            877665443321  1111222  24567777889999999999988776544222111 11111  14678899999999


Q ss_pred             EEEEECCCCCeEEEEeccC-ccc-eeEEcCCCCeeEEEecCCccc
Q 021319          257 IDISNVHTGRTVHQIPCRA-AMN-SVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       257 v~v~~~~~~~~~~~~~~~~-~i~-~v~~~~~~~~la~~~~d~~~~  299 (314)
                      +.++|..+|+.+.+++... .+. +-... ++ .|..++.|+.+|
T Consensus       332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~  374 (377)
T TIGR03300       332 LHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLY  374 (377)
T ss_pred             EEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEE
Confidence            9999999999998876433 232 22332 33 466788786655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.14  E-value=7.3e-09  Score=83.79  Aligned_cols=235  Identities=19%  Similarity=0.321  Sum_probs=150.3

Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc---eeee--E-------------EecCceEEEEEccCC--CEEEE
Q 021319           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK---CSQQ--A-------------ELSGENINITYKPDG--THIAV  125 (314)
Q Consensus        66 ~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~---~~~~--~-------------~~~~~~~~~~~~~~~--~~l~~  125 (314)
                      .+-|.++.|... +++|++|..+|.|-++.-....   ....  .             +....+..+.|.+++  ..+.+
T Consensus        25 adiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   25 ADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            345778888876 5799999999999999643221   1111  1             112233457777765  46778


Q ss_pred             EeCCCcEEEEEccCCeEee-----------------------------------e--eccCcceeeEEeccCCCeEEEEc
Q 021319          126 GNRDDELTILDVRKFKPIH-----------------------------------R--RKFGYEVNEIAWNMTGEMFFLTT  168 (314)
Q Consensus       126 ~~~d~~i~i~d~~~~~~~~-----------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~  168 (314)
                      .+.|.+|++|-++......                                   .  -.+.+.++++..+.+++.++ +.
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence            8899999999875321000                                   0  01233456677776666655 44


Q ss_pred             CCceEEEEeCCCCC-ceeeee--e-----cccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcE-EE---EEeeec---
Q 021319          169 GNGTVEVLTYPSLR-PLDTVV--A-----HTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEML-CV---RTFTKL---  232 (314)
Q Consensus       169 ~~g~~~~~~~~~~~-~~~~~~--~-----~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~-~~---~~~~~~---  232 (314)
                      .+=++.+|.+.-.. ....+.  .     -..-|++..|+|. ..+++-.++.|+|++-||+... |-   +.+...   
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            56678888775322 111111  1     1234788889995 4678888899999999998432 21   122211   


Q ss_pred             ---------ccCeEEEEEccCCcEEEEecCCceEEEEEC-CCCCeEEEEecc-------------Cc---cceeEEcCCC
Q 021319          233 ---------EWPVRTISFSHTGDYIASASEDLFIDISNV-HTGRTVHQIPCR-------------AA---MNSVEWNPKY  286 (314)
Q Consensus       233 ---------~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~-~~~~~~~~~~~~-------------~~---i~~v~~~~~~  286 (314)
                               -..|+.+.|+++|+|++|-+- ..|.+||+ +..+++..++-.             ..   -..++|+-++
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence                     135788999999999986432 56999999 567777666421             12   2378999998


Q ss_pred             CeeEEEecCCcccccccceEEeccc
Q 021319          287 NLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       287 ~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      ..++|||-.        ..+++|++
T Consensus       342 ~~v~TGsy~--------n~frvf~~  358 (433)
T KOG1354|consen  342 SYVMTGSYN--------NVFRVFNL  358 (433)
T ss_pred             ceEeccccc--------ceEEEecC
Confidence            899988854        46788875

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.14  E-value=9.8e-10  Score=90.35  Aligned_cols=157  Identities=13%  Similarity=0.214  Sum_probs=111.6

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEccCCeE----eeeeccCcceeeEEeccCCCeEEEEcCC---ceEEEEeCCCCCceee
Q 021319          114 ITYKPDGTHIAVGNRDDELTILDVRKFKP----IHRRKFGYEVNEIAWNMTGEMFFLTTGN---GTVEVLTYPSLRPLDT  186 (314)
Q Consensus       114 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~  186 (314)
                      ...++++++++++..+....+++.+...+    +...........+.+........++...   ..+.++.... .+...
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~~~  146 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GRCEP  146 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-cCcch
Confidence            44567888888888888877777654332    2222223333444444444444444443   4444444433 23344


Q ss_pred             eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe-eecccCeEEEEEccCCcEEEEecCCceEEEEECCCC
Q 021319          187 VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  265 (314)
Q Consensus       187 ~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~  265 (314)
                      +.+|-.-++.++++||.+.+.++++|..|++-.......+..| .+|+.-|..++.-++ +.|+|||.|+.+++||..+|
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence            5689999999999999999999999999999998777666655 468888999998664 44999999999999999999


Q ss_pred             CeEEEEe
Q 021319          266 RTVHQIP  272 (314)
Q Consensus       266 ~~~~~~~  272 (314)
                      +.++.++
T Consensus       226 k~L~t~d  232 (390)
T KOG3914|consen  226 KLLDTCD  232 (390)
T ss_pred             Ccccccc
Confidence            9987764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.13  E-value=1.2e-07  Score=80.67  Aligned_cols=278  Identities=17%  Similarity=0.218  Sum_probs=169.5

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCc---------------EEEeecCCCCCCceeeEEeecCCCC--EE-EEEEcCCCCCE
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQT---------------ARVWHIEPHGHGKVKDIELRGHADS--VD-QLCWDPKHADL   81 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~---------------v~iw~~~~~~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~~   81 (314)
                      ...|..+.|||.+++|.|=+....               +.+||..++.    ....+.+-+.+  .. -+.|+-++ .+
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~----iv~sf~~~~q~~~~Wp~~k~s~~D-~y  145 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM----IVFSFNGISQPYLGWPVLKFSIDD-KY  145 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce----eEeeccccCCcccccceeeeeecc-hh
Confidence            346899999999999999665554               8899887532    22223333332  22 34555443 23


Q ss_pred             EEEEeCCCcEEEEeCCCCceee--eEEec-CceEEEEEccCCC--EEE-----EEeCCCcEEEEEccCCeEeeeec-cCc
Q 021319           82 IATASGDKTVRLWDARSGKCSQ--QAELS-GENINITYKPDGT--HIA-----VGNRDDELTILDVRKFKPIHRRK-FGY  150 (314)
Q Consensus        82 l~s~~~D~~v~iwd~~~~~~~~--~~~~~-~~~~~~~~~~~~~--~l~-----~~~~d~~i~i~d~~~~~~~~~~~-~~~  150 (314)
                      +|-- -...+.|+++ ++....  ...+. .......++|.++  .|+     .......+.+|.+.....+.... ...
T Consensus       146 ~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~  223 (561)
T COG5354         146 VARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV  223 (561)
T ss_pred             hhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee
Confidence            3322 2257888886 333221  11122 2334566777543  222     13345667888876555544322 223


Q ss_pred             ceeeEEeccCCCeEEEEc-----------CCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee--CCCeEEE
Q 021319          151 EVNEIAWNMTGEMFFLTT-----------GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS--ADSLVSL  217 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~--~dg~i~v  217 (314)
                      .-..+.|++.|+++++-.           +..+++++++.... +.....-.++|...+|.|.++.+++.+  .+..+.+
T Consensus       224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~  302 (561)
T COG5354         224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSV  302 (561)
T ss_pred             cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceee
Confidence            455678899988776532           23556666665322 222223467889999999998876554  6778999


Q ss_pred             eeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC---ceEEEEECCCCCeEE-EEeccCccceeEEcCCCCeeEEEe
Q 021319          218 WDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVH-QIPCRAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       218 wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~~~~~~-~~~~~~~i~~v~~~~~~~~la~~~  293 (314)
                      +|++... .  +-..+.+=..+-|||.+++++.++-|   |.+.+||.....+.- .+ ......-+.|+|++.++-++-
T Consensus       303 ~~lr~Nl-~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-~~~n~s~~~wspd~qF~~~~~  378 (561)
T COG5354         303 FDLRGNL-R--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-NGLNTSYCDWSPDGQFYDTDT  378 (561)
T ss_pred             cccccce-E--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe-ecCCceEeeccCCceEEEecC
Confidence            9998762 2  22344455668899999999998866   789999987644333 33 233456679999998876544


Q ss_pred             cCCcccccccceEEeccc
Q 021319          294 DDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       294 ~d~~~~~~~~~~~~~~~~  311 (314)
                       +..+ ...+.-++||++
T Consensus       379 -ts~k-~~~Dn~i~l~~v  394 (561)
T COG5354         379 -TSEK-LRVDNSIKLWDV  394 (561)
T ss_pred             -CCcc-cccCcceEEEEe
Confidence             2222 345677899986

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=2.4e-07  Score=81.25  Aligned_cols=207  Identities=13%  Similarity=0.064  Sum_probs=122.4

Q ss_pred             CEEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEe-CC--CcEEEEEccCCe
Q 021319           68 SVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RD--DELTILDVRKFK  141 (314)
Q Consensus        68 ~v~~l~~~~~~~~~l~s~~~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d--~~i~i~d~~~~~  141 (314)
                      ......|+|++..+++..+.   +..|.++|+.+++........+......|+|||+.++... .+  ..|.++|+...+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            67788999997654543333   3568888998887655544445455678999998877543 33  457777876654


Q ss_pred             EeeeeccCcceeeEEeccCCCeEEEEcC-Cc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC------
Q 021319          142 PIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD------  212 (314)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d------  212 (314)
                      ...-...........|+|+|+.+++.+. .+  .+.++++...+...... ...  ....|+|+|+.++.....      
T Consensus       269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~  345 (419)
T PRK04043        269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFG  345 (419)
T ss_pred             EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccC
Confidence            3322222222334579999987776653 33  56666665544322211 111  224899999988766543      


Q ss_pred             ---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC-c--eEEEEECCCCCeEEEEec-cCcccee
Q 021319          213 ---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED-L--FIDISNVHTGRTVHQIPC-RAAMNSV  280 (314)
Q Consensus       213 ---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-~--~v~v~~~~~~~~~~~~~~-~~~i~~v  280 (314)
                         ..|.+.|+..+.. +.+.... .....+|+|||+.|+..+.+ +  .+.+.++. |+....++. .+.+..-
T Consensus       346 ~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~p  417 (419)
T PRK04043        346 KNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQSI  417 (419)
T ss_pred             CCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCCC
Confidence               2578888876643 3333322 22357899999988766543 2  34455553 343334433 2334433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.5e-07  Score=80.99  Aligned_cols=282  Identities=16%  Similarity=0.287  Sum_probs=167.3

Q ss_pred             cEEEEEECCCCCEEEEeeCC-----------CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           22 KVHSVAWNCTGTKLASGSVD-----------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D-----------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      .|.-+.|||..++|+|=|..           ..++|||+.++..-+. ...+.+....-.-..|+.++ .++|.-.. .+
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrs-F~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~s  327 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRS-FPVIKSPYLKWPIFRWSHDD-KYFARMTG-NS  327 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcc-eeccCCCccccceEEeccCC-ceeEEecc-ce
Confidence            48899999999999996531           5789999987532111 11111111112235788764 56654444 68


Q ss_pred             EEEEeCCCCceeeeEEecC-ceEEEEEccCCCEEEEEeC--C---CcEEEEEccCCeEeeeecc-CcceeeEEeccCCCe
Q 021319           91 VRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNR--D---DELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEM  163 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~--d---~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~  163 (314)
                      |.|++..+-.......++- .+....|+|.++.||-=.-  +   -.+.+..+.+.+.+.+... ...-..+-|-..|++
T Consensus       328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence            8999876532221111221 2334678888877763221  1   1356666666555544322 222334557777777


Q ss_pred             EEEEcC----------CceEEEEeCCCC-CceeeeeecccceEEEEECCCCCEEEEeeCC---CeEEEeeCCC-cE---E
Q 021319          164 FFLTTG----------NGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISE-ML---C  225 (314)
Q Consensus       164 ~~~~~~----------~g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~-~~---~  225 (314)
                      +.+-..          -.++.++.++.. -|+..+. ....+...+|-|.|..+++-+.+   .++.+|.+.+ ..   .
T Consensus       408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l  486 (698)
T KOG2314|consen  408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL  486 (698)
T ss_pred             EEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence            765321          123445554332 2333332 34568889999999887755443   4789998873 22   2


Q ss_pred             EEEeeecccCeEEEEEccCCcEEEEe---cCCceEEEEECCCCCeEEE-EeccCccceeEEcCCCCeeEEEecCCccccc
Q 021319          226 VRTFTKLEWPVRTISFSHTGDYIASA---SEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA  301 (314)
Q Consensus       226 ~~~~~~~~~~v~~~~~sp~~~~l~s~---s~d~~v~v~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~  301 (314)
                      ++.+..  ...+.+-|+|.|++++.+   |..|.+..+|+........ .+-...-+.+.|-|.|+++.+++.-   |.+
T Consensus       487 Vk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~---wrh  561 (698)
T KOG2314|consen  487 VKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS---WRH  561 (698)
T ss_pred             hhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh---hhh
Confidence            333322  346789999999998876   4568899999874332222 1223457889999999999988853   232


Q ss_pred             -ccceEEecccc
Q 021319          302 -DEGVFRIYGFE  312 (314)
Q Consensus       302 -~~~~~~~~~~~  312 (314)
                       .+.=+|||.|+
T Consensus       562 k~d~GYri~tfq  573 (698)
T KOG2314|consen  562 KVDNGYRIFTFQ  573 (698)
T ss_pred             ccccceEEEEee
Confidence             23448899885

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.10  E-value=1.4e-07  Score=79.67  Aligned_cols=239  Identities=13%  Similarity=0.117  Sum_probs=154.6

Q ss_pred             cceeeeeccceeeecccc--cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee-----cCCCC--EE---E
Q 021319            4 SSIPFKNLHSREYTGHKK--KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-----GHADS--VD---Q   71 (314)
Q Consensus         4 ~~~~~~~~~~~~~~gH~~--~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~-----~h~~~--v~---~   71 (314)
                      .++..-++..+++..|++  .=++=..+.||+.|+=.- -|.|.+||.++..   +..+++.     ....+  +.   -
T Consensus       248 GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~-~GdIylydP~td~---lekldI~lpl~rk~k~~k~~~psky  323 (668)
T COG4946         248 GNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQN-AGDIYLYDPETDS---LEKLDIGLPLDRKKKQPKFVNPSKY  323 (668)
T ss_pred             cceEEeccCCchhhhcCCchhccccccCCCCcEEEEec-CCcEEEeCCCcCc---ceeeecCCccccccccccccCHHHh
Confidence            345556666777777765  233333467888765432 3679999876543   2222221     01111  11   1


Q ss_pred             E-EEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-cEEEEEccCCeEeeeeccC
Q 021319           72 L-CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFG  149 (314)
Q Consensus        72 l-~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~  149 (314)
                      + .|++..+++++..|. |.+-|.+...+-.++. ...+.+.=..+..+++.++.|..|| .+-++|.+..+.....+.-
T Consensus       324 ledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l  401 (668)
T COG4946         324 LEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL  401 (668)
T ss_pred             hhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc
Confidence            1 144455678877776 4555555544433322 1222222244556777889999999 7999999887654444444


Q ss_pred             cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC----eEEEeeCCCcEE
Q 021319          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS----LVSLWDISEMLC  225 (314)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg----~i~vwd~~~~~~  225 (314)
                      ..+..+..+++|+.++++.....+.+++.........-....+-|+.++|+|+++++|-+--+|    .|+++|+..++.
T Consensus       402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            6788999999999999999999999999987765433334455689999999999999887776    599999998876


Q ss_pred             EEEee--ecccCeEEEEEccCCcEEEEe
Q 021319          226 VRTFT--KLEWPVRTISFSHTGDYIASA  251 (314)
Q Consensus       226 ~~~~~--~~~~~v~~~~~sp~~~~l~s~  251 (314)
                      ...-.  .++.   +=+|.|++++|.--
T Consensus       482 y~vTT~ta~Df---sPaFD~d~ryLYfL  506 (668)
T COG4946         482 YDVTTPTAYDF---SPAFDPDGRYLYFL  506 (668)
T ss_pred             EEecCCccccc---CcccCCCCcEEEEE
Confidence            54322  2322   34688899876643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.07  E-value=1e-06  Score=84.12  Aligned_cols=273  Identities=15%  Similarity=0.205  Sum_probs=166.3

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEe-ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC-
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-   97 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~-   97 (314)
                      .+.|.+++|-++...++.+..+|-|-+...+......  ..+. ..-...|.+++|+|++ ++|+....++++.+-+.. 
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDE-ELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccc
Confidence            4679999999999999999999999988332211111  1222 2235679999999985 688888888888765321 


Q ss_pred             ------------CC----------ceeeeE-----------------E--------ecCceEEEEEccCCCEEEEEeC--
Q 021319           98 ------------SG----------KCSQQA-----------------E--------LSGENINITYKPDGTHIAVGNR--  128 (314)
Q Consensus        98 ------------~~----------~~~~~~-----------------~--------~~~~~~~~~~~~~~~~l~~~~~--  128 (314)
                                  -|          +...++                 +        .......++|..||.++|+.+.  
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence                        00          000000                 0        1123456889999999998875  


Q ss_pred             -C---CcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcC---CceEEEEeCCCCCce-eeee--ecccceEEE
Q 021319          129 -D---DELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRPL-DTVV--AHTAGCYCI  197 (314)
Q Consensus       129 -d---~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~-~~~~--~~~~~i~~i  197 (314)
                       .   ..++||+-. +......+ ...--..++|.|.|+.+++...   ...|.+|.-...+.- ..+.  .....+..+
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l  310 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL  310 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence             2   458888843 44333322 2233457899999998887653   234444443332211 1111  234578999


Q ss_pred             EECCCCCEEEEeeCCCeEEEeeCCCcEE-EE-Eeeec-ccCeEEEEEccCCc-EEEEecCCceEE----EEECCCC----
Q 021319          198 AIDPMGRYFAVGSADSLVSLWDISEMLC-VR-TFTKL-EWPVRTISFSHTGD-YIASASEDLFID----ISNVHTG----  265 (314)
Q Consensus       198 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~-~~~~~-~~~v~~~~~sp~~~-~l~s~s~d~~v~----v~~~~~~----  265 (314)
                      .|++++..||..-.|. |.+|-+.+.+- ++ .+.-. ...+..+.|+|... .|...+.++.+.    .|++..+    
T Consensus       311 ~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~  389 (928)
T PF04762_consen  311 AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS  389 (928)
T ss_pred             EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence            9999999999987665 99999988763 22 22211 22345589998653 355454434332    2222211    


Q ss_pred             ------------CeEE----------------EEeccCccceeEEcCCCCeeEEEecCCc
Q 021319          266 ------------RTVH----------------QIPCRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       266 ------------~~~~----------------~~~~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                                  ..+.                .+....+|+.|+|++++..+|.-..|+.
T Consensus       390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~  449 (928)
T PF04762_consen  390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGS  449 (928)
T ss_pred             ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCC
Confidence                        1111                1122457999999999877777777753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.05  E-value=3e-07  Score=80.07  Aligned_cols=257  Identities=14%  Similarity=0.054  Sum_probs=153.1

Q ss_pred             CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCc
Q 021319           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE  110 (314)
Q Consensus        31 ~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~  110 (314)
                      .+..++.++.++.|.-+|..++.  ......+.+.  .......  . +..++.++.|+.+..+|..+|+..-.......
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~--~~W~~~~~~~--~~~~p~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~  136 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGK--RLWRVDLDER--LSGGVGA--D-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE  136 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCc--EeeeecCCCC--cccceEE--c-CCEEEEEcCCCEEEEEECCCCcEeeeeccCce
Confidence            36678888889999999876543  2222233221  1111222  2 34677888899999999999987665554443


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEE----eccCCCeEEEEcCCceEEEEeCCCCCceee
Q 021319          111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA----WNMTGEMFFLTTGNGTVEVLTYPSLRPLDT  186 (314)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  186 (314)
                      ....... .+..++++..++.+..+|.++.+.+...+...+.....    ....+..++++..++.+..++..+.+.+..
T Consensus       137 ~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~  215 (377)
T TIGR03300       137 VLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWE  215 (377)
T ss_pred             eecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeee
Confidence            3221111 34567778889999999999888776654432211100    001234667777888998888876654432


Q ss_pred             eeec-cc---c---eEEEEECC--CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceE
Q 021319          187 VVAH-TA---G---CYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI  257 (314)
Q Consensus       187 ~~~~-~~---~---i~~i~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v  257 (314)
                      .... ..   .   ...+.-+|  .+..+++++.+|.+..||..+++.+-......  .  ......+..++.++.|+.+
T Consensus       216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~--~~p~~~~~~vyv~~~~G~l  291 (377)
T TIGR03300       216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--Y--QGPAVDDNRLYVTDADGVV  291 (377)
T ss_pred             eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--c--cCceEeCCEEEEECCCCeE
Confidence            2110 00   0   00010011  24577778889999999999987665443111  1  1122356788888999999


Q ss_pred             EEEECCCCCeEEEEe-ccCc-cceeEEcCCCCeeEEEecCCccccc
Q 021319          258 DISNVHTGRTVHQIP-CRAA-MNSVEWNPKYNLLAYAGDDKNKYQA  301 (314)
Q Consensus       258 ~v~~~~~~~~~~~~~-~~~~-i~~v~~~~~~~~la~~~~d~~~~~~  301 (314)
                      ..+|..+|+.+.+.. .... ..+...  .+..|..++.++.+|-+
T Consensus       292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~  335 (377)
T TIGR03300       292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL  335 (377)
T ss_pred             EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence            999999999887652 2221 122122  35577777777766653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=3.7e-08  Score=87.09  Aligned_cols=237  Identities=18%  Similarity=0.202  Sum_probs=154.5

Q ss_pred             eeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319            8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (314)
Q Consensus         8 ~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~   87 (314)
                      .+..-.+++.||+..|..+.|+.+.+.|-|...+|.|.||.+-.+  ++...+.-...+..|.+++|+.++ ..+.-.-.
T Consensus        59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg--sW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYe  135 (1189)
T KOG2041|consen   59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG--SWCEEMINNRNKSVVVSMSWNLDG-TKICIVYE  135 (1189)
T ss_pred             cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc--cHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEc
Confidence            334456789999999999999999999999999999999987532  222222112234568899999875 45666777


Q ss_pred             CCcEEEEeCCCCceeeeEEecCceE-EEEEccCCCEEEEEeCCCcEEEEEccCCe-------E-eee--ec--cCcceee
Q 021319           88 DKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFK-------P-IHR--RK--FGYEVNE  154 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~-~~~--~~--~~~~~~~  154 (314)
                      ||.|.+=.+...+ +.-.++++... .+.|++|.+.+..+-..|.+.++|....-       . +..  ..  .+..+..
T Consensus       136 DGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~  214 (1189)
T KOG2041|consen  136 DGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE  214 (1189)
T ss_pred             cCCEEEEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence            7777665554332 22222333332 47799999988888889999999874321       0 100  00  1112333


Q ss_pred             EEe--------ccCCCeEEEEcCCceEEEEeCCC-CCceeeeeecccceEEEEECCCCCEEEEeeCCC---------eEE
Q 021319          155 IAW--------NMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---------LVS  216 (314)
Q Consensus       155 ~~~--------~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg---------~i~  216 (314)
                      +.|        .|+-+.++++..+|.+.+..... ..|+-.  ..+-.+..+.|+++|..||+++.+.         .|+
T Consensus       215 i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~  292 (1189)
T KOG2041|consen  215 IEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH  292 (1189)
T ss_pred             eeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence            333        34667889999999887765432 333321  2224577889999999999997653         455


Q ss_pred             EeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319          217 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  251 (314)
Q Consensus       217 vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  251 (314)
                      +|.. -++.+.+++.....|+.++|-..|-.+|-+
T Consensus       293 Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  293 FYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             Eecc-chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence            5542 356677777777788888886666555433

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.04  E-value=2.5e-07  Score=78.79  Aligned_cols=274  Identities=18%  Similarity=0.212  Sum_probs=172.2

Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC---------
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK---------   89 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~---------   89 (314)
                      -.-++..++|||-|.+|++.... .|.+|+-....  ..  ..+ -|. .|..+.|+|.+ .+|.+=+...         
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~--~l--~~~-~~~-~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~s  102 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA--KL--VRF-RHP-DVKYLDFSPNE-KYLVTWSREPIIEPEIEIS  102 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchh--he--eee-ecC-CceecccCccc-ceeeeeccCCccChhhccC
Confidence            34578999999999999988764 48899765421  11  122 244 47888999975 5777766543         


Q ss_pred             ------cEEEEeCCCCceeeeEEecCce---E-EEEEccCCCEEEEEeCCCcEEEEEcc-CCeE--eeeeccCcceeeEE
Q 021319           90 ------TVRLWDARSGKCSQQAELSGEN---I-NITYKPDGTHIAVGNRDDELTILDVR-KFKP--IHRRKFGYEVNEIA  156 (314)
Q Consensus        90 ------~v~iwd~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~--~~~~~~~~~~~~~~  156 (314)
                            .+.+||+.+|..+..++.-...   . .+.|+-+.++++-- ....+.++++. +..+  ....+ ...+....
T Consensus       103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr-~~gi~dFs  180 (561)
T COG5354         103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLR-PVGILDFS  180 (561)
T ss_pred             CccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhcc-ccceeeEE
Confidence                  4899999999888766543322   2 35677777776643 34578888852 2111  11111 23455666


Q ss_pred             eccCCCe--EEE-----EcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee-----------CCCeEEEe
Q 021319          157 WNMTGEM--FFL-----TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-----------ADSLVSLW  218 (314)
Q Consensus       157 ~~~~~~~--~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~-----------~dg~i~vw  218 (314)
                      |+|.++.  ++.     ....+++++|..+..+.+.+.......-..+.|++.|+++..--           .+..+.++
T Consensus       181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~  260 (561)
T COG5354         181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL  260 (561)
T ss_pred             ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence            7776432  221     23467888888875554443322233335677888887654321           12246667


Q ss_pred             eCCCcEEEEEeeecccCeEEEEEccCCcEEEEec--CCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319          219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS--EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s--~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      ++...-+. .......+|...+|.|.++.+++.+  .+..+.++|+... +...+ ....-+.+.|||..+++..+|=|+
T Consensus       261 ~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-Pe~~rNT~~fsp~~r~il~agF~n  337 (561)
T COG5354         261 RITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF-PEQKRNTIFFSPHERYILFAGFDN  337 (561)
T ss_pred             eecccccc-eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec-CCcccccccccCcccEEEEecCCc
Confidence            76533222 2224567999999999998877555  6788899988764 33333 356678889999999999888665


Q ss_pred             cccccccceEEecc
Q 021319          297 NKYQADEGVFRIYG  310 (314)
Q Consensus       297 ~~~~~~~~~~~~~~  310 (314)
                      -     -|.+-||+
T Consensus       338 l-----~gni~i~~  346 (561)
T COG5354         338 L-----QGNIEIFD  346 (561)
T ss_pred             c-----ccceEEec
Confidence            2     25555554

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=7.6e-10  Score=94.76  Aligned_cols=205  Identities=16%  Similarity=0.215  Sum_probs=141.4

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC-------ceeeeEEec-CceEEEEEccCCCEEEEEeCCCcE
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-------KCSQQAELS-GENINITYKPDGTHIAVGNRDDEL  132 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i  132 (314)
                      .+.||...|.++.-..+ .+-++|++.|++|++|.++..       .|..+...+ ..+-.+.|..+-+++++  -|+.|
T Consensus       730 nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi  806 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI  806 (1034)
T ss_pred             cccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence            46789998888765443 467889999999999987642       244443333 33445777777666654  47899


Q ss_pred             EEEEccCCeEeeeecc------CcceeeEEeccCCCeEEEE-cCCceEEEEeCCCCCceeeeee-----cccceEEEEEC
Q 021319          133 TILDVRKFKPIHRRKF------GYEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLRPLDTVVA-----HTAGCYCIAID  200 (314)
Q Consensus       133 ~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~-----~~~~i~~i~~~  200 (314)
                      .+||+-..+++.....      +..+.++. +.+...++++ +...++++++.+..+-...+..     -+.-+.++++-
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999876655443221      11122221 2223344444 6778999999877655444432     22346899999


Q ss_pred             CCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEE-EECCCCCeEEE
Q 021319          201 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI-SNVHTGRTVHQ  270 (314)
Q Consensus       201 ~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v-~~~~~~~~~~~  270 (314)
                      +.|+.+|.+-++|+|.+.|.++++.+......+.....++ .|..+.|+....|..+.| |....|....+
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q  955 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ  955 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence            9999999999999999999999998887766555555554 488899999999999998 98777655444

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.03  E-value=7.3e-07  Score=85.16  Aligned_cols=234  Identities=16%  Similarity=0.254  Sum_probs=145.5

Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEE----eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 021319           65 HADSVDQLCWDPKHADLIATASGDKTVRLW----DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF  140 (314)
Q Consensus        65 h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  140 (314)
                      ..+.|.++.+-++. +-++.+..+|.|.+.    |.....+.........+.+++|+||+..|+..+.++.+.+.+ +.+
T Consensus        74 ~~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~f  151 (928)
T PF04762_consen   74 PNDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDF  151 (928)
T ss_pred             CCCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccc
Confidence            34678888888775 455677788999988    666665555556778889999999999999999999988875 566


Q ss_pred             eEeeeeccC------cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc---eeeeeecccceEEEEECCCCCEEEEeeC
Q 021319          141 KPIHRRKFG------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFAVGSA  211 (314)
Q Consensus       141 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~t~~~  211 (314)
                      .++......      ...-.|.|-....+|=...+...-+-.. .+..+   ...+. +...-..|+|-.||.++|+.+-
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~-~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~  229 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLR-DPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSV  229 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhcc-CCCCCccccCccc-cCCCceEEEECCCCcEEEEEEE
Confidence            665443221      1223344433332221111110000000 00000   01111 3335578999999999998875


Q ss_pred             ---C---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecC---CceEEEEECCCCCeEEEEec-----cCcc
Q 021319          212 ---D---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE---DLFIDISNVHTGRTVHQIPC-----RAAM  277 (314)
Q Consensus       212 ---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~---d~~v~v~~~~~~~~~~~~~~-----~~~i  277 (314)
                         .   ..+|||+-. +....+-+..+.--.+++|.|.|.++|+.-.   ...|..|+- .|-.-..+..     ...|
T Consensus       230 ~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v  307 (928)
T PF04762_consen  230 EPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKV  307 (928)
T ss_pred             EcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCcee
Confidence               2   479999964 5433333333333456899999999998864   344555553 3332233332     3479


Q ss_pred             ceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          278 NSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       278 ~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ..++||+++..||..-.|+         +++|-..|
T Consensus       308 ~~l~Wn~ds~iLAv~~~~~---------vqLWt~~N  334 (928)
T PF04762_consen  308 IELAWNSDSEILAVWLEDR---------VQLWTRSN  334 (928)
T ss_pred             eEEEECCCCCEEEEEecCC---------ceEEEeeC
Confidence            9999999999999877554         77776543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.02  E-value=2e-07  Score=73.25  Aligned_cols=192  Identities=11%  Similarity=0.054  Sum_probs=128.4

Q ss_pred             CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEE---EEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-
Q 021319           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD---QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-  108 (314)
Q Consensus        33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~---~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-  108 (314)
                      .+|+.||.-|...+|...+... ...  ....|...|.   ..|-.   .--+.-++.|.++++.++.-+......... 
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~-h~~--~cd~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~~s~~~~~h~~~  158 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDG-HLY--QCDVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSGDSNKFAVHNQN  158 (344)
T ss_pred             cEEEeccccceeeeecccCccc-cee--eecccccchhhhhhhccc---ccceeeccCCcceeEEEEecCcccceeeccc
Confidence            4799999999999998875321 111  1222333222   11211   123446789999999987654333322222 


Q ss_pred             CceEEEEEccCCCEEEEEeCCCcEEEEEccCCe-E-eeeecc--CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC-c
Q 021319          109 GENINITYKPDGTHIAVGNRDDELTILDVRKFK-P-IHRRKF--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-P  183 (314)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~  183 (314)
                      -....+++++|++++++.+....+-.|.+.... . +.....  .-.-.+..|+.....++++..+|.+.+||.+... +
T Consensus       159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence            235578899999999999999999988875432 1 221221  2234567899999999999999999999986543 2


Q ss_pred             ee----eeeecccceEEEEECCCCC--EEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319          184 LD----TVVAHTAGCYCIAIDPMGR--YFAVGSADSLVSLWDISEMLCVRTFT  230 (314)
Q Consensus       184 ~~----~~~~~~~~i~~i~~~~~~~--~l~t~~~dg~i~vwd~~~~~~~~~~~  230 (314)
                      +.    +-..|.+++..+.|++.|.  +|...-.-+.+++-|++++...+.+.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            22    2335889999999998764  46666667789999999887665543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.02  E-value=2.1e-09  Score=103.18  Aligned_cols=210  Identities=11%  Similarity=0.154  Sum_probs=154.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEec
Q 021319           81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWN  158 (314)
Q Consensus        81 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~  158 (314)
                      .+.....++...-|..+.+....... -....++.-+|...+.++|+.||.+++|.....+++.....  ...+....|+
T Consensus      2182 ~~~~~n~~~~~~tq~~~~~~~~~k~~-v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASVMIKHP-VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN 2260 (2439)
T ss_pred             cCCcccCCccccceecccceeEeecc-cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc
Confidence            44444455555556554333222221 12345577778888999999999999999888777655433  2456677889


Q ss_pred             cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC---CCeEEEeeCCCc---EEEEEeeec
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEM---LCVRTFTKL  232 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~---dg~i~vwd~~~~---~~~~~~~~~  232 (314)
                      ..|+.+.++..||.+.+|... .++......|........|-.  ..+++++.   ++.+.+||....   .++.  +.|
T Consensus      2261 ~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H 2335 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCH 2335 (2439)
T ss_pred             ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eec
Confidence            999999999999999999876 556667778888888887764  56666643   568999997532   2333  678


Q ss_pred             ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +..++++++-|.-+.|+|||.+|.|.+||+...++++.++.        +. ...+|.+++..        |.+|||.+.
T Consensus      2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~--------g~ikIw~~s 2398 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSE--------GNIKIWRLS 2398 (2439)
T ss_pred             CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcc--------cceEEEEcc
Confidence            88999999999999999999999999999987666665543        54 56788888865        789999875


Q ss_pred             C
Q 021319          313 N  313 (314)
Q Consensus       313 ~  313 (314)
                      +
T Consensus      2399 ~ 2399 (2439)
T KOG1064|consen 2399 E 2399 (2439)
T ss_pred             c
Confidence            3

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.01  E-value=8.1e-10  Score=62.26  Aligned_cols=37  Identities=46%  Similarity=0.832  Sum_probs=34.7

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEee
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH   48 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~   48 (314)
                      ..+.+.+|.+.|++|+|+|++++|+||+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3567899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.00  E-value=6.9e-09  Score=91.77  Aligned_cols=240  Identities=18%  Similarity=0.311  Sum_probs=143.6

Q ss_pred             cEEEEEECCCCC---EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           22 KVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        22 ~V~~v~~s~~g~---~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      .|-.++|+|...   .+++.+..++| +|++.... .......+.||..+|+.+-|+|+...++++++-|..+..||.++
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkai-iwnlA~ss-~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS  146 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKSS-SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS  146 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhh-hhhhhcCC-ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence            577888988753   46666665554 89987543 34456678999999999999999999999999999999999986


Q ss_pred             Cceeee-E-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319           99 GKCSQQ-A-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL  176 (314)
Q Consensus        99 ~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  176 (314)
                      -....- . ........+.|+                                         .....+++......+.+|
T Consensus       147 p~~p~ys~~~w~s~asqVkwn-----------------------------------------yk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  147 PHRPFYSTSSWRSAASQVKWN-----------------------------------------YKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             CCcceeeeecccccCceeeec-----------------------------------------ccCcchhhhccCCceEEE
Confidence            542110 0 011122223333                                         333333333344444555


Q ss_pred             eCC-CCCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccCCcEEEEe--
Q 021319          177 TYP-SLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHTGDYIASA--  251 (314)
Q Consensus       177 ~~~-~~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~--  251 (314)
                      +.. ...++..+.+|...++.++|+.- ...+.+++.||+|+.||..+... -+.....+.++..-+|-|-|+-.+.-  
T Consensus       186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~  265 (1081)
T KOG0309|consen  186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM  265 (1081)
T ss_pred             eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc
Confidence            443 33455556667777788877643 34577889999999999865321 22222345677777777765433221  


Q ss_pred             cCCceEEE---------EECCC-CCeEEEEe-ccCccceeEEcCC----------CCeeEEEecCCcccccccceEEecc
Q 021319          252 SEDLFIDI---------SNVHT-GRTVHQIP-CRAAMNSVEWNPK----------YNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       252 s~d~~v~v---------~~~~~-~~~~~~~~-~~~~i~~v~~~~~----------~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      -.+..+..         |++-+ .++++.+. |...|...-|-..          .-.|+|-+.|-        ++|+|=
T Consensus       266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~--------~lrlWp  337 (1081)
T KOG0309|consen  266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQ--------TLRLWP  337 (1081)
T ss_pred             cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCC--------ceEeee
Confidence            11113333         33322 34555554 3334444444332          23577788774        788886


Q ss_pred             cc
Q 021319          311 FE  312 (314)
Q Consensus       311 ~~  312 (314)
                      +.
T Consensus       338 I~  339 (1081)
T KOG0309|consen  338 ID  339 (1081)
T ss_pred             cc
Confidence            64

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.97  E-value=6e-08  Score=77.66  Aligned_cols=241  Identities=15%  Similarity=0.181  Sum_probs=146.2

Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCC-CCceeeEEeecCCC------------CEEEEEEc-CCCCCEEEE
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-HGKVKDIELRGHAD------------SVDQLCWD-PKHADLIAT   84 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~-~~~~~~~~~~~h~~------------~v~~l~~~-~~~~~~l~s   84 (314)
                      ....|++|.|...|.+++||..-|.|.+|.-+... +...-..++++|..            .|..+.|. +.+.+.++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35679999999999999999999999999643211 11101113444432            35667664 334456777


Q ss_pred             EeCCCcEEEEeCCCCce--ee-------------------------eEEecC-----------------ceEEEEEccCC
Q 021319           85 ASGDKTVRLWDARSGKC--SQ-------------------------QAELSG-----------------ENINITYKPDG  120 (314)
Q Consensus        85 ~~~D~~v~iwd~~~~~~--~~-------------------------~~~~~~-----------------~~~~~~~~~~~  120 (314)
                      ...|++|++|-+.....  +.                         +...+.                 .+.++.++.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            88999999998754310  00                         000000                 11234555555


Q ss_pred             CEEEEEeCCCcEEEEEccCCeEeee---ecc------CcceeeEEeccCC-CeEEEEcCCceEEEEeCCCCC------ce
Q 021319          121 THIAVGNRDDELTILDVRKFKPIHR---RKF------GYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLR------PL  184 (314)
Q Consensus       121 ~~l~~~~~d~~i~i~d~~~~~~~~~---~~~------~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~------~~  184 (314)
                      ..++ ...|-.|.+|++.....-..   ++.      ..-+.+..|+|.- +.+.-++..|.+++.++++..      .+
T Consensus       185 et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            4444 44677899998875433221   221      1224566777764 455667788999999886321      11


Q ss_pred             ee----------eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC-cEEEEEeeecc------------cC---eEE
Q 021319          185 DT----------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTKLE------------WP---VRT  238 (314)
Q Consensus       185 ~~----------~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~------------~~---v~~  238 (314)
                      ..          +......|..+.|+++|+++++-+- -+|++||++- ..++++..-|.            .+   -..
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence            11          1122345788899999999986643 5799999863 34556553221            12   234


Q ss_pred             EEEccCCcEEEEecCCceEEEEE
Q 021319          239 ISFSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~d~~v~v~~  261 (314)
                      +.||-|.+.+.+||.....-++-
T Consensus       343 isfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         343 ISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             EEecCCcccccccccccceeeec
Confidence            78898888888888765555544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.96  E-value=1.7e-06  Score=70.14  Aligned_cols=220  Identities=19%  Similarity=0.135  Sum_probs=135.5

Q ss_pred             CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCC
Q 021319           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG  120 (314)
Q Consensus        41 D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  120 (314)
                      +|+|..||..++.  .+....+..-.....+.... . +..++.++.++.+..||..+|+............... ...+
T Consensus         2 ~g~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~   76 (238)
T PF13360_consen    2 DGTLSALDPRTGK--ELWSYDLGPGIGGPVATAVP-D-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDG   76 (238)
T ss_dssp             TSEEEEEETTTTE--EEEEEECSSSCSSEEETEEE-E-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEET
T ss_pred             CCEEEEEECCCCC--EEEEEECCCCCCCccceEEE-e-CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecc
Confidence            5778888875432  23333331111222211221 2 3467777899999999999998877666533322111 2345


Q ss_pred             CEEEEEeCCCcEEEEEccCCeEeeee-ccCcc----eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccc--
Q 021319          121 THIAVGNRDDELTILDVRKFKPIHRR-KFGYE----VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG--  193 (314)
Q Consensus       121 ~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--  193 (314)
                      ..++++..++.+..+|.++.+.+... ....+    .........++.++++..++.+..++..+.+.+.........  
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence            66777778889999999999888773 32211    112223334788888888999999998888776655443211  


Q ss_pred             --------eEEEEECCCCCEEEEeeCCCe-EEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          194 --------CYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       194 --------i~~i~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                              +..-.+..++ .+..++.++. +.+ |..+++.+-...  ...+.. ...+.+..|+.++.++.+..+|..+
T Consensus       157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred             cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence                    1222233345 6666666764 666 999998653222  222222 1457788888888999999999999


Q ss_pred             CCeEEE
Q 021319          265 GRTVHQ  270 (314)
Q Consensus       265 ~~~~~~  270 (314)
                      |+.+.+
T Consensus       232 G~~~W~  237 (238)
T PF13360_consen  232 GKVVWQ  237 (238)
T ss_dssp             TEEEEE
T ss_pred             CCEEeE
Confidence            998764

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.95  E-value=5.5e-06  Score=67.84  Aligned_cols=222  Identities=20%  Similarity=0.261  Sum_probs=144.6

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcE-EEEeCCCCceeeeEEec-CceE--EEEEccCCCEEEEEeC-----CCcEEEEEcc-C
Q 021319           70 DQLCWDPKHADLIATASGDKTV-RLWDARSGKCSQQAELS-GENI--NITYKPDGTHIAVGNR-----DDELTILDVR-K  139 (314)
Q Consensus        70 ~~l~~~~~~~~~l~s~~~D~~v-~iwd~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~~~~-----d~~i~i~d~~-~  139 (314)
                      ..++.+|.....++.+-.-|+. .+||.++++......-. +..+  .-.|++||++|++...     .|.|-|||.. .
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            3466788767777778777665 68999999876655332 2222  3679999999998754     4569999998 5


Q ss_pred             CeEeeeec-cCcceeeEEeccCCCeEEEEcCC-------c-----------eEEEEeCCCCCceee--e--eecccceEE
Q 021319          140 FKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN-------G-----------TVEVLTYPSLRPLDT--V--VAHTAGCYC  196 (314)
Q Consensus       140 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------g-----------~~~~~~~~~~~~~~~--~--~~~~~~i~~  196 (314)
                      .+.+..+. .+-....+.+.|+++.++++.+.       |           ++.+.+..+.+.+.+  +  .-|..++..
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            55554433 23445677889999888877541       2           233333344444433  2  236667899


Q ss_pred             EEECCCCCEEEEeeCCC-------eEEEeeCCCcEEEEEee-------ecccCeEEEEEccCCcEEEEec-CCceEEEEE
Q 021319          197 IAIDPMGRYFAVGSADS-------LVSLWDISEMLCVRTFT-------KLEWPVRTISFSHTGDYIASAS-EDLFIDISN  261 (314)
Q Consensus       197 i~~~~~~~~l~t~~~dg-------~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~s~s-~d~~v~v~~  261 (314)
                      ++++++|..++..--.|       .+-+++....  +..+.       ....-+-+|++++++.+++..| .-+.+.+||
T Consensus       168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d  245 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD  245 (305)
T ss_pred             EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence            99999998766543333       2444443322  22221       2334588999999998887666 567899999


Q ss_pred             CCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319          262 VHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      ..+++.+..... .-+..|+-.+++ ++++.|.-
T Consensus       246 ~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  246 AATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             CCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence            999998876543 246667777666 66666643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.93  E-value=6.7e-07  Score=70.34  Aligned_cols=213  Identities=11%  Similarity=0.078  Sum_probs=137.2

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeee-EEecCceEEEE--EccCCCEEEEEeCCCcEEEEEccCC--eE-eeeeccCcce
Q 021319           79 ADLIATASGDKTVRLWDARSGKCSQQ-AELSGENINIT--YKPDGTHIAVGNRDDELTILDVRKF--KP-IHRRKFGYEV  152 (314)
Q Consensus        79 ~~~l~s~~~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~--~~-~~~~~~~~~~  152 (314)
                      ...|+.|+.-|...+|...+.+.... .......+.+.  +.-...-+..++.|.+++++++.-.  +. ++...  ...
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--~~~  161 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--LTQ  161 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc--cce
Confidence            45788999999999999886553322 22222211110  1111223556677778777776432  21 12111  237


Q ss_pred             eeEEeccCCCeEEEEcCCceEEEEeCCCC-Cc-ee-eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE---
Q 021319          153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSL-RP-LD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV---  226 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~---  226 (314)
                      .++.+++++...++.+....+..|.++.. +. +. .....+..-.+.+|+.....+|++..||++.|||++.....   
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~  241 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE  241 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence            78899999999999999999988877542 22 22 12233445678899999999999999999999999865432   


Q ss_pred             --EEeeecccCeEEEEEccCC--cEEEEecCCceEEEEECCCCCeEEEEec---------cCccceeEEcCCCCeeEEEe
Q 021319          227 --RTFTKLEWPVRTISFSHTG--DYIASASEDLFIDISNVHTGRTVHQIPC---------RAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       227 --~~~~~~~~~v~~~~~sp~~--~~l~s~s~d~~v~v~~~~~~~~~~~~~~---------~~~i~~v~~~~~~~~la~~~  293 (314)
                        .+-..|..+++.+.|+|.|  .+|+-.=.-+.++|-|+++++..+.+..         ...|..-.|+.++.-.-+.+
T Consensus       242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence              1223477889999999976  3566555668899999999876654321         12355556665554443333

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.92  E-value=1.5e-05  Score=65.03  Aligned_cols=214  Identities=14%  Similarity=0.138  Sum_probs=133.7

Q ss_pred             EEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceee
Q 021319           25 SVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (314)
Q Consensus        25 ~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~  103 (314)
                      ++.|.+ ++.++.+--..+.|..|+.+..   ......+.   . ...+++...++ .++.+..+ .+.++|..+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~~~---~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVIDLP---G-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEESS---S-EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEecC---C-CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEE
Confidence            577888 6667777667888988887642   22222222   2 66677763334 44445554 45556998887655


Q ss_pred             eEEec------CceEEEEEccCCCEEEEEeCC--------CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE-EEc
Q 021319          104 QAELS------GENINITYKPDGTHIAVGNRD--------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF-LTT  168 (314)
Q Consensus       104 ~~~~~------~~~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  168 (314)
                      .....      .....+++.|+|++.++....        +.+..++.. .+.......-...+.++|+++++.++ +-+
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccc
Confidence            54431      122358899999977765543        446666666 33222222234468899999998665 556


Q ss_pred             CCceEEEEeCCCCCc-e---eeee---ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEE
Q 021319          169 GNGTVEVLTYPSLRP-L---DTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF  241 (314)
Q Consensus       169 ~~g~~~~~~~~~~~~-~---~~~~---~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  241 (314)
                      ..+.+..+++..... +   ..+.   ...+.+-.++++.+|++.++.-..+.|.++|.. ++.+..+......+.+++|
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            788888888753221 1   1121   111237789999999988888888999999987 7777776655457899999


Q ss_pred             c-cCCcEEE
Q 021319          242 S-HTGDYIA  249 (314)
Q Consensus       242 s-p~~~~l~  249 (314)
                      . |+.+.|+
T Consensus       233 gg~~~~~L~  241 (246)
T PF08450_consen  233 GGPDGKTLY  241 (246)
T ss_dssp             ESTTSSEEE
T ss_pred             ECCCCCEEE
Confidence            4 6655444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.92  E-value=2.1e-06  Score=72.84  Aligned_cols=172  Identities=14%  Similarity=0.070  Sum_probs=121.0

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCc-eEEEEeCCCCCceeeeeecccceEEE
Q 021319          119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG-TVEVLTYPSLRPLDTVVAHTAGCYCI  197 (314)
Q Consensus       119 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~i~~i  197 (314)
                      +|.+++..++ |...+++....-.++ ......+.-..+..+++-++.+..+| .+-+++....+. ..+...-+.|.++
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av  407 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAV  407 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEE
Confidence            6778877765 444555543332222 22223466666666777888888888 889999877652 3344556789999


Q ss_pred             EECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCc----eEEEEECCCCCeEEEEec
Q 021319          198 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL----FIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       198 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~----~v~v~~~~~~~~~~~~~~  273 (314)
                      ..+|+|+.++.+.....+-+.|++++.....-+-...-|....|||+++++|.+=.+|    .|+++|+..++....-..
T Consensus       408 ~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~  487 (668)
T COG4946         408 KVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP  487 (668)
T ss_pred             EEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC
Confidence            9999999999999889999999998864332222334588999999999999998775    579999988887655433


Q ss_pred             cCccceeEEcCCCCeeEEEe
Q 021319          274 RAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       274 ~~~i~~v~~~~~~~~la~~~  293 (314)
                      .+-=.+=||-|++++|-+=+
T Consensus       488 ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         488 TAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cccccCcccCCCCcEEEEEe
Confidence            33345667778888775544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=6.7e-07  Score=80.01  Aligned_cols=204  Identities=18%  Similarity=0.176  Sum_probs=135.8

Q ss_pred             ceeeecccccEEEEEECCCC------------CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC--
Q 021319           13 SREYTGHKKKVHSVAWNCTG------------TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH--   78 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g------------~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--   78 (314)
                      ++.+.-|+..|+.|.|+|..            -.||+++-.|.|.+||....    .....+..|.+++.+++|-+..  
T Consensus        48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~----s~~~~l~~~~~~~qdl~W~~~rd~  123 (1062)
T KOG1912|consen   48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA----SVINWLSHSNDSVQDLCWVPARDD  123 (1062)
T ss_pred             hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh----hhhhhhcCCCcchhheeeeeccCc
Confidence            45566799999999998731            25788888999999998653    2334677889999999997643  


Q ss_pred             -CCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEE-EEEcc-CCCEEEEEeCCCcEEEEEcc-CCeE---e--eeeccC
Q 021319           79 -ADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKP-DGTHIAVGNRDDELTILDVR-KFKP---I--HRRKFG  149 (314)
Q Consensus        79 -~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~---~--~~~~~~  149 (314)
                       .++++.-..-.++-+|+..+|...-......++.. +.+.| |.+.+.+-+..|.+.+.+.- ...+   .  ..++.+
T Consensus       124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd  203 (1062)
T KOG1912|consen  124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD  203 (1062)
T ss_pred             chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence             25677777778999999999987655554445544 66666 44555555555555544431 1110   0  011110


Q ss_pred             c-------------------------c--eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCC
Q 021319          150 Y-------------------------E--VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM  202 (314)
Q Consensus       150 ~-------------------------~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  202 (314)
                      .                         .  .-..+|+|.-+..++..-...+.+++++-..++.......+.+.-+.+-|+
T Consensus       204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~  283 (1062)
T KOG1912|consen  204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD  283 (1062)
T ss_pred             ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccC
Confidence            0                         0  112456777777777777888889988777777666655666666677666


Q ss_pred             CC--EEEEeeCCCeEEEeeC
Q 021319          203 GR--YFAVGSADSLVSLWDI  220 (314)
Q Consensus       203 ~~--~l~t~~~dg~i~vwd~  220 (314)
                      ++  .|++.-.||.+.+|-.
T Consensus       284 ~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  284 PRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             CCcceEEEEecCCeEEEEEe
Confidence            54  5788888998888854

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.90  E-value=3.8e-06  Score=68.18  Aligned_cols=205  Identities=18%  Similarity=0.165  Sum_probs=129.6

Q ss_pred             CCcEEEEeCCCCceeeeEEecCce--EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319           88 DKTVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      +++|..+|.++|+..-........  ......+++..+++++.++.+..+|..+.+.+.+.....++.... ...+..++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~   80 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVY   80 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccc
Confidence            688999999999887776653211  111133467778888899999999999999887766544332222 33455666


Q ss_pred             EEcCCceEEEEeCCCCCceeee-eeccc---ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC----e-
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTV-VAHTA---GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP----V-  236 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~---~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~----v-  236 (314)
                      +...++.+..++..+.+.+... .....   .........++..++.+..++.|..+|+++++.+..+.....+    + 
T Consensus        81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~  160 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS  160 (238)
T ss_dssp             EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred             cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence            6767889999998888776653 22211   1112222223778888888999999999999988776543311    1 


Q ss_pred             ------EEEEEccCCcEEEEecCCce-EEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcc
Q 021319          237 ------RTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK  298 (314)
Q Consensus       237 ------~~~~~sp~~~~l~s~s~d~~-v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~  298 (314)
                            ..+.+ .++ .+..++.++. +.+ |..+++.+...+ -.....+ ..+++..|+.++.++.+
T Consensus       161 ~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l  224 (238)
T PF13360_consen  161 SFSDINGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRL  224 (238)
T ss_dssp             EETTEEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEE
T ss_pred             eecccccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEE
Confidence                  22222 344 6666777775 555 999999775443 2233332 34566777777766433

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=7.1e-08  Score=80.83  Aligned_cols=249  Identities=19%  Similarity=0.180  Sum_probs=164.6

Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE-E---ecCceEEEEEccCCCEEEEEeC-CCcEEEEEcc
Q 021319           64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-E---LSGENINITYKPDGTHIAVGNR-DDELTILDVR  138 (314)
Q Consensus        64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~-~---~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~  138 (314)
                      .|.+.|+-+.-  ...+++.+++-||.++.|-...-.-+... .   +.+.+..++.+-++.++.+... |..++++|+.
T Consensus         7 mhrd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEee--ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            36666665543  33579999999999999964321111111 1   1123345667778888888777 9999999999


Q ss_pred             CCeEeeeeccCcceeeEEeccC-C----CeEEEEcCCceEEEEeCCCC--CceeeeeecccceEEEEECCCCCEEEEeeC
Q 021319          139 KFKPIHRRKFGYEVNEIAWNMT-G----EMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSA  211 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~  211 (314)
                      +...+.-++.......+.|... |    ...+....++.+.+++-...  +....-..|..+|.++.++|.+..+++...
T Consensus        85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            8876655555544444444322 2    22333456788888886432  222333468899999999999999999999


Q ss_pred             CCeEEEeeCCC-cEEEE--------------EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec---
Q 021319          212 DSLVSLWDISE-MLCVR--------------TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC---  273 (314)
Q Consensus       212 dg~i~vwd~~~-~~~~~--------------~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~---  273 (314)
                      .|.|..|.... .+...              .+...+....++.|+|++..+++-+.|..|+++...+|++++.+.-   
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t  244 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT  244 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence            99999999863 11111              1122334578899999999999999999999999999987654420   


Q ss_pred             ------c-------------------------CccceeEEcCCCCeeEEEecCCcccc-cc-cceEEeccccCC
Q 021319          274 ------R-------------------------AAMNSVEWNPKYNLLAYAGDDKNKYQ-AD-EGVFRIYGFENA  314 (314)
Q Consensus       274 ------~-------------------------~~i~~v~~~~~~~~la~~~~d~~~~~-~~-~~~~~~~~~~~~  314 (314)
                            +                         ..-..+.|--++++|.++.--+-... .+ .-++||+|=+||
T Consensus       245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e~  318 (558)
T KOG0882|consen  245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKDEA  318 (558)
T ss_pred             hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccchh
Confidence                  0                         11246778888999998874321111 22 234677776553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.86  E-value=1.3e-08  Score=57.20  Aligned_cols=39  Identities=33%  Similarity=0.516  Sum_probs=36.6

Q ss_pred             cEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319          223 MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       223 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~  261 (314)
                      ++++.++.+|..+|.+++|+|++.+|+|++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=2.2e-08  Score=81.08  Aligned_cols=159  Identities=13%  Similarity=0.164  Sum_probs=116.5

Q ss_pred             EEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC-----CceeeeeecccceEEEE
Q 021319          124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-----RPLDTVVAHTAGCYCIA  198 (314)
Q Consensus       124 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~i~~i~  198 (314)
                      ++.+.+..+-+-|+.+... ........+..+.|...++.++.++.+|.|..+|++..     .+. ...-|...++++.
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EEEEcCcchhhhh
Confidence            3444555667777766432 12234456777788888999999999999999998654     222 2234888899987


Q ss_pred             ECC-CCCEEEEeeCCCeEEEeeCCCcEE---EEEeeecccC--eEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319          199 IDP-MGRYFAVGSADSLVSLWDISEMLC---VRTFTKLEWP--VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       199 ~~~-~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~~~~~~--v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      .-. ++++|.+.+-+|+|++||++-.+|   +.++++|-..  -.-+-..|....+++++.|...++|.++.|.++.+++
T Consensus       306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            766 788899999999999999998777   7788777432  2223456788899999999999999999999998876


Q ss_pred             ccC-----ccceeEEcC
Q 021319          273 CRA-----AMNSVEWNP  284 (314)
Q Consensus       273 ~~~-----~i~~v~~~~  284 (314)
                      ...     -+-+|+|..
T Consensus       386 f~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  386 FPYSASEVDIPSVAFDS  402 (425)
T ss_pred             CCCccccccccceehhc
Confidence            533     245666654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.80  E-value=1.8e-07  Score=77.24  Aligned_cols=156  Identities=15%  Similarity=0.219  Sum_probs=108.7

Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEeCCCCc----eeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEc---cCCeEee
Q 021319           72 LCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV---RKFKPIH  144 (314)
Q Consensus        72 l~~~~~~~~~l~s~~~D~~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~  144 (314)
                      ...++ .+.+++.+..++...+++.+...    ............++.+..+...+.++..-|.+.-+|.   ....+..
T Consensus        68 ~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~  146 (390)
T KOG3914|consen   68 VLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP  146 (390)
T ss_pred             cccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence            34444 35788888877777676654332    2222333444556666667666666665555554443   3333333


Q ss_pred             eeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee-eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc
Q 021319          145 RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (314)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~  223 (314)
                      ..-+-.-+..++++|++..++++..|+.|++-.++.--.+..+ .||..-|..+++-++ +.|++++.|+++++||..++
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence            3334445788999999999999999999999988765555554 479999999998764 45899999999999999999


Q ss_pred             EEEEEe
Q 021319          224 LCVRTF  229 (314)
Q Consensus       224 ~~~~~~  229 (314)
                      +++.++
T Consensus       226 k~L~t~  231 (390)
T KOG3914|consen  226 KLLDTC  231 (390)
T ss_pred             Cccccc
Confidence            887665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.79  E-value=2.5e-06  Score=67.97  Aligned_cols=201  Identities=16%  Similarity=0.213  Sum_probs=107.4

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceee-EEee-cCCCCEEEEEEcCCC-----CCEEEEEeCCCcEEEE
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELR-GHADSVDQLCWDPKH-----ADLIATASGDKTVRLW   94 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~-~~~~-~h~~~v~~l~~~~~~-----~~~l~s~~~D~~v~iw   94 (314)
                      .=+.++||||+..||.+...|+|+++|+.....-.+.. .... .-..+|-.+.|.+..     ...|+.-.-+|.++-+
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            45678999999999999999999999986311100000 0011 123456666664322     2234455566777766


Q ss_pred             eCCCC-----ceeeeEEe----cCceEEEEEccCCCEEEEEeCCCc-----------EEEEEccCCeEeeeeccCcceee
Q 021319           95 DARSG-----KCSQQAEL----SGENINITYKPDGTHIAVGNRDDE-----------LTILDVRKFKPIHRRKFGYEVNE  154 (314)
Q Consensus        95 d~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~-----------i~i~d~~~~~~~~~~~~~~~~~~  154 (314)
                      -+..+     +....+.+    ...+.++.++|..++|++|+....           +..|.+-+..|-         ..
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py---------yk  195 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY---------YK  195 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCc---------EE
Confidence            54221     11222222    234557889999999988875322           222222111110         00


Q ss_pred             EEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc
Q 021319          155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW  234 (314)
Q Consensus       155 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~  234 (314)
                      .........-......   .++.+...+...........|..|.+||||+.||+...+|.|.+|++......+..+..+.
T Consensus       196 ~v~~~~~~~~~~~~~~---~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq  272 (282)
T PF15492_consen  196 QVTSSEDDITASSKRR---GLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ  272 (282)
T ss_pred             EccccCcccccccccc---ceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence            0000000000000011   1111111111101112345789999999999999999999999999988777666544443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=1.1e-08  Score=92.34  Aligned_cols=259  Identities=16%  Similarity=0.265  Sum_probs=166.9

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC-cEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-TVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~-~v~   92 (314)
                      +.+..|...-+|++|+.+.+.|+.|+..|.|+++++.++.    ......+|..+|+-+.-+-++...|.+++... -..
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc----ccccccccccccccccccCCcceeeeeccccCchHH
Confidence            4567788899999999999999999999999999998643    22246789999998877666655555555444 456


Q ss_pred             EEeCCC-CceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-----CcceeeEEeccCCCeEEE
Q 021319           93 LWDARS-GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-----GYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        93 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  166 (314)
                      +|+... +.....   -.+..++.|+.....-++|+......+||+.+..++.++..     .+.-+...|+|+...++ 
T Consensus      1171 LW~~~s~~~~~Hs---f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHS---FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             HhccccccCcccc---ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            898753 111111   12233455665555556777778899999998776655432     24457778899888765 


Q ss_pred             EcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCc
Q 021319          167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD  246 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  246 (314)
                        .+|  .+|+.+..+.+..+....- --.-.|+|.|..++..+     .|||+++.+.++.....+  -..+.|+..|.
T Consensus      1247 --ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGD 1314 (1516)
T ss_pred             --eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCcc
Confidence              344  3577655444443322110 01225899999888664     589999988777654433  46688999998


Q ss_pred             EEEEec--CC---------------ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEE
Q 021319          247 YIASAS--ED---------------LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       247 ~l~s~s--~d---------------~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~  292 (314)
                      .+...-  +|               ...+-++....+.+.+++.+-.+..++-.|...+|+..
T Consensus      1315 VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1315 VMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred             chhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence            765432  11               11233333334445555555566677777776666554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.71  E-value=2.3e-05  Score=68.76  Aligned_cols=252  Identities=13%  Similarity=0.114  Sum_probs=144.7

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEE-EEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCc
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ-LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE  110 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~  110 (314)
                      +..++.++.++.+..+|.+++..-+  ...+.+   .+.+ ....   +..++.+..++.+.-+|..+|+..-.......
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W--~~~~~~---~~~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~  191 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAW--QTKVAG---EALSRPVVS---DGLVLVHTSNGMLQALNESDGAVKWTVNLDVP  191 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcc--cccCCC---ceecCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence            3456667788999999887654322  222222   1111 1111   23566778899999999999987655543322


Q ss_pred             eEEEE--Ecc--CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc--------eeeEEecc--CCCeEEEEcCCceEEEE
Q 021319          111 NINIT--YKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--------VNEIAWNM--TGEMFFLTTGNGTVEVL  176 (314)
Q Consensus       111 ~~~~~--~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~~~~~~g~~~~~  176 (314)
                      ...+.  .+|  .+..++++..++.+..+|..+.+.+.......+        ...+..+|  .+..++++..+|.+..+
T Consensus       192 ~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al  271 (394)
T PRK11138        192 SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL  271 (394)
T ss_pred             cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence            11100  011  234577778888999999888776554332111        00011111  24556667778899988


Q ss_pred             eCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc-CeEEEEEccCCcEEEEecCCc
Q 021319          177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASEDL  255 (314)
Q Consensus       177 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~s~d~  255 (314)
                      +..+.+.+-....  .....+..  .+..++.++.+|.+..+|..+++.+-....... ...+...  .+.+|+.++.||
T Consensus       272 d~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G  345 (394)
T PRK11138        272 DLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEG  345 (394)
T ss_pred             ECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCC
Confidence            8877665433221  11111222  355677778899999999998876543221111 1111111  256778899999


Q ss_pred             eEEEEECCCCCeEEEEecc-Cccce-eEEcCCCCeeEEEecCCccc
Q 021319          256 FIDISNVHTGRTVHQIPCR-AAMNS-VEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       256 ~v~v~~~~~~~~~~~~~~~-~~i~~-v~~~~~~~~la~~~~d~~~~  299 (314)
                      .+++.|..+|+.+.+.... ..+.+ -..  .+..|..++.|+.+|
T Consensus       346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~  389 (394)
T PRK11138        346 YLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVY  389 (394)
T ss_pred             EEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEE
Confidence            9999999999988776532 22221 111  234566678776555

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.70  E-value=8.1e-05  Score=59.54  Aligned_cols=233  Identities=16%  Similarity=0.154  Sum_probs=124.2

Q ss_pred             EEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCC---EEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS---VDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        26 v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      ++.+.+|+.||.- .|..|.|=.....-...+.....  .+++   =..++|+|++ .+||.+...|+|+++|+....+-
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqV--pkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf   78 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQV--PKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF   78 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEec--CCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccceeE
Confidence            4556778766655 46777775443322222222222  2222   3579999984 69999999999999998754322


Q ss_pred             eeEE-------ecCceEEEEEccC------CCEEEEEeCCCcEEEEEc-----cCCeEeeeec----cCcceeeEEeccC
Q 021319          103 QQAE-------LSGENINITYKPD------GTHIAVGNRDDELTILDV-----RKFKPIHRRK----FGYEVNEIAWNMT  160 (314)
Q Consensus       103 ~~~~-------~~~~~~~~~~~~~------~~~l~~~~~d~~i~i~d~-----~~~~~~~~~~----~~~~~~~~~~~~~  160 (314)
                      ....       ....+..+.|.+-      ...|++-..+|.++-+-+     ...+..+...    .+..+..+.++|.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            1111       1112222334321      124445555666555543     2233333332    2356889999999


Q ss_pred             CCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCE--EEEeeCCCe------EEEeeCCCcEEEEEeeec
Q 021319          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY--FAVGSADSL------VSLWDISEMLCVRTFTKL  232 (314)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--l~t~~~dg~------i~vwd~~~~~~~~~~~~~  232 (314)
                      .+.+++++....-      ...    -..-..++++-.+-.+..+  .++...|+.      -.+|.+-+....-.....
T Consensus       159 h~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~  228 (282)
T PF15492_consen  159 HRLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE  228 (282)
T ss_pred             CCEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC
Confidence            9888887653220      000    0011122222222111111  112222221      123333222111111123


Q ss_pred             ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319          233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      ...|..++.||||..||+...+|.+.+|++..-+..+..+
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            4568999999999999999999999999998877776654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=0.00023  Score=61.94  Aligned_cols=217  Identities=18%  Similarity=0.222  Sum_probs=155.1

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC---CCcEEEEEccCCeEeeee
Q 021319           70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHRR  146 (314)
Q Consensus        70 ~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~  146 (314)
                      ..++.++.+....+....+..|.+.|..+.++............++++++++.+.++..   ++.+.+.|..+.+.....
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            45667777666777777789999999888887777766667778999999988887765   688999999888887776


Q ss_pred             ccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCCCCcee-e---eeecccceEEEEECCCCCEEEEeeCC---CeEEEe
Q 021319          147 KFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLD-T---VVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLW  218 (314)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~-~---~~~~~~~i~~i~~~~~~~~l~t~~~d---g~i~vw  218 (314)
                      ..+.....+++.|+++.+++.. .++.+.+++........ .   ...-......++++|+|..+.+....   +.+...
T Consensus       157 ~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i  236 (381)
T COG3391         157 PVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI  236 (381)
T ss_pred             ecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence            5554448899999999665554 78899998865433221 1   11223345788999999966555443   589999


Q ss_pred             eCCCcEEEEEeeeccc-CeEEEEEccCCcEEEEecC-CceEEEEECCCCCeEEEEecc----CccceeEEcCCC
Q 021319          219 DISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASE-DLFIDISNVHTGRTVHQIPCR----AAMNSVEWNPKY  286 (314)
Q Consensus       219 d~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~s~-d~~v~v~~~~~~~~~~~~~~~----~~i~~v~~~~~~  286 (314)
                      |..++........... ....+..+|+|.++..... .+.+.+.|..+......+...    ..+..+++.+..
T Consensus       237 d~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         237 DTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             eCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence            9988766554111111 3456889999999998854 488999999988777665432    236666666643

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.64  E-value=1.6e-07  Score=73.41  Aligned_cols=193  Identities=16%  Similarity=0.198  Sum_probs=110.9

Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC------------c-eEEEEEccCCCEEEEEeCCCcEEEE
Q 021319           69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG------------E-NINITYKPDGTHIAVGNRDDELTIL  135 (314)
Q Consensus        69 v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~l~~~~~d~~i~i~  135 (314)
                      +..+.+..  ...|+++..++.+.......+.+....+-..            + .-+-..+.-++-++++..|+.+.++
T Consensus        39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~  116 (319)
T KOG4714|consen   39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF  116 (319)
T ss_pred             EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence            34444433  2456666666666665554444432221111            1 1111123346778999999999999


Q ss_pred             EccCCeEeeeeccCc--ceeeEEeccCCCeEEEEcCCceE------EEEeCCCCCceeeeeecccceEEEEECCCCC-EE
Q 021319          136 DVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTV------EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YF  206 (314)
Q Consensus       136 d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l  206 (314)
                      +.+....+.+.....  ...+..+...++ ++.+.+-|.+      ++|++++.+.+..-......+++++-+|.-+ .+
T Consensus       117 s~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v  195 (319)
T KOG4714|consen  117 STDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV  195 (319)
T ss_pred             echHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEE
Confidence            987632221111000  000111111222 2333333433      4444433222111111223488899998654 56


Q ss_pred             EEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccC-CcEEEEecCCceEEEEECCC
Q 021319          207 AVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHT-GDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       207 ~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~-~~~l~s~s~d~~v~v~~~~~  264 (314)
                      ++|+.||.+-+||++.... ...++.|+.++..+.|+|. +..|+++|+||.+.-||..+
T Consensus       196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            7888899999999987643 3456789999999999986 67899999999999999874

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=1.1e-07  Score=77.17  Aligned_cols=134  Identities=16%  Similarity=0.119  Sum_probs=103.7

Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      -++.|.+++|...++++..|...|.|-..|+.++.++.......--|..+|+++..-....+.|++.+.+|.|++||.+.
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            35689999999989999999999999999998775554444444568999998876553456888999999999999987


Q ss_pred             Cce---eeeEEecCce---EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcce
Q 021319           99 GKC---SQQAELSGEN---INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV  152 (314)
Q Consensus        99 ~~~---~~~~~~~~~~---~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  152 (314)
                      -++   +.+.+.+.+.   +-+.+.+....+++++.|=..++|.++..+.+..+..+...
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~  390 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSA  390 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCcc
Confidence            666   5555443322   33556777788888999999999999999888877765443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=7.6e-06  Score=68.07  Aligned_cols=240  Identities=15%  Similarity=0.146  Sum_probs=131.4

Q ss_pred             eeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ..+.+|...|.+++|||..+ ++..++-+..|+|.|+++..    ....+..| .++.+.+|..++.++|..|...|.|.
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~----~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC----VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccce----eeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence            35678889999999999988 68889999999999998643    22223344 77999999999889999999999999


Q ss_pred             EEeCCCCceee---eEEec-CceEEEE------EccCCCEEEEEeCCCcEEEEEccC--CeEeeeeccC--cceeeEEec
Q 021319           93 LWDARSGKCSQ---QAELS-GENINIT------YKPDGTHIAVGNRDDELTILDVRK--FKPIHRRKFG--YEVNEIAWN  158 (314)
Q Consensus        93 iwd~~~~~~~~---~~~~~-~~~~~~~------~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~--~~~~~~~~~  158 (314)
                      ++|.+.-+-..   ..+.. .....++      ..+.+.+++....  .+..|....  ..+....+.+  ....+..++
T Consensus       262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~  339 (463)
T KOG1645|consen  262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYH  339 (463)
T ss_pred             EEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeec
Confidence            99998653211   11111 1122222      2233444444433  233443321  1112212221  122222333


Q ss_pred             cCCCeEEEEcCCc-------eEEE-EeCCCCCceeee-eecccc-------eEEEEECCCCCEEE-EeeCCCeEEEeeCC
Q 021319          159 MTGEMFFLTTGNG-------TVEV-LTYPSLRPLDTV-VAHTAG-------CYCIAIDPMGRYFA-VGSADSLVSLWDIS  221 (314)
Q Consensus       159 ~~~~~~~~~~~~g-------~~~~-~~~~~~~~~~~~-~~~~~~-------i~~i~~~~~~~~l~-t~~~dg~i~vwd~~  221 (314)
                      +..+.+++.....       .+-. .+...+.++-.. ..+-+.       -..+.-.+++++++ +++.-..+.+||..
T Consensus       340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~  419 (463)
T KOG1645|consen  340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH  419 (463)
T ss_pred             CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence            3334333332210       0000 011111111100 011000       01222234555544 56666789999999


Q ss_pred             CcEEEEEeeecccCeEEEEEcc--CCcEEEEecCCceEEEEEC
Q 021319          222 EMLCVRTFTKLEWPVRTISFSH--TGDYIASASEDLFIDISNV  262 (314)
Q Consensus       222 ~~~~~~~~~~~~~~v~~~~~sp--~~~~l~s~s~d~~v~v~~~  262 (314)
                      +...++++. .+.+|.+++...  .+.||+.-.+| .++|+..
T Consensus       420 s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LTd~-~v~Iyk~  460 (463)
T KOG1645|consen  420 SFEVVQTLA-LSEPVLDICPNDTNGSSYLALLTDD-RVHIYKN  460 (463)
T ss_pred             hhheeeecc-cCcceeecceeecCCcchhhheecc-eEEEEec
Confidence            999998885 446888887543  24566655444 5666643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=2e-05  Score=71.69  Aligned_cols=201  Identities=9%  Similarity=0.135  Sum_probs=130.6

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc-----EEEEeC
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT-----VRLWDA   96 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~-----v~iwd~   96 (314)
                      .|+|  |++.+..++-|+.||.|-+.+-.-     ..-..+..+...+...-|..++.++|+|.+.|+.     ++|||+
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~-----~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l   99 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSSF-----QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL   99 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecccc-----eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence            5555  468889999999999987775321     1112445566653333344455568888887754     899997


Q ss_pred             CCC------cee---eeEEec-----CceEEEEEccCCCEEEEEeCCCcEEEEEccCC-----eEeeeeccCcceeeEEe
Q 021319           97 RSG------KCS---QQAELS-----GENINITYKPDGTHIAVGNRDDELTILDVRKF-----KPIHRRKFGYEVNEIAW  157 (314)
Q Consensus        97 ~~~------~~~---~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~  157 (314)
                      ..-      .|.   +..+..     .....++.+.+-+.+|+|-.+|.|..+...-.     +.........++..+++
T Consensus       100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence            533      233   222211     22345778888899999999999998854211     11112233567899999


Q ss_pred             ccCCCeEEEEcCCceEEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319          158 NMTGEMFFLTTGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (314)
Q Consensus       158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~  230 (314)
                      ..++...++.....+|..|.+....|.. .+..|+...+|..+++.-..+++++. ..+.+||.+....-.+|.
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            8888875666666778888876444433 35677888999999875554665554 459999987655545554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.58  E-value=1.7e-06  Score=69.58  Aligned_cols=194  Identities=12%  Similarity=0.228  Sum_probs=127.4

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE------------------eeeeccCcceeeEEeccCC--CeEEEEcC
Q 021319          110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKP------------------IHRRKFGYEVNEIAWNMTG--EMFFLTTG  169 (314)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~  169 (314)
                      .+.++.|..-|.+|++|...|.+.++.-....-                  +...+....+..+.|..++  ..+++.+.
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN  107 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN  107 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence            345678888899999999999999987544320                  0011111235667775443  56888899


Q ss_pred             CceEEEEeCCCC------------------C-ce-----------------------eee-eecccceEEEEECCCCCEE
Q 021319          170 NGTVEVLTYPSL------------------R-PL-----------------------DTV-VAHTAGCYCIAIDPMGRYF  206 (314)
Q Consensus       170 ~g~~~~~~~~~~------------------~-~~-----------------------~~~-~~~~~~i~~i~~~~~~~~l  206 (314)
                      +.++++|.....                  . ++                       +.+ ..|..-+++++++.|...+
T Consensus       108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~  187 (460)
T COG5170         108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETL  187 (460)
T ss_pred             CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhee
Confidence            999999975321                  0 00                       001 2366678899999988887


Q ss_pred             EEeeCCCeEEEeeCCCc---EEEEEeeecc-----cCeEEEEEccCC-cEEEEecCCceEEEEECCCCCe------EEE-
Q 021319          207 AVGSADSLVSLWDISEM---LCVRTFTKLE-----WPVRTISFSHTG-DYIASASEDLFIDISNVHTGRT------VHQ-  270 (314)
Q Consensus       207 ~t~~~dg~i~vwd~~~~---~~~~~~~~~~-----~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~~------~~~-  270 (314)
                      .++ .|=.|.+|++.-.   .-+-.++.+.     .-|++..|+|.. ..+...+.-|.|++-|++...+      +.. 
T Consensus       188 lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~  266 (460)
T COG5170         188 LSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL  266 (460)
T ss_pred             eec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh
Confidence            766 4778999998632   1222233332     347788899975 5566778889999999874321      111 


Q ss_pred             -E---ec------cCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          271 -I---PC------RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       271 -~---~~------~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                       +   .+      -.+|..+.|+|+|+++++-+-         -+++||+++.
T Consensus       267 ~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---------ltvkiwDvnm  310 (460)
T COG5170         267 TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---------LTVKIWDVNM  310 (460)
T ss_pred             ccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---------ceEEEEeccc
Confidence             1   11      136889999999999976543         4899999864

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=8.3e-06  Score=67.83  Aligned_cols=81  Identities=16%  Similarity=0.225  Sum_probs=70.4

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccC
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRK  139 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~  139 (314)
                      -+.+|...|.+++++|.+..++..++.+..|+|.|+.+..++..........+++|..|. +++..|...|.+.+||++.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            356788889999999987668999999999999999999888888888888999998765 5677888999999999987


Q ss_pred             Ce
Q 021319          140 FK  141 (314)
Q Consensus       140 ~~  141 (314)
                      ..
T Consensus       268 ~~  269 (463)
T KOG1645|consen  268 PE  269 (463)
T ss_pred             CC
Confidence            64

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.54  E-value=6.2e-06  Score=72.05  Aligned_cols=75  Identities=17%  Similarity=0.257  Sum_probs=64.4

Q ss_pred             ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCC
Q 021319          189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  265 (314)
Q Consensus       189 ~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~  265 (314)
                      ..+..+.|++++|+.+.++.|+.||.|.+||.....  .++......+..++|+|+|.+++.|+.-|.+.+||++-+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            466789999999999999999999999999987663  233345566788999999999999999999999998754

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.51  E-value=8.3e-05  Score=70.23  Aligned_cols=236  Identities=16%  Similarity=0.255  Sum_probs=136.7

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR  146 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  146 (314)
                      +.|.++.|..+. +-++.+..+|.|.+-|..+....-.......+.+++|+||...++..+.++++.+.+ ..+.++...
T Consensus        69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~  146 (1265)
T KOG1920|consen   69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK  146 (1265)
T ss_pred             cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence            578888887664 455567788899999988777665556678888999999999999998877766643 333333221


Q ss_pred             ccC------cceeeEEeccCCCeEEEEcCCceEEEEeCCC-CCceeeeeecccceEEEEECCCCCEEEE-----eeCCCe
Q 021319          147 KFG------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAV-----GSADSL  214 (314)
Q Consensus       147 ~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~t-----~~~dg~  214 (314)
                      ...      ...-.+.|-.....+  -+..|+........ .+.......+ ..=+.|.|--||.++|+     ...-..
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqf--rgs~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQF--RGSEGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccceecccccceee--ecchhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEeccCCcee
Confidence            110      111223332211111  11111111111000 0000000011 12356889999999988     333368


Q ss_pred             EEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe---cCCceEEEEECCC---CCeEEEEeccC-ccceeEEcCCCC
Q 021319          215 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA---SEDLFIDISNVHT---GRTVHQIPCRA-AMNSVEWNPKYN  287 (314)
Q Consensus       215 i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~---s~d~~v~v~~~~~---~~~~~~~~~~~-~i~~v~~~~~~~  287 (314)
                      |++||-. +..-..-.....--.+++|-|.|..+|+-   +.|..|.++.-..   |.-....+... ++..++||-+..
T Consensus       224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence            9999976 32211111222335678999999999976   3456788887532   22222233333 499999999999


Q ss_pred             eeEEEecCCcccccccceEEeccccC
Q 021319          288 LLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       288 ~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      .||.--.++.     ..-+++|-+-|
T Consensus       303 iLAv~~~~~e-----~~~v~lwt~~N  323 (1265)
T KOG1920|consen  303 ILAVVTSNLE-----NSLVQLWTTGN  323 (1265)
T ss_pred             ceeeeecccc-----cceEEEEEecC
Confidence            9998554442     12377776643

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.50  E-value=4.7e-05  Score=68.32  Aligned_cols=171  Identities=15%  Similarity=0.065  Sum_probs=111.6

Q ss_pred             CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC----CCcEEEEEccCCeEeeeeccCcceeeEEeccCCCe
Q 021319           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR----DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM  163 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      .+.+.+.|..+.+...+....+..-.+.++++|+++++.+.    ..++...+......+..+....   ..++.++|+.
T Consensus       214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~---iea~vkdGK~  290 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR---IEEAVKAGKF  290 (635)
T ss_pred             eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH---HHHhhhCCCE
Confidence            45666778777777777777776677889999999988853    2234444433222111111110   0123456666


Q ss_pred             EEEEcCCceEEEEeCCC----CCceeeeeecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcEE------------E
Q 021319          164 FFLTTGNGTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLC------------V  226 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~------------~  226 (314)
                      ..+  .++.+.++|...    ...+..+..-...+..++++|||++++++ ..+.+|.|.|+.+.+.            +
T Consensus       291 ~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv  368 (635)
T PRK02888        291 KTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV  368 (635)
T ss_pred             EEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence            555  367888998776    22333333445667899999999987655 4578999999987552            2


Q ss_pred             EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          227 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       227 ~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      .+.+. .......+|+++|....|---|..|-.|++.+
T Consensus       369 aevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        369 AEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             Eeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            33322 22345688999999888888999999999876

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.50  E-value=8.6e-07  Score=78.94  Aligned_cols=197  Identities=17%  Similarity=0.314  Sum_probs=132.9

Q ss_pred             ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe----EeeeeccCcceeeEEeccC--CCeEEEEcCCceEEEEeCC-
Q 021319          107 LSGENINITYKPDGTHIAVGNRDDELTILDVRKFK----PIHRRKFGYEVNEIAWNMT--GEMFFLTTGNGTVEVLTYP-  179 (314)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~-  179 (314)
                      ..+....+..+|.|+-+++++.-| +.+.|+..+-    .++.+ ..-++-.+.|++.  -.+-++......-.+|.+. 
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~-tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~  100 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHI-TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK  100 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeecc-CcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence            344455677888898888887765 4455654432    22221 1234556677654  4677777777777777763 


Q ss_pred             -CCCce-eeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccCCcEEEEecCCc
Q 021319          180 -SLRPL-DTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHTGDYIASASEDL  255 (314)
Q Consensus       180 -~~~~~-~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~  255 (314)
                       ..+.+ ..+.+|..+++.+-|+|.. ..+|+++.|-.++.||++.... +.....-......++|+-....+...+...
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~  180 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN  180 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence             33333 2346889999999999864 5799999999999999987643 333323334567799997766666667777


Q ss_pred             eEEEEECCCCCe-EEEEe-ccCccceeEEcCC-CCeeEEEecCCcccccccceEEeccccC
Q 021319          256 FIDISNVHTGRT-VHQIP-CRAAMNSVEWNPK-YNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       256 ~v~v~~~~~~~~-~~~~~-~~~~i~~v~~~~~-~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      .|++||...|.. +..++ +-..|++++|+.- ...+.+.+.|        |++|-|+.++
T Consensus       181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d--------~tvkfw~y~k  233 (1081)
T KOG0309|consen  181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND--------GTVKFWDYSK  233 (1081)
T ss_pred             ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC--------Cceeeecccc
Confidence            799999987654 44443 3456889999863 4556667766        6899998865

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=3e-06  Score=76.19  Aligned_cols=132  Identities=21%  Similarity=0.315  Sum_probs=96.3

Q ss_pred             CCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEE
Q 021319          160 TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI  239 (314)
Q Consensus       160 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  239 (314)
                      .+..+++++-.|.+++++....-  .+...|+..      +.+|.++++|+.||+|.|--+-+.....++ ....++.+|
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksi  118 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSI  118 (846)
T ss_pred             hcceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeE
Confidence            36788889999999998875431  233344443      668999999999999999988776554444 456789999


Q ss_pred             EEccC-----CcEEEEecCCceEEEEECC-CCCeEEEEe--ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          240 SFSHT-----GDYIASASEDLFIDISNVH-TGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       240 ~~sp~-----~~~l~s~s~d~~v~v~~~~-~~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +++|+     .+.+++|+.-| +.++.-. -|.......  ..++|.++.|.  |+++|.+++++         +|+|+.
T Consensus       119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G---------v~vyd~  186 (846)
T KOG2066|consen  119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG---------VKVYDT  186 (846)
T ss_pred             EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC---------cEEEec
Confidence            99998     57899999998 6666532 122222222  25789999995  89999999887         677776


Q ss_pred             c
Q 021319          312 E  312 (314)
Q Consensus       312 ~  312 (314)
                      +
T Consensus       187 ~  187 (846)
T KOG2066|consen  187 P  187 (846)
T ss_pred             c
Confidence            4

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=1.4e-07  Score=85.39  Aligned_cols=212  Identities=15%  Similarity=0.219  Sum_probs=146.5

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCC--cEEEEEcc
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDD--ELTILDVR  138 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~--~i~i~d~~  138 (314)
                      +..|....+|++|+.. .+.|+.|+..|.|+++++.+|......+.++.. ..+.-+.+|..+.+.+.-.  ...+|++.
T Consensus      1097 frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            4567788899999865 578999999999999999999765554443333 3355566777776554333  46788876


Q ss_pred             C-CeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee----ecccceEEEEECCCCCEEEEeeCCC
Q 021319          139 K-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV----AHTAGCYCIAIDPMGRYFAVGSADS  213 (314)
Q Consensus       139 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~t~~~dg  213 (314)
                      . +.+.+.+.   +..++.|+..-..-++++......+|+.++..++.++.    +..+.-++..|+|+.+++.   .||
T Consensus      1176 s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG 1249 (1516)
T KOG1832|consen 1176 STGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG 1249 (1516)
T ss_pred             cccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc
Confidence            4 23333322   34567777666666777777888999998877666532    2344457889999999887   566


Q ss_pred             eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCee
Q 021319          214 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL  289 (314)
Q Consensus       214 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l  289 (314)
                        .+||++....++.|........ =.|+|.|.-++.-|     -|||++|-+.++..+.- .-..|.||..|+.+
T Consensus      1250 --vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L-dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL-DQCAVTFNSTGDVM 1316 (1516)
T ss_pred             --eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHHHHHhcCccc-cceEEEeccCccch
Confidence              4899987766666654443222 24999999888665     48999998888876531 24567888877654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.46  E-value=4.9e-06  Score=75.90  Aligned_cols=174  Identities=14%  Similarity=0.186  Sum_probs=127.6

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEE
Q 021319          119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA  198 (314)
Q Consensus       119 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~  198 (314)
                      ++..++.|+....+..+|+++.+.......+..- ...+..++..+++|...|+|.+-+..+.+.+.++..|.+.+..++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            4556777888888899999988776654443221 333455678899999999999999999999999999999888776


Q ss_pred             ECCCCCEEEEeeC---------CCeEEEeeCCCcEEEEEeeecccCeEEEEEccC-CcEEEEecCCceEEEEECCC---C
Q 021319          199 IDPMGRYFAVGSA---------DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-GDYIASASEDLFIDISNVHT---G  265 (314)
Q Consensus       199 ~~~~~~~l~t~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~d~~v~v~~~~~---~  265 (314)
                      +.  |+.|++++.         |..|+|||++.++.+.-+.-+..+ .=+.|+|. -..+|.+|..|...+-|..+   .
T Consensus       225 v~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP  301 (1118)
T KOG1275|consen  225 VQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP  301 (1118)
T ss_pred             cc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence            64  778887765         446899999877655433322222 34678887 46788889999999988443   1


Q ss_pred             --CeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319          266 --RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       266 --~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                        ......++..-+.++.+++++..||.+..++
T Consensus       302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g  334 (1118)
T KOG1275|consen  302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEG  334 (1118)
T ss_pred             ccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence              2233334555699999999999999998663

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.45  E-value=8.3e-06  Score=74.50  Aligned_cols=181  Identities=14%  Similarity=0.220  Sum_probs=124.3

Q ss_pred             CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC
Q 021319           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG  109 (314)
Q Consensus        31 ~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~  109 (314)
                      +++.++-|+....+..+|+.+....     +...-+ ..|.-+..   ++.++.+|..-|+|-+-|.++-+.+..+..+.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~-----r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKET-----RTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             CCcceeecchhhheeeeecccceee-----eeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence            3456677776666667776542211     111111 12555554   34678899999999999999988877776554


Q ss_pred             ceEEEEEccCCCEEEEEeC---------CCcEEEEEccCCeEeeeeccCcceeeEEeccCC-CeEEEEcCCceEEEEeCC
Q 021319          110 ENINITYKPDGTHIAVGNR---------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYP  179 (314)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~  179 (314)
                      ..+ ..|.-.|+.|++++.         |.-++|||+|..+.+..+........+.|+|.- ..+++.+..|...+.+..
T Consensus       218 ~si-SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~  296 (1118)
T KOG1275|consen  218 GSI-SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTA  296 (1118)
T ss_pred             cce-eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccc
Confidence            443 345667888888765         556899999998877766666556667777764 567778888888888732


Q ss_pred             C-CCc-eeeee--ecccceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319          180 S-LRP-LDTVV--AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (314)
Q Consensus       180 ~-~~~-~~~~~--~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~  220 (314)
                      . ..| .....  .....+..++++++++.||.|..+|.|.+|.-
T Consensus       297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            1 222 22222  23345899999999999999999999999974

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.44  E-value=0.00021  Score=67.66  Aligned_cols=196  Identities=15%  Similarity=0.226  Sum_probs=126.8

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEe-ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC---
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVDQLCWDPKHADLIATASGDKTVRLWDA---   96 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~---   96 (314)
                      +.|.++.|-.+...++-+..+|.|.+-|.++..      .++ ..-...|.+++|+|++ ++++-...++++.+-+.   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~------~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~  141 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLE------LEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFE  141 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccc------eeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEecccc
Confidence            589999999999998888889999888765421      222 2345679999999985 68777777778765432   


Q ss_pred             -CC-----------Ccee--------eeEE----------------------ecCceEEEEEccCCCEEEEEe-----CC
Q 021319           97 -RS-----------GKCS--------QQAE----------------------LSGENINITYKPDGTHIAVGN-----RD  129 (314)
Q Consensus        97 -~~-----------~~~~--------~~~~----------------------~~~~~~~~~~~~~~~~l~~~~-----~d  129 (314)
                       -.           ++.+        .++.                      ...+...++|.-||.++++..     ..
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence             10           0000        0000                      112234588999999998832     23


Q ss_pred             CcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEc---CCceEEEEeCCCCCc---eeeeeecccceEEEEECCC
Q 021319          130 DELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTT---GNGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPM  202 (314)
Q Consensus       130 ~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~  202 (314)
                      ..|++||-. +..... ......-.+++|-|.|..+++..   .++.|.+|.-...+.   ...+.....++..++|+.+
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence            689999965 222111 11223446789999998887754   345676765443321   1112223344889999999


Q ss_pred             CCEEEE---eeCCCeEEEeeCCCcE
Q 021319          203 GRYFAV---GSADSLVSLWDISEML  224 (314)
Q Consensus       203 ~~~l~t---~~~dg~i~vwd~~~~~  224 (314)
                      +..||+   ......|++|-+.+.+
T Consensus       301 sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  301 SDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CCceeeeecccccceEEEEEecCeE
Confidence            999987   5555569999988764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.41  E-value=0.00022  Score=62.58  Aligned_cols=257  Identities=10%  Similarity=0.019  Sum_probs=144.9

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC--------CEE-EEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--------SVD-QLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~--------~v~-~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      +..+..++.++.|.-+|.+++..  +....+.....        .+. .+..  . ++.++.++.++.+.-+|..+|+..
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~v--~-~~~v~v~~~~g~l~ald~~tG~~~  143 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKE--IWSVDLSEKDGWFSKNKSALLSGGVTV--A-GGKVYIGSEKGQVYALNAEDGEVA  143 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE--eeEEcCCCcccccccccccccccccEE--E-CCEEEEEcCCCEEEEEECCCCCCc
Confidence            55677777788888888765432  22222222000        000 1111  1 245667888999999999999876


Q ss_pred             eeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeE--Eecc--CCCeEEEEcCCceEEEEeC
Q 021319          103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI--AWNM--TGEMFFLTTGNGTVEVLTY  178 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~g~~~~~~~  178 (314)
                      -.........+--.. .+..++++..++.+..+|.++.+.+.+.....+....  .-+|  .+..++++..+|.+..++.
T Consensus       144 W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        144 WQTKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             ccccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence            655544432211011 2456777888899999999999887766543211000  0011  2345667778888888887


Q ss_pred             CCCCceeeeeecc-c------ceEEEEECC--CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEE
Q 021319          179 PSLRPLDTVVAHT-A------GCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA  249 (314)
Q Consensus       179 ~~~~~~~~~~~~~-~------~i~~i~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  249 (314)
                      .+.+.+....... .      ....+..+|  .+..++.++.+|.+..+|..+++.+-+... .. ...  ....+..|+
T Consensus       223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~~-~~~--~~~~~~~vy  298 (394)
T PRK11138        223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-GS-VND--FAVDGGRIY  298 (394)
T ss_pred             cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-CC-ccC--cEEECCEEE
Confidence            7665443321100 0      000111122  244666677899999999999876543321 11 111  123466777


Q ss_pred             EecCCceEEEEECCCCCeEEEEec-cC-ccceeEEcCCCCeeEEEecCCcccc
Q 021319          250 SASEDLFIDISNVHTGRTVHQIPC-RA-AMNSVEWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       250 s~s~d~~v~v~~~~~~~~~~~~~~-~~-~i~~v~~~~~~~~la~~~~d~~~~~  300 (314)
                      .++.|+.+...|..+|+.+.+... .. ...+...  .+..|..++.|+.++-
T Consensus       299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~  349 (394)
T PRK11138        299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW  349 (394)
T ss_pred             EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence            888999999999999988765431 11 1122222  1344555666665553

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.40  E-value=0.00041  Score=57.12  Aligned_cols=189  Identities=13%  Similarity=0.213  Sum_probs=124.6

Q ss_pred             EEEcc-CCCEEEEEeCCCc-EEEEEccCCeEeeeeccCcc---eeeEEeccCCCeEEEEcC-----CceEEEEeCC-CCC
Q 021319          114 ITYKP-DGTHIAVGNRDDE-LTILDVRKFKPIHRRKFGYE---VNEIAWNMTGEMFFLTTG-----NGTVEVLTYP-SLR  182 (314)
Q Consensus       114 ~~~~~-~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~-~~~  182 (314)
                      ++.+| ....++.+-+-|+ ..++|.++.+.......+..   --.-.|+++|..+++.-.     .|.|-+|+.. ..+
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~   89 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR   89 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence            55667 4455666666665 77889988877665543221   124678999999988743     5899999997 677


Q ss_pred             ceeeeeecccceEEEEECCCCCEEEEeeC------------------CCeEEEeeCCCcEEEEEee----ecccCeEEEE
Q 021319          183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSA------------------DSLVSLWDISEMLCVRTFT----KLEWPVRTIS  240 (314)
Q Consensus       183 ~~~~~~~~~~~i~~i~~~~~~~~l~t~~~------------------dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~  240 (314)
                      .+.++..|.-..-.+.+.|||+.|+++..                  +-.+.+.|..+++.+.+..    .+...++.++
T Consensus        90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa  169 (305)
T PF07433_consen   90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLA  169 (305)
T ss_pred             EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEE
Confidence            78888888888889999999987776621                  1124444555666555422    2455789999


Q ss_pred             EccCCcEEEEecCCc-------eEEEEECCCCCeEEEEec--------cCccceeEEcCCCCeeEEEecCCcccccccce
Q 021319          241 FSHTGDYIASASEDL-------FIDISNVHTGRTVHQIPC--------RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV  305 (314)
Q Consensus       241 ~sp~~~~l~s~s~d~-------~v~v~~~~~~~~~~~~~~--------~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~  305 (314)
                      ++++|..++..=..+       .+-+++  .+..+.-+..        ++=+-+|++++++..+|.++=-       +|.
T Consensus       170 ~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr-------Gg~  240 (305)
T PF07433_consen  170 VDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR-------GGR  240 (305)
T ss_pred             ecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC-------CCE
Confidence            999998777553322       233333  2333333221        2347799999999998877744       466


Q ss_pred             EEeccc
Q 021319          306 FRIYGF  311 (314)
Q Consensus       306 ~~~~~~  311 (314)
                      +.+|+.
T Consensus       241 ~~~~d~  246 (305)
T PF07433_consen  241 VAVWDA  246 (305)
T ss_pred             EEEEEC
Confidence            777754

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.34  E-value=3.2e-06  Score=66.33  Aligned_cols=74  Identities=19%  Similarity=0.344  Sum_probs=60.8

Q ss_pred             cEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           22 KVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        22 ~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      .|++++-+|..+ .+++|+.||.+-+||+....   .+.-.+..|+.++..+-|+|.+++.|++++.||++-.||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            499999888755 56667789999999986532   122246789999999999999999999999999999999764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.33  E-value=0.0011  Score=55.55  Aligned_cols=217  Identities=15%  Similarity=0.124  Sum_probs=124.6

Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEE-EEEccCCCEEEEEeCCCcEEEEEccCCeE---eeeecc
Q 021319           73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKP---IHRRKF  148 (314)
Q Consensus        73 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~  148 (314)
                      .|.+..+.++.+--..+.|.-||..+++... +.......+ ......+.++++.   ..+.+++......   +...+.
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p~~~~~~~~~d~~g~Lv~~~---~g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSPGGFSSGALIDAGGRLIACE---HGVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECCCCcccceeecCCCeEEEEc---cccEEEeccCCceeEEeccccC
Confidence            4556655566677777888888887664322 222222222 3334444333332   2344455433222   111111


Q ss_pred             ---CcceeeEEeccCCCeEEEEcC-----------CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC-C
Q 021319          149 ---GYEVNEIAWNMTGEMFFLTTG-----------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-S  213 (314)
Q Consensus       149 ---~~~~~~~~~~~~~~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d-g  213 (314)
                         ....+.....++|.+.+....           .|.++.++. .......+..+-...+.|+||||++.|..+... +
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence               134567777888888776655           133333332 233333334445567899999999888777665 7


Q ss_pred             eEEEeeCCC--cE----EEE-EeeecccCeEEEEEccCCcEEEEecCCc-eEEEEECCCCCeEEEEecc-CccceeEEc-
Q 021319          214 LVSLWDISE--ML----CVR-TFTKLEWPVRTISFSHTGDYIASASEDL-FIDISNVHTGRTVHQIPCR-AAMNSVEWN-  283 (314)
Q Consensus       214 ~i~vwd~~~--~~----~~~-~~~~~~~~v~~~~~sp~~~~l~s~s~d~-~v~v~~~~~~~~~~~~~~~-~~i~~v~~~-  283 (314)
                      .|.-|++..  +.    ... .+.........++...+|.+-+++-.+| .|.+++.. |+++..+..- ..+++++|- 
T Consensus       186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence            788887752  11    111 1111233455677778888887666665 89999988 9999887653 678888887 


Q ss_pred             CCCCeeEEEecC
Q 021319          284 PKYNLLAYAGDD  295 (314)
Q Consensus       284 ~~~~~la~~~~d  295 (314)
                      |+.+.|...+..
T Consensus       265 ~~~~~L~iTs~~  276 (307)
T COG3386         265 PDLNTLYITSAR  276 (307)
T ss_pred             CCcCEEEEEecC
Confidence            555555444443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=3.3e-05  Score=69.81  Aligned_cols=181  Identities=13%  Similarity=0.123  Sum_probs=122.8

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR  146 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  146 (314)
                      +.+.+.+++   ...++-|.-+|.|++.+.... . .+...+...     ..+|.++++++.||++.|..+-+.+.....
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            445555554   358889999999999986532 1 111111111     568999999999999999999888888888


Q ss_pred             ccCcceeeEEeccC-----CCeEEEEcCCceEEEEeCCCCCcee--eeeecccceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319          147 KFGYEVNEIAWNMT-----GEMFFLTTGNGTVEVLTYPSLRPLD--TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (314)
Q Consensus       147 ~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd  219 (314)
                      ....++.+++++|+     ...+++++..| +.++.-.-.....  .+....++|.++.|.  |+++|=++.+| |++||
T Consensus       110 df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd  185 (846)
T KOG2066|consen  110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD  185 (846)
T ss_pred             ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence            88889999999998     35677777777 6665432221111  233456789999996  77888887776 99999


Q ss_pred             CCCcEEEEEeeecccC------eEEEEEccCCcEEEEecCCceEEEEECC
Q 021319          220 ISEMLCVRTFTKLEWP------VRTISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       220 ~~~~~~~~~~~~~~~~------v~~~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      +...+.+..++.....      ...+.|.++.+.++ |-.| .|+|..+.
T Consensus       186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d-~v~i~~I~  233 (846)
T KOG2066|consen  186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGD-SVKICSIK  233 (846)
T ss_pred             ccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCC-eEEEEEEe
Confidence            9988877666543322      34577777655443 4333 45555554

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.32  E-value=2.3e-07  Score=81.18  Aligned_cols=200  Identities=19%  Similarity=0.275  Sum_probs=128.6

Q ss_pred             cccEEEEEECCCCC--EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC----CCcEEE
Q 021319           20 KKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG----DKTVRL   93 (314)
Q Consensus        20 ~~~V~~v~~s~~g~--~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----D~~v~i   93 (314)
                      ...+.|++++.+.+  .++.|.++|.|-+-.+.... .. .....++|..+.++++|++-+.++||.|-.    |..+.|
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-dS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-DS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcc-cc-cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            34678888877654  46778899999887653211 11 122457889999999999987778877633    688999


Q ss_pred             EeCCCCc--eeeeEEe----cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319           94 WDARSGK--CSQQAEL----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        94 wd~~~~~--~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      ||+.++-  ......+    ......++|..+.+++.+|.....+.++|+|.............+..+...|-..-+++.
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs  213 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS  213 (783)
T ss_pred             eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence            9998762  1111111    122336788889999999999999999999843221111111234455556633334455


Q ss_pred             cCCceEEEEe-CCCCC-ceeeeeecc----cceEEEEECCCCC-EEEEeeCC-CeEEEeeCC
Q 021319          168 TGNGTVEVLT-YPSLR-PLDTVVAHT----AGCYCIAIDPMGR-YFAVGSAD-SLVSLWDIS  221 (314)
Q Consensus       168 ~~~g~~~~~~-~~~~~-~~~~~~~~~----~~i~~i~~~~~~~-~l~t~~~d-g~i~vwd~~  221 (314)
                      ..+|.+.+|| ....+ ++..+...+    ..+..+++.|..+ .+++..+| ++|+++|+.
T Consensus       214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            5699999999 33332 333322111    2378999999754 46666666 689999985

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.31  E-value=0.00076  Score=60.83  Aligned_cols=259  Identities=12%  Similarity=0.042  Sum_probs=142.2

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecC----CCCEE--EEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH----ADSVD--QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h----~~~v~--~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~  105 (314)
                      +..+..++.|+.|.-.|..+....+  .......    ...+.  .+...  +...++.++.|+.|.-+|.++|+..-..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W--~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLW--RYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhc--eeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence            3456667778988888876543222  1111111    00110  11111  1246777888999999999999877665


Q ss_pred             EecCce---EEEEEcc--CCCEEEEEe---------CCCcEEEEEccCCeEeeeeccCcc--------------------
Q 021319          106 ELSGEN---INITYKP--DGTHIAVGN---------RDDELTILDVRKFKPIHRRKFGYE--------------------  151 (314)
Q Consensus       106 ~~~~~~---~~~~~~~--~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~--------------------  151 (314)
                      ......   ..+.-.|  .+..+++++         .++.+..+|..+.+.+.+.+....                    
T Consensus       137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            544331   0111111  124455554         357788899988887766544211                    


Q ss_pred             -e-eeEEeccCCCeEEEEcCCc------------------eEEEEeCCCCCceeeeee--ccc----c---eEEEEE-CC
Q 021319          152 -V-NEIAWNMTGEMFFLTTGNG------------------TVEVLTYPSLRPLDTVVA--HTA----G---CYCIAI-DP  201 (314)
Q Consensus       152 -~-~~~~~~~~~~~~~~~~~~g------------------~~~~~~~~~~~~~~~~~~--~~~----~---i~~i~~-~~  201 (314)
                       + ...+..+.+..++++..++                  .+..++..+.+..-.+..  |..    .   +.-... .-
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence             0 0122233456677776554                  688888877776554431  110    0   000011 12


Q ss_pred             CCC---EEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE-----------------ecCCceEEEEE
Q 021319          202 MGR---YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS-----------------ASEDLFIDISN  261 (314)
Q Consensus       202 ~~~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-----------------~s~d~~v~v~~  261 (314)
                      ++.   .++.++.+|.+...|.++++.+-.....   ...++.+| +...+.                 ...++.+.-.|
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD  372 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD  372 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence            333   5778889999999999999877554321   11234445 222221                 12468899999


Q ss_pred             CCCCCeEEEEecc---------Cccc--eeEEcCCCCeeEEEecCCcccc
Q 021319          262 VHTGRTVHQIPCR---------AAMN--SVEWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       262 ~~~~~~~~~~~~~---------~~i~--~v~~~~~~~~la~~~~d~~~~~  300 (314)
                      ..+|+.+.+....         .+..  .++  ..+..+..++.|+.+|-
T Consensus       373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~a  420 (488)
T cd00216         373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRA  420 (488)
T ss_pred             CCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEE
Confidence            9999999877643         1111  111  13456666677766554

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.28  E-value=0.00036  Score=61.48  Aligned_cols=175  Identities=16%  Similarity=0.223  Sum_probs=95.6

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeee
Q 021319          110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA  189 (314)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  189 (314)
                      .+..+.++|+|+.++++ .+|...++.....+...    ........|.. .+.+++...++++.++.--..+....+..
T Consensus        34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~  107 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKL  107 (443)
T ss_dssp             --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred             CCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc----cCceeEEEEec-CccEEEEECCCeEEEEEcCccccceEEcC
Confidence            35578999999999994 56777777744333222    23456678888 44566666688888864322222112211


Q ss_pred             cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCC----
Q 021319          190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG----  265 (314)
Q Consensus       190 ~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~----  265 (314)
                       +..+..|--   |.+|+..+.+ .|.+||..+++.+.++...  +|..+.|++++.++|-.+.+. +.+.+....    
T Consensus       108 -~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~-i~il~~~~~~~~~  179 (443)
T PF04053_consen  108 -PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS-IYILKYNLEAVAA  179 (443)
T ss_dssp             -SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S-EEEEEE-HHHHHH
T ss_pred             -CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe-EEEEEecchhccc
Confidence             112222222   7777777655 8999999999888887533  389999999999999998774 666554332    


Q ss_pred             -------CeEEEEec-cCccceeEEcCCCCeeEEEecCCcccc
Q 021319          266 -------RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       266 -------~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~  300 (314)
                             ..+..+.- ..+|.+..|.-+  .|.+....+=.|-
T Consensus       180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkYl  220 (443)
T PF04053_consen  180 IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKYL  220 (443)
T ss_dssp             BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEEE
T ss_pred             ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEEE
Confidence                   02222222 568999999765  5556665566673

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.28  E-value=0.00021  Score=64.30  Aligned_cols=133  Identities=17%  Similarity=0.158  Sum_probs=93.7

Q ss_pred             EccCCCEEEEEeCCCcEEEEEccC-----CeEeeeeccCcceeeEEeccCCCeEEEEcC-CceEEEEeCCCCCc------
Q 021319          116 YKPDGTHIAVGNRDDELTILDVRK-----FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSLRP------  183 (314)
Q Consensus       116 ~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~------  183 (314)
                      +.++|++..++  ++.+.++|.++     .+.+..+..+.....+..+|+|+++++++. +.++.+++....+.      
T Consensus       284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            34578777663  57899999988     566677778888999999999999887764 88999999876442      


Q ss_pred             ------eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC----------cEEEEEeeecccCeEEEE------E
Q 021319          184 ------LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----------MLCVRTFTKLEWPVRTIS------F  241 (314)
Q Consensus       184 ------~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~------~  241 (314)
                            ..+.. -...+...+|+++|....+-..|..|..||+.+          ...++++..|-. +-.+.      -
T Consensus       362 ~~~~~vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~-pgh~~~~~g~t~  439 (635)
T PRK02888        362 KPRDAVVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ-PGHNHASMGETK  439 (635)
T ss_pred             CccceEEEeec-cCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc-cceeeecCCCcC
Confidence                  11111 134567889999998888888999999999876          233443322211 12222      2


Q ss_pred             ccCCcEEEEec
Q 021319          242 SHTGDYIASAS  252 (314)
Q Consensus       242 sp~~~~l~s~s  252 (314)
                      .|+|++|++..
T Consensus       440 ~~dgk~l~~~n  450 (635)
T PRK02888        440 EADGKWLVSLN  450 (635)
T ss_pred             CCCCCEEEEcc
Confidence            57888888764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=0.0005  Score=62.95  Aligned_cols=196  Identities=14%  Similarity=0.125  Sum_probs=119.7

Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceEE-EEEccCCCEEEEEeCCC-----cEEEEEccCCe----
Q 021319           73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENIN-ITYKPDGTHIAVGNRDD-----ELTILDVRKFK----  141 (314)
Q Consensus        73 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~----  141 (314)
                      +|++. +..++-|+.||.|-+.+..-.. ...+.. ...++. +....+.++|++.+.|+     .+++|++...+    
T Consensus        30 c~~s~-~~~vvigt~~G~V~~Ln~s~~~-~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSS-TGSVVIGTADGRVVILNSSFQL-IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCC-CceEEEeeccccEEEeccccee-eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            34554 4588899999999888743221 121111 111222 22223345666655544     48999986532    


Q ss_pred             --Ee--eee---cc---CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC--ceeee--eecccceEEEEECCCCCE-E
Q 021319          142 --PI--HRR---KF---GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--PLDTV--VAHTAGCYCIAIDPMGRY-F  206 (314)
Q Consensus       142 --~~--~~~---~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~--~~~~~~i~~i~~~~~~~~-l  206 (314)
                        .+  ++.   +.   ..+...++.+.+-+.+++|-.+|.|..+.-.-.+  -.+..  ....++|+.+++..+++. +
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence              22  111   11   3457788888888999999999999998654322  11222  233568999999988887 3


Q ss_pred             EEeeCCCeEEEeeCCCcE-EEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319          207 AVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       207 ~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      +++. -..|.+|.+.... .++.+..+..++.|.+|++....+++|+.. .+.+|+...-++-..+.
T Consensus       188 Fv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  188 FVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeec
Confidence            3333 4459999987333 245567778889999998876645544443 37888876544444443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=0.0011  Score=58.53  Aligned_cols=115  Identities=15%  Similarity=0.153  Sum_probs=81.4

Q ss_pred             EecCceEEEEEcc-CCCEEEEEe----CCCc----EEEEEccCCeE----eeeeccCcceeeEEeccCCCeEEEEcCCce
Q 021319          106 ELSGENINITYKP-DGTHIAVGN----RDDE----LTILDVRKFKP----IHRRKFGYEVNEIAWNMTGEMFFLTTGNGT  172 (314)
Q Consensus       106 ~~~~~~~~~~~~~-~~~~l~~~~----~d~~----i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  172 (314)
                      ..+..++.+.|+. ++..+.+..    .++.    -.+|+....+.    +.++.....+.+++++|+.+.++.|+.||.
T Consensus       203 rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS  282 (545)
T PF11768_consen  203 RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS  282 (545)
T ss_pred             EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence            3455666777765 344444332    2333    34555544332    233455678899999999999999999999


Q ss_pred             EEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC
Q 021319          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~  222 (314)
                      +.+|+.....  .......-.++.++|+|+|.++++|+..|.+.+||+.-
T Consensus       283 iiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  283 IILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            9999975542  23334455678999999999999999999999999863

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.26  E-value=0.0013  Score=57.18  Aligned_cols=252  Identities=12%  Similarity=0.112  Sum_probs=132.6

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCc---------------------------------------eeeEEe
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK---------------------------------------VKDIEL   62 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~---------------------------------------~~~~~~   62 (314)
                      .|+.+.|+++.-.|+.|...|.|.||.........                                       .+..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999999999999999999998763211000                                       000112


Q ss_pred             ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC---------ceEEEEEc-----cCC---CEEEE
Q 021319           63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---------ENINITYK-----PDG---THIAV  125 (314)
Q Consensus        63 ~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~---------~~~~~~~~-----~~~---~~l~~  125 (314)
                      ....++|.+++.+.-  .+++.|..+|++.|.|+|....+.......         .+.++.|.     .|+   ..+++
T Consensus        83 ~~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   83 DAKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             ---S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            344678999998754  499999999999999999887776544433         12234443     333   57788


Q ss_pred             EeCCCcEEEEEccC-CeEeeeeccCcceeeEEeccCCCeEEEEcCCc--eEEEEeCCCCCce-ee---eeecccceEEEE
Q 021319          126 GNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG--TVEVLTYPSLRPL-DT---VVAHTAGCYCIA  198 (314)
Q Consensus       126 ~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~-~~---~~~~~~~i~~i~  198 (314)
                      |+..|.+.+|.+-. ..      ..+.+..+...       ....+.  .+..++....++. ..   +..-..+   +.
T Consensus       161 GTn~G~v~~fkIlp~~~------g~f~v~~~~~~-------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g---~~  224 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSN------GRFSVQFAGAT-------TNHDSPILSIIPINADTGESALATISAMQGLSKG---IS  224 (395)
T ss_dssp             EETTSEEEEEEEEE-GG------G-EEEEEEEEE---------SS----EEEEEETTT--B-B-BHHHHHGGGGT-----
T ss_pred             EeCCCCEEEEEEecCCC------CceEEEEeecc-------ccCCCceEEEEEEECCCCCcccCchhHhhccccC---CC
Confidence            88889888887631 10      00111111000       000111  1111122221111 00   0000000   00


Q ss_pred             ECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc-----cCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319          199 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS-----HTGDYIASASEDLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       199 ~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~  273 (314)
                      .    ..+++...+..+|++...+.+...+..........+++-     ..+..|++-..+|.++++.+..-+.+..+..
T Consensus       225 i----~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  225 I----PGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             ------EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             c----CcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence            0    123333446669999998777665544332334445553     3677899999999999999999888877654


Q ss_pred             c-----CccceeEEcCCCCeeEEEecC
Q 021319          274 R-----AAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       274 ~-----~~i~~v~~~~~~~~la~~~~d  295 (314)
                      .     ..+....++++|..+...|..
T Consensus       301 ~~~~d~~~~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  301 PPPLDSRRLSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred             CCccccccccccEECCCCCEEEEeCcc
Confidence            2     235677889999988777644

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.22  E-value=0.0011  Score=58.52  Aligned_cols=228  Identities=14%  Similarity=0.150  Sum_probs=117.3

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      +..+.+....-..+.+.++|+|++++.++ ||.-.|+....    ....  .   .+.-..++|.+.  +.+|.-....+
T Consensus        23 l~~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~----~r~k--~---~G~g~~~vw~~~--n~yAv~~~~~~   90 (443)
T PF04053_consen   23 LSVKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALA----WRNK--A---FGSGLSFVWSSR--NRYAVLESSST   90 (443)
T ss_dssp             ---EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTT----TEEE--E---EEE-SEEEE-TS--SEEEEE-TTS-
T ss_pred             EEeccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccC----Cccc--c---cCceeEEEEecC--ccEEEEECCCe
Confidence            34455655666789999999999988855 78888886321    1111  1   122345788773  45667777889


Q ss_pred             EEEE-eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC
Q 021319           91 VRLW-DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        91 v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      |+|+ +.. ...............+..   |..|.+.+.+ .|.+||..+.+.+.++.... +..+.|+++++.++..+.
T Consensus        91 I~I~kn~~-~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen   91 IKIYKNFK-NEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             EEEEETTE-E-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S
T ss_pred             EEEEEcCc-cccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC
Confidence            9996 332 221122222222222322   7777777554 89999999999998888663 789999999999888875


Q ss_pred             CceEEEEeCCCC----------C-ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE
Q 021319          170 NGTVEVLTYPSL----------R-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT  238 (314)
Q Consensus       170 ~g~~~~~~~~~~----------~-~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  238 (314)
                      + .+.+++....          + .+..+......|.+..|..+  .++-.... .++.+  -.+.. ..+...+.++.-
T Consensus       165 ~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~-~~i~~ld~~~yl  237 (443)
T PF04053_consen  165 D-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGET-GIIAHLDKPLYL  237 (443)
T ss_dssp             --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEE-EEEEE-SS--EE
T ss_pred             C-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCc-ceEEEcCCceEE
Confidence            5 5555554221          0 12222222457888888755  44433333 66663  23322 222333456777


Q ss_pred             EEEccCCcEEEEecCCceEEEEECC
Q 021319          239 ISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      +.+.|....+.....|+.+..+.+.
T Consensus       238 lgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  238 LGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEEETTTTEEEEE-TT--EEEEE--
T ss_pred             EEEEccCCEEEEEECCCCEEEEEEC
Confidence            7777877777777788777776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.21  E-value=0.0029  Score=54.67  Aligned_cols=257  Identities=15%  Similarity=0.224  Sum_probs=132.6

Q ss_pred             CCCCCEEEEe---------eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           29 NCTGTKLASG---------SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        29 s~~g~~l~s~---------~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      |||+++++-.         +..+.+.|+|++++.   ..  .+......+....|+|++ +.++-. .++.|.+++..++
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---~~--~l~~~~~~~~~~~~sP~g-~~~~~v-~~~nly~~~~~~~   73 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---IT--PLTPPPPKLQDAKWSPDG-KYIAFV-RDNNLYLRDLATG   73 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---EE--ESS-EETTBSEEEE-SSS-TEEEEE-ETTEEEEESSTTS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---eE--ECcCCccccccceeecCC-CeeEEE-ecCceEEEECCCC
Confidence            5778776652         234567788887532   22  222225678889999985 566544 4578999988776


Q ss_pred             ceeeeEEec------------------CceEEEEEccCCCEEEEEeCCC-cEEEEEc---cCC-e---Eeeeec------
Q 021319          100 KCSQQAELS------------------GENINITYKPDGTHIAVGNRDD-ELTILDV---RKF-K---PIHRRK------  147 (314)
Q Consensus       100 ~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~---~~~-~---~~~~~~------  147 (314)
                      ...+.-...                  .....+.|+||+++|+....|. .+..+.+   ... .   .+..++      
T Consensus        74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~  153 (353)
T PF00930_consen   74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD  153 (353)
T ss_dssp             EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred             CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence            433221111                  1123578999999998765544 2333322   111 0   000000      


Q ss_pred             ----------------------------cCcceeeEEeccCCCeEEEE-c-C---CceEEEEeCCCCCceeeee-ecccc
Q 021319          148 ----------------------------FGYEVNEIAWNMTGEMFFLT-T-G---NGTVEVLTYPSLRPLDTVV-AHTAG  193 (314)
Q Consensus       148 ----------------------------~~~~~~~~~~~~~~~~~~~~-~-~---~g~~~~~~~~~~~~~~~~~-~~~~~  193 (314)
                                                  ...-+..+.|.+++..+++. . .   ...+.+++....+...... .....
T Consensus       154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W  233 (353)
T PF00930_consen  154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW  233 (353)
T ss_dssp             ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred             cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence                                        01123456777777633332 1 1   1233344443333211111 11111


Q ss_pred             e---EEEEEC-CCC-CEEEEeeCCCeEEE--eeCCCcEEEEEeeecccCeEE-EEEccCCcEE-EEecCC--ceEEEE--
Q 021319          194 C---YCIAID-PMG-RYFAVGSADSLVSL--WDISEMLCVRTFTKLEWPVRT-ISFSHTGDYI-ASASED--LFIDIS--  260 (314)
Q Consensus       194 i---~~i~~~-~~~-~~l~t~~~dg~i~v--wd~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l-~s~s~d--~~v~v~--  260 (314)
                      +   ....+. +++ .++.....+|.-++  ++...+. .+.+...++.|.. +.++++++.| ++|..+  ..-++|  
T Consensus       234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v  312 (353)
T PF00930_consen  234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV  312 (353)
T ss_dssp             SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred             eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence            1   244443 554 45556667885444  4554454 4567777788855 6788886654 466653  233444  


Q ss_pred             ECCCCCeEEEEeccCccc-eeEEcCCCCeeEEEe
Q 021319          261 NVHTGRTVHQIPCRAAMN-SVEWNPKYNLLAYAG  293 (314)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~-~v~~~~~~~~la~~~  293 (314)
                      +...+..+..+.+..... .+.|||++++++-..
T Consensus       313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            454356666776666666 999999999886544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.20  E-value=0.0019  Score=52.22  Aligned_cols=197  Identities=17%  Similarity=0.213  Sum_probs=114.7

Q ss_pred             EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC--ceEEEEEccCCCEEEEEeCCCcEEEEEc
Q 021319           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDV  137 (314)
Q Consensus        60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~  137 (314)
                      ..+.+-...+..++|+|+.+.+++.....+.|...+. +|+.++...+.+  ..-.+++..++.++++..+++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            3556666679999999987778888888888888886 477777776653  4567888888888777777899999887


Q ss_pred             cCCe----E--eeeecc------CcceeeEEeccCCCeEEEEcCCceEEEEeCCC---CCceeee--------eecccce
Q 021319          138 RKFK----P--IHRRKF------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS---LRPLDTV--------VAHTAGC  194 (314)
Q Consensus       138 ~~~~----~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~--------~~~~~~i  194 (314)
                      ....    .  ...+..      ......++|.+..+.++++-+..-..+|....   ...+...        ......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            3321    1  122222      23468899999988888887765555555432   1111110        0122346


Q ss_pred             EEEEECCC-CCEEEEeeCCCeEEEeeCCCcEEEEEeeecc---------cCeEEEEEccCCcEEEEecCCceEEE
Q 021319          195 YCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLE---------WPVRTISFSHTGDYIASASEDLFIDI  259 (314)
Q Consensus       195 ~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~l~s~s~d~~v~v  259 (314)
                      ..++++|. +.+++.......+..+| .+++.+..+.-..         ...-.|+|.|+|.+.++ |+-....+
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~  246 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR  246 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence            78889885 56777788888999999 5676665543222         13567999999866554 44444433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.20  E-value=0.0019  Score=55.01  Aligned_cols=208  Identities=18%  Similarity=0.169  Sum_probs=120.8

Q ss_pred             CcEEEEeCCCCceeeeEEecCce--EE---EEEccC----CCEEEEEeC---------C-CcEEEEEccCC-------eE
Q 021319           89 KTVRLWDARSGKCSQQAELSGEN--IN---ITYKPD----GTHIAVGNR---------D-DELTILDVRKF-------KP  142 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~~--~~---~~~~~~----~~~l~~~~~---------d-~~i~i~d~~~~-------~~  142 (314)
                      ..|++.|..+...+....+....  .+   +.+..+    ..++++|+.         . |.+.++++...       +.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            36788888877777666654432  22   223322    467777764         2 78999998873       23


Q ss_pred             eeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC
Q 021319          143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (314)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~  222 (314)
                      +...+....+.++...  +..+++ +.++.+.+|++...+.+.....+...+...++...+.++++|+....+.++..+.
T Consensus        82 i~~~~~~g~V~ai~~~--~~~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGRLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTEEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred             EEEEeecCcceEhhhh--CCEEEE-eecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence            3444556667776644  334443 3458889998876653333323333333333433466999999988888885542


Q ss_pred             -cEEEEEeee--cccCeEEEEEccCCcEEEEecCCceEEEEECCC-------CC-eE---EEEeccCcccee---EEcCC
Q 021319          223 -MLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHT-------GR-TV---HQIPCRAAMNSV---EWNPK  285 (314)
Q Consensus       223 -~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~-------~~-~~---~~~~~~~~i~~v---~~~~~  285 (314)
                       ...+..+..  ....+.++.|-++++.++.+..+|.+.++....       +. .+   -.+..+..|+++   ...|.
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~  238 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPR  238 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeec
Confidence             333333332  233478888877778999999999999998752       22 23   234456677777   55552


Q ss_pred             --C------CeeEEEecCCccc
Q 021319          286 --Y------NLLAYAGDDKNKY  299 (314)
Q Consensus       286 --~------~~la~~~~d~~~~  299 (314)
                        .      +.+.+++.+++++
T Consensus       239 ~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  239 SGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             SSSS-TTEEEEEEEEETTS-EE
T ss_pred             CCCCcccccceEEEEecCCEEE
Confidence              2      2477888887654

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=1.2e-05  Score=70.61  Aligned_cols=93  Identities=13%  Similarity=0.174  Sum_probs=80.7

Q ss_pred             ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeE-EEEEccCCcEEEEecCCceEEEEECCCCCeEE
Q 021319          191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR-TISFSHTGDYIASASEDLFIDISNVHTGRTVH  269 (314)
Q Consensus       191 ~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~  269 (314)
                      ...+.-+.|+|....+|++..+|.+.+..+. .+++-++.-+.-++. +++|.|||+.||.|=+||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4467889999999999999999999999987 777888876666677 99999999999999999999999999998887


Q ss_pred             E--EeccCccceeEEcC
Q 021319          270 Q--IPCRAAMNSVEWNP  284 (314)
Q Consensus       270 ~--~~~~~~i~~v~~~~  284 (314)
                      .  +.....|.++-|.|
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            7  44466788888864

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.0039  Score=54.36  Aligned_cols=216  Identities=19%  Similarity=0.195  Sum_probs=144.8

Q ss_pred             EEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe--CCCcEEEEeCCCCc
Q 021319           24 HSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSGK  100 (314)
Q Consensus        24 ~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~D~~v~iwd~~~~~  100 (314)
                      ..+..++++. ..++...+..|.+.|.+...   .......+.  ....++++|+++.+.++-.  .++++.+.|..+++
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---VLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccc---eeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence            4567777877 45555567899999865422   111112222  4567888988766666666  47999999998888


Q ss_pred             eeeeEEecCceEEEEEccCCCEEEEEe-CCCcEEEEEccCCeEee-e----eccCcceeeEEeccCCCeEEEEcCC---c
Q 021319          101 CSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIH-R----RKFGYEVNEIAWNMTGEMFFLTTGN---G  171 (314)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~---g  171 (314)
                      .............+++.|+|+.+++.. .++.+.++|........ .    .........+.+.+++..+.+....   +
T Consensus       152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~  231 (381)
T COG3391         152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN  231 (381)
T ss_pred             EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence            777755554568899999999777665 78889999977665542 1    3334456778899999976666554   4


Q ss_pred             eEEEEeCCCCCceee-ee-ecccceEEEEECCCCCEEEEeeCC-CeEEEeeCCCcEEEEEeeecc---cCeEEEEEccCC
Q 021319          172 TVEVLTYPSLRPLDT-VV-AHTAGCYCIAIDPMGRYFAVGSAD-SLVSLWDISEMLCVRTFTKLE---WPVRTISFSHTG  245 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~-~~-~~~~~i~~i~~~~~~~~l~t~~~d-g~i~vwd~~~~~~~~~~~~~~---~~v~~~~~sp~~  245 (314)
                      .+...+......... .. ... ....+.++|+|+.+.+.... +.+.+-|..+......+....   ..+..+++.+..
T Consensus       232 ~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         232 NVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             eEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence            888888766544333 11 122 45678999999998877444 789999998877766654332   235556555543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.15  E-value=0.00026  Score=62.06  Aligned_cols=183  Identities=15%  Similarity=0.195  Sum_probs=109.6

Q ss_pred             EEEEEccCCCEEEEE---eCC-CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEc-CCceEEEE--eCCCCCce
Q 021319          112 INITYKPDGTHIAVG---NRD-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVL--TYPSLRPL  184 (314)
Q Consensus       112 ~~~~~~~~~~~l~~~---~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~  184 (314)
                      ..-.|+|++..++-.   ... ..+.++|+...+..........-..-+|+|+|+.+++.. .+|...+|  ++...+ +
T Consensus       196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~  274 (425)
T COG0823         196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L  274 (425)
T ss_pred             eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c
Confidence            345688888776533   222 358888888776544444444455668999998877664 45655555  444433 2


Q ss_pred             eeeeecccceEEEEECCCCCEEE-EeeCCCe--EEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC-ce--EE
Q 021319          185 DTVVAHTAGCYCIAIDPMGRYFA-VGSADSL--VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED-LF--ID  258 (314)
Q Consensus       185 ~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-~~--v~  258 (314)
                      ..+..-.+.-..=.|+|||+.++ +.+..|.  |.++|+..... +.+......-..-.|||||++++-.+.. |.  |.
T Consensus       275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~  353 (425)
T COG0823         275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDID  353 (425)
T ss_pred             eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeE
Confidence            22222222223557999999876 5555665  55555544332 3332222222256799999999877643 43  66


Q ss_pred             EEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319          259 ISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       259 v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      +.+..++...+.+........-.|.|++.++.+.+.-.
T Consensus       354 ~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         354 KNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             EeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence            66776666555555445566778888888887766543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.05  E-value=0.0012  Score=57.94  Aligned_cols=183  Identities=17%  Similarity=0.248  Sum_probs=106.2

Q ss_pred             EEEEEEcCCCCCEEEEEeCC---CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEE-eCCCc--EEEEEccCCeE
Q 021319           69 VDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDE--LTILDVRKFKP  142 (314)
Q Consensus        69 v~~l~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~--i~i~d~~~~~~  142 (314)
                      +..-.|+|++..+....-..   ..+.++|+.+++........+....-.|+|||+.|+.. ..|+.  |.++|+.....
T Consensus       195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~  274 (425)
T COG0823         195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL  274 (425)
T ss_pred             eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence            33446777665443332222   35888899988877777766777778899999988754 45665  55667765542


Q ss_pred             eeeeccC-cceeeEEeccCCCeEEEEcC-Cc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC-Ce--E
Q 021319          143 IHRRKFG-YEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-SL--V  215 (314)
Q Consensus       143 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d-g~--i  215 (314)
                       .+.... ..-..=.|+|+|+.++..+. .|  .+.+++.+.... ..+......-..-.++|+|++++..+.. |.  |
T Consensus       275 -~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i  352 (425)
T COG0823         275 -PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDI  352 (425)
T ss_pred             -eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceee
Confidence             222211 12225578999998877654 34  444445544433 2232223333366799999998877653 44  5


Q ss_pred             EEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC
Q 021319          216 SLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED  254 (314)
Q Consensus       216 ~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d  254 (314)
                      .+.|+.++...+.+. .......-+|.|+++.+...+.-
T Consensus       353 ~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         353 DKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence            556554433222221 11122334677888877755543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.03  E-value=0.0032  Score=50.97  Aligned_cols=182  Identities=16%  Similarity=0.211  Sum_probs=102.6

Q ss_pred             cCceEEEEEccCCCEE-EEEeCCCcEEEEEccCCeEeeeeccC--cceeeEEeccCCCeEEEEcCCceEEEEeCCCCC--
Q 021319          108 SGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--  182 (314)
Q Consensus       108 ~~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--  182 (314)
                      ..+...++|.|+.+.| ++....+.|..++. ..+.+.++...  .....+++.-++.++++.-..+.+..+......  
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            3456789999986655 55666677777776 45666665443  457788887666666655568888888773321  


Q ss_pred             -ce---eeee-----ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC---cEEEE--Eee------ecccCeEEEEEc
Q 021319          183 -PL---DTVV-----AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE---MLCVR--TFT------KLEWPVRTISFS  242 (314)
Q Consensus       183 -~~---~~~~-----~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~---~~~~~--~~~------~~~~~v~~~~~s  242 (314)
                       ..   ..+.     .++.+...+++++.++.|+.+-...-..+|.+..   ...+.  ...      .....+++++++
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~  179 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD  179 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence             11   1111     2445688999999877776666665566666542   11111  111      123357899999


Q ss_pred             cC-CcEEEEecCCceEEEEECCCCCeEEEEeccC----------ccceeEEcCCCCeeEE
Q 021319          243 HT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA----------AMNSVEWNPKYNLLAY  291 (314)
Q Consensus       243 p~-~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~----------~i~~v~~~~~~~~la~  291 (314)
                      |. +.+++-..++..+...| .+|+++..+....          ---.|+|.|+|++.++
T Consensus       180 p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  180 PRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             TTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred             CCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence            87 56777777888899998 7888887766432          1348999999977653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>smart00320 WD40 WD40 repeats

Probab=98.02  E-value=1.4e-05  Score=43.71  Aligned_cols=36  Identities=39%  Similarity=0.571  Sum_probs=32.3

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEee
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH   48 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~   48 (314)
                      ...+.+|...|.++.|+++++.+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345678999999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.98  E-value=0.0071  Score=50.66  Aligned_cols=243  Identities=14%  Similarity=0.171  Sum_probs=131.8

Q ss_pred             EEEECCCCCEEEEee----------CCCcEEEeecCCCCCCceeeEEeecC-CCC----EEEEEEcCCCCCEEEEE--eC
Q 021319           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGH-ADS----VDQLCWDPKHADLIATA--SG   87 (314)
Q Consensus        25 ~v~~s~~g~~l~s~~----------~D~~v~iw~~~~~~~~~~~~~~~~~h-~~~----v~~l~~~~~~~~~l~s~--~~   87 (314)
                      .+..|||++.+.++.          ..-.|.+||..+..  ....++++.- ...    ...+.++.++ .+++..  +-
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~--~~~EI~iP~k~R~~~~~~~~~~~ls~dg-k~~~V~N~TP  116 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS--PTGEIEIPPKPRAQVVPYKNMFALSADG-KFLYVQNFTP  116 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE--EEEEEEETTS-B--BS--GGGEEE-TTS-SEEEEEEESS
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc--ccceEecCCcchheecccccceEEccCC-cEEEEEccCC
Confidence            355789999887753          23378899986532  2333445432 111    1123444443 232221  22


Q ss_pred             CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEcc-CCeEeeee-c--c---CcceeeEEeccC
Q 021319           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRR-K--F---GYEVNEIAWNMT  160 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~-~--~---~~~~~~~~~~~~  160 (314)
                      -.+|.+-|+..++........+.....-..+  .-+.+-+.||++.-..+. ..+...+. +  .   ......-++...
T Consensus       117 a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             CCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            3566777777777766665554433322222  235566677887777665 33332111 1  0   111122234445


Q ss_pred             CCeEEEEcCCceEEEEeCCCCCce--eeeee----------cccceEEEEECCCCCEEEEe---eCCC-------eEEEe
Q 021319          161 GEMFFLTTGNGTVEVLTYPSLRPL--DTVVA----------HTAGCYCIAIDPMGRYFAVG---SADS-------LVSLW  218 (314)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~----------~~~~i~~i~~~~~~~~l~t~---~~dg-------~i~vw  218 (314)
                      +..+++.+.+|.++-.++......  ..+..          -.++-.-+++++....|.+-   +.+|       .|-++
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            667777888899988887654421  11110          01223456777654433322   1222       48888


Q ss_pred             eCCCcEEEEEeeecccCeEEEEEccCCc-EEEEe-cCCceEEEEECCCCCeEEEEec
Q 021319          219 DISEMLCVRTFTKLEWPVRTISFSHTGD-YIASA-SEDLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~-s~d~~v~v~~~~~~~~~~~~~~  273 (314)
                      |+.+.+++.++.. +.++.+|+.+-+.+ +|++. ..++.+.++|..+|+.++.+..
T Consensus       275 D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  275 DLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            9999999988753 34678899998765 66554 4689999999999999998864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.96  E-value=0.013  Score=52.90  Aligned_cols=248  Identities=15%  Similarity=0.141  Sum_probs=140.8

Q ss_pred             CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC---CCEE-EEEEcCCCCCEEEEEe---------CCCcEEEEeCCCC
Q 021319           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA---DSVD-QLCWDPKHADLIATAS---------GDKTVRLWDARSG   99 (314)
Q Consensus        33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~---~~v~-~l~~~~~~~~~l~s~~---------~D~~v~iwd~~~~   99 (314)
                      ..++.++.|+.|.-+|.++..  .........+.   ..+. ...+.  + .+++.++         .++.+.-.|..+|
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~--~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG  185 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGK--QVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETG  185 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCC--EeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCC
Confidence            567777788999988887643  22222222220   0011 11111  1 2444443         3678888999999


Q ss_pred             ceeeeEEecCce----------------------EEEEEccCCCEEEEEeCCC------------------cEEEEEccC
Q 021319          100 KCSQQAELSGEN----------------------INITYKPDGTHIAVGNRDD------------------ELTILDVRK  139 (314)
Q Consensus       100 ~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~d~------------------~i~i~d~~~  139 (314)
                      +..-........                      ....+.+.+..+++++.++                  .+..+|+.+
T Consensus       186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t  265 (488)
T cd00216         186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT  265 (488)
T ss_pred             ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence            876554432110                      0234455567788887665                  688999999


Q ss_pred             CeEeeeeccCcc-ee--------eEE-e-ccCCC---eEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCE
Q 021319          140 FKPIHRRKFGYE-VN--------EIA-W-NMTGE---MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY  205 (314)
Q Consensus       140 ~~~~~~~~~~~~-~~--------~~~-~-~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  205 (314)
                      .+.+...+.... ..        .+. . ..++.   .++++..+|.+..++..+.+.+-.....   ...++.+| +..
T Consensus       266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~v  341 (488)
T cd00216         266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLV  341 (488)
T ss_pred             CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceE
Confidence            888776543211 00        000 0 01222   5677788999999999888776544311   11233444 222


Q ss_pred             EEE-----------------eeCCCeEEEeeCCCcEEEEEeeecc--------cCeEEEEEccCCcEEEEecCCceEEEE
Q 021319          206 FAV-----------------GSADSLVSLWDISEMLCVRTFTKLE--------WPVRTISFSHTGDYIASASEDLFIDIS  260 (314)
Q Consensus       206 l~t-----------------~~~dg~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~sp~~~~l~s~s~d~~v~v~  260 (314)
                      ++.                 ...+|.+.-.|+.+++.+-+.....        .+...-...-.+.+|+.++.|+.++.+
T Consensus       342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al  421 (488)
T cd00216         342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF  421 (488)
T ss_pred             EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence            221                 1246788888988887764443220        111000111256788889999999999


Q ss_pred             ECCCCCeEEEEeccCccce--eEEcCCCCee
Q 021319          261 NVHTGRTVHQIPCRAAMNS--VEWNPKYNLL  289 (314)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~--v~~~~~~~~l  289 (314)
                      |..+|+.+........+.+  +.+..++++.
T Consensus       422 d~~tG~~lW~~~~~~~~~a~P~~~~~~g~~y  452 (488)
T cd00216         422 DATTGKELWKFRTPSGIQATPMTYEVNGKQY  452 (488)
T ss_pred             ECCCCceeeEEECCCCceEcCEEEEeCCEEE
Confidence            9999999988776554432  2334455443

The alignment model contains an 8-bladed beta-propeller.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.95  E-value=0.00023  Score=64.42  Aligned_cols=131  Identities=14%  Similarity=0.190  Sum_probs=101.8

Q ss_pred             eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCC------------CEEEEeeCCCeEEEee
Q 021319          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG------------RYFAVGSADSLVSLWD  219 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~------------~~l~t~~~dg~i~vwd  219 (314)
                      ...+.|++.|-.  +-+....+.+.|-.+.+.+..+..|...|+.+.|.|..            -.+|+++..|.|.+||
T Consensus        18 ~~A~Dw~~~GLi--AygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSGLI--AYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccceE--EEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            345667777733  33445677888888888888888999999999996632            2578888899999999


Q ss_pred             CCCcEEEEEeeecccCeEEEEEccC---C-cEEEEecCCceEEEEECCCCCeEEEEeccCccc-eeEEcC
Q 021319          220 ISEMLCVRTFTKLEWPVRTISFSHT---G-DYIASASEDLFIDISNVHTGRTVHQIPCRAAMN-SVEWNP  284 (314)
Q Consensus       220 ~~~~~~~~~~~~~~~~v~~~~~sp~---~-~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~-~v~~~~  284 (314)
                      ...+..+..+..+..++..++|-|.   . .+|+.-..-..+.+|+..+|.++.+..+...+. ++.+-|
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP  165 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence            9888777778888889999998753   4 466666777889999999999999887655554 477777

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.87  E-value=0.00019  Score=65.57  Aligned_cols=107  Identities=16%  Similarity=0.216  Sum_probs=85.2

Q ss_pred             EEEccCCCEEEEEe----CCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeee
Q 021319          114 ITYKPDGTHIAVGN----RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA  189 (314)
Q Consensus       114 ~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  189 (314)
                      ..|+|...++++++    ..|++.||- .++.|.....-+..+.++.|+|..-.++.+-+.|.+.+|.....+.-.....
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t   99 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET   99 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence            56888888888776    356777773 3444555555556677899999998888898999999998766655445567


Q ss_pred             cccceEEEEECCCCCEEEEeeCCCeEEEeeCC
Q 021319          190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (314)
Q Consensus       190 ~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~  221 (314)
                      |..+|..+.||++|..|.++..-|.+.+|...
T Consensus       100 h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  100 HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            99999999999999999999999999999875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.85  E-value=0.012  Score=49.23  Aligned_cols=197  Identities=21%  Similarity=0.268  Sum_probs=109.7

Q ss_pred             CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEe----------CCCcEEEEEccCCeEeeeeccCc--------
Q 021319           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN----------RDDELTILDVRKFKPIHRRKFGY--------  150 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~--------  150 (314)
                      +.+.+.|..+++........-.. .+..+|+++.+++.+          +...|.+||..+..+...+..+.        
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~   95 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP   95 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred             ceEEEEECCCCcEEEEeecccCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence            47889999888876655443322 356789999988644          24469999999998876554432        


Q ss_pred             ceeeEEeccCCCeEEEEc--CCceEEEEeCCCCCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCC-CcEEE
Q 021319          151 EVNEIAWNMTGEMFFLTT--GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDIS-EMLCV  226 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~-~~~~~  226 (314)
                      .....+.+.+++.+++..  -...|.+.|+...+-+.++..  .+  |..+-|. .+-|.+-|.||.+....+. .++..
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CC--EEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence            123345556666555542  234555666555443333211  11  2222222 2345566666666666554 22221


Q ss_pred             EEee--------------------------ecccCeE---------------------------------EEEEccCCcE
Q 021319          227 RTFT--------------------------KLEWPVR---------------------------------TISFSHTGDY  247 (314)
Q Consensus       227 ~~~~--------------------------~~~~~v~---------------------------------~~~~sp~~~~  247 (314)
                      ++-.                          -+...|.                                 -+++++....
T Consensus       172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR  251 (342)
T ss_dssp             EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred             EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence            1100                          0000111                                 1455554443


Q ss_pred             EEEecC--------C--ceEEEEECCCCCeEEEEeccCccceeEEcCCCC-eeE
Q 021319          248 IASASE--------D--LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLA  290 (314)
Q Consensus       248 l~s~s~--------d--~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-~la  290 (314)
                      |..--.        |  -.|.++|+.+++.+..++....+.+|+.+.+.+ +|.
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~  305 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLY  305 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEE
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEE
Confidence            333211        2  358888999999999998878899999998765 443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.84  E-value=0.004  Score=49.55  Aligned_cols=110  Identities=17%  Similarity=0.112  Sum_probs=83.5

Q ss_pred             CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEE
Q 021319          120 GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI  199 (314)
Q Consensus       120 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~  199 (314)
                      ..++++|+..+.+...|..+.+.......+.++.+-+.- -+++++.++.+|.+++.+..+......+...+.--.....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~  101 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC  101 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence            356778888888999999988887776666666554443 6788999999999999998887655555432221223346


Q ss_pred             CCCCCEEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319          200 DPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (314)
Q Consensus       200 ~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~  230 (314)
                      ++++..+..|+.|+.....|.++..++.+.+
T Consensus       102 d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             cCCCceEEEecCCCcEEEecccccceEEecc
Confidence            7889999999999999999999988886654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=9.7e-05  Score=65.18  Aligned_cols=93  Identities=18%  Similarity=0.269  Sum_probs=75.8

Q ss_pred             cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceE-EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE
Q 021319          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY-CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (314)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~  228 (314)
                      ..+.-+.|+|.-+.++...++|.+-+..+. .+.+.++..+..+++ +++|.|||+.+|.|-.||+|++.|+.++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            446678899999999999999999888876 666777776777777 999999999999999999999999999887766


Q ss_pred             ee-ecccCeEEEEEcc
Q 021319          229 FT-KLEWPVRTISFSH  243 (314)
Q Consensus       229 ~~-~~~~~v~~~~~sp  243 (314)
                      +. -.+.+|.++-|+|
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            31 2344677777753

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.00057  Score=62.64  Aligned_cols=71  Identities=18%  Similarity=0.305  Sum_probs=57.3

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      .+++++|+|..-.|+.|-.-|.+.+|.......    ......|..+|..+.|++++ +.++|+..-|.|.+|-..
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~----htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET----HTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCcee----eeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence            466899999988899999999999998764321    11234699999999999985 688999999999999654

>smart00320 WD40 WD40 repeats

Probab=97.78  E-value=0.00012  Score=39.68  Aligned_cols=38  Identities=34%  Similarity=0.494  Sum_probs=33.0

Q ss_pred             EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319          224 LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       224 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~  261 (314)
                      .++..+..+...+.+++|+|.+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44556667778899999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.78  E-value=0.016  Score=48.11  Aligned_cols=225  Identities=15%  Similarity=0.190  Sum_probs=120.8

Q ss_pred             CCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE----
Q 021319           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA----  105 (314)
Q Consensus        30 ~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~----  105 (314)
                      ..++.|+.|..+| |.+++... .....   .. .+...|..+...|.-+ .++.- .|+.+.++++..-......    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~-~~~~~---~i-~~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSD-PSKPT---RI-LKLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecC-Cccce---eE-eecceEEEEEEecccC-EEEEE-cCCccEEEEchhhcccccccccc
Confidence            4578899998888 88888721 11111   11 1233499999888654 44333 4599999998654322210    


Q ss_pred             ---------Ee--cCceEEEE--EccCCCEEEEEeCCCcEEEEEccCC-----eEeeeeccCcceeeEEeccCCCeEEEE
Q 021319          106 ---------EL--SGENINIT--YKPDGTHIAVGNRDDELTILDVRKF-----KPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus       106 ---------~~--~~~~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                               ..  .......+  -.+.+...++......+.+|.....     +.......+..+..+.|.  ++.++++
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~  154 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVG  154 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEE
Confidence                     11  11111222  1223333444444558888877542     445556666777888887  5666666


Q ss_pred             cCCceEEEEeCCCCCceeeeee------------cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE--Eeeecc
Q 021319          168 TGNGTVEVLTYPSLRPLDTVVA------------HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR--TFTKLE  233 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~~~------------~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~--~~~~~~  233 (314)
                      ..++ ..++++.+......+..            ...++..+.++ ++.+|++-  |..-.+.|. .+...+  .+. ..
T Consensus       155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-W~  228 (275)
T PF00780_consen  155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-WS  228 (275)
T ss_pred             eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE-cC
Confidence            6444 55666654433222110            11123333333 34454432  333333333 332222  221 12


Q ss_pred             cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319          234 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       234 ~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~  273 (314)
                      ..+.++++  ...||+..+.++ |.|+++.+++.++.+..
T Consensus       229 ~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  229 SAPQSVAY--SSPYLIAFSSNS-IEVRSLETGELVQTIPL  265 (275)
T ss_pred             CchhEEEE--ECCEEEEECCCE-EEEEECcCCcEEEEEEC
Confidence            23445555  446888777765 99999999999888764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.00049  Score=61.67  Aligned_cols=179  Identities=11%  Similarity=0.054  Sum_probs=112.3

Q ss_pred             EEccCCCEEEEEeCCCcEEEEEccCCeEeeeec--cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceee--e---
Q 021319          115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT--V---  187 (314)
Q Consensus       115 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~---  187 (314)
                      ++...+++++.|+..|.+.+|+-...+......  ....+..+..++...++++++..|.|.++.+....+-..  +   
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~  119 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC  119 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence            355678899999999999999865443332222  122344555677888888999999999997755333211  1   


Q ss_pred             -eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc----EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          188 -VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       188 -~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                       ..|...|+|++|++++..+++|...|+|.+-.+...    ...+.+...+.+|-.++. -++..|++...  ...+.++
T Consensus       120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~-~q~~LLVStl~--r~~Lc~t  196 (726)
T KOG3621|consen  120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY-LQSYLLVSTLT--RCILCQT  196 (726)
T ss_pred             cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec-ccceehHhhhh--hhheeec
Confidence             136778999999999999999999999999888761    123444455666666665 23344433322  3455666


Q ss_pred             CCCCeEEEEec---cCc-cceeEEcCC----CCeeEEEecCCc
Q 021319          263 HTGRTVHQIPC---RAA-MNSVEWNPK----YNLLAYAGDDKN  297 (314)
Q Consensus       263 ~~~~~~~~~~~---~~~-i~~v~~~~~----~~~la~~~~d~~  297 (314)
                      ..++ ++++..   ++. -....|=|.    ...++++++=+.
T Consensus       197 E~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~  238 (726)
T KOG3621|consen  197 EAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGL  238 (726)
T ss_pred             chhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCCC
Confidence            5433 333322   221 334555554    455667777654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.65  E-value=0.00051  Score=61.53  Aligned_cols=102  Identities=16%  Similarity=0.299  Sum_probs=78.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeEE--ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee-------eeccC
Q 021319           79 ADLIATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH-------RRKFG  149 (314)
Q Consensus        79 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~  149 (314)
                      .++++-|+.-|.+.+++...+......+  ..+....+..+++..++|.|+..+.|.++.+....+..       ...++
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~  124 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK  124 (726)
T ss_pred             CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence            4688999999999999987776544333  23334457788889999999999999999876543211       12246


Q ss_pred             cceeeEEeccCCCeEEEEcCCceEEEEeCCC
Q 021319          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS  180 (314)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  180 (314)
                      ..+.++.|++++..++.|...|.+....+..
T Consensus       125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceEEEEEecccccEEeecCCCceEEEEEech
Confidence            7899999999999999999999999887765

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.61  E-value=0.023  Score=45.37  Aligned_cols=112  Identities=16%  Similarity=0.101  Sum_probs=79.0

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCccee-e
Q 021319           76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-E  154 (314)
Q Consensus        76 ~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~  154 (314)
                      ++...+++.||-.+.+.--|..+|...-+..+...+.+-++. -|.++++|...+.+.+.+.++...........++. .
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~   98 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR   98 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence            344567778888888888888888776555444444332222 47789999999999999999886655544333332 2


Q ss_pred             EEeccCCCeEEEEcCCceEEEEeCCCCCceeeee
Q 021319          155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV  188 (314)
Q Consensus       155 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  188 (314)
                      ....+++..+..++.|++.+..|.+....+....
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            3346788899999999999999988776665543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.60  E-value=0.0026  Score=59.45  Aligned_cols=141  Identities=13%  Similarity=0.159  Sum_probs=96.3

Q ss_pred             CCCEEEE-EeCCCcEEEEeCCCCceeeeEEecCceEEEEEccC-------CCEEEEEeCCCcEEEEEccCCe--Eee---
Q 021319           78 HADLIAT-ASGDKTVRLWDARSGKCSQQAELSGENINITYKPD-------GTHIAVGNRDDELTILDVRKFK--PIH---  144 (314)
Q Consensus        78 ~~~~l~s-~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~--~~~---  144 (314)
                      +.++|+. ......|.-.|+..|+++.....+...--..+.|+       ....++|-.+..+..||+|...  .+.   
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            3445443 34568888999999999988877655423344443       3456788889999999998643  221   


Q ss_pred             -eeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319          145 -RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (314)
Q Consensus       145 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~  220 (314)
                       .+.......+++-. ..-++++|+.+|.|++|+-...+....+.+-+.+|..|+++.||++++..+ +..+.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt-~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATT-EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEec-CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence             12222333444433 344788899999999999655444455667788999999999999977544 556777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.56  E-value=0.049  Score=47.98  Aligned_cols=190  Identities=13%  Similarity=0.132  Sum_probs=100.2

Q ss_pred             cEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC---cceeeE-----EeccC
Q 021319           90 TVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEI-----AWNMT  160 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~-----~~~~~  160 (314)
                      .|+||+.. |+.+...... +.++.+.|+.+ ..|++-..||.+.++|+.... .......   ..+...     .+...
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            47777764 4444433332 56788999875 455566789999999986333 1111000   111111     11122


Q ss_pred             CCeEEEEcCCceEEEEeCCCCC-c---eeeeee-----cccc-eEE-EEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          161 GEMFFLTTGNGTVEVLTYPSLR-P---LDTVVA-----HTAG-CYC-IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~-~---~~~~~~-----~~~~-i~~-i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                      |  +++-..++.+....--... .   +.....     +... ... ..++.+....+....++.+.+.+-.....   +
T Consensus       139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence            3  3444455555544321110 0   111111     1000 011 23444555555555555566444332211   1


Q ss_pred             eecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc--CccceeEEcCCCCe
Q 021319          230 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--AAMNSVEWNPKYNL  288 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~--~~i~~v~~~~~~~~  288 (314)
                      . ...++..++.||+++++|.-..+|.+.+.+..-.+.+.++...  .....+.|.-+...
T Consensus       214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav  273 (410)
T PF04841_consen  214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV  273 (410)
T ss_pred             c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence            1 2357999999999999999999999999887666666555433  45556666654433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.51  E-value=0.0036  Score=58.58  Aligned_cols=140  Identities=18%  Similarity=0.227  Sum_probs=91.3

Q ss_pred             CCEEEEE-eCCCcEEEEEccCCeEeeeeccCcceeeEEeccC-------CCeEEEEcCCceEEEEeCCCCC-ceeeeee-
Q 021319          120 GTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT-------GEMFFLTTGNGTVEVLTYPSLR-PLDTVVA-  189 (314)
Q Consensus       120 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~-  189 (314)
                      .+.|+.. .....+.-+|+..++.+...+....+....+.|+       ....++|..+..+..||.+-.. ++..-.. 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444443 2456788889999888877665543323333332       4567888888888888875432 2211112 


Q ss_pred             ---cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319          190 ---HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       190 ---~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~  261 (314)
                         ......|++-+.+| ++|+|+.+|.||+||-........+++...||..|+.+.||++|+...... +.+.+
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty-LlLi~  645 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTY-LLLID  645 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecce-EEEEE
Confidence               23346788877766 789999999999999533222334567788999999999999988555444 44444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.45  E-value=0.07  Score=47.05  Aligned_cols=187  Identities=13%  Similarity=0.194  Sum_probs=93.4

Q ss_pred             cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC-----ceEEE---
Q 021319           43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-----ENINI---  114 (314)
Q Consensus        43 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-----~~~~~---  114 (314)
                      .|+||+..-   ..+..+....  +.+..+.|..+  +.|+.-..||.++++|+. |..  ++.+..     .+...   
T Consensus        62 ~I~iys~sG---~ll~~i~w~~--~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~  131 (410)
T PF04841_consen   62 SIQIYSSSG---KLLSSIPWDS--GRIVGMGWTDD--EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIF  131 (410)
T ss_pred             EEEEECCCC---CEeEEEEECC--CCEEEEEECCC--CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccc
Confidence            477776542   2334444543  78999999864  456677899999999986 333  211111     11111   


Q ss_pred             --EEccCCCEEEEEeCCCcEEEEE-ccCCeEeeee-ccCccee---------e-EEeccCCCeEEEEcCCceEEEEeCCC
Q 021319          115 --TYKPDGTHIAVGNRDDELTILD-VRKFKPIHRR-KFGYEVN---------E-IAWNMTGEMFFLTTGNGTVEVLTYPS  180 (314)
Q Consensus       115 --~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~~~-~~~~~~~---------~-~~~~~~~~~~~~~~~~g~~~~~~~~~  180 (314)
                        .+...|  +++-..++.+.+.. .......... +......         . ..+..+....+....++.+...+...
T Consensus       132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS  209 (410)
T ss_pred             ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence              122233  22223344443332 2211000000 1000000         0 12233334444444445555444322


Q ss_pred             CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec-ccCeEEEEEccCC
Q 021319          181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-EWPVRTISFSHTG  245 (314)
Q Consensus       181 ~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~sp~~  245 (314)
                      .+.   + ...+++..|++||+++++|.-..+|.+.+...+-.+.+.++... ......+.|.-++
T Consensus       210 ~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  210 FKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             ccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            211   1 12357899999999999999999999988875433333333222 2345566664443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.43  E-value=0.06  Score=45.83  Aligned_cols=168  Identities=14%  Similarity=0.130  Sum_probs=97.9

Q ss_pred             CcEEEEeCCCC-----ce--eeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe-EeeeeccCcceeeEEeccC
Q 021319           89 KTVRLWDARSG-----KC--SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMT  160 (314)
Q Consensus        89 ~~v~iwd~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~  160 (314)
                      |.|.++++...     +.  +......+.+.+++-. ++. |+++ .+..+.++++...+ .........+.........
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            88999998874     22  2334556666666544 444 4444 34789999998777 4444333333333344445


Q ss_pred             CCeEEEEcCCceEEEEeCCC-CCceeeeee--cccceEEEEECCCCCEEEEeeCCCeEEEeeCCC-------c----EEE
Q 021319          161 GEMFFLTTGNGTVEVLTYPS-LRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-------M----LCV  226 (314)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~--~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~-------~----~~~  226 (314)
                      ++.++++.....+.++.+.. .+.+..+..  ....++++.+-++++.++.++.+|.+.++....       +    ...
T Consensus       139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~  218 (321)
T PF03178_consen  139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERI  218 (321)
T ss_dssp             TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEE
T ss_pred             ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeE
Confidence            77899998888888876543 222333322  234578888876667999999999999998752       1    122


Q ss_pred             EEeeecccCeEEE---EEccC--C------cEEEEecCCceEEEE
Q 021319          227 RTFTKLEWPVRTI---SFSHT--G------DYIASASEDLFIDIS  260 (314)
Q Consensus       227 ~~~~~~~~~v~~~---~~sp~--~------~~l~s~s~d~~v~v~  260 (314)
                      ..+ .....|.++   ++.|.  +      ..++.++.+|.|.+.
T Consensus       219 ~~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  219 SSF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            222 233456666   55562  2      247778888888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.43  E-value=0.018  Score=39.81  Aligned_cols=101  Identities=17%  Similarity=0.255  Sum_probs=66.3

Q ss_pred             EEEEEEc---CCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee
Q 021319           69 VDQLCWD---PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR  145 (314)
Q Consensus        69 v~~l~~~---~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  145 (314)
                      |.+|++.   .++.+.|+.|+.|..||+|+-  ...+........+..++.... ..++-+..+|+|-+|+-.  +.+.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence            4455543   334467889999999999974  466666666777777765555 668889999999999853  34455


Q ss_pred             eccCcceeeEEe-ccCC---CeEEEEcCCceEE
Q 021319          146 RKFGYEVNEIAW-NMTG---EMFFLTTGNGTVE  174 (314)
Q Consensus       146 ~~~~~~~~~~~~-~~~~---~~~~~~~~~g~~~  174 (314)
                      .+....+.++.+ ..++   ..++++-.+|.+.
T Consensus        77 iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            555555555443 2222   2556666666653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.40  E-value=0.084  Score=46.73  Aligned_cols=242  Identities=15%  Similarity=0.161  Sum_probs=121.6

Q ss_pred             cEEEEEECCCCCEEEEe-eCCC----cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC--------
Q 021319           22 KVHSVAWNCTGTKLASG-SVDQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--------   88 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~-~~D~----~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D--------   88 (314)
                      .+....+||+|+++|-+ +..|    .+++.|++++   ....-.+.....  ..+.|.+++..++.+.-.+        
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCC
Confidence            45577899999987754 3334    5999999764   222222222111  2389998765555554333        


Q ss_pred             --CcEEEEeCCCCcee--eeEEe--cCc-eEEEEEccCCCEEEEEeCC----CcEEEEEccCC-----eEeeeeccCcce
Q 021319           89 --KTVRLWDARSGKCS--QQAEL--SGE-NINITYKPDGTHIAVGNRD----DELTILDVRKF-----KPIHRRKFGYEV  152 (314)
Q Consensus        89 --~~v~iwd~~~~~~~--~~~~~--~~~-~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~-----~~~~~~~~~~~~  152 (314)
                        ..|..|.+.+....  ..+..  ... .+.+..++|++++++....    ..+.+.|+...     .+..-......+
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~  279 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV  279 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence              23677787665432  12222  222 4578889999998865432    34677787653     222111111112


Q ss_pred             eeEEeccCCCeEEEEcC---CceEEEEeCCCCCc---eeeeeecccceEEEEECCCCCEEEEe-eCCC--eEEEeeCCCc
Q 021319          153 NEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFAVG-SADS--LVSLWDISEM  223 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~t~-~~dg--~i~vwd~~~~  223 (314)
                      ....-+..+.+++....   .+.+...++.....   ...+..+...+.-..+...+.+|+.. -.++  .|+++++..+
T Consensus       280 ~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~  359 (414)
T PF02897_consen  280 EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG  359 (414)
T ss_dssp             EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred             EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence            22222234444544432   35666666655442   12344455533333333345555444 4444  6899998834


Q ss_pred             EEEEEeeec-ccCeEEEEEccCCcEE-EEecC---CceEEEEECCCCCeE
Q 021319          224 LCVRTFTKL-EWPVRTISFSHTGDYI-ASASE---DLFIDISNVHTGRTV  268 (314)
Q Consensus       224 ~~~~~~~~~-~~~v~~~~~sp~~~~l-~s~s~---d~~v~v~~~~~~~~~  268 (314)
                      .....+... ...|..+...++++.+ ++-+.   =..+..+|+.+++..
T Consensus       360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            444333332 2335556555655433 33322   267788888877643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.31  E-value=5.5e-05  Score=66.84  Aligned_cols=184  Identities=19%  Similarity=0.259  Sum_probs=117.3

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEe-ee--eccCcceeeEEeccCCC-eEEEEc----CCceEEEEeCCCC--Cceee--
Q 021319          119 DGTHIAVGNRDDELTILDVRKFKPI-HR--RKFGYEVNEIAWNMTGE-MFFLTT----GNGTVEVLTYPSL--RPLDT--  186 (314)
Q Consensus       119 ~~~~l~~~~~d~~i~i~d~~~~~~~-~~--~~~~~~~~~~~~~~~~~-~~~~~~----~~g~~~~~~~~~~--~~~~~--  186 (314)
                      +...+++|..+|.|.+-.++...-- +.  -......++++|++-+. .++++.    .+..+.+|+....  .|...  
T Consensus        69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~  148 (783)
T KOG1008|consen   69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL  148 (783)
T ss_pred             chhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc
Confidence            3457788888899888877654322 11  11224567888887653 444443    3567889998655  33222  


Q ss_pred             eee-cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEcc-CCcEEEEecCCceEEEEEC-
Q 021319          187 VVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSH-TGDYIASASEDLFIDISNV-  262 (314)
Q Consensus       187 ~~~-~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp-~~~~l~s~s~d~~v~v~~~-  262 (314)
                      +.+ ......+++|..+.+.+.+|.....++++|++.... ...+  -...+..+..+| ...|+++-+ |+.|.+||. 
T Consensus       149 fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~  225 (783)
T KOG1008|consen  149 FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTY  225 (783)
T ss_pred             cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccch
Confidence            111 334456888888888899999999999999974321 1111  112356677788 778888766 999999994 


Q ss_pred             CCCC-eEEEEec-cC----ccceeEEcCCC-CeeEEEecCCcccccccceEEecccc
Q 021319          263 HTGR-TVHQIPC-RA----AMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       263 ~~~~-~~~~~~~-~~----~i~~v~~~~~~-~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      .+-+ ++..+.+ ..    .+..++|.|.. .++|+...|       .++++.|++.
T Consensus       226 rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd-------S~tIrlydi~  275 (783)
T KOG1008|consen  226 RNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD-------SITIRLYDIC  275 (783)
T ss_pred             hhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC-------cceEEEeccc
Confidence            3322 2222222 22    38899999964 456776666       4799999874

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.012  Score=51.65  Aligned_cols=138  Identities=12%  Similarity=0.157  Sum_probs=94.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCC-------EEEEEeCCCcEEEEEccCCeE--e-----eee
Q 021319           81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT-------HIAVGNRDDELTILDVRKFKP--I-----HRR  146 (314)
Q Consensus        81 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~~~--~-----~~~  146 (314)
                      ++.++.....++--|+..|+++....++..+.-..+.|+.+       .-++|-.+..+.-||+|-...  +     +.+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            45566667778888999999988888777655555666543       346777889999999984221  1     111


Q ss_pred             ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319          147 KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (314)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~  220 (314)
                      ..+..-.|.+ ....-++++++.+|.|++|+--..+.-..+++.+.+|..+..+.+|++++.. .+..+.+.++
T Consensus       428 ~~k~nFsc~a-TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t  499 (644)
T KOG2395|consen  428 STKNNFSCFA-TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDT  499 (644)
T ss_pred             ccccccceee-ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEE
Confidence            1111222222 2234578889999999999985555555677888999999999999987644 3666777765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.29  E-value=0.093  Score=44.99  Aligned_cols=262  Identities=12%  Similarity=0.093  Sum_probs=113.9

Q ss_pred             EECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 021319           27 AWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ  104 (314)
Q Consensus        27 ~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~  104 (314)
                      +|.+||+. |.++..||.-.+|-++... ..+.  .|.... .......++|... .++-.....+|+--|+.+.+....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t-~~i~--QLTdg~g~~~~g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLAT-GEIT--QLTDGPGDNTFGGFLSPDDR-ALYYVKNGRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT--EEE--E---SS-B-TTT-EE-TTSS-EEEEEETTTEEEEEETTT--EEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEccc-CEEE--ECccCCCCCccceEEecCCC-eEEEEECCCeEEEEECCcCcEEEE
Confidence            67889965 5555567777776554432 2222  233222 2222445567654 443344556888889988875555


Q ss_pred             EEecCceEE-EE--EccCCCEEEEEeCCC----------------------cEEEEEccCCeEeeeeccCcceeeEEecc
Q 021319          105 AELSGENIN-IT--YKPDGTHIAVGNRDD----------------------ELTILDVRKFKPIHRRKFGYEVNEIAWNM  159 (314)
Q Consensus       105 ~~~~~~~~~-~~--~~~~~~~l~~~~~d~----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  159 (314)
                      ......-.. ..  .+.++..++-.....                      .|...|+++.+.........-+..+.++|
T Consensus       118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP  197 (386)
T PF14583_consen  118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP  197 (386)
T ss_dssp             EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred             EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence            544443331 23  345566554322111                      22333444433322222333456677888


Q ss_pred             CCCeEEEEcCC-------ceEEEEeCCCCCceeeeeec--ccceEEEEECCCCCEEEE-----eeCCCeEEEeeCCCcEE
Q 021319          160 TGEMFFLTTGN-------GTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDPMGRYFAV-----GSADSLVSLWDISEMLC  225 (314)
Q Consensus       160 ~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~t-----~~~dg~i~vwd~~~~~~  225 (314)
                      ....++.-+-.       .++...+..... ...+..+  ...+..=-|.|||..+.-     ++.+..|.-+|+.++..
T Consensus       198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             TEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred             CCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence            77665554322       234444433221 1111111  112233348899876542     22244677788887755


Q ss_pred             EEEeeecccCeEEEEEccCCcEEEEecCCc----------------eEEEEECCCCCeEEEEeccC-----------ccc
Q 021319          226 VRTFTKLEWPVRTISFSHTGDYIASASEDL----------------FIDISNVHTGRTVHQIPCRA-----------AMN  278 (314)
Q Consensus       226 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~----------------~v~v~~~~~~~~~~~~~~~~-----------~i~  278 (314)
                      .... ..+ +....--++||++++-=+.|.                .+.++++.+++...-..|..           .=-
T Consensus       277 ~~~~-~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP  354 (386)
T PF14583_consen  277 RRLM-EMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP  354 (386)
T ss_dssp             EEEE-EE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred             eEEE-eCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence            3322 222 344566679999887444432                56677887765432222211           113


Q ss_pred             eeEEcCCCCeeEEEecC
Q 021319          279 SVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       279 ~v~~~~~~~~la~~~~d  295 (314)
                      -+.|+||++.+++.|+-
T Consensus       355 hp~FSPDgk~VlF~Sd~  371 (386)
T PF14583_consen  355 HPSFSPDGKWVLFRSDM  371 (386)
T ss_dssp             --EE-TTSSEEEEEE-T
T ss_pred             CCccCCCCCEEEEECCC
Confidence            68999999999988864

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.29  E-value=0.069  Score=43.33  Aligned_cols=187  Identities=17%  Similarity=0.182  Sum_probs=116.9

Q ss_pred             eeeEEecCceE--EEEEccCCCEEEEEeCCC--cEEEEEccCCeEeeeeccCcce--eeEEeccCCCeEEEEcCCceEEE
Q 021319          102 SQQAELSGENI--NITYKPDGTHIAVGNRDD--ELTILDVRKFKPIHRRKFGYEV--NEIAWNMTGEMFFLTTGNGTVEV  175 (314)
Q Consensus       102 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~  175 (314)
                      +...++.....  .+.|..++.++.+.+.-|  .++.+|+.+.+.......+...  ..++.. .+..+...=.++...+
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~  114 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFV  114 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEE
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEE
Confidence            34444443333  366767888888877766  5888999998877665554332  222222 3445556667888899


Q ss_pred             EeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc--c---CeEEEEEccCCcEEEE
Q 021319          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE--W---PVRTISFSHTGDYIAS  250 (314)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--~---~v~~~~~sp~~~~l~s  250 (314)
                      |+..+.+.+.++. ..++-+.++  .+++.|+..+....+.++|..+.+..+++....  .   .++.+.|- +|...|-
T Consensus       115 yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN  190 (264)
T PF05096_consen  115 YDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN  190 (264)
T ss_dssp             EETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred             EccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence            9998887776664 234556666  457777777777889999998877766654332  1   35566664 6887777


Q ss_pred             ecCCceEEEEECCCCCeEEEEec----------------cCccceeEEcCCCCeeEEEe
Q 021319          251 ASEDLFIDISNVHTGRTVHQIPC----------------RAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~~~----------------~~~i~~v~~~~~~~~la~~~  293 (314)
                      .=....|...|..+|+....+..                ..-.|.+||.|....|...|
T Consensus       191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            77777899999999999887642                12368999998765544444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.23  E-value=0.00073  Score=52.54  Aligned_cols=105  Identities=14%  Similarity=0.126  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCCceEEEEeCCCCCcee-eeeecccceE-EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc-cCe
Q 021319          160 TGEMFFLTTGNGTVEVLTYPSLRPLD-TVVAHTAGCY-CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPV  236 (314)
Q Consensus       160 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~-~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v  236 (314)
                      ...-+++++.+|.+.+|.+...-... .+..-...+- -+..-.++.+..+++.||.|+.|++...+.+-....|. .+.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            34667889999999999875322111 1111112222 22333345588899999999999998887766555555 445


Q ss_pred             EEEEEccCCcEEEEe--cCCceEEEEECCC
Q 021319          237 RTISFSHTGDYIASA--SEDLFIDISNVHT  264 (314)
Q Consensus       237 ~~~~~sp~~~~l~s~--s~d~~v~v~~~~~  264 (314)
                      .....+..+++++.+  |.|..++.|++..
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhh
Confidence            555555556666666  6666666666643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.20  E-value=0.17  Score=46.18  Aligned_cols=238  Identities=15%  Similarity=0.107  Sum_probs=129.9

Q ss_pred             CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC--CEEE-EEEcCCCCCEEEEEe------CCCcEEEEeCCCCceee
Q 021319           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVDQ-LCWDPKHADLIATAS------GDKTVRLWDARSGKCSQ  103 (314)
Q Consensus        33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~--~v~~-l~~~~~~~~~l~s~~------~D~~v~iwd~~~~~~~~  103 (314)
                      ..++.++.|+.|.-.|.+++.  .+....+..+..  .+.+ -..  .++ .++.+.      .++.|.-+|..+|+.+-
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk--~~W~~~~~~~~~~~~~tssP~v--~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW  195 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGK--VVWSKKNGDYKAGYTITAAPLV--VKG-KVITGISGGEFGVRGYVTAYDAKTGKLVW  195 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCC--EEeecccccccccccccCCcEE--ECC-EEEEeecccccCCCcEEEEEECCCCceeE
Confidence            456667778888877776543  222222211111  1111 011  122 344443      26889999999987654


Q ss_pred             eEEecCc--------------------------------e-EEEEEccCCCEEEEEeCC-----C-----------cEEE
Q 021319          104 QAELSGE--------------------------------N-INITYKPDGTHIAVGNRD-----D-----------ELTI  134 (314)
Q Consensus       104 ~~~~~~~--------------------------------~-~~~~~~~~~~~l~~~~~d-----~-----------~i~i  134 (314)
                      ....-..                                . ..+++.|+..++..+...     +           +|.-
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA  275 (527)
T TIGR03075       196 RRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA  275 (527)
T ss_pred             eccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence            3221100                                0 124677777777777632     2           5777


Q ss_pred             EEccCCeEeeeeccC----------cceeeEEeccCCC---eEEEEcCCceEEEEeCCCCCceee--------e----ee
Q 021319          135 LDVRKFKPIHRRKFG----------YEVNEIAWNMTGE---MFFLTTGNGTVEVLTYPSLRPLDT--------V----VA  189 (314)
Q Consensus       135 ~d~~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~--------~----~~  189 (314)
                      .|+++.+.+..++..          .+..-+....++.   .++.+..+|.+.++|..+.+++..        .    ..
T Consensus       276 ld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~  355 (527)
T TIGR03075       276 RDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDL  355 (527)
T ss_pred             EccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCC
Confidence            888888776655431          1111122223554   667788889999998776655311        0    00


Q ss_pred             cc---------------------------cc--eEEEEECCCCCEEEEeeCC----------------------------
Q 021319          190 HT---------------------------AG--CYCIAIDPMGRYFAVGSAD----------------------------  212 (314)
Q Consensus       190 ~~---------------------------~~--i~~i~~~~~~~~l~t~~~d----------------------------  212 (314)
                      ..                           +.  -..++++|+..++.....+                            
T Consensus       356 ~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~  435 (527)
T TIGR03075       356 KTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPP  435 (527)
T ss_pred             CCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCC
Confidence            00                           00  0125677766655544333                            


Q ss_pred             -----CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCc
Q 021319          213 -----SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA  276 (314)
Q Consensus       213 -----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~  276 (314)
                           |.+.-+|+.+++.+-+.+...-..... ..-.+.+++.++.||.++.+|..+|+.+.++.....
T Consensus       436 ~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~  503 (527)
T TIGR03075       436 PDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSG  503 (527)
T ss_pred             CCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCC
Confidence                 356677777776654433211111111 112455777788999999999999999998765443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.022  Score=49.95  Aligned_cols=143  Identities=18%  Similarity=0.252  Sum_probs=94.9

Q ss_pred             EccCCCEEE-EEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCC-------eEEEEcCCceEEEEeCCCCC--cee
Q 021319          116 YKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE-------MFFLTTGNGTVEVLTYPSLR--PLD  185 (314)
Q Consensus       116 ~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~--~~~  185 (314)
                      +..+.++|+ .+.....+.-.|++.++.+...+....+..+.+.|+.+       ..++|..+..+.-|+.+-..  .+.
T Consensus       341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             hccccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            334445544 45555678888999988888777766677777776643       45677788888888764211  222


Q ss_pred             eeeecc----cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE-EEeeecccCeEEEEEccCCcEEEEecCCceEEEE
Q 021319          186 TVVAHT----AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV-RTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS  260 (314)
Q Consensus       186 ~~~~~~----~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~  260 (314)
                      ..++|.    ..-.|.+-..+| ++|+|+.+|-||+||- .+... ..+++...+|..|.-+.+|++++...... +.+.
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty-LlLi  497 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY-LLLI  497 (644)
T ss_pred             eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccE-EEEE
Confidence            223332    234566655555 7899999999999997 44433 35677888999999999999987544443 4343


Q ss_pred             E
Q 021319          261 N  261 (314)
Q Consensus       261 ~  261 (314)
                      +
T Consensus       498 ~  498 (644)
T KOG2395|consen  498 D  498 (644)
T ss_pred             E
Confidence            3

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.16  E-value=0.0075  Score=55.38  Aligned_cols=133  Identities=11%  Similarity=0.134  Sum_probs=75.8

Q ss_pred             CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee------CCC--eEEEeeCCCcEEEEEeeecccCeEEEEE
Q 021319          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS------ADS--LVSLWDISEMLCVRTFTKLEWPVRTISF  241 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~  241 (314)
                      +|.+....-....++....+....+...+++|+|+.+|..-      .|.  .+.+++.....  +.+.... ....-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g~-~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEGH-SLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecCC-CCCCceE
Confidence            66666555443334433333334577889999999876544      243  45555543222  2221112 3566789


Q ss_pred             ccCCcEEEEecCC-ceEEEE-----------ECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccc-----cccc
Q 021319          242 SHTGDYIASASED-LFIDIS-----------NVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ-----ADEG  304 (314)
Q Consensus       242 sp~~~~l~s~s~d-~~v~v~-----------~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~-----~~~~  304 (314)
                      +|+|+.|++.+.. ..+++.           ++..+....  ...+.|.+++|||||..+|.... +..|.     .++|
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G  481 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDG  481 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCC
Confidence            9999988877533 223333           333332222  22457999999999999887763 34443     2455


Q ss_pred             eEEe
Q 021319          305 VFRI  308 (314)
Q Consensus       305 ~~~~  308 (314)
                      +.++
T Consensus       482 ~~~l  485 (591)
T PRK13616        482 QYAL  485 (591)
T ss_pred             ceee
Confidence            5544

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.11  E-value=0.045  Score=37.93  Aligned_cols=92  Identities=15%  Similarity=0.108  Sum_probs=63.5

Q ss_pred             ECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCcc
Q 021319          199 IDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM  277 (314)
Q Consensus       199 ~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i  277 (314)
                      |+.+| +.|++|+.|..||+|+-.  ..+.++... ..|.+++-.+. ..++.|.++|+|-+|+-  ...+..++.+..+
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~   83 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKNQV   83 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCCCe
Confidence            44444 468999999999999854  445555433 35676765554 67999999999999975  3456666666677


Q ss_pred             ceeEEcCCC----CeeEEEecCC
Q 021319          278 NSVEWNPKY----NLLAYAGDDK  296 (314)
Q Consensus       278 ~~v~~~~~~----~~la~~~~d~  296 (314)
                      +++++..-.    +-|++|-.++
T Consensus        84 ~~~~~~D~~gdG~~eLI~GwsnG  106 (111)
T PF14783_consen   84 TSMAFYDINGDGVPELIVGWSNG  106 (111)
T ss_pred             EEEEEEcCCCCCceEEEEEecCC
Confidence            877776422    3567776664

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.04  E-value=0.0016  Score=50.74  Aligned_cols=141  Identities=16%  Similarity=0.222  Sum_probs=86.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEec
Q 021319           81 LIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWN  158 (314)
Q Consensus        81 ~l~s~~~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~  158 (314)
                      ++..-+.|+.|+-++++..+.....+ +....  .....-+..+++|+.++.+.+|............ .......+.+.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            34456778888888876544222111 11111  2222345679999999999999876433222211 11122222222


Q ss_pred             --cCCCeEEEEcCCceEEEEeCCCCCceeeeeecc-cceEEEEECCCCCEEEEe--eCCCeEEEeeCCCc
Q 021319          159 --MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVG--SADSLVSLWDISEM  223 (314)
Q Consensus       159 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~t~--~~dg~i~vwd~~~~  223 (314)
                        ..+.+..++..+|.++.+.....+.+.....|+ .+......+..++.++.+  +.|..++.|++...
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence              233477788999999999998877766666666 455566666667777777  77888888887654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.03  E-value=0.16  Score=42.77  Aligned_cols=214  Identities=11%  Similarity=0.016  Sum_probs=116.4

Q ss_pred             EECCCCCEEEEe-eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE
Q 021319           27 AWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (314)
Q Consensus        27 ~~s~~g~~l~s~-~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~  105 (314)
                      .|.++...|+=+ -..+.|.-|+.+..   ......   +...+.++..-..+ ..|+++.  ..+.+++..++......
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g---~~~~~~---~p~~~~~~~~~d~~-g~Lv~~~--~g~~~~~~~~~~~~t~~  101 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETG---KKRVFP---SPGGFSSGALIDAG-GRLIACE--HGVRLLDPDTGGKITLL  101 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcC---ceEEEE---CCCCcccceeecCC-CeEEEEc--cccEEEeccCCceeEEe
Confidence            466777654444 35677777776532   122222   23333443333233 3444443  35566776555542222


Q ss_pred             -Eec-C----ceEEEEEccCCCEEEEEeC-----------CCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEEE
Q 021319          106 -ELS-G----ENINITYKPDGTHIAVGNR-----------DDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus       106 -~~~-~----~~~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  167 (314)
                       ... .    ........|+|.+.+....           -+.+..+|. ....+..... -...+.++|+|+++.++++
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a  180 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA  180 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence             111 1    1123556778776665433           112333343 2222222211 2346789999999877776


Q ss_pred             cC-CceEEEEeCCC--CC---c--eeeeeecccceEEEEECCCCCEEEEeeCCC-eEEEeeCCCcEEEEEeeecccCeEE
Q 021319          168 TG-NGTVEVLTYPS--LR---P--LDTVVAHTAGCYCIAIDPMGRYFAVGSADS-LVSLWDISEMLCVRTFTKLEWPVRT  238 (314)
Q Consensus       168 ~~-~g~~~~~~~~~--~~---~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~  238 (314)
                      .. .+.+..+++..  ..   .  ......+.+..-.++++.+|.+.+++-.+| .|..|+.. ++.+..+.-....+.+
T Consensus       181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~  259 (307)
T COG3386         181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN  259 (307)
T ss_pred             eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence            54 58888887752  11   1  111112345566788888998876554444 89999987 8878777666566788


Q ss_pred             EEEc-cCCcEEEEe
Q 021319          239 ISFS-HTGDYIASA  251 (314)
Q Consensus       239 ~~~s-p~~~~l~s~  251 (314)
                      ++|- |+.+.|...
T Consensus       260 ~~FgG~~~~~L~iT  273 (307)
T COG3386         260 PAFGGPDLNTLYIT  273 (307)
T ss_pred             ceEeCCCcCEEEEE
Confidence            8885 554544433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.95  E-value=0.078  Score=46.34  Aligned_cols=227  Identities=8%  Similarity=0.077  Sum_probs=103.5

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeE-Eeec------CCCCEEEEEEc---CCC-C---CEEE
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELRG------HADSVDQLCWD---PKH-A---DLIA   83 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~-~~~~------h~~~v~~l~~~---~~~-~---~~l~   83 (314)
                      ..+++|++++.| |=-+++.|..+|.+.|.|+..   ..+... .+..      ....|.++.|.   ..+ +   -+++
T Consensus        84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RG---PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRG---PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             --S-SEEEEEE--BTSEEEEEETTSEEEEEETTT---TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCC---CeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            347899999997 444888888999999999842   222221 2222      23356677664   111 1   2566


Q ss_pred             EEeCCCcEEEEeCCC-CceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCC
Q 021319           84 TASGDKTVRLWDARS-GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (314)
Q Consensus        84 s~~~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      .|...|.+.+|.+.- ..-.....+    .......+++.+       .|..+|..+..+......  ....+.-....+
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~----~~~~~~~~~~i~-------~I~~i~~~~G~~a~At~~--~~~~l~~g~~i~  226 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQF----AGATTNHDSPIL-------SIIPINADTGESALATIS--AMQGLSKGISIP  226 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEE----EEEE--SS-----------EEEEEETTT--B-B-BHH--HHHGGGGT----
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEE----eeccccCCCceE-------EEEEEECCCCCcccCchh--HhhccccCCCcC
Confidence            777778888876531 110000000    000011111111       122223222221110000  000000001123


Q ss_pred             eEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEE-----CCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc----
Q 021319          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI-----DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE----  233 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~-----~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~----  233 (314)
                      .+++......++++.....+..............+.+     ...+..|++-..+|.|++|.+...+.+..+.-..    
T Consensus       227 g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~  306 (395)
T PF08596_consen  227 GYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS  306 (395)
T ss_dssp             EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred             cEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence            4566677888999988776654433322122223333     2356678888999999999999888776665422    


Q ss_pred             cCeEEEEEccCCcEEEEecCCc--eEEEEE
Q 021319          234 WPVRTISFSHTGDYIASASEDL--FIDISN  261 (314)
Q Consensus       234 ~~v~~~~~sp~~~~l~s~s~d~--~v~v~~  261 (314)
                      ..+...+++++|+.++-.|...  .+.+|.
T Consensus       307 ~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~  336 (395)
T PF08596_consen  307 RRLSSSSISRNGDIFYWTGPSEIQLFSVWG  336 (395)
T ss_dssp             HHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred             ccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence            1244567899999887666553  344443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.93  E-value=0.0081  Score=51.88  Aligned_cols=95  Identities=21%  Similarity=0.309  Sum_probs=62.6

Q ss_pred             CCCCCEEEEe---------eCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE
Q 021319          200 DPMGRYFAVG---------SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ  270 (314)
Q Consensus       200 ~~~~~~l~t~---------~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~  270 (314)
                      |||+++++..         +..+.+.+||+.+++....... ...+....|||+|+.+|-.. ++.|.+.+..++.. ..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~-~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE-TQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE-EE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe-EE
Confidence            4666665552         2345689999998765443322 55688899999999999775 46799998877733 33


Q ss_pred             EeccC-------------------ccceeEEcCCCCeeEEEecCCc
Q 021319          271 IPCRA-------------------AMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       271 ~~~~~-------------------~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      +...+                   .-.++-|||++..||+.--|..
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~  123 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER  123 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence            32211                   2358899999999999886643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.87  E-value=0.22  Score=41.77  Aligned_cols=105  Identities=22%  Similarity=0.312  Sum_probs=61.4

Q ss_pred             ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE-CCCCCeEE
Q 021319          191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN-VHTGRTVH  269 (314)
Q Consensus       191 ~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~-~~~~~~~~  269 (314)
                      .+.+..+.-+++|++++++.......-||.-...-...-......+.++.|+|++...+.+ ..|.++.-+ ...++...
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            4567888889999999999877788899865322222222345689999999998877755 888898888 22323222


Q ss_pred             E--Eec---cCccceeEEcCCCCeeEEEecCC
Q 021319          270 Q--IPC---RAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       270 ~--~~~---~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      +  .+.   .-.+..++|.|+....|.|+...
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~  254 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT  254 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence            2  111   22478999999888888777543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.82  E-value=0.0045  Score=35.77  Aligned_cols=33  Identities=18%  Similarity=0.357  Sum_probs=29.0

Q ss_pred             ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319          191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (314)
Q Consensus       191 ~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~  224 (314)
                      ...|.+++|+|...++|.+..+|.|.+|.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            345889999999999999999999999998 443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.77  E-value=0.22  Score=40.46  Aligned_cols=178  Identities=13%  Similarity=0.096  Sum_probs=114.4

Q ss_pred             EEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCceeeeEEecCceEE--EEEccCCCEEEEEeCCCcEEEEEccCCeEee
Q 021319           69 VDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENIN--ITYKPDGTHIAVGNRDDELTILDVRKFKPIH  144 (314)
Q Consensus        69 v~~l~~~~~~~~~l~s~~~D~--~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  144 (314)
                      ...+.+..+ +.++-|.+.-|  .|+.+|+.+++......+......  ++.. +++.....=.++...+||..+.+++.
T Consensus        47 TQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence            456777444 35666776654  889999999998877776655442  4433 34555566678889999999999888


Q ss_pred             eeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeec--cc---ceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319          145 RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH--TA---GCYCIAIDPMGRYFAVGSADSLVSLWD  219 (314)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~---~i~~i~~~~~~~~l~t~~~dg~i~vwd  219 (314)
                      +.....+-..+.  .++..++.+.+..+++.++-.+.+....+...  ..   .++.+-+- +|...|--=....|...|
T Consensus       125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id  201 (264)
T PF05096_consen  125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID  201 (264)
T ss_dssp             EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             EEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence            776655555555  67888999999999999998777666555432  11   24555554 566666655666788888


Q ss_pred             CCCcEEEEEeee---------------cccCeEEEEEccCCcE-EEEe
Q 021319          220 ISEMLCVRTFTK---------------LEWPVRTISFSHTGDY-IASA  251 (314)
Q Consensus       220 ~~~~~~~~~~~~---------------~~~~v~~~~~sp~~~~-l~s~  251 (314)
                      ..+++.+..+.-               ...-.+.||+.|..+. ++||
T Consensus       202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            888887765421               0234678999987654 4454

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.75  E-value=0.0051  Score=35.52  Aligned_cols=35  Identities=26%  Similarity=0.187  Sum_probs=29.9

Q ss_pred             cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCe
Q 021319          232 LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  267 (314)
Q Consensus       232 ~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~  267 (314)
                      ...+|..++|+|..++||.|+.||.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3456899999999999999999999999988 4443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.72  E-value=0.46  Score=43.46  Aligned_cols=190  Identities=12%  Similarity=0.079  Sum_probs=100.7

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC--CE-------EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SV-------DQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~--~v-------~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      +..+..++.++.|.-.|.++...  +..........  .+       ..+++.   +..++.++.|+.+.-.|..+|+.+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~--lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKE--LWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCce--eeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEE
Confidence            44666677778888777765432  22211111100  00       112222   235667888999999999999876


Q ss_pred             eeEEecCce--EEEEEcc--CCCEEEEEeC------CCcEEEEEccCCeEeeeeccCcc---------------------
Q 021319          103 QQAELSGEN--INITYKP--DGTHIAVGNR------DDELTILDVRKFKPIHRRKFGYE---------------------  151 (314)
Q Consensus       103 ~~~~~~~~~--~~~~~~~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~---------------------  151 (314)
                      -........  ..+.-.|  .+..++++..      ++.+..+|.++.+.+.+.....+                     
T Consensus       144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw  223 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW  223 (527)
T ss_pred             eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence            544332111  1111111  1234555432      67899999988877654322110                     


Q ss_pred             -----------e-eeEEeccCCCeEEEEcCC-----c-----------eEEEEeCCCCCceeeeee--cc-------cce
Q 021319          152 -----------V-NEIAWNMTGEMFFLTTGN-----G-----------TVEVLTYPSLRPLDTVVA--HT-------AGC  194 (314)
Q Consensus       152 -----------~-~~~~~~~~~~~~~~~~~~-----g-----------~~~~~~~~~~~~~~~~~~--~~-------~~i  194 (314)
                                 + ...++.+....++++.++     +           .+...+.++.+..-.++.  |.       ...
T Consensus       224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence                       0 012333444455555432     1           444555555554433332  21       112


Q ss_pred             EEEEECCCCC---EEEEeeCCCeEEEeeCCCcEEE
Q 021319          195 YCIAIDPMGR---YFAVGSADSLVSLWDISEMLCV  226 (314)
Q Consensus       195 ~~i~~~~~~~---~l~t~~~dg~i~vwd~~~~~~~  226 (314)
                      .-+.+..+|+   .++.+.++|.+.+.|.++++.+
T Consensus       304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            3334445665   7889999999999999988775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.68  E-value=0.48  Score=43.74  Aligned_cols=224  Identities=16%  Similarity=0.177  Sum_probs=113.2

Q ss_pred             CCEEEEEeCC------CcEEEEeCCCCceeeeEEecCc--eEEEEEccCCCEEEEEeCC-C-----cEEEEEccCCeEee
Q 021319           79 ADLIATASGD------KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD-D-----ELTILDVRKFKPIH  144 (314)
Q Consensus        79 ~~~l~s~~~D------~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-~-----~i~i~d~~~~~~~~  144 (314)
                      +.+++.||.+      ..+..+|..++.......+...  ...++. .++...++|+.+ +     ++..||.+..+...
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            3466667666      4677888887755443333221  122332 356777888888 2     46678877665433


Q ss_pred             eeccCc-ceeeEEeccCCCeEEEEcCCce-----EEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCC---
Q 021319          145 RRKFGY-EVNEIAWNMTGEMFFLTTGNGT-----VEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---  213 (314)
Q Consensus       145 ~~~~~~-~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg---  213 (314)
                      ...... ....-.-...|..+++|+.+|.     +..|+....+  .+..........-..  .-+|+..++|+.++   
T Consensus       364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSN  441 (571)
T ss_pred             cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCcc
Confidence            111110 1111112346778888887754     4445443221  111111111111122  23577888888665   


Q ss_pred             ---eEEEeeCCCcEEEE--EeeecccCeEEEEEccCCcEEEEecCCc-----eEEEEECCCCCeEEE--Eec-cCcccee
Q 021319          214 ---LVSLWDISEMLCVR--TFTKLEWPVRTISFSHTGDYIASASEDL-----FIDISNVHTGRTVHQ--IPC-RAAMNSV  280 (314)
Q Consensus       214 ---~i~vwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~s~s~d~-----~v~v~~~~~~~~~~~--~~~-~~~i~~v  280 (314)
                         .+..||..+..-..  .+........  .-.-++.+.+.|+.|+     .|..+|..+.+-...  +.. +..+-.+
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~  519 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV  519 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence               46778876654321  1111111111  1224677788888775     256677655432211  111 1222223


Q ss_pred             EEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          281 EWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       281 ~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      .+  ++...+.||.|+..+   .+++..|+-+
T Consensus       520 ~~--~~~ly~vGG~~~~~~---l~~ve~ydp~  546 (571)
T KOG4441|consen  520 VL--GGKLYAVGGFDGNNN---LNTVECYDPE  546 (571)
T ss_pred             EE--CCEEEEEecccCccc---cceeEEcCCC
Confidence            33  567778899887766   5667777643

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.67  E-value=0.28  Score=45.39  Aligned_cols=188  Identities=13%  Similarity=0.129  Sum_probs=97.7

Q ss_pred             CCEEEEEEcCCCCCEEEEEe-----CCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-----------
Q 021319           67 DSVDQLCWDPKHADLIATAS-----GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-----------  130 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~-----~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----------  130 (314)
                      ..+...+.+|++....+...     .|..-.||=...+..............-.|+|+|..+++.....           
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~  429 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT  429 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence            45678888998755444442     34444444322222122222222345677999988777664321           


Q ss_pred             -cEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEE---EeCCCCC-ce---eeee-ecccceEEEEECC
Q 021319          131 -ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV---LTYPSLR-PL---DTVV-AHTAGCYCIAIDP  201 (314)
Q Consensus       131 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~-~~---~~~~-~~~~~i~~i~~~~  201 (314)
                       .+.+.++.......  .....+..+.|+++|..+++.. ++++.+   ....... .+   ..+. .-...+..++|.+
T Consensus       430 gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~  506 (591)
T PRK13616        430 GQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT  506 (591)
T ss_pred             ceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence             22222333222211  2345689999999999888766 467766   3322222 11   1121 1222357889999


Q ss_pred             CCCEEEEeeCCCeEEEeeCC-CcEEEEEeee--cccCeEEEEEccCCcEEEEecCCceEEEE
Q 021319          202 MGRYFAVGSADSLVSLWDIS-EMLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDIS  260 (314)
Q Consensus       202 ~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~s~d~~v~v~  260 (314)
                      +++++ ++..++...+|.+. .+.....+..  ...++.+|+=+|+  .++....++.+.+-
T Consensus       507 ~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l~  565 (591)
T PRK13616        507 GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQLP  565 (591)
T ss_pred             CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEec
Confidence            88855 55555544455543 1222222122  2346677776663  34445556655544

>PHA02713 hypothetical protein; Provisional

Probab=96.66  E-value=0.23  Score=45.76  Aligned_cols=182  Identities=10%  Similarity=0.006  Sum_probs=88.0

Q ss_pred             CCEEEEEeCC------CcEEEEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCC-----cEEEEEccCCeEeeee
Q 021319           79 ADLIATASGD------KTVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHRR  146 (314)
Q Consensus        79 ~~~l~s~~~D------~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~  146 (314)
                      +.+.+.||.+      ..+..||+.+........+.... ......-+++..++|+.++     ++..||+.+.+.....
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP  383 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence            4566677753      34667888776543322221111 1112233677778888754     3778888765443221


Q ss_pred             ccCccee-eEEeccCCCeEEEEcCCc-----------------------eEEEEeCCCCC--ceeeeeecccceEEEEEC
Q 021319          147 KFGYEVN-EIAWNMTGEMFFLTTGNG-----------------------TVEVLTYPSLR--PLDTVVAHTAGCYCIAID  200 (314)
Q Consensus       147 ~~~~~~~-~~~~~~~~~~~~~~~~~g-----------------------~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~  200 (314)
                      ....+.. ..+-..++..+++|+.++                       .+..|+....+  .+..+.........++  
T Consensus       384 ~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--  461 (557)
T PHA02713        384 DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--  461 (557)
T ss_pred             CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE--
Confidence            1111111 111133567777776442                       34455543221  1111100011111222  


Q ss_pred             CCCCEEEEeeCCC------eEEEeeCCC-c--EEEEEeeecccCeEEEEEccCCcEEEEecCCc--eEEEEECCC
Q 021319          201 PMGRYFAVGSADS------LVSLWDISE-M--LCVRTFTKLEWPVRTISFSHTGDYIASASEDL--FIDISNVHT  264 (314)
Q Consensus       201 ~~~~~l~t~~~dg------~i~vwd~~~-~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~--~v~v~~~~~  264 (314)
                      -+++..+.|+.++      .+..||..+ .  ..+..++........+.  -++++.+.|+.|+  .+..+|..+
T Consensus       462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCccc
Confidence            2466767776542      467888875 3  33333322222222222  3788888999887  556666554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.012  Score=55.70  Aligned_cols=95  Identities=17%  Similarity=0.250  Sum_probs=69.2

Q ss_pred             CeEEEEcCCceEEEEeCCC-CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE--
Q 021319          162 EMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT--  238 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~--  238 (314)
                      ..++.++..|.+-..++.. .++...-..-.+++++++|+.+|+.++.|-.+|.|.+||+...+.++.+..+..|...  
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            3466777778877776644 3332222223568999999999999999999999999999998888877766655444  


Q ss_pred             -EEEccCCcEEEEecCCce
Q 021319          239 -ISFSHTGDYIASASEDLF  256 (314)
Q Consensus       239 -~~~sp~~~~l~s~s~d~~  256 (314)
                       +.+..++..+.++..-|.
T Consensus       180 ~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc
Confidence             445566777777777775

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.0073  Score=57.10  Aligned_cols=98  Identities=15%  Similarity=0.261  Sum_probs=70.9

Q ss_pred             CCEEEEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCcccee
Q 021319          203 GRYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSV  280 (314)
Q Consensus       203 ~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v  280 (314)
                      +..++.|++.|.+...|+....+ ...-.....+|.+++|+.+|++++.|=.+|-|.+||++.++.++.+. +..+..+|
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            55788899999999999977533 22223456799999999999999999999999999999999888765 33344443


Q ss_pred             ---EEcCCCCeeEEEecCCcccc
Q 021319          281 ---EWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       281 ---~~~~~~~~la~~~~d~~~~~  300 (314)
                         .|..++..+.++..-++.|+
T Consensus       179 i~v~~t~~nS~llt~D~~Gsf~~  201 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGSFWK  201 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCceEE
Confidence               44444555555554444443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.47  E-value=0.29  Score=42.57  Aligned_cols=142  Identities=9%  Similarity=0.087  Sum_probs=75.6

Q ss_pred             eeeEEeccCCCeEEEEc-----------CCc-eEEEEeCCC--CCc--eeeeeecccceEEEEECCCCCEEEEeeCCCeE
Q 021319          152 VNEIAWNMTGEMFFLTT-----------GNG-TVEVLTYPS--LRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLV  215 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~~~-----------~~g-~~~~~~~~~--~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i  215 (314)
                      ...++|.++|.++++..           ..+ .|.++.-..  .+.  ...+......+..+++.+++ +++ ++.....
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~   93 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL   93 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence            45567777777766642           122 666665321  221  22232223346789999888 444 4444433


Q ss_pred             EEeeCCC-------cEEE-EEeee----cccCeEEEEEccCCcEEEEecCC-------------------ceEEEEECCC
Q 021319          216 SLWDISE-------MLCV-RTFTK----LEWPVRTISFSHTGDYIASASED-------------------LFIDISNVHT  264 (314)
Q Consensus       216 ~vwd~~~-------~~~~-~~~~~----~~~~v~~~~~sp~~~~l~s~s~d-------------------~~v~v~~~~~  264 (314)
                      ++.|...       .+.+ ..+..    +......++|.|||.+.++-+..                   +.+.-++..+
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg  173 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG  173 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence            4445431       1111 22222    12346789999999877655521                   3344444444


Q ss_pred             CCeEEEEecc-CccceeEEcCCCCeeEEEecCC
Q 021319          265 GRTVHQIPCR-AAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       265 ~~~~~~~~~~-~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      ++ +..+... .....++|+|++.++++-..+.
T Consensus       174 ~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~  205 (367)
T TIGR02604       174 GK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDDP  205 (367)
T ss_pred             Ce-EEEEecCcCCCccceECCCCCEEEEccCCC
Confidence            33 3333221 1356899999999987655443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.46  E-value=0.57  Score=43.27  Aligned_cols=225  Identities=16%  Similarity=0.167  Sum_probs=112.0

Q ss_pred             CCCCCEEEEeeCCC------cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC------CcEEEEeC
Q 021319           29 NCTGTKLASGSVDQ------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------KTVRLWDA   96 (314)
Q Consensus        29 s~~g~~l~s~~~D~------~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D------~~v~iwd~   96 (314)
                      +..+..++.||.++      .+..+|..++.  +.....+. +...-.+++...  +.+.++||.|      .++-.||.
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~--w~~~a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE--WSSLAPMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCc--EeecCCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEEecC
Confidence            33456777788773      56677765432  22222222 222233444443  3577888888      45667888


Q ss_pred             CCCceeeeEEecCceEEEE-EccCCCEEEEEeCCCc-----EEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcC
Q 021319           97 RSGKCSQQAELSGENINIT-YKPDGTHIAVGNRDDE-----LTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (314)
                      +..+......+...-.... -.-+|...++|+.||.     +-.||.++.+.-...... ..-..-.-...+..+++++.
T Consensus       357 ~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  357 RTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             CCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence            8777544333322222111 1236778889998874     666776654432211111 11111222446777777775


Q ss_pred             Cc------eEEEEeCCCCC-----ceeeeeecccceEEEEECCCCCEEEEeeCCC-----eEEEeeCCCcEEEEEeeecc
Q 021319          170 NG------TVEVLTYPSLR-----PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEMLCVRTFTKLE  233 (314)
Q Consensus       170 ~g------~~~~~~~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~  233 (314)
                      ++      .+..|+-.+.+     ++.+-..+   ....  .-++.+.+.|+.|+     +|..||..+.+-... ....
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~---~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~  510 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSG---FGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMT  510 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCccccccc---ceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCc
Confidence            44      34445433221     11111111   1122  22577888888887     367788765433211 1122


Q ss_pred             cCeEEEEEc-cCCcEEEEecCCc-----eEEEEECCC
Q 021319          234 WPVRTISFS-HTGDYIASASEDL-----FIDISNVHT  264 (314)
Q Consensus       234 ~~v~~~~~s-p~~~~l~s~s~d~-----~v~v~~~~~  264 (314)
                      .+...+... -+++..+.|+.|+     .|..||..+
T Consensus       511 ~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  511 SPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             cccccccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence            222222222 3567777788774     345555443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.16  E-value=0.65  Score=38.98  Aligned_cols=261  Identities=11%  Similarity=0.109  Sum_probs=117.8

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecC---CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH---ADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~   96 (314)
                      ...+.+|.|..+.+-++.|. .+.  |+.....+..+.... ....   .-....+.+..  .+.++.| ..+ +.+...
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~-~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~   87 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVS-LDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTT   87 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE------S-----EEEEEEEET--TEEEEEE-ETT-EEEEES
T ss_pred             CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccc-cCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEec
Confidence            44899999985555566554 564  344444443333221 1111   12345667654  3345544 333 344444


Q ss_pred             CCCceeeeEE----ecCceEEEEEccCCCEEEEEeCCCcEEEE-Ec-cCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319           97 RSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTIL-DV-RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        97 ~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~-d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      +.|+--....    ..+....+....++..++.+ ..+.|..- |- .+.+.+. ......+..+..++++.+++++...
T Consensus        88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~-~~~~gs~~~~~r~~dG~~vavs~~G  165 (302)
T PF14870_consen   88 DGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVV-SETSGSINDITRSSDGRYVAVSSRG  165 (302)
T ss_dssp             STTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEEETTS
T ss_pred             CCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcc-cCCcceeEeEEECCCCcEEEEECcc
Confidence            4454333222    22334444444444333333 33332221 11 1222221 1223456777778899888888666


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeC-CCcEEEEE----eeecccCeEEEEEccCC
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI-SEMLCVRT----FTKLEWPVRTISFSHTG  245 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~-~~~~~~~~----~~~~~~~v~~~~~sp~~  245 (314)
                      ....-|+.....-...-..-...+..|.|+|++.+..++ +.|.|++=+. ........    .......+..++|.|++
T Consensus       166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~  244 (302)
T PF14870_consen  166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN  244 (302)
T ss_dssp             SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred             cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence            655556543221111111234678999999998775544 8888888872 22222211    11123458899999999


Q ss_pred             cEEEEecCCceEEEEECCCCCeEEEEec----cCccceeEEcCCCCeeEEEe
Q 021319          246 DYIASASEDLFIDISNVHTGRTVHQIPC----RAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       246 ~~l~s~s~d~~v~v~~~~~~~~~~~~~~----~~~i~~v~~~~~~~~la~~~  293 (314)
                      ...|+|+....++  ....|+.=++.+.    ....+.|.|.+..+.++.|.
T Consensus       245 ~~wa~gg~G~l~~--S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~  294 (302)
T PF14870_consen  245 EIWAVGGSGTLLV--STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ  294 (302)
T ss_dssp             -EEEEESTT-EEE--ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred             CEEEEeCCccEEE--eCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence            9888777664332  3444554444332    23577898887677776554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.15  E-value=0.58  Score=38.32  Aligned_cols=144  Identities=15%  Similarity=0.152  Sum_probs=86.5

Q ss_pred             ceeeEEeccCCCeEEEEc---CCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEee-CCCcEEE
Q 021319          151 EVNEIAWNMTGEMFFLTT---GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD-ISEMLCV  226 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd-~~~~~~~  226 (314)
                      .+...+.++++..+++..   ....+++....  ....... ....+..-.|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            567788899998776655   33444444332  2222221 223567778999988877777677777774 2222211


Q ss_pred             -EEeeec--ccCeEEEEEccCCcEEEEec---CCceEEEEECC---CC--CeE----EEEe-ccCccceeEEcCCCCeeE
Q 021319          227 -RTFTKL--EWPVRTISFSHTGDYIASAS---EDLFIDISNVH---TG--RTV----HQIP-CRAAMNSVEWNPKYNLLA  290 (314)
Q Consensus       227 -~~~~~~--~~~v~~~~~sp~~~~l~s~s---~d~~v~v~~~~---~~--~~~----~~~~-~~~~i~~v~~~~~~~~la  290 (314)
                       ..+...  ...|.++++||||..+|...   .++.|.|--+.   .+  ..+    .... ....+.+++|.++..+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             112111  12799999999999888665   35677766543   23  111    1111 134789999999998877


Q ss_pred             EEecCCc
Q 021319          291 YAGDDKN  297 (314)
Q Consensus       291 ~~~~d~~  297 (314)
                      .+.....
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            6665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA02713 hypothetical protein; Provisional

Probab=96.10  E-value=0.28  Score=45.26  Aligned_cols=143  Identities=8%  Similarity=0.015  Sum_probs=72.1

Q ss_pred             CCEEEEEeCCC-----cEEEEeCCCCceeeeEEecCceEE-EEEccCCCEEEEEeCCC----------------------
Q 021319           79 ADLIATASGDK-----TVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDD----------------------  130 (314)
Q Consensus        79 ~~~l~s~~~D~-----~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~----------------------  130 (314)
                      +.+.+.||.++     ++..||..+........+...... ....-+++..++|+.++                      
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~  431 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS  431 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccccc
Confidence            35666677653     478899887765432222211111 11123677777787652                      


Q ss_pred             -cEEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCC------ceEEEEeCCC-CC--ceeeeeecccceEEEEE
Q 021319          131 -ELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGN------GTVEVLTYPS-LR--PLDTVVAHTAGCYCIAI  199 (314)
Q Consensus       131 -~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~-~~--~~~~~~~~~~~i~~i~~  199 (314)
                       .+..||+++.+........ ..........++..+++|+.+      ..+..|+... .+  .+..+.........+++
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~  511 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH  511 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE
Confidence             3667887765443211110 011111223456677777643      2345566543 21  12222222222223333


Q ss_pred             CCCCCEEEEeeCCC--eEEEeeCCCc
Q 021319          200 DPMGRYFAVGSADS--LVSLWDISEM  223 (314)
Q Consensus       200 ~~~~~~l~t~~~dg--~i~vwd~~~~  223 (314)
                        +++..++|+.+|  .+..||..+.
T Consensus       512 --~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        512 --DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             --CCEEEEEeeecceeehhhcCcccc
Confidence              678889999888  6667776554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.06  E-value=0.19  Score=48.45  Aligned_cols=138  Identities=12%  Similarity=0.139  Sum_probs=83.6

Q ss_pred             eEEEEEccCCCEEEEEeC--CCcEEEEEccCCeE--------eeee----ccCcceeeEEeccCCC-eEEEEcCCceEEE
Q 021319          111 NINITYKPDGTHIAVGNR--DDELTILDVRKFKP--------IHRR----KFGYEVNEIAWNMTGE-MFFLTTGNGTVEV  175 (314)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~--------~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~  175 (314)
                      +..+...+|+...++...  +..|..||++....        ++..    .......++.|.|.-. ..++...++.+++
T Consensus       103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV  182 (1405)
T ss_pred             ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence            345566778766655433  33688899976432        1111    1122345667777654 3455667787777


Q ss_pred             EeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee---c-ccCeEEEEEccCCcEEE
Q 021319          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---L-EWPVRTISFSHTGDYIA  249 (314)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---~-~~~v~~~~~sp~~~~l~  249 (314)
                      .......+...-..-....+|++|+|.|+.++.|-.+|++.-|-.. +.+...+..   . ...|.+|+|=..-.+|+
T Consensus       183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            7654332221111224457999999999999999999999998753 322222221   2 25688888866665555

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.99  E-value=0.98  Score=39.49  Aligned_cols=227  Identities=15%  Similarity=0.120  Sum_probs=97.5

Q ss_pred             ccEEEEEEC-----------CCCCEEEEee-CCCcEEEeecCCCCCCceeeEEeec---C-----CC--CEEEEEEcCCC
Q 021319           21 KKVHSVAWN-----------CTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRG---H-----AD--SVDQLCWDPKH   78 (314)
Q Consensus        21 ~~V~~v~~s-----------~~g~~l~s~~-~D~~v~iw~~~~~~~~~~~~~~~~~---h-----~~--~v~~l~~~~~~   78 (314)
                      ++++..-|+           .+.++|+..+ ..+.|.|.|+.+..........+..   +     +.  .+.|   -|+ 
T Consensus        65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hc---lp~-  140 (461)
T PF05694_consen   65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHC---LPD-  140 (461)
T ss_dssp             --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE----SS-
T ss_pred             CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeee---cCC-
Confidence            466666665           2345666665 7889999998754322222111211   0     11  1222   243 


Q ss_pred             CCEEEEEeCC------CcEEEEeCCCCceeeeEEecCc--e--EEEEEccCCCEEEEEeC--------------------
Q 021319           79 ADLIATASGD------KTVRLWDARSGKCSQQAELSGE--N--INITYKPDGTHIAVGNR--------------------  128 (314)
Q Consensus        79 ~~~l~s~~~D------~~v~iwd~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~~~--------------------  128 (314)
                      +++++|+-.|      |.+-+.|-.+-.+....+....  .  ..+-+.|..+.++++..                    
T Consensus       141 G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~y  220 (461)
T PF05694_consen  141 GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKY  220 (461)
T ss_dssp             --EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S
T ss_pred             ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccc
Confidence            4566665332      4556666655544443333221  1  23556777777777654                    


Q ss_pred             CCcEEEEEccCCeEeeeeccCc---ceeeEEe--ccCCCeEEEE-cCCceEEEEeC-CCCC----ceeeeee--------
Q 021319          129 DDELTILDVRKFKPIHRRKFGY---EVNEIAW--NMTGEMFFLT-TGNGTVEVLTY-PSLR----PLDTVVA--------  189 (314)
Q Consensus       129 d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~-~~~g~~~~~~~-~~~~----~~~~~~~--------  189 (314)
                      ..++.+||+++.+.++.+..+.   -...+.|  .|....-+++ .-.++|..|.- ...+    .+..+..        
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            3479999999999999887763   2345555  3444443333 34445544432 2111    1111111        


Q ss_pred             ---------cccceEEEEECCCCCEEEE-eeCCCeEEEeeCCCcEE---EEEee-e---------------cccCeEEEE
Q 021319          190 ---------HTAGCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLC---VRTFT-K---------------LEWPVRTIS  240 (314)
Q Consensus       190 ---------~~~~i~~i~~~~~~~~l~t-~~~dg~i~vwd~~~~~~---~~~~~-~---------------~~~~v~~~~  240 (314)
                               -..=|+.|.+|.|.++|.. +=..|.|+.||+.+...   ..++. +               ......-+.
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq  380 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ  380 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence                     1233689999999999764 45689999999976432   22211 1               111235577


Q ss_pred             EccCCcEEEEe
Q 021319          241 FSHTGDYIASA  251 (314)
Q Consensus       241 ~sp~~~~l~s~  251 (314)
                      .|.||+.|...
T Consensus       381 lS~DGkRlYvT  391 (461)
T PF05694_consen  381 LSLDGKRLYVT  391 (461)
T ss_dssp             E-TTSSEEEEE
T ss_pred             EccCCeEEEEE
Confidence            88888776644

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.96  E-value=0.49  Score=38.76  Aligned_cols=101  Identities=13%  Similarity=0.073  Sum_probs=63.7

Q ss_pred             ceEEEEECCCCCEEEEee---CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE-CCCCCeE
Q 021319          193 GCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN-VHTGRTV  268 (314)
Q Consensus       193 ~i~~i~~~~~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~-~~~~~~~  268 (314)
                      .+...+++++++.+|.-.   ....+.++........ .+.+  ..+..-+|++++...+....+....++. ...++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-VLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-eccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678999999999776544   2334555554332211 1122  2566678999988887777666666663 3333322


Q ss_pred             -EEEec---cCccceeEEcCCCCeeEEEecCC
Q 021319          269 -HQIPC---RAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       269 -~~~~~---~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                       ..+..   .+.|.++++||||.-+|....+.
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~  133 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDG  133 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecC
Confidence             12221   22799999999999988887554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.94  E-value=1.1  Score=39.66  Aligned_cols=220  Identities=13%  Similarity=0.146  Sum_probs=111.1

Q ss_pred             EEEEEEcCCCCCEEEEEeCCC----cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-----------cEE
Q 021319           69 VDQLCWDPKHADLIATASGDK----TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-----------ELT  133 (314)
Q Consensus        69 v~~l~~~~~~~~~l~s~~~D~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----------~i~  133 (314)
                      +...+++|++..++++-+..|    .+++.|+.+++.+...........+.|.++++.++-...+.           .+.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            346788898754554544444    48999999997654321111222399999988877665443           255


Q ss_pred             EEEccCCe----EeeeeccCcc-eeeEEeccCCCeEEEEcC---C-ceEEEEeCCCC----CceeeeeecccceEEEEEC
Q 021319          134 ILDVRKFK----PIHRRKFGYE-VNEIAWNMTGEMFFLTTG---N-GTVEVLTYPSL----RPLDTVVAHTAGCYCIAID  200 (314)
Q Consensus       134 i~d~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~-g~~~~~~~~~~----~~~~~~~~~~~~i~~i~~~  200 (314)
                      .+.+.+..    .+........ ...+..+.+++++++...   + ..+.+.++...    .....+......+....-+
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~  285 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH  285 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence            66655432    2332222222 456778889988776532   2 45666666553    2233333333333332222


Q ss_pred             CCCCEEEEeeC---CCeEEEeeCCCcE---EEEEeeecccCeEEEEEccCCcEEE-EecCCc--eEEEEECCCCCeEEEE
Q 021319          201 PMGRYFAVGSA---DSLVSLWDISEML---CVRTFTKLEWPVRTISFSHTGDYIA-SASEDL--FIDISNVHTGRTVHQI  271 (314)
Q Consensus       201 ~~~~~l~t~~~---dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~-s~s~d~--~v~v~~~~~~~~~~~~  271 (314)
                      ..+.+++....   ++.|.-.++....   ....+..+...+.-..+...+.+|+ +--.++  .|.+++...+.....+
T Consensus       286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~  365 (414)
T PF02897_consen  286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREI  365 (414)
T ss_dssp             ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEE
T ss_pred             cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeee
Confidence            24444443322   3456666766543   1224444444333344445555444 444554  5788888744444444


Q ss_pred             ec--cCccceeEEcCCCCe
Q 021319          272 PC--RAAMNSVEWNPKYNL  288 (314)
Q Consensus       272 ~~--~~~i~~v~~~~~~~~  288 (314)
                      +.  .+.|..+...++.+.
T Consensus       366 ~~p~~g~v~~~~~~~~~~~  384 (414)
T PF02897_consen  366 PLPEAGSVSGVSGDFDSDE  384 (414)
T ss_dssp             ESSSSSEEEEEES-TT-SE
T ss_pred             cCCcceEEeccCCCCCCCE
Confidence            43  344555555554433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.77  E-value=1.9  Score=41.23  Aligned_cols=193  Identities=12%  Similarity=0.068  Sum_probs=111.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEecCceE---------EEEEc----------------cCCCEEEEEeCCCcEEE
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAELSGENI---------NITYK----------------PDGTHIAVGNRDDELTI  134 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~---------~~~~~----------------~~~~~l~~~~~d~~i~i  134 (314)
                      +.+..++.++.|.-.|..+|+..-....+....         .+.+.                ..+..++.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            466777888888888988888665543322110         01111                13447888999999999


Q ss_pred             EEccCCeEeeeeccCccee-------------eEEecc--CCCeEEEEcC----------CceEEEEeCCCCCceeeeee
Q 021319          135 LDVRKFKPIHRRKFGYEVN-------------EIAWNM--TGEMFFLTTG----------NGTVEVLTYPSLRPLDTVVA  189 (314)
Q Consensus       135 ~d~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~  189 (314)
                      +|.++.+.+.......++.             ...-.|  .+..++++..          +|.++.+|..+.+.+-.+..
T Consensus       275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP  354 (764)
T ss_pred             EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence            9999988875543221110             000111  1344555532          58889998877665443321


Q ss_pred             ----------------cc-cce-EEEEECCCCCEEEEeeC------------------CCeEEEeeCCCcEEEEEeeecc
Q 021319          190 ----------------HT-AGC-YCIAIDPMGRYFAVGSA------------------DSLVSLWDISEMLCVRTFTKLE  233 (314)
Q Consensus       190 ----------------~~-~~i-~~i~~~~~~~~l~t~~~------------------dg~i~vwd~~~~~~~~~~~~~~  233 (314)
                                      +. ..+ ..+++++....+..+..                  .+.|.-.|.++++..-.++...
T Consensus       355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~  434 (764)
T TIGR03074       355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH  434 (764)
T ss_pred             CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence                            00 011 23455555444433221                  2345666777777665554311


Q ss_pred             cC---------eEEEEEcc-CCc---EEEEecCCceEEEEECCCCCeEEEEe
Q 021319          234 WP---------VRTISFSH-TGD---YIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       234 ~~---------v~~~~~sp-~~~---~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      ..         ..-+.+.- +|+   .++.++++|.+++.|..+|+.+...+
T Consensus       435 hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       435 HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            11         11123332 563   89999999999999999999987653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.69  E-value=1.4  Score=38.82  Aligned_cols=80  Identities=19%  Similarity=0.184  Sum_probs=56.0

Q ss_pred             ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE-EE-EccC----------------Cc-EEEEecC
Q 021319          193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT-IS-FSHT----------------GD-YIASASE  253 (314)
Q Consensus       193 ~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-~~-~sp~----------------~~-~l~s~s~  253 (314)
                      .+.++..+|++++.|+.+.=|.|.++|+.++..++-.+++..+-.. +. ..+.                .. +++-+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            3678999999999999888899999999998887777776543111 00 0011                11 2445667


Q ss_pred             CceEEEEECCCCCeEEEEe
Q 021319          254 DLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       254 d~~v~v~~~~~~~~~~~~~  272 (314)
                      =|.+.||.+.+|..+..+.
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             CCeEEEEecCCCCEEEEEE
Confidence            7888999988887776554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.68  E-value=0.98  Score=37.17  Aligned_cols=164  Identities=10%  Similarity=0.174  Sum_probs=100.5

Q ss_pred             cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC--cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCcee
Q 021319          108 SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD  185 (314)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  185 (314)
                      ......++|+|+.+.|++......-.++=-..++.+.++...  .....+.|.-.+.+.++--.++.+..+.......+.
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            345667999999999998887777666655666777766443  345566666666666665667777777654332111


Q ss_pred             -----eee----ec-ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE---EEEEeee-------cccCeEEEEEccC-
Q 021319          186 -----TVV----AH-TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML---CVRTFTK-------LEWPVRTISFSHT-  244 (314)
Q Consensus       186 -----~~~----~~-~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~-------~~~~v~~~~~sp~-  244 (314)
                           .+.    .+ +.+-..++++|....|..+-...-+.+|.+....   .+.....       .-..++.+.|++. 
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~  244 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT  244 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence                 111    12 4456789999988887777666667777664322   1111111       1235778889865 


Q ss_pred             CcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319          245 GDYIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      +..|+-+.++..+-..|. +|.++..+.
T Consensus       245 ~~LLVLS~ESr~l~Evd~-~G~~~~~ls  271 (316)
T COG3204         245 NSLLVLSDESRRLLEVDL-SGEVIELLS  271 (316)
T ss_pred             CcEEEEecCCceEEEEec-CCCeeeeEE
Confidence            556666666776666665 455555544

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.39  E-value=2.7  Score=40.39  Aligned_cols=283  Identities=12%  Similarity=0.127  Sum_probs=144.6

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC--CCC---EEEEEeCCCcEEEEeC
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HAD---LIATASGDKTVRLWDA   96 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~---~l~s~~~D~~v~iwd~   96 (314)
                      .++....+.+..+++-++.++.+...+++...   .....-..-...|.|+.++|.  +.+   +++.|.++..+.+--.
T Consensus       489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~---l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~  565 (1096)
T KOG1897|consen  489 KITIGVVSANASQVVVAGGGLALFYLEIEDGG---LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF  565 (1096)
T ss_pred             ceEEEEEeecceEEEEecCccEEEEEEeeccc---eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence            34444444455566666655555555544322   111111122456888888865  334   8888988877765543


Q ss_pred             CCCceeeeE-EecC-----ceEEEEEccCCCEEEEEeCCCcEEEEEc--cCCeEeeee--ccC-cceeeEEeccCCCeEE
Q 021319           97 RSGKCSQQA-ELSG-----ENINITYKPDGTHIAVGNRDDELTILDV--RKFKPIHRR--KFG-YEVNEIAWNMTGEMFF  165 (314)
Q Consensus        97 ~~~~~~~~~-~~~~-----~~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~  165 (314)
                      ....+.... .+..     .++-.++-.|..+|.++..||.+..+.+  .+.+.-.+.  ..+ .++.--.|+......+
T Consensus       566 ~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~v  645 (1096)
T KOG1897|consen  566 LPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAV  645 (1096)
T ss_pred             CCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEE
Confidence            222222211 1222     2334556667889999999999876654  443332222  222 3334444555555555


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecccceE-EEEECCC--CCEEEEeeCCCeEEEeeCCCcEE--EEEeeecccCeEEEE
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCY-CIAIDPM--GRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTIS  240 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~--~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~  240 (314)
                      ++..+.-..+|.....-....+  .-..+. ...|+.+  ...|+++. .+.+++..++.-+.  ++++. .....+.++
T Consensus       646 fa~sdrP~viY~~n~kLv~spl--s~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~  721 (1096)
T KOG1897|consen  646 FALSDRPTVIYSSNGKLVYSPL--SLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRIC  721 (1096)
T ss_pred             EEeCCCCEEEEecCCcEEEecc--chHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheE
Confidence            5555544444433211000000  000111 1123222  34556554 45578877765433  34443 233567788


Q ss_pred             EccCCcEEEEecC-----------C---ceEEEEECCCCCeEEEEec-----cCccceeEEcCC-CCeeEEEecCCcccc
Q 021319          241 FSHTGDYIASASE-----------D---LFIDISNVHTGRTVHQIPC-----RAAMNSVEWNPK-YNLLAYAGDDKNKYQ  300 (314)
Q Consensus       241 ~sp~~~~l~s~s~-----------d---~~v~v~~~~~~~~~~~~~~-----~~~i~~v~~~~~-~~~la~~~~d~~~~~  300 (314)
                      +.+....+++.+.           .   ..++++|-+|-+.+.....     ..+|.++.|+.| +.+++.|..-  .|.
T Consensus       722 ~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~--v~P  799 (1096)
T KOG1897|consen  722 YQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGL--VYP  799 (1096)
T ss_pred             ecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEe--ecc
Confidence            8886655554332           1   3466777666555533221     235777889988 6666666532  332


Q ss_pred             ----cccceEEeccccC
Q 021319          301 ----ADEGVFRIYGFEN  313 (314)
Q Consensus       301 ----~~~~~~~~~~~~~  313 (314)
                          ++.|-+-||-|++
T Consensus       800 de~ep~~GRIivfe~~e  816 (1096)
T KOG1897|consen  800 DENEPVNGRIIVFEFEE  816 (1096)
T ss_pred             CCCCcccceEEEEEEec
Confidence                5567777777754

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.21  E-value=1.5  Score=36.29  Aligned_cols=141  Identities=15%  Similarity=0.174  Sum_probs=81.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee------------
Q 021319           79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR------------  146 (314)
Q Consensus        79 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------  146 (314)
                      ++.|+.|..+| +.+++...............+..+...|+-+.+++-+ |+.+.++++....+....            
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~   84 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP   84 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence            46778888888 8888883222222222222356677777666655543 499999998765443311            


Q ss_pred             -cc--CcceeeEE--eccCCCeEEEEcCCceEEEEeCCCC-----CceeeeeecccceEEEEECCCCCEEEEeeCCCeEE
Q 021319          147 -KF--GYEVNEIA--WNMTGEMFFLTTGNGTVEVLTYPSL-----RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS  216 (314)
Q Consensus       147 -~~--~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~  216 (314)
                       ..  ...+...+  -...+...++.....++.+|.+...     +..+++ .-...+..++|.  ++.++.|..++ ..
T Consensus        85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~~-f~  160 (275)
T PF00780_consen   85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTSKG-FY  160 (275)
T ss_pred             ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeCCc-eE
Confidence             11  11122222  1233444444445558888877542     223332 234668888887  66777777655 88


Q ss_pred             EeeCCCcEE
Q 021319          217 LWDISEMLC  225 (314)
Q Consensus       217 vwd~~~~~~  225 (314)
                      +.|+.++..
T Consensus       161 ~idl~~~~~  169 (275)
T PF00780_consen  161 LIDLNTGSP  169 (275)
T ss_pred             EEecCCCCc
Confidence            889886544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.20  E-value=1.2  Score=35.35  Aligned_cols=160  Identities=13%  Similarity=0.168  Sum_probs=88.1

Q ss_pred             ceeeEEeccCCCeEEEEcCC---------ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-EeeCCCeEEEee-
Q 021319          151 EVNEIAWNMTGEMFFLTTGN---------GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWD-  219 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd-  219 (314)
                      +.+.-.-+|+|+++.-...+         |.++.|....  .+..+..--.-.+.++|+.+.+.+. +-+.+=.|.-|| 
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            34455567888886544332         3333333211  0111111112235788888776654 555566787788 


Q ss_pred             -CCCcE-----EEEEeee---cc-cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEc-CCCC
Q 021319          220 -ISEML-----CVRTFTK---LE-WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWN-PKYN  287 (314)
Q Consensus       220 -~~~~~-----~~~~~~~---~~-~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~-~~~~  287 (314)
                       ..++.     .+..+++   .+ .....++..-+|.+.++.=.-++|.-.|..+|+.+.++.. ...|++++|- |+..
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d  267 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLD  267 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence             44442     2222222   11 1122345556677777666778888889999999988765 4569999997 4444


Q ss_pred             ee-EEEecCCc-----cccc-ccceEEecccc
Q 021319          288 LL-AYAGDDKN-----KYQA-DEGVFRIYGFE  312 (314)
Q Consensus       288 ~l-a~~~~d~~-----~~~~-~~~~~~~~~~~  312 (314)
                      .| +|+..+.+     .=++ -++++||=|++
T Consensus       268 ~~yvT~aa~~~dp~~~~~~p~aG~iykitgl~  299 (310)
T KOG4499|consen  268 ILYVTTAAKFDDPVRTNTDPNAGTIYKITGLN  299 (310)
T ss_pred             EEEEEehhcccCchhcccCCCCccEEEecCcc
Confidence            44 33333211     1123 35677887764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.18  E-value=0.98  Score=41.78  Aligned_cols=102  Identities=14%  Similarity=0.192  Sum_probs=67.9

Q ss_pred             eEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-ecccCeEEEEEc--cCCcEEEEecCCceEEEEECC-------
Q 021319          194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFS--HTGDYIASASEDLFIDISNVH-------  263 (314)
Q Consensus       194 i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s--p~~~~l~s~s~d~~v~v~~~~-------  263 (314)
                      +.-+.-+.-++..++-+....+.|||.+.+....+-. ....+|.+++|.  |+++.+++.+-...|.++.-.       
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            3444445555554554445579999998776432211 235689999886  889999999999999888531       


Q ss_pred             --CCCeEEEEec----cCccceeEEcCCCCeeEEEecC
Q 021319          264 --TGRTVHQIPC----RAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       264 --~~~~~~~~~~----~~~i~~v~~~~~~~~la~~~~d  295 (314)
                        +..+++++..    .-+|.+..|-++|.+++.+|..
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNq  149 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQ  149 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCE
Confidence              1234444432    2379999999999888766643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.15  E-value=0.12  Score=28.95  Aligned_cols=32  Identities=16%  Similarity=0.215  Sum_probs=26.6

Q ss_pred             cceEEEEECCCC---CEEEEeeCCCeEEEeeCCCc
Q 021319          192 AGCYCIAIDPMG---RYFAVGSADSLVSLWDISEM  223 (314)
Q Consensus       192 ~~i~~i~~~~~~---~~l~t~~~dg~i~vwd~~~~  223 (314)
                      +++.++.|+|+.   .+|+.+-..|.|.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            357899999854   58998988999999999853

It contains a characteristic DLL sequence motif.

>PHA03098 kelch-like protein; Provisional

Probab=94.90  E-value=3.1  Score=38.29  Aligned_cols=188  Identities=10%  Similarity=0.096  Sum_probs=86.9

Q ss_pred             cCCCEEEEEeCCC------cEEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCC-----ceEEEEeCCCCCc--
Q 021319          118 PDGTHIAVGNRDD------ELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGN-----GTVEVLTYPSLRP--  183 (314)
Q Consensus       118 ~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~--  183 (314)
                      .++..++.|+.++      .+..||+.+.+........ ..........++..++.|+.+     ..+..|+....+-  
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            3556666776543      4667887765543221111 111111122356677777654     2345555433221  


Q ss_pred             eeeeeecccceEEEEECCCCCEEEEeeCC------CeEEEeeCCCcEEEEEeeecccC-eEEEEEccCCcEEEEecCC--
Q 021319          184 LDTVVAHTAGCYCIAIDPMGRYFAVGSAD------SLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASED--  254 (314)
Q Consensus       184 ~~~~~~~~~~i~~i~~~~~~~~l~t~~~d------g~i~vwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~d--  254 (314)
                      ...+. +...-.+++ .-++++.+.|+.+      ..+..||..+.+-.. ......+ ....+...++...+.|+.+  
T Consensus       373 ~~~lp-~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        373 EPPLI-FPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIYHDGKIYVIGGISYI  449 (534)
T ss_pred             CCCcC-cCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEEECCEEEEECCccCC
Confidence            11111 111011122 2356777777732      357888887653321 1111111 0111233466777777643  


Q ss_pred             ------ceEEEEECCCCC--eEEEEec-cCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          255 ------LFIDISNVHTGR--TVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       255 ------~~v~v~~~~~~~--~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                            ..+.++|..+.+  .+..++. +..-..+..  ++.+++.||.+...+   ...+.+|+.+.
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~---~~~v~~yd~~~  512 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYY---INEIEVYDDKT  512 (534)
T ss_pred             CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcc---cceeEEEeCCC
Confidence                  237788876643  2111111 111122222  677888888765432   35677777654

>PHA03098 kelch-like protein; Provisional

Probab=94.87  E-value=2.4  Score=39.00  Aligned_cols=182  Identities=10%  Similarity=0.061  Sum_probs=82.1

Q ss_pred             CCEEEEEeCCC------cEEEEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCC-----cEEEEEccCCeEeeee
Q 021319           79 ADLIATASGDK------TVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHRR  146 (314)
Q Consensus        79 ~~~l~s~~~D~------~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~  146 (314)
                      +.+++.||.++      .+..||..+.+......+.... ......-+++..+.|+.++     .+..||+.+.+.....
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  374 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP  374 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence            34666666542      5677888777654322221111 1111223677777887653     4667777665433211


Q ss_pred             ccCcc-eeeEEeccCCCeEEEEcCC------ceEEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCC----
Q 021319          147 KFGYE-VNEIAWNMTGEMFFLTTGN------GTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS----  213 (314)
Q Consensus       147 ~~~~~-~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg----  213 (314)
                      ....+ ....+-..++..+++|+..      ..+..|+..+.+  .+..+........++  ..+++..+.|+.+.    
T Consensus       375 ~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~  452 (534)
T PHA03098        375 PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI--YHDGKIYVIGGISYIDNI  452 (534)
T ss_pred             CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE--EECCEEEEECCccCCCCC
Confidence            11111 1111122355666666521      345666654321  111111001111122  22466667776432    


Q ss_pred             ----eEEEeeCCCcEEEE--EeeecccCeEEEEEccCCcEEEEecCC-----ceEEEEECCC
Q 021319          214 ----LVSLWDISEMLCVR--TFTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHT  264 (314)
Q Consensus       214 ----~i~vwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~  264 (314)
                          .+..||..+.+-..  .+.........+.  .++++++.|+.+     ..+.++|..+
T Consensus       453 ~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        453 KVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             cccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence                37888887654322  1111111111122  366777777654     3455666544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.45  E-value=0.28  Score=27.52  Aligned_cols=33  Identities=30%  Similarity=0.384  Sum_probs=27.3

Q ss_pred             CCEEEEEEcCCCC--CEEEEEeCCCcEEEEeCCCC
Q 021319           67 DSVDQLCWDPKHA--DLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        67 ~~v~~l~~~~~~~--~~l~s~~~D~~v~iwd~~~~   99 (314)
                      ++|.++.|+|...  ++|+-+-.-+.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4688999998765  78888878899999999864

It contains a characteristic DLL sequence motif.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.40  E-value=1.3  Score=31.90  Aligned_cols=85  Identities=9%  Similarity=0.096  Sum_probs=53.7

Q ss_pred             EECCCCCEEEEeeCCCeEEEeeCCCcEEE-------EEeeecccCeEEEEEcc-----CCcEEEEecCCceEEEEECCCC
Q 021319          198 AIDPMGRYFAVGSADSLVSLWDISEMLCV-------RTFTKLEWPVRTISFSH-----TGDYIASASEDLFIDISNVHTG  265 (314)
Q Consensus       198 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-------~~~~~~~~~v~~~~~sp-----~~~~l~s~s~d~~v~v~~~~~~  265 (314)
                      .|+.....|+.++.-|+|.|++.......       -.+.+....|.+|+--|     +.+.|+.|+.. .+..||++..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccC
Confidence            46666667888888999999987533211       12334556777776443     24567666655 4889999876


Q ss_pred             CeEEEEeccCccceeEEc
Q 021319          266 RTVHQIPCRAAMNSVEWN  283 (314)
Q Consensus       266 ~~~~~~~~~~~i~~v~~~  283 (314)
                      ..+........++++.+-
T Consensus        84 ~d~Fyke~~DGvn~i~~g  101 (136)
T PF14781_consen   84 SDLFYKEVPDGVNAIVIG  101 (136)
T ss_pred             chhhhhhCccceeEEEEE
Confidence            655433334567777663

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.35  E-value=5.3  Score=38.58  Aligned_cols=192  Identities=19%  Similarity=0.252  Sum_probs=114.5

Q ss_pred             eEEecCceEEEEEccCCCEEEEEeCC--------------CcEEEEEccCCeEeeeecc-----CcceeeEEeccC-CCe
Q 021319          104 QAELSGENINITYKPDGTHIAVGNRD--------------DELTILDVRKFKPIHRRKF-----GYEVNEIAWNMT-GEM  163 (314)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~  163 (314)
                      +.........+++.+....+.+.+..              ..+.++|-.+++.++..+.     ...+.++.+.-+ +.+
T Consensus       710 tvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~  789 (1096)
T KOG1897|consen  710 TVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTY  789 (1096)
T ss_pred             eecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceE
Confidence            34445555566666643333333221              1366777777766654433     234555567666 566


Q ss_pred             EEEEcC----------CceEEEEeCCCCCceeeeeec--ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee
Q 021319          164 FFLTTG----------NGTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (314)
Q Consensus       164 ~~~~~~----------~g~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~  231 (314)
                      +++|+.          .|++.++.+.....+.....+  .+.++++.. -+|+++|.  -+..|++|+..+.+.++.-..
T Consensus       790 ~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~  866 (1096)
T KOG1897|consen  790 YVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECN  866 (1096)
T ss_pred             EEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhc
Confidence            666653          588888887665544444322  234444432 25666653  466799999988866666666


Q ss_pred             cccCeEEEEEccCCcEEEEecCCceEEEEECC--CCCeEEEEe--ccCccceeEEcCCCCeeEEEecCCccc
Q 021319          232 LEWPVRTISFSHTGDYIASASEDLFIDISNVH--TGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       232 ~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~--~~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      +..++..+...-.+..++.|..-+.+.+-...  .|.......  +...++++++-.+..+| -+-.+++.|
T Consensus       867 ~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf  937 (1096)
T KOG1897|consen  867 ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLF  937 (1096)
T ss_pred             ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE-eecccccEE
Confidence            77788999999999999999888777665543  332332221  13356777776555554 344455555

>PHA02790 Kelch-like protein; Provisional

Probab=94.34  E-value=3.9  Score=37.06  Aligned_cols=139  Identities=10%  Similarity=0.068  Sum_probs=65.0

Q ss_pred             CCEEEEEeCC--CcEEEEeCCCCceeeeEEecCceE-EEEEccCCCEEEEEeCCC---cEEEEEccCCeEeeeeccCcce
Q 021319           79 ADLIATASGD--KTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDD---ELTILDVRKFKPIHRRKFGYEV  152 (314)
Q Consensus        79 ~~~l~s~~~D--~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~  152 (314)
                      +.+.+.||.+  .++..||..+++......+..... .....-+++..++|+.++   .+..||+++.+.........+.
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r  398 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH  398 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence            4565666653  467888887665443322221111 112233677777877654   3667888765543321111111


Q ss_pred             -eeEEeccCCCeEEEEcCCceEEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCC-----eEEEeeCCC
Q 021319          153 -NEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISE  222 (314)
Q Consensus       153 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-----~i~vwd~~~  222 (314)
                       ...+...++..++.|+   ....|+....+  .+..+.........+.+  +++..+.|+.++     .+..||..+
T Consensus       399 ~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        399 YKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             ccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence             1112234555666553   45566654322  11111111111222222  577778887652     355555543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.24  E-value=0.026  Score=52.68  Aligned_cols=82  Identities=15%  Similarity=0.277  Sum_probs=49.7

Q ss_pred             ceeeEEeccC---CCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEE-----------EECCCCCEEEEeeCCCeEE
Q 021319          151 EVNEIAWNMT---GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCI-----------AIDPMGRYFAVGSADSLVS  216 (314)
Q Consensus       151 ~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i-----------~~~~~~~~l~t~~~dg~i~  216 (314)
                      .+.-+.|.|-   ..+.-.+..++.+++........ ..+.+|...+..+           .++|||+.+|.++.||.++
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~  260 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG  260 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence            3445555542   23333445567777776543221 2334466554433           3799999999999999999


Q ss_pred             EeeC-----CCcEEEEEeeecc
Q 021319          217 LWDI-----SEMLCVRTFTKLE  233 (314)
Q Consensus       217 vwd~-----~~~~~~~~~~~~~  233 (314)
                      .|.+     ....|+...+.|+
T Consensus       261 f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  261 FYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             eeeeeeeccccHhhhhccCCCC
Confidence            8875     2334555666665

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.21  E-value=4.4  Score=37.68  Aligned_cols=57  Identities=18%  Similarity=0.330  Sum_probs=40.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeEEe--cCceEEEE--EccCCCEEEEEeCCCcEEEEEc
Q 021319           81 LIATASGDKTVRLWDARSGKCSQQAEL--SGENINIT--YKPDGTHIAVGNRDDELTILDV  137 (314)
Q Consensus        81 ~l~s~~~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~--~~~~~~~l~~~~~d~~i~i~d~  137 (314)
                      ..+.-+...++.|||.+.+.......+  .+.+..+.  ..|++..+.+.+..+.|.++.-
T Consensus        43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            444444556889999998886655555  44455544  4689999888888888888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.05  E-value=2.9  Score=34.51  Aligned_cols=160  Identities=13%  Similarity=0.240  Sum_probs=103.5

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC--ceEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRK  139 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  139 (314)
                      +.|-...+.+++|+|+.. .|.+......-.++-...|+.++..++.+  ..-.+.+..++.++++-.++..+.++.+..
T Consensus        81 i~g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            445555599999999865 45555566666777667788888776654  344688888888888888888888876654


Q ss_pred             CeEeee-----ecc------CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC-cee--eeeec-------ccceEEEE
Q 021319          140 FKPIHR-----RKF------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLD--TVVAH-------TAGCYCIA  198 (314)
Q Consensus       140 ~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~--~~~~~-------~~~i~~i~  198 (314)
                      ...+..     +..      ..-...++|.+....++++-+..-+.+|...... .+.  ....+       -..+..+.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            322111     111      2335678999999999999888877777654322 110  00011       12355667


Q ss_pred             ECC-CCCEEEEeeCCCeEEEeeCCC
Q 021319          199 IDP-MGRYFAVGSADSLVSLWDISE  222 (314)
Q Consensus       199 ~~~-~~~~l~t~~~dg~i~vwd~~~  222 (314)
                      +++ ++..|+.+..++.+.-.|...
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCC
Confidence            775 456677777777777777653

>PRK13684 Ycf48-like protein; Provisional

Probab=94.04  E-value=3.5  Score=35.36  Aligned_cols=106  Identities=14%  Similarity=0.181  Sum_probs=60.2

Q ss_pred             ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE
Q 021319          191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ  270 (314)
Q Consensus       191 ~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~  270 (314)
                      ...+..+.+.|++.+++++......+.+|-....-..........+.++.+.|+++.++.+ ..|.+.+-....|..-..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK  250 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence            3467889999998877766543333333322111111122344578899999999877654 557665433344433221


Q ss_pred             --Ee---ccCccceeEEcCCCCeeEEEecCCcc
Q 021319          271 --IP---CRAAMNSVEWNPKYNLLAYAGDDKNK  298 (314)
Q Consensus       271 --~~---~~~~i~~v~~~~~~~~la~~~~d~~~  298 (314)
                        .+   ....+.+++|.|++.+++.+ .++.+
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v  282 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTL  282 (334)
T ss_pred             ccCCccccccceeeEEEcCCCCEEEEc-CCCeE
Confidence              11   12347889999987766544 44433

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.74  E-value=0.57  Score=43.22  Aligned_cols=71  Identities=15%  Similarity=0.128  Sum_probs=45.0

Q ss_pred             CCCCEEEEeeCCCeEEEeeCCC----cEEEEE--eee--------------------cccCeEEEEEcc----CCcEEEE
Q 021319          201 PMGRYFAVGSADSLVSLWDISE----MLCVRT--FTK--------------------LEWPVRTISFSH----TGDYIAS  250 (314)
Q Consensus       201 ~~~~~l~t~~~dg~i~vwd~~~----~~~~~~--~~~--------------------~~~~v~~~~~sp----~~~~l~s  250 (314)
                      ++...++.+..||.+.......    +.....  +..                    ....+..++.++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4566788888899888887654    111111  110                    012355667777    7899999


Q ss_pred             ecCCceEEEEECCCCCeEEEE
Q 021319          251 ASEDLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~  271 (314)
                      .+.|+.+++||+.++..+...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999987654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.69  E-value=6.7  Score=37.40  Aligned_cols=78  Identities=19%  Similarity=0.284  Sum_probs=52.7

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCC--------C-CceeeEE--------eecCCCCEEEEEEcCCC--CCEE
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHG--------H-GKVKDIE--------LRGHADSVDQLCWDPKH--ADLI   82 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~--------~-~~~~~~~--------~~~h~~~v~~l~~~~~~--~~~l   82 (314)
                      .|+.|..+|+|++++-.|..+.+.+ .+....        . ..+....        ...+...|..+.|+|.+  +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            7999999999999999988665544 332110        0 1111111        12345678899999974  4577


Q ss_pred             EEEeCCCcEEEEeCCCCc
Q 021319           83 ATASGDKTVRLWDARSGK  100 (314)
Q Consensus        83 ~s~~~D~~v~iwd~~~~~  100 (314)
                      +.=..|+++|+||+....
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            778899999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.46  E-value=3.8  Score=37.24  Aligned_cols=101  Identities=16%  Similarity=0.213  Sum_probs=63.5

Q ss_pred             cceEEEEECCCC-----CEEEEeeCCCeEEEeeCCC-----c--EEEEEeee-cccCe--EEEEEccCCcEEEEecCCce
Q 021319          192 AGCYCIAIDPMG-----RYFAVGSADSLVSLWDISE-----M--LCVRTFTK-LEWPV--RTISFSHTGDYIASASEDLF  256 (314)
Q Consensus       192 ~~i~~i~~~~~~-----~~l~t~~~dg~i~vwd~~~-----~--~~~~~~~~-~~~~v--~~~~~sp~~~~l~s~s~d~~  256 (314)
                      ..+..++|.|-+     .+||+ -....|.||.+-.     .  .+-++.+- ...+|  ..+-|+|....|+.-.....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            457888898853     34554 4677899999841     1  11222211 11122  23569999999987766554


Q ss_pred             EEEEECCC--CCeEEEEeccCccceeEEcCCCCeeEEEe
Q 021319          257 IDISNVHT--GRTVHQIPCRAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       257 v~v~~~~~--~~~~~~~~~~~~i~~v~~~~~~~~la~~~  293 (314)
                      --+++++.  .+..-.+...+.|.|.+|.+||+.|+.+-
T Consensus       136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAv  174 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAV  174 (671)
T ss_pred             eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEe
Confidence            45566653  33334466788999999999998875543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.14  E-value=0.74  Score=25.40  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=29.3

Q ss_pred             cCCcEEEEec-CCceEEEEECCCCCeEEEEeccCccceeEE
Q 021319          243 HTGDYIASAS-EDLFIDISNVHTGRTVHQIPCRAAMNSVEW  282 (314)
Q Consensus       243 p~~~~l~s~s-~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~  282 (314)
                      |++++|+.+. .++.|.++|..+++.+..++....-..++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            6777666655 578899999999988888776544555555

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.99  E-value=3.6  Score=32.26  Aligned_cols=177  Identities=15%  Similarity=0.159  Sum_probs=98.4

Q ss_pred             CCCEEEEEeC--CCcEEEEEccCCeEeeeeccCc-ceeeEEeccCCCe-EEEEcCCceEEEEeCCCCCceeeeeecccce
Q 021319          119 DGTHIAVGNR--DDELTILDVRKFKPIHRRKFGY-EVNEIAWNMTGEM-FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC  194 (314)
Q Consensus       119 ~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i  194 (314)
                      +|.++.+.+.  ...|++||+.+.+.+....... ++..-....-++. .+..-.+|.-..++..+.+.+..+. .+++-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            3444444443  3458999999888776654431 1111111111222 2333455666666666555444332 12233


Q ss_pred             EEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec--ccCe---EEEEEccCCcEEEEecCCceEEEEECCCCCeEE
Q 021319          195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--EWPV---RTISFSHTGDYIASASEDLFIDISNVHTGRTVH  269 (314)
Q Consensus       195 ~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~--~~~v---~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~  269 (314)
                      +.++  .|+.-|..++...+++.-|.++.....++...  ..||   +.+.| -+|...|-.=.+..|-..+..+|+.+.
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEE
Confidence            3433  45666777776777888887766554443322  1122   23333 356666666666667777888888776


Q ss_pred             EEec-------------cCccceeEEcCCC-CeeEEEecCCccc
Q 021319          270 QIPC-------------RAAMNSVEWNPKY-NLLAYAGDDKNKY  299 (314)
Q Consensus       270 ~~~~-------------~~~i~~v~~~~~~-~~la~~~~d~~~~  299 (314)
                      .+..             ....|.+|+-|++ +++.+|-.=..+|
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lf  254 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLF  254 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeE
Confidence            6532             1246899999987 6677766555555

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.93  E-value=3.7  Score=36.71  Aligned_cols=143  Identities=15%  Similarity=0.178  Sum_probs=78.6

Q ss_pred             ccCCCEEEE-EeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC-------CeEEEEcCCceEEEEeCCC-CCceeee
Q 021319          117 KPDGTHIAV-GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-------EMFFLTTGNGTVEVLTYPS-LRPLDTV  187 (314)
Q Consensus       117 ~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~-~~~~~~~  187 (314)
                      ..+..++.. |.....+.-.|++.++.+........+ -+.+.|..       ...++|..+..+...+-+- +..+...
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            334444443 444555666677777776665554444 45555542       3455666555554444321 1111111


Q ss_pred             eec----ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          188 VAH----TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       188 ~~~----~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      ...    ...-.|.. ....-++|.|+..|-|++||--.-.-...+++...+|..|..+.+|+++++..... +-+.|+
T Consensus       555 esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~y-llL~d~  631 (776)
T COG5167         555 ESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNY-LLLTDV  631 (776)
T ss_pred             eehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecce-EEEEec
Confidence            110    01111222 22345899999999999999643333334566677888899999998876554443 344443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.82  E-value=5.9  Score=34.34  Aligned_cols=152  Identities=10%  Similarity=0.060  Sum_probs=74.6

Q ss_pred             EeccCCCeEEEEcC---CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec
Q 021319          156 AWNMTGEMFFLTTG---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (314)
Q Consensus       156 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~  232 (314)
                      .|..+|+.+++++.   ..++...++.+.+..+...+-........++|+.+.++--..+..++--|+.+.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            46677877766554   456666677666543322221122234556788887655445567888899887665555444


Q ss_pred             ccCeEEEEEc--cCCcEEEEe---cC-------------------CceEEEEECCCCCeEEEEeccCccceeEEcCCC-C
Q 021319          233 EWPVRTISFS--HTGDYIASA---SE-------------------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY-N  287 (314)
Q Consensus       233 ~~~v~~~~~s--p~~~~l~s~---s~-------------------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~-~  287 (314)
                      +.-+....|.  .++..++-.   -.                   ...|.-.|+.+|+....+....-+.=+-|+|.. .
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~  201 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT  201 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence            4444445553  445544321   11                   245566677777655445445567788899965 5


Q ss_pred             eeEEEecCCcccccccc-eEEecccc
Q 021319          288 LLAYAGDDKNKYQADEG-VFRIYGFE  312 (314)
Q Consensus       288 ~la~~~~d~~~~~~~~~-~~~~~~~~  312 (314)
                      +|+++-+-.     ++- .-|||-++
T Consensus       202 li~fCHEGp-----w~~Vd~RiW~i~  222 (386)
T PF14583_consen  202 LIMFCHEGP-----WDLVDQRIWTIN  222 (386)
T ss_dssp             EEEEEE-S------TTTSS-SEEEEE
T ss_pred             EEEEeccCC-----cceeceEEEEEE
Confidence            556655431     222 35777764

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.71  E-value=8.1  Score=36.85  Aligned_cols=29  Identities=31%  Similarity=0.407  Sum_probs=22.4

Q ss_pred             ccCcceeeEEeccCCCeEEEEcCCceEEE
Q 021319          147 KFGYEVNEIAWNMTGEMFFLTTGNGTVEV  175 (314)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  175 (314)
                      ...+++..+..+++|..++..+..|-..+
T Consensus        82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~  110 (717)
T PF10168_consen   82 PPLFEVHQISLNPTGSLLALVGPRGVVVL  110 (717)
T ss_pred             CCceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence            34568899999999999988887664433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10115 protease 2; Provisional

Probab=92.70  E-value=9.5  Score=36.38  Aligned_cols=235  Identities=10%  Similarity=0.003  Sum_probs=110.8

Q ss_pred             cEEEEEECCCCCEEEEeeC-CC----cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC-----CcE
Q 021319           22 KVHSVAWNCTGTKLASGSV-DQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-----KTV   91 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~-D~----~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D-----~~v   91 (314)
                      .+..+.|||||++|+-+-. +|    .|++-|+.++.   .....+.+-   -..++|.+++..++.+.-.+     ..|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~---~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN---WYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC---CCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence            5778899999998776532 23    56677765431   111112221   14589998766566655432     356


Q ss_pred             EEEeCCCCc--eeeeEEecCc-e-EEEEEccCCCEEEEEeC---CCcEEEEEccC--Ce--EeeeeccCcceeeEEeccC
Q 021319           92 RLWDARSGK--CSQQAELSGE-N-INITYKPDGTHIAVGNR---DDELTILDVRK--FK--PIHRRKFGYEVNEIAWNMT  160 (314)
Q Consensus        92 ~iwd~~~~~--~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~---d~~i~i~d~~~--~~--~~~~~~~~~~~~~~~~~~~  160 (314)
                      ..+++.++.  -......... . +....+.+++++++.+.   ++.+.+++...  ..  ++.....+... .+ .+..
T Consensus       202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~  279 (686)
T PRK10115        202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-SL-DHYQ  279 (686)
T ss_pred             EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE-EE-EeCC
Confidence            677887762  2222221111 1 23334447777765443   34677888422  22  12111112111 11 1223


Q ss_pred             CCeEEEEcCC-ceEEEE--eCCCCCceeeeeec-c-cceEEEEECCCCCEEEEeeCCCeEEE--eeCCCcEEEEEee-ec
Q 021319          161 GEMFFLTTGN-GTVEVL--TYPSLRPLDTVVAH-T-AGCYCIAIDPMGRYFAVGSADSLVSL--WDISEMLCVRTFT-KL  232 (314)
Q Consensus       161 ~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~-~-~~i~~i~~~~~~~~l~t~~~dg~i~v--wd~~~~~~~~~~~-~~  232 (314)
                      +..++....+ .+.+++  ++........+..+ . ..+..+.+. .+.++++...+|.-++  ++.... .+..+. ..
T Consensus       280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~  357 (686)
T PRK10115        280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDD  357 (686)
T ss_pred             CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCC
Confidence            3333333321 233333  33321122333344 2 256777776 3345556666775444  454322 233332 11


Q ss_pred             ccCeEEEEEc--cCC-cEEEEecC---CceEEEEECCCCC
Q 021319          233 EWPVRTISFS--HTG-DYIASASE---DLFIDISNVHTGR  266 (314)
Q Consensus       233 ~~~v~~~~~s--p~~-~~l~s~s~---d~~v~v~~~~~~~  266 (314)
                      ...+..+.++  +++ .++++.+.   -..+..+|..+++
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        358 PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            2223333444  443 34444433   2677888887654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.15  E-value=4.4  Score=34.74  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=57.3

Q ss_pred             ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE---EEEee----ecccCeEEEEEccC----CcEEEEecCC-------
Q 021319          193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---VRTFT----KLEWPVRTISFSHT----GDYIASASED-------  254 (314)
Q Consensus       193 ~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~----~~~~~v~~~~~sp~----~~~l~s~s~d-------  254 (314)
                      .++.|+|.|+|+++++ .+.|.|++++ .++..   +..+.    ..+.....++++|+    +.+.++-+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4688999999988775 5699999999 33332   22221    12345788999995    3333333321       


Q ss_pred             -ceEEEEECCCC-------CeE-EEEec----cCccceeEEcCCCCeeEEEecCCc
Q 021319          255 -LFIDISNVHTG-------RTV-HQIPC----RAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       255 -~~v~v~~~~~~-------~~~-~~~~~----~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                       ..|.-|....+       +.+ ..++.    .-.-..++|.|++.+.++.|+..+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence             23333333222       111 12222    113467999999988888887654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.97  E-value=1  Score=43.87  Aligned_cols=146  Identities=13%  Similarity=0.188  Sum_probs=90.3

Q ss_pred             cEEEEEECCCCCE--EEEeeCCCcEEEeecCCCCCCce-eeEEeecC------CCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           22 KVHSVAWNCTGTK--LASGSVDQTARVWHIEPHGHGKV-KDIELRGH------ADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        22 ~V~~v~~s~~g~~--l~s~~~D~~v~iw~~~~~~~~~~-~~~~~~~h------~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ++..+...+|+..  ++..+.+-.|..||+.......- ....+..|      .....++.|+|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            4555556677765  33445555888899865332210 11112222      223457788887655667788899998


Q ss_pred             EEeCCCCc-eeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC--eEeee--eccCcceeeEEeccCCCeEEEE
Q 021319           93 LWDARSGK-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHR--RKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        93 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      +.-+.... .+..+.+.....+++|+|.|+.+++|...|++.-|-..-.  ..++.  .+..+.+.++.|-.....+++-
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            88664332 2233455666778999999999999999999888865432  11111  1124678888887666655543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.94  E-value=11  Score=35.42  Aligned_cols=180  Identities=13%  Similarity=0.103  Sum_probs=86.9

Q ss_pred             CcEEEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee-ee---ccCcceeeEEeccCCCe
Q 021319           89 KTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH-RR---KFGYEVNEIAWNMTGEM  163 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~---~~~~~~~~~~~~~~~~~  163 (314)
                      -.|+|++.. |+...... .++..+.+.|+.+. .|++...+|.+.++++....... ..   .....+..+.+...|  
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--  139 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--  139 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence            457888874 44433332 24478889998665 55566789999999974321111 01   011123222222222  


Q ss_pred             EEEEcCCceEEEEeCCCC---CceeeeeecccceEEEEECCCCC---EEEEeeCCCeEEEeeCCCcE-EEEEeeecccCe
Q 021319          164 FFLTTGNGTVEVLTYPSL---RPLDTVVAHTAGCYCIAIDPMGR---YFAVGSADSLVSLWDISEML-CVRTFTKLEWPV  236 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~i~~i~~~~~~~---~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v  236 (314)
                      +++-..+|++....-...   +.+........+..|-...++++   .++--..--...++...... ....+......+
T Consensus       140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~  219 (829)
T KOG2280|consen  140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV  219 (829)
T ss_pred             eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence            333444555544432111   11111112222223333333322   11111000001222221111 111222223457


Q ss_pred             EEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319          237 RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       237 ~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      ..+..||+.++||-=.+.|.+.+-+....+.+-.+.
T Consensus       220 ~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  220 VKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             EEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            788999999999999999999999887666554443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.91  E-value=5.5  Score=31.87  Aligned_cols=90  Identities=16%  Similarity=0.197  Sum_probs=61.4

Q ss_pred             eeEEeccCCCeEEEE-cCCceEEEEeC--CCCC-----ceeeeee----cccceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319          153 NEIAWNMTGEMFFLT-TGNGTVEVLTY--PSLR-----PLDTVVA----HTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~-~~~g~~~~~~~--~~~~-----~~~~~~~----~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~  220 (314)
                      +.++|+.+.+.+... +.+-.+..|++  ++..     .+..+..    .+..+-.++++.+|.+.++.-..++|.-.|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            567888776655544 45566766763  3221     1111111    1222345666778998888888999999999


Q ss_pred             CCcEEEEEeeecccCeEEEEEc
Q 021319          221 SEMLCVRTFTKLEWPVRTISFS  242 (314)
Q Consensus       221 ~~~~~~~~~~~~~~~v~~~~~s  242 (314)
                      .+++++++++-..-.++++||-
T Consensus       241 ~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEec
Confidence            9999999998777789999995

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.28  E-value=12  Score=34.34  Aligned_cols=145  Identities=17%  Similarity=0.304  Sum_probs=88.7

Q ss_pred             ccEEEEEECCCCCE-EEEee--CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC---CEEEEEeCCCcEEEE
Q 021319           21 KKVHSVAWNCTGTK-LASGS--VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA---DLIATASGDKTVRLW   94 (314)
Q Consensus        21 ~~V~~v~~s~~g~~-l~s~~--~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---~~l~s~~~D~~v~iw   94 (314)
                      .+|+.++|. ||++ ++|.-  ..|.++.=|        .   ..-|.-..|..++|.|.+.   .-+++..-.+.|.+|
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd--------s---~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVW   87 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD--------S---KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVW   87 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC--------c---cEeeccceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence            478999997 6654 55543  233322211        1   2346677899999998631   134456677899999


Q ss_pred             eCCCC-----c--eeeeEEecCc----eEEEEEccCCCEEEEEeCCCcEEEEEccCC--eEeeeeccCcceeeEEeccCC
Q 021319           95 DARSG-----K--CSQQAELSGE----NINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRRKFGYEVNEIAWNMTG  161 (314)
Q Consensus        95 d~~~~-----~--~~~~~~~~~~----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      -+...     +  +.+..++...    .-.+.|+|....|++-.....-.+++++..  .....++....+.+..|..+|
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence            86522     1  1222233221    224779999888887766655555665432  223345666789999999999


Q ss_pred             CeEEEEcCCc-eEEEEe
Q 021319          162 EMFFLTTGNG-TVEVLT  177 (314)
Q Consensus       162 ~~~~~~~~~g-~~~~~~  177 (314)
                      +.++++.++. ..++|+
T Consensus       168 ~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             CEEEEEeCCeEEEEEec
Confidence            9998887652 334554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.25  E-value=7.5  Score=32.12  Aligned_cols=93  Identities=15%  Similarity=0.250  Sum_probs=64.8

Q ss_pred             EECCCCCEEEEeeCC-----CeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecC------C-----------
Q 021319          198 AIDPMGRYFAVGSAD-----SLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASE------D-----------  254 (314)
Q Consensus       198 ~~~~~~~~l~t~~~d-----g~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~------d-----------  254 (314)
                      .|||||++|...-.|     |.|=+||.+.. +.+-++..|.-....+.+.+||+.|+.+..      |           
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            489999998865333     67999998754 456677777777788999999999987754      1           


Q ss_pred             -ceEEEEECCCCCeEEEE--e---ccCccceeEEcCCCCeeE
Q 021319          255 -LFIDISNVHTGRTVHQI--P---CRAAMNSVEWNPKYNLLA  290 (314)
Q Consensus       255 -~~v~v~~~~~~~~~~~~--~---~~~~i~~v~~~~~~~~la  290 (314)
                       -++-+-|..+|.++.+.  +   ...+|+-++.-++++..+
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf  241 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF  241 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence             23345566677666543  2   134677778878777654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.99  E-value=4.1  Score=36.54  Aligned_cols=91  Identities=15%  Similarity=0.200  Sum_probs=50.3

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc-eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecc
Q 021319          113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT  191 (314)
Q Consensus       113 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  191 (314)
                      .+..++.|..++..+.+|-+.++=.+.+.+-..++.+.+ +.|..+..+. .+++.+                     -.
T Consensus       108 ~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss---------------------~~  165 (741)
T KOG4460|consen  108 QVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS---------------------TS  165 (741)
T ss_pred             EEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC---------------------Cc
Confidence            466788999999998888666554444333333332222 2222222111 111111                     01


Q ss_pred             cceEEEEECCCC---CEEEEeeCCCeEEEeeCCCcEE
Q 021319          192 AGCYCIAIDPMG---RYFAVGSADSLVSLWDISEMLC  225 (314)
Q Consensus       192 ~~i~~i~~~~~~---~~l~t~~~dg~i~vwd~~~~~~  225 (314)
                      -.+...+|+|+.   ..|..-..|..||+||+.....
T Consensus       166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             eeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence            123456788765   5677777888999999876543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.91  E-value=6.6  Score=30.86  Aligned_cols=100  Identities=10%  Similarity=0.109  Sum_probs=55.4

Q ss_pred             CCEEEEEeC--CCcEEEEeCCCCceeeeEEecC-ceEEEEEccCCCEE-EEEeCCCcEEEEEccCCeEeeeeccCcceee
Q 021319           79 ADLIATASG--DKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNE  154 (314)
Q Consensus        79 ~~~l~s~~~--D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  154 (314)
                      +.++.|.+.  ...|++||+.+++.+...++.. ....=....-+..+ ...-.++.-..+|..+.+.+.+.....+-..
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWg  135 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWG  135 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCccee
Confidence            356666554  4678999999998877665542 11111111123333 3344566677788877766655443333333


Q ss_pred             EEeccCCCeEEEEcCCceEEEEeCCC
Q 021319          155 IAWNMTGEMFFLTTGNGTVEVLTYPS  180 (314)
Q Consensus       155 ~~~~~~~~~~~~~~~~g~~~~~~~~~  180 (314)
                      +  ..++..++.+.+..++..-+-.+
T Consensus       136 L--t~d~~~LimsdGsatL~frdP~t  159 (262)
T COG3823         136 L--TSDDKNLIMSDGSATLQFRDPKT  159 (262)
T ss_pred             e--ecCCcceEeeCCceEEEecCHHH
Confidence            3  34566666666666666555433

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.60  E-value=1.3  Score=35.37  Aligned_cols=60  Identities=12%  Similarity=0.222  Sum_probs=44.2

Q ss_pred             EEccCCcEEEEecCCceEEEEECCCCCeEEEE---------------eccCccceeEEcCCCCeeEEEecCCcccc
Q 021319          240 SFSHTGDYIASASEDLFIDISNVHTGRTVHQI---------------PCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       240 ~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~---------------~~~~~i~~v~~~~~~~~la~~~~d~~~~~  300 (314)
                      .+..++.+|+.-+.+|.+++||+.+++.+..-               .....|..+..+.+|.-+++-+. +..|.
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~   91 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYS   91 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEE
Confidence            35578999999999999999999998765432               12245788899988877776653 44453

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.44  E-value=7.4  Score=30.70  Aligned_cols=108  Identities=20%  Similarity=0.311  Sum_probs=64.2

Q ss_pred             CEEEEeeCCCeEEEeeCC--CcEEEEEeeecccCeEEEEEccCCcEEEEecCC---c---eEEEEE---CC--CCCeE--
Q 021319          204 RYFAVGSADSLVSLWDIS--EMLCVRTFTKLEWPVRTISFSHTGDYIASASED---L---FIDISN---VH--TGRTV--  268 (314)
Q Consensus       204 ~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~---~v~v~~---~~--~~~~~--  268 (314)
                      +.|..+.....|.+|++.  ....+.+|... ..|..+.++..|+||+|-=++   .   .+++|-   ..  ...++  
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455444667789999987  33445566544 578999999999999976322   2   555552   11  11111  


Q ss_pred             ---------------------EEEeccCccceeEEcC-CCCeeEEEecCCcccccccceE-----Eecccc
Q 021319          269 ---------------------HQIPCRAAMNSVEWNP-KYNLLAYAGDDKNKYQADEGVF-----RIYGFE  312 (314)
Q Consensus       269 ---------------------~~~~~~~~i~~v~~~~-~~~~la~~~~d~~~~~~~~~~~-----~~~~~~  312 (314)
                                           -+++.+.+..+++=.| +|++|+..++--.+|+..-+++     ++-|||
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe  178 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFE  178 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEech
Confidence                                 1233445677888888 4666655444445555444444     555554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.39  E-value=3.6  Score=32.40  Aligned_cols=62  Identities=8%  Similarity=0.142  Sum_probs=45.0

Q ss_pred             cEEEEecCCceEEEEECC--CCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319          246 DYIASASEDLFIDISNVH--TGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  309 (314)
Q Consensus       246 ~~l~s~s~d~~v~v~~~~--~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~  309 (314)
                      +.|+.+.....|.+|++.  ...++..++.-+.|..++.+..|.+|+|-=++.+.-..  ..+|+|
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~--~fvR~Y   92 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPV--DFVRAY   92 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccc--eEEEEE
Confidence            455455667779999987  45677778878899999999999999887654432211  167776

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.29  E-value=1.5  Score=24.06  Aligned_cols=40  Identities=23%  Similarity=0.312  Sum_probs=27.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEE
Q 021319           77 KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY  116 (314)
Q Consensus        77 ~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  116 (314)
                      ++..++++.-.+++|.++|..+++.............+.+
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            4444666666789999999988877776665444444443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.22  E-value=3.6  Score=38.69  Aligned_cols=102  Identities=15%  Similarity=0.168  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCceEEEEeCCC-------C-------------CceeeeeecccceEEEEEC--CCCCEEEEeeCCCeEEE
Q 021319          160 TGEMFFLTTGNGTVEVLTYPS-------L-------------RPLDTVVAHTAGCYCIAID--PMGRYFAVGSADSLVSL  217 (314)
Q Consensus       160 ~~~~~~~~~~~g~~~~~~~~~-------~-------------~~~~~~~~~~~~i~~i~~~--~~~~~l~t~~~dg~i~v  217 (314)
                      ..+.++++.++|.+.+|....       .             +|...+ .-+..++.++++  ...+++|+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            446788889999999995321       0             111111 123468899998  88889999988888888


Q ss_pred             eeCCCc--EE-EEEeeecccCeEEEEEccCC------cEEEEecCCceEEEEEC
Q 021319          218 WDISEM--LC-VRTFTKLEWPVRTISFSHTG------DYIASASEDLFIDISNV  262 (314)
Q Consensus       218 wd~~~~--~~-~~~~~~~~~~v~~~~~sp~~------~~l~s~s~d~~v~v~~~  262 (314)
                      |-....  +. ...-..+...|.+|+|-++.      ..|++++-.|.+.+|+.
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            866432  11 11111255689999997654      27888999999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.17  E-value=1.6  Score=23.66  Aligned_cols=32  Identities=25%  Similarity=0.197  Sum_probs=19.6

Q ss_pred             eeecccCeEEEEEccCCcEEEEec-CC--ceEEEE
Q 021319          229 FTKLEWPVRTISFSHTGDYIASAS-ED--LFIDIS  260 (314)
Q Consensus       229 ~~~~~~~v~~~~~sp~~~~l~s~s-~d--~~v~v~  260 (314)
                      +......-...+|||||++|+-.+ .+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334445567788999998887554 44  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.00  E-value=2.5  Score=39.04  Aligned_cols=77  Identities=16%  Similarity=0.244  Sum_probs=43.5

Q ss_pred             CCCCEEEEeeCCCcEEEeecCCCC-CC-ceeeEEeec--------------------CCCCEEEEEEcC---CCCCEEEE
Q 021319           30 CTGTKLASGSVDQTARVWHIEPHG-HG-KVKDIELRG--------------------HADSVDQLCWDP---KHADLIAT   84 (314)
Q Consensus        30 ~~g~~l~s~~~D~~v~iw~~~~~~-~~-~~~~~~~~~--------------------h~~~v~~l~~~~---~~~~~l~s   84 (314)
                      ++...++.+..||.+-........ .+ .........                    -...+..+++++   .+..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            466778888889988877665411 11 111100000                    112344555554   24578999


Q ss_pred             EeCCCcEEEEeCCCCceeeeEE
Q 021319           85 ASGDKTVRLWDARSGKCSQQAE  106 (314)
Q Consensus        85 ~~~D~~v~iwd~~~~~~~~~~~  106 (314)
                      -+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999866543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.98  E-value=14  Score=33.21  Aligned_cols=142  Identities=15%  Similarity=0.165  Sum_probs=87.9

Q ss_pred             CCCCEE-EEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCC-------CEEEEEeCCCcEEEEEccCCe-Eeee--
Q 021319           77 KHADLI-ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG-------THIAVGNRDDELTILDVRKFK-PIHR--  145 (314)
Q Consensus        77 ~~~~~l-~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~d~~i~i~d~~~~~-~~~~--  145 (314)
                      ++.++| ..|+....+.--|+..|+++....++... -+.|.|..       ..-++|-.+..+.-.|+|-.. .+..  
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            334444 45555666777788888887777665554 45555542       233456666666666766422 1111  


Q ss_pred             ---eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC
Q 021319          146 ---RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (314)
Q Consensus       146 ---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~  221 (314)
                         +.....-++ .......++++++..|.+++|+.-..+....+++.+.+|..+..+.+|+++.+.| ...+.+-|++
T Consensus       556 sKdY~tKn~Fss-~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         556 SKDYKTKNKFSS-GMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             ehhccccccccc-cccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence               111111111 1222345788899999999999766665556677788899999999999866554 4457777763

>PHA02790 Kelch-like protein; Provisional

Probab=89.95  E-value=15  Score=33.40  Aligned_cols=140  Identities=9%  Similarity=-0.070  Sum_probs=65.1

Q ss_pred             CCEEEEEeCC-----CcEEEEeCCCCceeeeEEecCce--EEEEEccCCCEEEEEeCCC--cEEEEEccCCeEeeeeccC
Q 021319           79 ADLIATASGD-----KTVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRDD--ELTILDVRKFKPIHRRKFG  149 (314)
Q Consensus        79 ~~~l~s~~~D-----~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~  149 (314)
                      +.+++.||.+     .++..||..++.......+....  ..+ ..-++...++|+.++  .+..||+.+.+........
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            3455667654     24667888876654433222111  112 224677777887543  4777887654432221111


Q ss_pred             cce-eeEEeccCCCeEEEEcCCc---eEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc
Q 021319          150 YEV-NEIAWNMTGEMFFLTTGNG---TVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (314)
Q Consensus       150 ~~~-~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~  223 (314)
                      .+. ....-..++..+++|+.++   .+..|+....+-  ...+.........+  .-+++..+.|+   .+.+||.++.
T Consensus       351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~  425 (480)
T PHA02790        351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSN  425 (480)
T ss_pred             CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE--EECCEEEEECC---ceEEecCCCC
Confidence            111 1122234566777766443   345555432210  00000000111122  23466666664   4678887654


Q ss_pred             E
Q 021319          224 L  224 (314)
Q Consensus       224 ~  224 (314)
                      +
T Consensus       426 ~  426 (480)
T PHA02790        426 T  426 (480)
T ss_pred             c
Confidence            3

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.57  E-value=0.052  Score=47.39  Aligned_cols=146  Identities=15%  Similarity=0.255  Sum_probs=97.4

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEE-EEeCCCcEEEEEccCCeEeeeecc
Q 021319           70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKF  148 (314)
Q Consensus        70 ~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~  148 (314)
                      ....|-|.+.+ ++.++.+-.+..||-. ++........+..+.++|.-++..++ .+...+.+.+||+.+..... .+.
T Consensus        38 i~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-LE~  114 (615)
T KOG2247|consen   38 IIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LES  114 (615)
T ss_pred             ceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-Hhc
Confidence            34567777766 5567777888888864 34333444455666788887776655 56677889999986532111 111


Q ss_pred             C--cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319          149 G--YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD  219 (314)
Q Consensus       149 ~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd  219 (314)
                      +  .+..-..|++.....+.+...|++.++.....+.....-.|...++++++.+.+.. +.++.|..+.+-.
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~~L~v~~  186 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDNTLSVTT  186 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHHHHHHhh
Confidence            1  12233678888888888989999999998877765444448889999999987654 4455555444433

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.47  E-value=3.1  Score=33.22  Aligned_cols=64  Identities=14%  Similarity=0.134  Sum_probs=45.3

Q ss_pred             ECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe-------e-------ecccCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319          199 IDPMGRYFAVGSADSLVSLWDISEMLCVRTF-------T-------KLEWPVRTISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       199 ~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-------~-------~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      +...+.++.+-+.+|.+++||+.+.+++..-       .       .....|..+.++.+|.-+++-+. |..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence            4456888999999999999999988764321       1       13345777888888877776553 566777654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.19  E-value=15  Score=32.50  Aligned_cols=146  Identities=15%  Similarity=0.160  Sum_probs=83.6

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCce-eeEEeecCCCCEEEEEEcC---CCCCEEEEEeCCCcEEEEeCCC--Cc-----
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHADSVDQLCWDP---KHADLIATASGDKTVRLWDARS--GK-----  100 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~D~~v~iwd~~~--~~-----  100 (314)
                      .+.|+.||..|.+|||+......... .-++ ..-+.+|.++..-.   ......++.---..+.+|.+..  |.     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            46899999999999998754332111 1111 12346777765431   1122222334456666676521  11     


Q ss_pred             -e----eeeEEecCceEEEEEcc----C-CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319          101 -C----SQQAELSGENINITYKP----D-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus       101 -~----~~~~~~~~~~~~~~~~~----~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                       .    .....+.....+++.-|    . ..++.+-+.||.+.+++-+.....+....-.-...+.+.+.-+.++++...
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence             1    11122233334444433    2 357778899999999997664432222222223456788888999999988


Q ss_pred             ceEEEEeC
Q 021319          171 GTVEVLTY  178 (314)
Q Consensus       171 g~~~~~~~  178 (314)
                      ..+..|.+
T Consensus       196 ~~l~~Yky  203 (418)
T PF14727_consen  196 WTLECYKY  203 (418)
T ss_pred             eeEEEecH
Confidence            88888875

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.18  E-value=0.033  Score=48.52  Aligned_cols=153  Identities=13%  Similarity=0.091  Sum_probs=96.8

Q ss_pred             eEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEEEEEeeec
Q 021319          154 EIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCVRTFTKL  232 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~  232 (314)
                      ...|.+.+..++.++.+-.+..||-.......  ..-++....++|+.++..++ .+-..+.+.+||+.+..-.+.-.+.
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le--~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILE--LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcceecc--cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            34566777677777777777666643322111  11233455678888887654 5666789999999754322111122


Q ss_pred             ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccc--cccceEEec
Q 021319          233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQ--ADEGVFRIY  309 (314)
Q Consensus       233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~--~~~~~~~~~  309 (314)
                      ...-.-+.|++.+..++.+--.+.+.+++..+.+.+-... +-.++.+++|.+.+.. +.++.|..+=+  .++.+++.|
T Consensus       117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~~L~v~~qegeta~lt  195 (615)
T KOG2247|consen  117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDNTLSVTTQEGETASLT  195 (615)
T ss_pred             cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHHHHHHhhhccceeeee
Confidence            2222226799999999999888999999998877665544 5567999999996644 45665543322  445555554

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.93  E-value=17  Score=32.63  Aligned_cols=105  Identities=10%  Similarity=0.058  Sum_probs=60.4

Q ss_pred             cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE--EEEee----e-cccCeEEEEEccCC------c--EEEEec----
Q 021319          192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFT----K-LEWPVRTISFSHTG------D--YIASAS----  252 (314)
Q Consensus       192 ~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~----~-~~~~v~~~~~sp~~------~--~l~s~s----  252 (314)
                      ...+.|+|.|+|++|++--..|.|++++..+...  +..+.    . .......|+++|+-      .  |+....    
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            4578999999998887665469999998654321  21111    1 23457889999985      1  333321    


Q ss_pred             ----CCceEEEEECCC--C-----CeE-EEEeccC--ccceeEEcCCCCeeEEEecCC
Q 021319          253 ----EDLFIDISNVHT--G-----RTV-HQIPCRA--AMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       253 ----~d~~v~v~~~~~--~-----~~~-~~~~~~~--~i~~v~~~~~~~~la~~~~d~  296 (314)
                          ....|.-+.+..  .     +.+ ..++...  .-..++|.|++.++++.|+-+
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g  167 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG  167 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence                122343343321  1     111 1121111  145788999999888887653

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.45  E-value=13  Score=30.88  Aligned_cols=143  Identities=14%  Similarity=0.119  Sum_probs=82.8

Q ss_pred             CCEEEEEeCCCcEEEEEccCCeEe-eeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC-CCceee--eeecccceE
Q 021319          120 GTHIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDT--VVAHTAGCY  195 (314)
Q Consensus       120 ~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~--~~~~~~~i~  195 (314)
                      ++++..+..+..++++|+.++..- ..-.....-..-.|.-.|++..++.-+.-+.+++... ..|.-.  +........
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~  175 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTH  175 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCce
Confidence            567888888899999998775421 1111222233445566788888887444445566533 333211  111222234


Q ss_pred             EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc--CeEEEEEccCCcEEEEecCCceEEEEECCCCC
Q 021319          196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW--PVRTISFSHTGDYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       196 ~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~  266 (314)
                      .+++|  |++-..+..|+.+.+-|+........+...++  .+.++..+++-.+++...+-  +.+-|+...+
T Consensus       176 ~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg--vlivd~s~~s  244 (370)
T COG5276         176 DVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG--VLIVDVSGPS  244 (370)
T ss_pred             eEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc--eEEEecCCCC
Confidence            56665  67777788899999999987654333322222  46777777776666655443  4444554433

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.41  E-value=5.8  Score=30.33  Aligned_cols=31  Identities=23%  Similarity=0.277  Sum_probs=25.2

Q ss_pred             cceEEEEECCCC------CEEEEeeCCCeEEEeeCCC
Q 021319          192 AGCYCIAIDPMG------RYFAVGSADSLVSLWDISE  222 (314)
Q Consensus       192 ~~i~~i~~~~~~------~~l~t~~~dg~i~vwd~~~  222 (314)
                      ..+..++|||.|      -+||+-..++.+.+|.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            368899999964      2688999999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.25  E-value=5  Score=30.67  Aligned_cols=30  Identities=20%  Similarity=0.417  Sum_probs=22.6

Q ss_pred             CEEEEEEcCCC-----CCEEEEEeCCCcEEEEeCC
Q 021319           68 SVDQLCWDPKH-----ADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        68 ~v~~l~~~~~~-----~~~l~s~~~D~~v~iwd~~   97 (314)
                      .+..++|+|.+     .-+|+....++.|.||...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            67788999854     2367777888888888765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.10  E-value=2.6  Score=22.80  Aligned_cols=28  Identities=14%  Similarity=0.255  Sum_probs=18.1

Q ss_pred             ccceEEEEECCCCCEEE-EeeCC--CeEEEe
Q 021319          191 TAGCYCIAIDPMGRYFA-VGSAD--SLVSLW  218 (314)
Q Consensus       191 ~~~i~~i~~~~~~~~l~-t~~~d--g~i~vw  218 (314)
                      ...-....|+|||+.|+ ++..+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34566788999998876 44555  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.96  E-value=9.2  Score=33.79  Aligned_cols=102  Identities=11%  Similarity=0.115  Sum_probs=61.9

Q ss_pred             ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE----EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV----RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       189 ~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      ...++|.+|.|++|++.+|+--.+..|.+++.......    ++.+.-...|....|+.+ .-+|-.+..| +.++.+..
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            34568999999999999999999999999987332211    122222334777778765 4444444443 44444321


Q ss_pred             -CCeEEEE-eccCccceeEEcCCCCeeEEE
Q 021319          265 -GRTVHQI-PCRAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       265 -~~~~~~~-~~~~~i~~v~~~~~~~~la~~  292 (314)
                       .+.++-. .+...|+--.|.|+.+.+.-+
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEeee
Confidence             1122221 234568888888876654333

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.75  E-value=11  Score=35.64  Aligned_cols=103  Identities=11%  Similarity=0.130  Sum_probs=69.7

Q ss_pred             cCCCEEEEEeCCCcEEEEEccC-------C-------------eEeeeeccCcceeeEEec--cCCCeEEEEcCCceEEE
Q 021319          118 PDGTHIAVGNRDDELTILDVRK-------F-------------KPIHRRKFGYEVNEIAWN--MTGEMFFLTTGNGTVEV  175 (314)
Q Consensus       118 ~~~~~l~~~~~d~~i~i~d~~~-------~-------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~  175 (314)
                      -....|+++..||.+.+|..+.       .             +|......+.+.+.++++  ....+++++.....|.+
T Consensus       112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            3456788889999999996531       1             122333445567888888  77788888888888888


Q ss_pred             EeCCCC--C-ceeeeeecccceEEEEECCCC-----C-EEEEeeCCCeEEEeeC
Q 021319          176 LTYPSL--R-PLDTVVAHTAGCYCIAIDPMG-----R-YFAVGSADSLVSLWDI  220 (314)
Q Consensus       176 ~~~~~~--~-~~~~~~~~~~~i~~i~~~~~~-----~-~l~t~~~dg~i~vwd~  220 (314)
                      +-+...  + ....-..+...|.+++|-++.     . .+++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            765431  1 111112356678999986543     2 6788889999888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=87.68  E-value=34  Score=34.71  Aligned_cols=18  Identities=22%  Similarity=0.405  Sum_probs=13.0

Q ss_pred             EEEEEccCCcEEEEecCC
Q 021319          237 RTISFSHTGDYIASASED  254 (314)
Q Consensus       237 ~~~~~sp~~~~l~s~s~d  254 (314)
                      .+|+++|+|...++-+..
T Consensus       596 r~Iavg~~G~lyvaEsD~  613 (1899)
T KOG4659|consen  596 RDIAVGTDGALYVAESDG  613 (1899)
T ss_pred             hceeecCCceEEEEeccc
Confidence            678899988776655543

>PRK13684 Ycf48-like protein; Provisional

Probab=87.50  E-value=17  Score=31.14  Aligned_cols=264  Identities=11%  Similarity=0.103  Sum_probs=119.3

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeE-EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      ...+++|.|..+.+-++.|. ++.  ||.....+..+.... .+.....++.++.+.+.  +.++. +..+.|.. ..+.
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~--~~~~~-G~~g~i~~-S~Dg  117 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD--EGWIV-GQPSLLLH-TTDG  117 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC--cEEEe-CCCceEEE-ECCC
Confidence            55789999985555565554 554  454433332332211 11112234667777543  33433 34444322 1222


Q ss_pred             CceeeeEE----ecCceEEEEEccCCCEEEEEeCCCcEEEE-Ec-cCCeEeeeeccCcceeeEEeccCCCeEEEEcCCce
Q 021319           99 GKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTIL-DV-RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT  172 (314)
Q Consensus        99 ~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~-d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  172 (314)
                      |+--....    .......+.....+..++++ ..+.+..- |. ++.+.+..-. ...+..+...+++..+ +....|.
T Consensus       118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g-~~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v-~~g~~G~  194 (334)
T PRK13684        118 GKNWTRIPLSEKLPGSPYLITALGPGTAEMAT-NVGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYV-AVSSRGN  194 (334)
T ss_pred             CCCCeEccCCcCCCCCceEEEEECCCcceeee-ccceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEE-EEeCCce
Confidence            22111111    11122222222222233333 33332221 21 2222222111 2346677777776544 4444454


Q ss_pred             EEEEeCCCCCceeee-eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee----cccCeEEEEEccCCcE
Q 021319          173 VEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK----LEWPVRTISFSHTGDY  247 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~  247 (314)
                      +..-.....+.-... ..-...++.+.+.++++.++++ ..|.+++=..+.+..-+....    ....+.++.+.|++..
T Consensus       195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~  273 (334)
T PRK13684        195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI  273 (334)
T ss_pred             EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence            433211111111111 1223467899999999877765 456654322333322111111    1235778899998876


Q ss_pred             EEEecCCceEEEEECCCCCeEEEEec----cCccceeEEcCCCCeeEEEecCCc
Q 021319          248 IASASEDLFIDISNVHTGRTVHQIPC----RAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~~~~~~~~~~----~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      ++ ++.+|.+... ...|+.-...+.    ....+.+.|..++..+|. |..+.
T Consensus       274 ~~-~G~~G~v~~S-~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~  324 (334)
T PRK13684        274 WA-GGGNGTLLVS-KDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGV  324 (334)
T ss_pred             EE-EcCCCeEEEe-CCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCce
Confidence            65 5556655433 334443333221    124677888777777664 43443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.75  E-value=17  Score=30.18  Aligned_cols=182  Identities=14%  Similarity=0.187  Sum_probs=100.7

Q ss_pred             EEEEccCCC-EEEEEeCCCc-EEEEEccCCeEeeeeccC---cceeeEEeccCCCeEEEEcCC-----ceEEEEeCC-CC
Q 021319          113 NITYKPDGT-HIAVGNRDDE-LTILDVRKFKPIHRRKFG---YEVNEIAWNMTGEMFFLTTGN-----GTVEVLTYP-SL  181 (314)
Q Consensus       113 ~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~-~~  181 (314)
                      .++++|... -++.+-.-|+ ..++|....+........   .---.-.|+++|.++...-.+     |.+-+|+.. ..
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            355555433 3444444444 456676554433221110   011123588999988877543     788889875 34


Q ss_pred             CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEe-e-------CCCcEEEEE---------eeec-------ccCeE
Q 021319          182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW-D-------ISEMLCVRT---------FTKL-------EWPVR  237 (314)
Q Consensus       182 ~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vw-d-------~~~~~~~~~---------~~~~-------~~~v~  237 (314)
                      +.+.++..|.-..-.+.+.+||+.++.+  +|.|... |       +++++.-..         +++|       ...+.
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR  229 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR  229 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEe--CCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence            5566777888888899999999998876  4446555 2       222221111         1122       23477


Q ss_pred             EEEEccCCcEEEEecC-----CceEEEEECCCCCeEEEEecc--------CccceeEEcCCCCeeEEEecCC
Q 021319          238 TISFSHTGDYIASASE-----DLFIDISNVHTGRTVHQIPCR--------AAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       238 ~~~~sp~~~~l~s~s~-----d~~v~v~~~~~~~~~~~~~~~--------~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      .++..+||..++-.=-     |.---|=....|+.+.-+...        .=|-+|+-|.+..+++..+--+
T Consensus       230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~G  301 (366)
T COG3490         230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRG  301 (366)
T ss_pred             eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCC
Confidence            7888888887764421     222222233345555444321        1255777776666665555443

>PF01011 PQQ: PQQ enzyme repeat family

Probab=86.44  E-value=3.6  Score=22.23  Aligned_cols=29  Identities=10%  Similarity=0.243  Sum_probs=23.9

Q ss_pred             EEEecCCceEEEEECCCCCeEEEEeccCc
Q 021319          248 IASASEDLFIDISNVHTGRTVHQIPCRAA  276 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~~~~~~~~~~~~~  276 (314)
                      +..++.||.+.-.|..+|+.+..+.....
T Consensus         3 v~~~~~~g~l~AlD~~TG~~~W~~~~~~~   31 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGKVLWKFQTGPP   31 (38)
T ss_dssp             EEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred             EEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence            45569999999999999999998875443

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>smart00564 PQQ beta-propeller repeat

Probab=85.85  E-value=2.4  Score=21.81  Aligned_cols=25  Identities=16%  Similarity=0.108  Sum_probs=21.3

Q ss_pred             EEEEecCCceEEEEECCCCCeEEEE
Q 021319          247 YIASASEDLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       247 ~l~s~s~d~~v~v~~~~~~~~~~~~  271 (314)
                      .++.++.++.+...|..+|+.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777889999999999999987654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.06  E-value=21  Score=31.69  Aligned_cols=100  Identities=9%  Similarity=0.086  Sum_probs=69.0

Q ss_pred             cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee----eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE
Q 021319          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV----VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (314)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~  225 (314)
                      .++.++.|+++.+.+++.-.+..+.++.....++....    ...+..|....|+.+ +-+|.-...| +.+|.+...+.
T Consensus        67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr  144 (657)
T KOG2377|consen   67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR  144 (657)
T ss_pred             CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh
Confidence            47889999999999999999999999988554443222    223445777888765 5566565454 88888765543


Q ss_pred             -EEEeeecccCeEEEEEccCCcEEEEe
Q 021319          226 -VRTFTKLEWPVRTISFSHTGDYIASA  251 (314)
Q Consensus       226 -~~~~~~~~~~v~~~~~sp~~~~l~s~  251 (314)
                       ++..+.+...|.--.|.|+.+.+.-+
T Consensus       145 slRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  145 SLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             hhhhhhhcccCccEEEEccccceEeee
Confidence             34445566677778888887754433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=85.01  E-value=25  Score=30.60  Aligned_cols=103  Identities=11%  Similarity=0.046  Sum_probs=51.0

Q ss_pred             ccEEEEEECCCCCEEEEee-----------CCC-cEEEeecCCCCCCceee-EEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319           21 KKVHSVAWNCTGTKLASGS-----------VDQ-TARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASG   87 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~-----------~D~-~v~iw~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~   87 (314)
                      .....++|.++|.++++-.           ..+ .|.+++-.... +.... ..+.........+++.+++  ++++ ..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd-G~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~   89 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD-GKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TP   89 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC-CCcceeEEeecCCCCccceeEecCC--EEEe-CC
Confidence            3567889999999887753           122 56665432211 12111 1222223345778887653  5544 34


Q ss_pred             CCcEEEEeCCCC-----ceeeeEE-ec-------CceEEEEEccCCCEEEEEe
Q 021319           88 DKTVRLWDARSG-----KCSQQAE-LS-------GENINITYKPDGTHIAVGN  127 (314)
Q Consensus        88 D~~v~iwd~~~~-----~~~~~~~-~~-------~~~~~~~~~~~~~~l~~~~  127 (314)
                      ..-.++.|....     +...... +.       .....+.+.|||.+.++-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            433334454321     1111111 11       1133588899998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=84.70  E-value=40  Score=32.66  Aligned_cols=149  Identities=15%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEecCce-------------EEEEEcc--CCCEEEEEeC----------CCcEEE
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAELSGEN-------------INITYKP--DGTHIAVGNR----------DDELTI  134 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~----------d~~i~i  134 (314)
                      ..|+.++.|+.+.-.|..+|+....+...+..             ....-.|  .+..+++|+.          +|.|.-
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            46778889999999999999876543222111             0011111  1345666643          578999


Q ss_pred             EEccCCeEeeeeccCcc----------e---------eeEEeccCCCeEEEEcC------------------CceEEEEe
Q 021319          135 LDVRKFKPIHRRKFGYE----------V---------NEIAWNMTGEMFFLTTG------------------NGTVEVLT  177 (314)
Q Consensus       135 ~d~~~~~~~~~~~~~~~----------~---------~~~~~~~~~~~~~~~~~------------------~g~~~~~~  177 (314)
                      +|.++.+.+.+.....+          .         ...++.+....++...+                  .+.+...+
T Consensus       341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD  420 (764)
T TIGR03074       341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD  420 (764)
T ss_pred             EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence            99999888765432110          0         11122233333333222                  23444445


Q ss_pred             CCCCCceeeeee-cc--------cceEEEEECC-CCC---EEEEeeCCCeEEEeeCCCcEEEEE
Q 021319          178 YPSLRPLDTVVA-HT--------AGCYCIAIDP-MGR---YFAVGSADSLVSLWDISEMLCVRT  228 (314)
Q Consensus       178 ~~~~~~~~~~~~-~~--------~~i~~i~~~~-~~~---~l~t~~~dg~i~vwd~~~~~~~~~  228 (314)
                      ..+.+..-.++. |.        ....-+.+.. +|+   .++.++++|.+.+.|-++++.+..
T Consensus       421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            555544433322 11        1122223332 553   788999999999999999877643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=84.49  E-value=38  Score=32.24  Aligned_cols=36  Identities=8%  Similarity=0.159  Sum_probs=30.4

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG   55 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~   55 (314)
                      ...+++++-+|-|+-++.+..||++++|+..++.++
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs   49 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS   49 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchh
Confidence            446888888999999999999999999998765543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=83.97  E-value=16  Score=32.43  Aligned_cols=148  Identities=14%  Similarity=0.125  Sum_probs=83.8

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc---Cc----cee-eEEeccCCCeEEEEcCCceEEEEeC--CCCCc
Q 021319          114 ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GY----EVN-EIAWNMTGEMFFLTTGNGTVEVLTY--PSLRP  183 (314)
Q Consensus       114 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~----~~~-~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~  183 (314)
                      +-..|||+.+.+-+. ..+.++++.+.....+...   +.    ++. .+..-..+..+++...||-+.-|..  ++..+
T Consensus       226 llL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p  304 (733)
T COG4590         226 LLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQP  304 (733)
T ss_pred             hEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCC
Confidence            457799999987665 6788888765432222111   11    111 1111234667788889998877743  12211


Q ss_pred             ----eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEE
Q 021319          184 ----LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI  259 (314)
Q Consensus       184 ----~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v  259 (314)
                          ++.+.-...++..+.-..+.+.+++-+.+|.+.++.....+.+. ++..-....-+++||.+.+|++- ..|.+++
T Consensus       305 ~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~  382 (733)
T COG4590         305 HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSE-DQGKIRL  382 (733)
T ss_pred             cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheee-cCCceEE
Confidence                11111122334444444455678888888888888754433322 22222356778999999999753 2356777


Q ss_pred             EECCC
Q 021319          260 SNVHT  264 (314)
Q Consensus       260 ~~~~~  264 (314)
                      +.+..
T Consensus       383 ~~l~N  387 (733)
T COG4590         383 AQLEN  387 (733)
T ss_pred             EEecC
Confidence            77654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=83.83  E-value=31  Score=30.66  Aligned_cols=242  Identities=13%  Similarity=0.135  Sum_probs=119.1

Q ss_pred             cccEEEEEECC----CCCEEEEeeCCCcEEEeecCCCCCC----ceee-EEeecCC--CCEEEEEEcCCC----CCEEEE
Q 021319           20 KKKVHSVAWNC----TGTKLASGSVDQTARVWHIEPHGHG----KVKD-IELRGHA--DSVDQLCWDPKH----ADLIAT   84 (314)
Q Consensus        20 ~~~V~~v~~s~----~g~~l~s~~~D~~v~iw~~~~~~~~----~~~~-~~~~~h~--~~v~~l~~~~~~----~~~l~s   84 (314)
                      +.+|..|+.-.    .....++.-.-+.+.||.+......    .... ...-.|.  .....+++-|-+    .+.|..
T Consensus        71 ~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcV  150 (418)
T PF14727_consen   71 KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICV  150 (418)
T ss_pred             CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEE
Confidence            35677776432    2334555566678888887432211    0011 1111232  223344443332    367888


Q ss_pred             EeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC-----------------------e
Q 021319           85 ASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF-----------------------K  141 (314)
Q Consensus        85 ~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------------------~  141 (314)
                      -+.||.+.+++-+.-......+..--+-.+.|.+....+++++.+-.+..|.....                       .
T Consensus       151 QS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~  230 (418)
T PF14727_consen  151 QSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLN  230 (418)
T ss_pred             EecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccccccccc
Confidence            99999999999764433232222222335778888888888888777777753210                       0


Q ss_pred             EeeeeccCcceeeE---EeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEE-------ECCC-CCEEEEee
Q 021319          142 PIHRRKFGYEVNEI---AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA-------IDPM-GRYFAVGS  210 (314)
Q Consensus       142 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~-------~~~~-~~~l~t~~  210 (314)
                      +..++..+.++..+   ..+. ....++.....++..++...  .+...........|+.       ..++ +..+++++
T Consensus       231 ~dWs~nlGE~~l~i~v~~~~~-~~~~IvvLger~Lf~l~~~G--~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t  307 (418)
T PF14727_consen  231 PDWSFNLGEQALDIQVVRFSS-SESDIVVLGERSLFCLKDNG--SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGT  307 (418)
T ss_pred             ceeEEECCceeEEEEEEEcCC-CCceEEEEecceEEEEcCCC--eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEe
Confidence            11112222222222   2211 11222222233333333321  1111111222223322       1222 22588899


Q ss_pred             CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          211 ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       211 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      .++++.||.-.+..--..+....-.+.-..|..-...|++-+.+|.+.+.-+.|
T Consensus       308 ~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  308 HTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             cCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            999999997443322222211111233333444567888999999999887766

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=83.29  E-value=1.2  Score=42.35  Aligned_cols=79  Identities=18%  Similarity=0.233  Sum_probs=43.2

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      |..+.|-++.-++..+-.++.+++-+.++..    .. -+.+|+..+.++++-..+-..+.+                  
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~-l~rsHs~~~~d~a~~~~g~~~l~~------------------  242 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRAL----RS-LFRSHSQRVTDMAFFAEGVLKLAS------------------  242 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHH----HH-HHHhcCCCcccHHHHhhchhhhee------------------
Confidence            3333344455566666677777775554311    01 234576666665554332111111                  


Q ss_pred             eeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEc
Q 021319          103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDV  137 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  137 (314)
                                   .+|||+.++....||.+..|.+
T Consensus       243 -------------lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  243 -------------LSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             -------------eCCCCcEEEEeecCCccceeee
Confidence                         5677777777777777777764

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.07  E-value=7.8  Score=34.84  Aligned_cols=78  Identities=15%  Similarity=0.225  Sum_probs=50.8

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEe-----ecCCC---CCCceeeEE--------eecCCCCEEEEEEcCCC--CCEEE
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVW-----HIEPH---GHGKVKDIE--------LRGHADSVDQLCWDPKH--ADLIA   83 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw-----~~~~~---~~~~~~~~~--------~~~h~~~v~~l~~~~~~--~~~l~   83 (314)
                      .|..|..++.|..++-.|.+|.+.++     .-+..   +...+.+..        +....-.+..++|+|+.  ...+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            68888999999999999999987764     22110   101111111        11122246678999975  45666


Q ss_pred             EEeCCCcEEEEeCCCC
Q 021319           84 TASGDKTVRLWDARSG   99 (314)
Q Consensus        84 s~~~D~~v~iwd~~~~   99 (314)
                      .-+.|..+|+||....
T Consensus       185 iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEecCcEEEEEecCCc
Confidence            7788999999998654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.66  E-value=35  Score=34.45  Aligned_cols=136  Identities=25%  Similarity=0.267  Sum_probs=76.0

Q ss_pred             eCCCcEEEEeCCCCceeeeE-EecCceEEEE--------EccCCCEEEEEeCCCcEEEEEccCCe-------Ee--eee-
Q 021319           86 SGDKTVRLWDARSGKCSQQA-ELSGENINIT--------YKPDGTHIAVGNRDDELTILDVRKFK-------PI--HRR-  146 (314)
Q Consensus        86 ~~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~--~~~-  146 (314)
                      +.|..+.+|+..++.-.... .+...+.++.        |.|.=+++.+-..--.+.++-+.-.+       ..  ..+ 
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            35788999999874322222 2223333322        33333344433333444444322110       00  111 


Q ss_pred             ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC------CCc----------------eeeee-ecccceEEEEECCCC
Q 021319          147 KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS------LRP----------------LDTVV-AHTAGCYCIAIDPMG  203 (314)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~----------------~~~~~-~~~~~i~~i~~~~~~  203 (314)
                      ..+..+.++....+|..|++|-.+ .++-+.+..      .++                +..+. .+..+|..+.++...
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            124568888877777777665544 544332211      100                11122 355689999999999


Q ss_pred             CEEEEeeCCCeEEEeeCCC
Q 021319          204 RYFAVGSADSLVSLWDISE  222 (314)
Q Consensus       204 ~~l~t~~~dg~i~vwd~~~  222 (314)
                      ..+.+-+..|+|.+||+..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            9999999999999999965

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=82.20  E-value=51  Score=31.99  Aligned_cols=83  Identities=14%  Similarity=0.070  Sum_probs=48.0

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeee
Q 021319          111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA  189 (314)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  189 (314)
                      +.++....-+..++....||+|.++|-.+.+.+... ..+.....+.         ....-|             ..+. 
T Consensus       262 V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~---------s~~~~G-------------f~fp-  318 (753)
T PF11635_consen  262 VVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVT---------SLFQAG-------------FHFP-  318 (753)
T ss_pred             EEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccc---------cccccc-------------cccc-
Confidence            445555566778888889999999988776554432 0000000000         000000             0011 


Q ss_pred             cccceEEEEECCCCCEEEEeeCCCeEE
Q 021319          190 HTAGCYCIAIDPMGRYFAVGSADSLVS  216 (314)
Q Consensus       190 ~~~~i~~i~~~~~~~~l~t~~~dg~i~  216 (314)
                      ....+..++|||++..++.-..+|.+.
T Consensus       319 ~~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  319 CIQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             cCCCCceEEECcccceEEEEecCCCce
Confidence            111466789999999999999998866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=81.67  E-value=27  Score=28.43  Aligned_cols=109  Identities=14%  Similarity=0.152  Sum_probs=63.2

Q ss_pred             EEECCCCCEEEEeeCC-C--eEEEeeCCC----cEEE---EEeeecccCeEEEEEccCCcEEEEecCCce-EEEEECCC-
Q 021319          197 IAIDPMGRYFAVGSAD-S--LVSLWDISE----MLCV---RTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHT-  264 (314)
Q Consensus       197 i~~~~~~~~l~t~~~d-g--~i~vwd~~~----~~~~---~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~-v~v~~~~~-  264 (314)
                      -++-+||+++.+|+.. |  .+++++...    ....   ..+....|- .+...=|||+.|+.|+.+.. ...|.... 
T Consensus        72 g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY-pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~  150 (243)
T PF07250_consen   72 GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY-PTATTLPDGRVLIVGGSNNPTYEFWPPKGP  150 (243)
T ss_pred             cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc-ccceECCCCCEEEEeCcCCCcccccCCccC
Confidence            3577899999988763 2  488887543    1111   112222232 22334489999999888743 33333211 


Q ss_pred             CCeEEEE--ec----cCc--cc-eeEEcCCCCeeEEEecCCcccccccceE
Q 021319          265 GRTVHQI--PC----RAA--MN-SVEWNPKYNLLAYAGDDKNKYQADEGVF  306 (314)
Q Consensus       265 ~~~~~~~--~~----~~~--i~-~v~~~~~~~~la~~~~d~~~~~~~~~~~  306 (314)
                      ......+  ..    ...  .. -+...|+|++|+.+..+..+|....+++
T Consensus       151 ~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v  201 (243)
T PF07250_consen  151 GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTV  201 (243)
T ss_pred             CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeE
Confidence            1111111  11    011  11 5677799999999999999998887755

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=81.59  E-value=38  Score=30.08  Aligned_cols=88  Identities=13%  Similarity=0.087  Sum_probs=52.8

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCC-EEEEEEcCC-----------------
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPK-----------------   77 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~-----------------   77 (314)
                      +...+-.+.+++.+|.+++.++.+.=|.|.++|+....-   . .-.+|.-++ +.-+.....                 
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v---v-rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV---V-RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh---h-hhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            445566799999999999999988889999999865321   1 011222111 000000000                 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeeeEEe
Q 021319           78 HADLIATASGDKTVRLWDARSGKCSQQAEL  107 (314)
Q Consensus        78 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~  107 (314)
                      ..-+++-+..-|.|.||.++.|..+..+..
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            001344556678899999998877665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	314
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-19
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-19
2h9l_A	329	Wdr5delta23 Length = 329		3e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-19
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-19
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-19
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-19
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-19
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-19
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-19
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-19
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-19
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-18
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-18
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-14
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-11
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-11
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-09
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-09
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-09
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-09
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-09
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-09
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-09
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-09
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-09
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-09
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-09
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-09
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		8e-09
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		9e-09
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-08
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		4e-08
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		4e-08
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		9e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-07
3mmy_A	368	Structural And Functional Analysis Of The Interacti		2e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		8e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		4e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		1e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		5e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		6e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		7e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		7e-05
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		7e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		7e-05
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		8e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		9e-05
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		1e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-04
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-04
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		4e-04
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		4e-04
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		4e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		5e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		6e-04

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 22/307 (7%)
Query: 5   SIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
           S P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   +
Sbjct: 5   STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TI 60
Query: 63  RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGT 121
            GH   +  + W    ++L+ +AS DKT+++WD  SGKC +  +  S       + P   
Sbjct: 61  SGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 236 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 295
Query: 292 AGDDKNK 298
           A  + +K
Sbjct: 296 AALENDK 302

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 148/321 (46%), Gaps = 30/321 (9%)
Query: 1   MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
           MG  S   K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W        K  
Sbjct: 5   MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT- 63
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
              + GH   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    
Sbjct: 64  ---ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
           + P    I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
           G   +    S + L T++         +   P G+Y    + D+ + LWD S+  C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 230 T--KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPK 285
           T  K E      +FS T G +I S SED  + I N+ T   V ++      + S   +P 
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 286 YNLLAYAGDDKNK----YQAD 302
            N++A A  + +K    Y++D
Sbjct: 294 ENIIASAALENDKTIKLYKSD 314

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 14  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 70  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 292 AGDDKNK 298
           A  + +K
Sbjct: 303 AALENDK 309

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 25  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 80
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 81  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 137
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 253
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 254 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 313
Query: 292 AGDDKNK 298
           A  + +K
Sbjct: 314 AALENDK 320

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 144/313 (46%), Gaps = 26/313 (8%)
Query: 1   MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
           MG  S   K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W        K  
Sbjct: 5   MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT- 63
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
              + GH   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    
Sbjct: 64  ---ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
           + P    I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
           G   +    S + L T++         +   P G+Y    + D+ + LWD S+  C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 230 T--KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPK 285
           T  K E      +FS T G +I S SED  + I N+ T   V ++      + S   +P 
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 286 YNLLAYAGDDKNK 298
            N++A A  + +K
Sbjct: 294 ENIIASAALENDK 306

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 32  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 87
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 88  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 144
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 260
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 261 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 320
Query: 292 AGDDKNK 298
           A  + +K
Sbjct: 321 AALENDK 327

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 30  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 85
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 86  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 142
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 259 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 318
Query: 292 AGDDKNK 298
           A  + +K
Sbjct: 319 AALENDK 325

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 22/305 (7%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 14  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 69
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +  +  S       + P    I
Sbjct: 70  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
             G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   +   
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
            S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E  
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
               +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A A 
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 294 DDKNK 298
            + +K
Sbjct: 305 LENDK 309

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 13  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 68
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 69  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 125
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 241
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 242 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 301
Query: 292 AGDDKNK 298
           A  + +K
Sbjct: 302 AALENDK 308

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 14  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 70  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   + 
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 292 AGDDKNK 298
           A  + +K
Sbjct: 303 AALENDK 309

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 22/305 (7%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 4   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 59
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +  +  S       + P    I
Sbjct: 60  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
             G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   +   
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
            S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E  
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
               +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A A 
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 294 DDKNK 298
            + +K
Sbjct: 295 LENDK 299

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 22/305 (7%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 9   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 64
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +  +  S       + P    I
Sbjct: 65  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
             G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   +   
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
            S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E  
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 239
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
               +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A A 
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Query: 294 DDKNK 298
            + +K
Sbjct: 300 LENDK 304

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 22/305 (7%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 8   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +  +  S       + P    I
Sbjct: 64  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
             G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   +   
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
            S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E  
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
               +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A A 
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 294 DDKNK 298
            + +K
Sbjct: 299 LENDK 303

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 22/305 (7%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++ ++T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 8   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +  +  S       + P    I
Sbjct: 64  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
             G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G   +   
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
            S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E  
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
               +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A A 
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 294 DDKNK 298
            + +K
Sbjct: 299 LENDK 303

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 142/311 (45%), Gaps = 22/311 (7%)
Query: 1   MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
           MG  S   K  ++ ++T  GH K V SV ++  G  LA+ S D+  ++W        K  
Sbjct: 5   MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKT- 63
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYK 117
              + GH   +  + W    ++L+ +AS DKT+++WD  SGKC +  +  S       + 
Sbjct: 64  ---ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 118 PDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172
           P    I  G+ D+ + I DV+  K     P H       V+ + +N  G +   ++ +G 
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGL 175
Query: 173 VEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT- 230
             +    S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T 
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 231 -KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYN 287
            K E      +FS T G +I S SED  + I N+ T   V ++      + S   +P  N
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 288 LLAYAGDDKNK 298
           ++A A  + +K
Sbjct: 296 IIASAALENDK 306

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 141/305 (46%), Gaps = 22/305 (7%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++  +T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 11  PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 66
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +  +  S       + P    I
Sbjct: 67  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 124 AVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
             G+ D+ + I DV+     K  P H       V+ + +N  G +   ++ +G   +   
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
            S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E  
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
               +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A A 
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 294 DDKNK 298
            + +K
Sbjct: 302 LENDK 306

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 26/307 (8%)
Query: 7   PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
           P K  ++  +T  GH K V SV ++  G  LAS S D+  ++W       GK +   + G
Sbjct: 11  PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 66
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
           H   +  + W    ++L+ +AS DKT+++WD  SGKC +   L G +  +    + P   
Sbjct: 67  HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 123
Query: 122 HIAVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
            I  G+ D+ + I DV+     K  P H       V+ + +N  G +   ++ +G   + 
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
              S + L T++         +   P G+Y    + D+ + LWD S+  C++T+T  K E
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNE 239
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
                 +FS T G +I S SED  + I N+ T   V ++      + S   +P  N++A 
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Query: 292 AGDDKNK 298
           A  + +K
Sbjct: 300 AALENDK 306

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 18/283 (6%)
Query: 19  HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
           H   V  VA++  G  +AS S D+T ++W+     +G++    L GH+ SV  + + P  
Sbjct: 15  HSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVAFSPD- 68
Query: 79  ADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNRDDELTIL 135
              IA+AS DKTV+LW+ R+G+  Q   L+G + +   + + PDG  IA  + DD+   L
Sbjct: 69  GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKL 124
Query: 136 DVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC 194
             R  + +         V  +A++  G+     + + TV++      + L T+  H++  
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSV 183
Query: 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 254
           + +A  P G+  A  S D  V LW+ +  L ++T T     VR ++FS  G  IASAS+D
Sbjct: 184 WGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDD 242
Query: 255 LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 296
             + + N   G+ +  +    +++N V + P    +A A DDK
Sbjct: 243 KTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 248
           AH++    +A  P G+  A  S D  V LW+ +  L ++T T     V  ++FS  G  I
Sbjct: 14  AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTI 72
Query: 249 ASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 296
           ASAS+D  + + N   G+ +  +    +++  V ++P    +A A DDK
Sbjct: 73  ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 119/287 (41%), Gaps = 33/287 (11%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
           +GH+  V  V ++   + + S S D T +VW  E     +     L+GH DSV  + +D 
Sbjct: 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT----LKGHTDSVQDISFD- 159
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTIL 135
               L+A+ S D T++LWD +  +C +       N++ ++  P+G HI   +RD  + + 
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 136 DVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC 194
           +V+    +       E V  +  N  G +    + + TV V    +      +  H    
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 195 YCIAIDPMGRYFAV--------------------GSADSLVSLWDISEMLCVRTFTKLEW 234
            CI+  P   Y ++                    GS D  + +WD+S  +C+ T    + 
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339
Query: 235 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVE 281
            VR + F   G +I S ++D  + + +    R      C   +N+ E
Sbjct: 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR------CMKTLNAHE 380

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 102/253 (40%), Gaps = 46/253 (18%)
Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT 121
           L GH   V ++ + P  + ++ +AS D T+++WD  +G                   D  
Sbjct: 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETG-------------------DFE 143
Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL 181
               G+ D                      V +I+++ +G++    + + T+++  +   
Sbjct: 144 RTLKGHTDS---------------------VQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTIS 240
             + T+  H      ++I P G +    S D  + +W++    CV+TFT   EW VR + 
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW-VRMVR 241
Query: 241 FSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPK--YNLLAYAGDDKN 297
            +  G  IAS S D  + +  V T     ++   R  +  + W P+  Y+ ++ A   + 
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 301
Query: 298 KYQADEGVFRIYG 310
           K     G F + G
Sbjct: 302 KKSGKPGPFLLSG 314

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 59/307 (19%)
Query: 9   KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS 68
           +NL++         + SV ++  G  LA+G+ D+  R+W IE   + K+  I L+GH   
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE---NRKIVMI-LQGHEQD 167
Query: 69  VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP-DGTHIAVGN 127
           +  L + P   D + + SGD+TVR+WD R+G+CS    +      +   P DG +IA G+
Sbjct: 168 IYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV 187
            D  + + D                         E  FL      VE L   +    ++ 
Sbjct: 227 LDRAVRVWD------------------------SETGFL------VERLDSEN----ESG 252
Query: 188 VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM------------LCVRTFTKLEWP 235
             H    Y +     G+    GS D  V LW++                C  T+   +  
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 236 VRTISFSHTGDYIASASEDLFIDISNVHTGRTV-------HQIPCRAAMNSVEWNPKYNL 288
           V +++ +   +YI S S+D  +   +  +G  +       + +   A  N     P+YN+
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372
Query: 289 LAYAGDD 295
            A    D
Sbjct: 373 FATGSGD 379

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 142/331 (42%), Gaps = 51/331 (15%)
Query: 15  EYTGHKKKVHSVAWNC-----TGTKLASGSVDQTARVWHIEPHGHGK-----VKDIELRG 64
           + TGH+  V S+A  C     T TK+ S S D+T   W   P  H       + D  L G
Sbjct: 8   QLTGHRGWVTSLA--CPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEG 65
Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGT 121
           H+  V  +     + +   +AS D ++RLW+ ++G+C  Q +  G     +++ + PD  
Sbjct: 66  HSAFVSDVALS-NNGNFAVSASWDHSLRLWNLQNGQC--QYKFLGHTKDVLSVAFSPDNR 122
Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYE---VNEIAWNMTGEMFFLTTG--NGTVEVL 176
            I  G RD+ L + +V K + +H    G     V+ + ++ + +   + +G  +  V+V 
Sbjct: 123 QIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV 236
              + R +  +  HT     + + P G   A    D +  LWD+++   +        P+
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA-PI 240
Query: 237 RTISFSHTGDYIASASE-----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK 285
             I FS    ++ +A+E           D+ ++++  H G             S +  P+
Sbjct: 241 NQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQG-------------SKKIVPE 287
Query: 286 YNLLAYAGDDKNKYQA-DEGVFRIYGF-ENA 314
              +A++ D    Y    + V R++G  ENA
Sbjct: 288 CVSIAWSADGSTLYSGYTDNVIRVWGVSENA 318

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 132/307 (42%), Gaps = 34/307 (11%)
Query: 35  LASGSVDQTARVWHI---EPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91
           L SGS D+T  +W +   E +G+  +    L GH   V  L    ++   I++ S DKT+
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTL 100
Query: 92  RLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVR---KFKPIHRRK 147
           RLWD R+G   ++      E  ++ + PD   I     + E+ + ++    KF    +  
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
Query: 148 FGYEVNEIAWNMTGEM---------FFLTTG-NGTVEVLTYPSLRPLDTVVAHTAGCYCI 197
               V+ + ++   +          +F + G +G ++V    + +   T  AH +    +
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHL 219
Query: 198 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW----PVRTISFSHTGDYIASASE 253
           +I P G+Y A G  D  + +WDI  +    T+ + E+     +  I+F+    ++A  + 
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDILNL----TYPQREFDAGSTINQIAFNPKLQWVAVGT- 274
Query: 254 DLFIDISNVHTGR-----TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA-DEGVFR 307
           D  + I N+ T       T+   P   A      NP+   LA+    K  +    +GV R
Sbjct: 275 DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIR 334
Query: 308 IYGFENA 314
            + FE +
Sbjct: 335 TFSFETS 341

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 13/247 (5%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQ--LCW 74
           GH+  V SV  + T    AS S+D   R+W +E   +GK +K I+    A  VD   L +
Sbjct: 78  GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE---NGKQIKSID----AGPVDAWTLAF 130
Query: 75  DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELT 133
            P  +  +AT +    V ++   SGK     +  G+ I +I Y PDG ++A G  D  + 
Sbjct: 131 SPD-SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 134 ILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
           I D+   K +H  +     +  + ++   ++    + +G +++          T+  H +
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252
               +A  P   +F   S+D  V +WD+    CV TF   +  V  + ++  G  I S  
Sbjct: 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309
Query: 253 EDLFIDI 259
           +D  I I
Sbjct: 310 DDQEIHI 316

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 14/261 (5%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                ++G+ T  +    + +   T   HT     +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 276
           E +C +TFT  E  +  I F   G+  A+ S+D    + ++   + +       I C   
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 277 MNSVEWNPKYNLLAYAGDDKN 297
           + SV ++    LL    DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 14/261 (5%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 47  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 105
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 106 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 165
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                ++G+ T  +    + +   T   HT     +++ P  R F  G+ D+   LWD+ 
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 276
           E +C +TFT  E  +  I F   G+  A+ S+D    + ++   + +       I C   
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 283
Query: 277 MNSVEWNPKYNLLAYAGDDKN 297
           + SV ++    LL    DD N
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFN 304

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 14/261 (5%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                ++G+ T  +    + +   T   HT     +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 276
           E +C +TFT  E  +  I F   G+  A+ S+D    + ++   + +       I C   
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 277 MNSVEWNPKYNLLAYAGDDKN 297
           + SV ++    LL    DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 13/218 (5%)
Query: 62  LRGHADSVDQLCWD-PKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPD 119
           L+GH + V  LC D  K    I ++S D  V +WD+ +        +     +   Y P 
Sbjct: 60  LKGHGNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 120 GTHIAVGNRDDELTI----LDVRKFKPIHRRKFGYEVNEI-AWNMT-GEMFFLT-TGNGT 172
           G  IA G  D++ ++     D  +     ++      N + A + T  +M  LT +G+GT
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFT 230
             +    S + L +   H A   C+ + P   G  F  G  D    +WD+    CV+ F 
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 231 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 268
             E  V ++ +  +GD  AS S+D    + ++   R V
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 14/261 (5%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                ++G+ T  +    + +   T   HT     +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 276
           E +C +TFT  E  +  I F   G+  A+ S+D    + ++   + +       I C   
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 277 MNSVEWNPKYNLLAYAGDDKN 297
           + SV ++    LL    DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 14/261 (5%)
Query: 48  HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
           +I+P G  +++    LRGH   +  + W    + L+ +AS D  + +WD+ +        
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
           L S   +   Y P G ++A G  D+  +I +++  +   R  R+       ++    +  
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
                ++G+ T  +    + +   T   HT     +++ P  R F  G+ D+   LWD+ 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 276
           E +C +TFT  E  +  I F   G+  A+ S+D    + ++   + +       I C   
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 277 MNSVEWNPKYNLLAYAGDDKN 297
           + SV ++    LL    DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 41/236 (17%)
Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H    +GH ++V  + W   G  LASG  D    VW   P   G V       H  +V  
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 72  LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
           + W P  ++++AT  G  D+ +R+W+  SG C    +   +  +I + P    +  G+  
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 350
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
                              G+  N++                   +  YP++  +  +  
Sbjct: 351 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 373
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 245
           HT+    + + P G   A  +AD  + LW   E+   R   + +      S  H G
Sbjct: 374 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 429

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 18/216 (8%)
Query: 88  DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
           D +V LW A SG   Q  Q E  GE I+ + +  +G ++AVG    E+ + DV++ K + 
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
                   V  ++WN     + L++G+ +  +  +    +   + T+  H+     +   
Sbjct: 195 NMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 250
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSHTGDYIAS---ASE 253
           P GR+ A G  D+LV++W  +      + ++TFT+ +  V+ +++      + +    + 
Sbjct: 251 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 310
Query: 254 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 289
           D  I I NV +G  +  +   + + S+ W+P Y  L
Sbjct: 311 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 346

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 125/321 (38%), Gaps = 44/321 (13%)
Query: 26  VAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHADSVDQLCWDPKHADLIAT 84
           +AWN  GT LAS   D+  R+W  E  G   + K +   GH  +V ++ W P   + +A+
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLSEGHQRTVRKVAWSPC-GNYLAS 78
Query: 85  ASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
           AS D T  +W            L G   E  ++ + P G  +A  +RD  + + +V +  
Sbjct: 79  ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 142 PIH----RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS--LRPLDTVVAHTAGCY 195
                        +V  + W+ + E+    + + TV++            T+  H +  +
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198
Query: 196 CIAIDPMGRYFAVGSADSLVSLW----------------DIS-EMLCV------RTFTKL 232
            +A DP G+  A  S D  V +W                D S + +C       RT   +
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI 258
Query: 233 EWPVRT--ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA-MNSVEWNPKY-NL 288
            W   T  ++ +   D I    ED   D        T H     +  +N V WNPK   L
Sbjct: 259 AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318
Query: 289 LAYAGDDKN----KYQADEGV 305
           LA   DD      KYQ  EG+
Sbjct: 319 LASCSDDGEVAFWKYQRPEGL 339

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 41/236 (17%)
Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H    +GH ++V  + W   G  LASG  D    VW   P   G V       H  +V  
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 72  LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
           + W P  ++++AT  G  D+ +R+W+  SG C    +   +  +I + P    +  G+  
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 339
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
                              G+  N++                   +  YP++  +  +  
Sbjct: 340 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 362
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 245
           HT+    + + P G   A  +AD  + LW   E+   R   + +      S  H G
Sbjct: 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 418

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 18/216 (8%)
Query: 88  DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
           D +V LW A SG   Q  Q E  GE I+ + +  +G ++AVG    E+ + DV++ K + 
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
                   V  ++WN     + L++G+ +  +  +    +   + T+  H+     +   
Sbjct: 184 NMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSHTGDYIAS---ASE 253
           P GR+ A G  D+LV++W  +      + ++TFT+ +  V+ +++      + +    + 
Sbjct: 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299
Query: 254 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 289
           D  I I NV +G  +  +   + + S+ W+P Y  L
Sbjct: 300 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 335

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 41/214 (19%)
Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H    +GH ++V  + W   G  LASG  D    VW   P   G V       H  +V  
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 72  LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
           + W P  ++++AT  G  D+ +R+W+  SG C    +   +  +I + P    +  G+  
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 259
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
                              G+  N++                   +  YP++  +  +  
Sbjct: 260 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 282
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223
           HT+    + + P G   A  +AD  + LW   E+
Sbjct: 283 HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 18/216 (8%)
Query: 88  DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
           D +V LW A SG   Q  Q E  GE I+ + +  +G ++AVG    E+ + DV++ K + 
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
                   V  ++WN     + L++G+ +  +  +    +   + T+  H+     +   
Sbjct: 104 NMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSHTGDYIAS---ASE 253
           P GR+ A G  D+LV++W  +      + ++TFT+ +  V+ +++      + +    + 
Sbjct: 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219
Query: 254 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 289
           D  I I NV +G  +  +   + + S+ W+P Y  L
Sbjct: 220 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 255

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-----LLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K ++      EV  +A++         T  G ++V +      +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
            +    AG Y  A +P          G+    G  D+++ +W +
Sbjct: 273 DLRPEFAG-YSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 16/225 (7%)
Query: 13  SREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVD 70
           SR  TGHK    S  +     T+L +GS DQT  +W +       +   E   GH   V 
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209
Query: 71  QLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAELSGENINITYKPDGTHIAVGNR 128
            L  +  +A++  + S D TVRLWD R  S          G+  ++ + PDG     G+ 
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269
Query: 129 DDELTILDVRKFK--PIHRRKFGYEVNE------IAWNMTGEMFFLTTGNGTVEV---LT 177
           D    + D+R      ++ R+     NE      +A++++G + F    NG   V   L 
Sbjct: 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329
Query: 178 YPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
              +  L T+  +H     C+ +   G     GS D  + +W  S
Sbjct: 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 21/227 (9%)
Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDG 120
           L+GH+  V  L W P+  + I +AS D  + +W+A + + +   +L     +   + P+G
Sbjct: 62  LQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 121 THIAVGNRDDELTILDVRKFK------PIHRRKFGYEVNEIAWN-MTGEMFFLTTGNGTV 173
             +A G  D   +I ++          P+ R   G++    +   +  +   L TG+G  
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 174 EVLTYP-------SLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDIS-EML 224
             + +        S+   +    HTA    ++I+ +    F  GS D+ V LWD+     
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 225 CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 271
            VRT+   E  + ++ F   G    + S+D    + ++ TG   HQ+
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQL 284

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 95  QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 149
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 207
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K ++      EV  +A++         T  G ++V +      +D
Sbjct: 208 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 266
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
            +    AG Y  A +P          G+    G  D+++ +W +
Sbjct: 267 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K ++      EV  +A++         T  G ++V +      +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
            +    AG Y  A +P          G+    G  D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K ++      EV  +A++         T  G ++V +      +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
            +    AG Y  A +P          G+    G  D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K ++      EV  +A++         T  G ++V +      +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLW 218
            +    AG Y  A +P          G+    G  D+++ +W
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 26/224 (11%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           + + GHK  V SV  +   + + SGS D+T +VW I+           L GH D V Q+ 
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74  WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
             P + AD     I +A  DK V+ W+    +   +A+  G N NI   T  PDGT IA 
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
             +D E+ + ++   K  +      EV  +A++         T  G ++V +      +D
Sbjct: 214 AGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
            +    AG Y  A +P          G+    G  D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 44/233 (18%)
Query: 32  GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
            TK  S  V   D T      EP G  +  D+ LRGH      L W+P     + +AS D
Sbjct: 149 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 207
Query: 89  KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
            T+ LWD                IN T K             E  ++D +     H    
Sbjct: 208 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 237
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
              V ++AW++  E  F +  +    ++       + +P  TV AHTA   C++ +P   
Sbjct: 238 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 205 Y-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYIASASED 254
           +  A GSAD  V+LWD+  + L + +F   +  +  + +S H    +AS+  D
Sbjct: 295 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 44/233 (18%)
Query: 32  GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
            TK  S  V   D T      EP G  +  D+ LRGH      L W+P     + +AS D
Sbjct: 147 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 205
Query: 89  KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
            T+ LWD                IN T K             E  ++D +     H    
Sbjct: 206 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 235
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
              V ++AW++  E  F +  +    ++       + +P  TV AHTA   C++ +P   
Sbjct: 236 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 205 Y-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYIASASED 254
           +  A GSAD  V+LWD+  + L + +F   +  +  + +S H    +AS+  D
Sbjct: 293 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 44/233 (18%)
Query: 32  GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
            TK  S  V   D T      EP G  +  D+ LRGH      L W+P     + +AS D
Sbjct: 145 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203
Query: 89  KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
            T+ LWD                IN T K             E  ++D +     H    
Sbjct: 204 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 233
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
              V ++AW++  E  F +  +    ++       + +P  TV AHTA   C++ +P   
Sbjct: 234 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 205 Y-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYIASASED 254
           +  A GSAD  V+LWD+  + L + +F   +  +  + +S H    +AS+  D
Sbjct: 291 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 100/238 (42%), Gaps = 16/238 (6%)
Query: 8   FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
            + +H R  T   K V+ + ++    K+ SG  D T ++W        ++    L GH  
Sbjct: 123 LQRIHCRSETS--KGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRI----LTGHTG 174
Query: 68  SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN 127
           SV  L +D +   +I T S D TVR+WD  +G+         E + +  + +   +   +
Sbjct: 175 SVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV-LHLRFNNGMMVTCS 230
Query: 128 RDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
           +D  + + D+     I  R+   G+       +   +     +G+ T++V    +   + 
Sbjct: 231 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 290
Query: 186 TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH 243
           T+  H  G  C+      R    GS+D+ + LWDI    C+R     E  VR I F +
Sbjct: 291 TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 346

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 13/219 (5%)
Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +R + GH K V SVA++    ++ SGS D+T ++W+        V+D     H++ V  +
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 177
Query: 73  CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
            + P  ++ I  + G DK V++W+  + K  +     +G    +T  PDG+  A G +D 
Sbjct: 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--------NGTVEVLTYPSLR 182
           +  + D+ + K ++    G  +N + ++         TG         G + V       
Sbjct: 238 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 297
Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
              +  A    C  +A    G+    G  D+LV +W ++
Sbjct: 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 13/219 (5%)
Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           +R + GH K V SVA++    ++ SGS D+T ++W+        V+D     H++ V  +
Sbjct: 98  TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 154
Query: 73  CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
            + P  ++ I  + G DK V++W+  + K  +     +G    +T  PDG+  A G +D 
Sbjct: 155 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 214
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--------NGTVEVLTYPSLR 182
           +  + D+ + K ++    G  +N + ++         TG         G + V       
Sbjct: 215 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 274
Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
              +  A    C  +A    G+    G  D+LV +W ++
Sbjct: 275 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 134/308 (43%), Gaps = 63/308 (20%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           T H+  +H    +  GT+LA+ S D++ +++ +   G   + D  LRGH   V Q+ W  
Sbjct: 10  TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD--LRGHEGPVWQVAWAH 67
Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPD--GTHIAVGNRDD 130
           P + +++A+ S D+ V +W   +G   +  E +G + ++    + P   G  +A G+ D 
Sbjct: 68  PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG 127
Query: 131 ELTIL--------DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
            +++L        +V+K    H        N ++W                     P++ 
Sbjct: 128 AISLLTYTGEGQWEVKKINNAHT----IGCNAVSW--------------------APAVV 163
Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE----WPVRT 238
           P  +++ H +G     I    + FA G  D+L+ LW   E    +   KLE    W VR 
Sbjct: 164 P-GSLIDHPSGQKPNYI----KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW-VRD 217
Query: 239 ISFSHT----GDYIASASEDLFIDI-------SNVHTGRTVHQIPCRAAMNSVEWNPKYN 287
           ++++ +       IAS S+D  + I       SN  + + +H+      +  V W+   N
Sbjct: 218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITAN 275
Query: 288 LLAYAGDD 295
           +LA +G D
Sbjct: 276 ILAVSGGD 283

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 114/313 (36%), Gaps = 47/313 (15%)
Query: 8   FKNLHSR--EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH-IEPHGHGKVKDIELRG 64
           F+  H +  + TGH++ +  V +N  G  L S S D +A VW+ +     G      L G
Sbjct: 18  FQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----LDG 72
Query: 65  HAD---SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT 121
           H     S+D  C+         T S D +++LWD  +G+C    +       + + P G 
Sbjct: 73  HTGTIWSIDVDCF----TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGN 128
Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL 181
           +         L ILD      + +      + EI              +     LT  S 
Sbjct: 129 YF--------LAILD-----NVMKNPGSINIYEIER------------DSATHELTKVSE 163
Query: 182 RPLDTVVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRT 238
            P+  ++ H              G+Y   G  D  +S +D+S     V +    E  +  
Sbjct: 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD 223
Query: 239 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK 298
           + FS    Y  ++S D    + +V T + + +      +N+    P    +   G  + K
Sbjct: 224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAK 283
Query: 299 ----YQADEGVFR 307
                 A+EG F 
Sbjct: 284 DVTTTSANEGKFE 296

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 130/318 (40%), Gaps = 37/318 (11%)
Query: 5   SIPFKNLHSRE-YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR 63
           ++P  +L   E YT H  +      + +G   ASG V    R+W      H  +    + 
Sbjct: 43  TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH--ILKTTIP 100
Query: 64  GHADSVDQLCWDPKHADLIATASGDKT---VRLWDARSGKCSQQAELSGENINITYKPDG 120
             +  V  + WD +   + A   G +    V L+D  +   +   +    N ++ +KP  
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN-SVDFKPSR 159
Query: 121 T-HIAVGNRDDELTILDVRKFKPIHRRKFGYE---VNEIAWNMTGEMFFLTTGNGTVEVL 176
              I  G+ D+ + I +   FK   +  FG     V+ + +N  G +F  T G+GT+ + 
Sbjct: 160 PFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Query: 177 -----TYPSLRPLDTV--VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
                T   +   D++  VAH+   + +   P G   A  SAD  + +W+++ +   +T 
Sbjct: 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
Query: 230 ---TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEW--NP 284
              T++E   + +    T   + S S + FI+  N          P   +++ V +  N 
Sbjct: 278 PVGTRIE--DQQLGIIWTKQALVSISANGFINFVN----------PELGSIDQVRYGHNK 325
Query: 285 KYNLLAYAGDDKNKYQAD 302
               L+ + D K  + AD
Sbjct: 326 AITALSSSADGKTLFSAD 343

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 99/263 (37%), Gaps = 56/263 (21%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           GH   V +    C G ++ SGS D T +VW       GK     L GH   V    W  +
Sbjct: 116 GHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVT---GKCLRT-LVGHTGGV----WSSQ 166
Query: 78  HAD-LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
             D +I + S D+T+++W+A +G+C          +   +  +   +  G+RD  L + D
Sbjct: 167 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWD 225
Query: 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYC 196
           +   + +H                                          ++ H A   C
Sbjct: 226 IETGQCLH-----------------------------------------VLMGHVAAVRC 244
Query: 197 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 256
           +  D  GR    G+ D +V +WD     C+ T       V ++ F   G ++ S S D  
Sbjct: 245 VQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTS 300
Query: 257 IDISNVHTGRTVHQIPCRAAMNS 279
           I + +V TG  +H +    ++ S
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTS 323

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 100/264 (37%), Gaps = 44/264 (16%)
Query: 19  HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPK 77
           H   V  V W+  G+K+ + S D+TA++W +  +     + I++  H   V  + W    
Sbjct: 85  HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN-----QAIQIAQHDAPVKTIHWIKAP 139
Query: 78  HADLIATASGDKTVRLWDARSGKCSQQAEL-----------------SGENINITYKPDG 120
           +   + T S DKT++ WD RS       +L                 + E   I Y+   
Sbjct: 140 NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQ--- 196
Query: 121 THIAVGNRDDELTILD---------VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG 171
               + N+  E   ++         V  FK    +  G+ +  I   +   + ++   N 
Sbjct: 197 ----LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVA--IHYINPPNP 250
Query: 172 TVEVLTYPSLRPLDTVVAHTAGCYC---IAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228
             +  T+   R   T  +     Y    IA  P+    A   +D   S WD      ++T
Sbjct: 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
Query: 229 FTKLEWPVRTISFSHTGDYIASAS 252
             +L+ P+    F+H G+  A AS
Sbjct: 311 SEQLDQPISACCFNHNGNIFAYAS 334

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 40/208 (19%)
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
           D+ LRGH      L W+   +  + +AS D TV LWD  +G                   
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP------------------ 213
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL-- 176
                       E  I+D +     H       V ++AW++  E  F +  +    ++  
Sbjct: 214 -----------KEGKIVDAKAIFTGHSAV----VEDVAWHLLHESLFGSVADDQKLMIWD 258
Query: 177 --TYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKL 232
             +  + +P   V AHTA   C++ +P   +  A GSAD  V+LWD+  + L + TF   
Sbjct: 259 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH 318
Query: 233 EWPVRTISFS-HTGDYIASASEDLFIDI 259
           +  +  + +S H    +AS+  D  +++
Sbjct: 319 KDEIFQVHWSPHNETILASSGTDRRLNV 346

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 40/208 (19%)
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
           D+ LRGH      L W+   +  + +AS D TV LWD  +G                   
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP------------------ 213
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTV----E 174
                       E  I+D +     H       V ++AW++  E  F +  +       +
Sbjct: 214 -----------KEGKIVDAKAIFTGHSAV----VEDVAWHLLHESLFGSVADDQKLXIWD 258
Query: 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKL 232
             +  + +P   V AHTA   C++ +P   +  A GSAD  V+LWD+  + L + TF   
Sbjct: 259 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH 318
Query: 233 EWPVRTISFS-HTGDYIASASEDLFIDI 259
           +  +  + +S H    +AS+  D  +++
Sbjct: 319 KDEIFQVHWSPHNETILASSGTDRRLNV 346

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 13/174 (7%)
Query: 8   FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
            KNL       H   V+   ++  G ++AS   D+T +V+  E       K ++++ H D
Sbjct: 610 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHED 665
Query: 68  SVDQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHI 123
            V  LC      D  IAT S DK V++WD+ +GK     +   E +N    T K +   +
Sbjct: 666 EV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEV 175
           A G+ D  L + D+ + K      FG+   VN   ++   E+    + +GT+ +
Sbjct: 724 ATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 50/225 (22%)
Query: 44   ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103
              +W+I+     ++K  + RGH   V  + + P  +  + TAS D+T+R+W+ +   C  
Sbjct: 871  VELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKK-VCKN 924
Query: 104  QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163
             A +  + I++ ++ + T +        L + ++R  + I  +             TG++
Sbjct: 925  SAIVLKQEIDVVFQENETMV--------LAVDNIRGLQLIAGK-------------TGQI 963
Query: 164  FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223
             +L                         A   C  + P   Y A G  D  + + ++   
Sbjct: 964  DYLPE-----------------------AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 1000
Query: 224  LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 268
                +    +  VR I F+  G  + S+SED  I + N  TG  V
Sbjct: 1001 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1045

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 13/174 (7%)
Query: 8   FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
            KNL       H   V+   ++  G ++AS   D+T +V+  E       K ++++ H D
Sbjct: 603 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHED 658
Query: 68  SVDQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHI 123
            V  LC      D  IAT S DK V++WD+ +GK     +   E +N    T K +   +
Sbjct: 659 EV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEV 175
           A G+ D  L + D+ + K      FG+   VN   ++   E+    + +GT+ +
Sbjct: 717 ATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 50/225 (22%)
Query: 44   ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103
              +W+I+     ++K  + RGH   V  + + P  +  + TAS D+T+R+W+ +   C  
Sbjct: 864  VELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKK-VCKN 917
Query: 104  QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163
             A +  + I++ ++ + T +        L + ++R  + I  +             TG++
Sbjct: 918  SAIVLKQEIDVVFQENETMV--------LAVDNIRGLQLIAGK-------------TGQI 956
Query: 164  FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223
             +L                         A   C  + P   Y A G  D  + + ++   
Sbjct: 957  DYLPE-----------------------AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993
Query: 224  LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 268
                +    +  VR I F+  G  + S+SED  I + N  TG  V
Sbjct: 994  RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 11  LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSV 69
           + +R + GH K V SVA++    ++ S S D+T ++W+    G  K    E   GH D V
Sbjct: 463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT--LGECKYTISEGGEGHRDWV 520
Query: 70  DQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAV 125
             + + P      I +AS DKTV++W+  +  C  ++ L+G       +   PDG+  A 
Sbjct: 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSN--CKLRSTLAGHTGYVSTVAVSPDGSLCAS 578
Query: 126 GNRDDELTILDVRKFKPIH 144
           G +D  + + D+ + K ++
Sbjct: 579 GGKDGVVLLWDLAEGKKLY 597

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 40/209 (19%)
Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R  TGH   V  V  +  G    SGS D   R+W +       V      GH   V  + 
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA----AGVSTRRFVGHTKDVLSVA 479
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
           +   +  ++ +AS D+T++LW+   G+C       GE               G+RD    
Sbjct: 480 FSLDNRQIV-SASRDRTIKLWNTL-GECKYTISEGGE---------------GHRD---- 518
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
            +   +F P               N         + + TV+V    + +   T+  HT  
Sbjct: 519 WVSCVRFSP---------------NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY 563
Query: 194 CYCIAIDPMGRYFAVGSADSLVSLWDISE 222
              +A+ P G   A G  D +V LWD++E
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAE 592

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 40/208 (19%)
Query: 59  DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
           D+ LRGH      L W+P  +  + +AS D T+ LWD                  I+  P
Sbjct: 170 DLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWD------------------ISAVP 211
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL-- 176
                       E  ++D +     H       V +++W++  E  F +  +    ++  
Sbjct: 212 -----------KEGKVVDAKTIFTGHTAV----VEDVSWHLLHESLFGSVADDQKLMIWD 256
Query: 177 --TYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKL 232
             +  + +P  +V AHTA   C++ +P   +  A GSAD  V+LWD+  + L + +F   
Sbjct: 257 TRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 316
Query: 233 EWPVRTISFS-HTGDYIASASEDLFIDI 259
           +  +  + +S H    +AS+  D  +++
Sbjct: 317 KDEIFQVQWSPHNETILASSGTDRRLNV 344

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           GH  +V  +AW   G +LASG  D   ++W         +       H  +V  + W P 
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIW----DARSSIPKFTKTNHNAAVKAVAWCPW 270
Query: 78  HADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV--GNRDDELT 133
            ++L+AT  G  DK +  W+A +G      +   +  ++ + P    I    G  D+ L+
Sbjct: 271 QSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330
Query: 134 I 134
           I
Sbjct: 331 I 331

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 33/225 (14%)
Query: 60  IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INI 114
           ++L GH   V  L +   H  ++ + S D+TVR+WD + G C+   E  G N     ++I
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDI 211
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172
               +  +I  G+RD+ L +  + K    P H  +  Y +                    
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL-------------------- 251
Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232
             V   P   P    V          +   G     GS D+ + +WD+++M C+   +  
Sbjct: 252 --VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM 277
              + +  + H      SAS D  I I ++  G  ++ +    A+
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 354

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 18  GHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQLC 73
           GH   V  +AW       +ASGS D T  VW I   G     +   I L GH   V  + 
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 74  WDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRDD 130
           W P   +++ +A  D  + +WD  +G    +   ++  + I ++ +  DG  I    RD 
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 131 ELTILDVRK 139
            + +++ RK
Sbjct: 199 RVRVIEPRK 207

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 18  GHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQL 72
           GH   V  +AW C      +ASGS D T  VW I   G     +   I L GH   V  +
Sbjct: 79  GHTAPVLDIAW-CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRD 129
            W P   +++ +A  D  + +WD  +G    +   ++  + I ++ +  DG  I    RD
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 130 DELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTG 169
             + +++ RK   +  +   +E    +      E   LTTG
Sbjct: 198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG 238

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 33/225 (14%)
Query: 60  IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INI 114
           ++L GH   V  L +   H  ++ + S D+TVR+WD + G C+   E  G N     ++I
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDI 211
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172
               +  +I  G+RD+ L +  + K    P H  +  Y +                    
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL-------------------- 251
Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232
             V   P   P    V          +   G     GS D+ + +WD+++  C+   +  
Sbjct: 252 --VFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM 277
              + +  + H      SAS D  I I ++  G   + +    A+
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTAL 354

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 98/262 (37%), Gaps = 65/262 (24%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G +LA+ S D+T +++ +E   H  +    L GH   V ++ W  P
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
           K   ++A+ S D  V +W   +G+ SQ                   IAV           
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQ-------------------IAV----------- 94
Query: 137 VRKFKPIHRRKFGYEVNEIAW--NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV--AHTA 192
                 +H       VN + W  +  G +  + + +G V V+ +        ++  AH  
Sbjct: 95  ----HAVH----SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 193 GCYCIAIDPM-------------GRYFAVGSADSLVSLW----DISEMLCVRTFTKLEWP 235
           G    +  P               R F  G AD+LV +W    D    +   T       
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206
Query: 236 VRTISFSHT---GDYIASASED 254
           VR +++S T     Y+AS S+D
Sbjct: 207 VRDVAWSPTVLLRSYLASVSQD 228

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 65/262 (24%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G ++A+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 7   AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
           K   ++A+ S D  V +W   +G+ SQ                   IAV           
Sbjct: 65  KFGTILASCSYDGKVMIWKEENGRWSQ-------------------IAV----------- 94
Query: 137 VRKFKPIHRRKFGYEVNEIAW--NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV--AHTA 192
                 +H       VN + W  +  G M  + + +G V V+ +        ++  AH  
Sbjct: 95  ----HAVHSAS----VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 193 GCYCIAIDPM-------------GRYFAVGSADSLVSLW----DISEMLCVRTFTKLEWP 235
           G    +  P               R F  G AD+LV +W    D    +   T       
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206
Query: 236 VRTISFSHT---GDYIASASED 254
           VR +++S T     Y+AS S+D
Sbjct: 207 VRDVAWSPTVLLRSYMASVSQD 228

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL----RGHADSVDQL 72
           T HKK + SVAW    + LA+GS D T  +W  E     +  +++L     GH + V  +
Sbjct: 55  TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGV 113
Query: 73  CWDPKHADLIATASGDKTVRLWDA-RSGK----CSQQAELSGENINITYKPDGTHIAVGN 127
            W       +AT S DK+V +W+   SG+     S   E S +  ++ + P    +A  +
Sbjct: 114 AW-SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172
Query: 128 RDDELTI 134
            DD + I
Sbjct: 173 YDDTVRI 179

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 14  REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           + + GH+  V  VA+N    +  ASG +D+T +VW +   G          G    V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73  CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
            + P      + TAS D T+++WD ++  C    E    N++   + P    I  G+ D 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVV 188
            L I +   +K       G E +  IA + TG   ++ +G +    VL+  +  P     
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP----- 305
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVS 216
                   +++DP+G+    G  ++  S
Sbjct: 306 -------TLSLDPVGKLVWSGGKNAAAS 326

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           +GH   VH V ++  G  +A+ S DQ  +V+ ++            R H  S+  + W  
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76  PKHADLIATASGDKTVRLW--DARSGKCSQQA--------ELSGENINITYKPD--GTHI 123
           P++  +IA+AS DKTV+LW  D    +CS +         +  G   ++ + P   G  +
Sbjct: 68  PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167
           A    D  L + D    +P   R         +W +T EM  L+
Sbjct: 128 ACLGNDGILRLYDA--LEPSDLR---------SWTLTSEMKVLS 160

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 27/182 (14%)
Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR------------SGKCSQQAELS- 108
           L+GH   +  + W P++  ++ATAS D  V+LWD R            +GK SQ  E + 
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 109 ----GENINITYKPDGTHIAVGNRDDELTILD--------VRKFKPIHRRKFGYEVNEIA 156
               G+   + +  DG H+     D+ + + +        V   K  +  K G +   ++
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT-VS 300
Query: 157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS 216
              + E  F+  G+ T+ V T  S   +  +  H     C       +    GS D  + 
Sbjct: 301 CGCSSEFVFVPYGS-TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359
Query: 217 LW 218
            W
Sbjct: 360 AW 361

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           +GH   VH V ++  G  +A+ S DQ  +V+ ++            R H  S+  + W  
Sbjct: 6   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 76  PKHADLIATASGDKTVRLW--DARSGKCSQQA--------ELSGENINITYKPD--GTHI 123
           P++  +IA+AS DKTV+LW  D    +CS +         +  G   ++ + P   G  +
Sbjct: 66  PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 125
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167
           A    D  L + D    +P   R         +W +T EM  L+
Sbjct: 126 ACLGNDGILRLYDA--LEPSDLR---------SWTLTSEMKVLS 158

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           GH   +  + +N T   L S S D T R+WH    G+G  ++    GH+ S+    W   
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWH---GGNGNSQNC-FYGHSQSIVSASW--V 298
Query: 78  HADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDDELTILD 136
             D + + S D +VRLW  +       + + G  I       DG   AV   D ++ + D
Sbjct: 299 GDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Query: 137 VRKFKPIHRRKFG 149
           ++K     R  +G
Sbjct: 359 LKKLNSKSRSLYG 371

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 57/258 (22%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G +LA+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 9   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 66
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 67  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW-----NMTGEMFFLTTGNGTVEVLTYPSLRP 183
           +++++ ++     PI        VN  +W        GE       NGT E         
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH------NGTKE--------- 171
Query: 184 LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW----DISEMLCVRTFTKLEWPVRTI 239
                               R F  G AD+LV +W    D    +   T       VR +
Sbjct: 172 -------------------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212
Query: 240 SFSHT---GDYIASASED 254
           ++S T     Y+AS S+D
Sbjct: 213 AWSPTVLLRSYLASVSQD 230

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
           +GH   VH V ++  G  +A+ S DQ  +V+ ++            R H  S+  + W  
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN 113
           P++  +IA+AS DKTV+LW+        Q E SG   N
Sbjct: 68  PEYGRIIASASYDKTVKLWEED----PDQEECSGRRWN 101

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 14  REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           + + GH+  V  VA+N    +  ASG +D+T +VW +   G          G    V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73  CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
            + P      + TAS D T+++WD ++  C    E    N++   + P    I  G+ D 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVV 188
            L I +   +K       G E +  IA + TG   ++ +G +    VL+  +  P     
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP----- 305
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVS 216
                   +++DP+G+    G  ++  S
Sbjct: 306 -------TLSLDPVGKLVWSGGKNAAAS 326

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 57/258 (22%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G +LA+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW-----NMTGEMFFLTTGNGTVEVLTYPSLRP 183
           +++++ ++     PI        VN  +W        GE       NGT E         
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH------NGTKE--------- 169
Query: 184 LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW----DISEMLCVRTFTKLEWPVRTI 239
                               R F  G AD+LV +W    D    +   T       VR +
Sbjct: 170 -------------------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
Query: 240 SFSHT---GDYIASASED 254
           ++S T     Y+AS S+D
Sbjct: 211 AWSPTVLLRSYLASVSQD 228

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 14  REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           + + GH+  V  VA+N    +  ASG +D+T +VW +   G          G    V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73  CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
            + P      + TAS D T+++WD ++  C    E    N++   + P    I  G+ D 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG 169
            L I +   +K       G E +  IA + TG   ++ +G
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 14  REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
           + + GH+  V  VA+N    +  ASG +D+T +VW +   G          G    V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73  CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
            + P      + TAS D T+++WD ++  C    E    N++   + P    I  G+ D 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG 169
            L I +   +K       G E +  IA + TG   ++ +G
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19  HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           HKKKV  VA N C    LA+ SVDQT ++W +     GK   +    H   V+  C+ P 
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78  HADLIATASGDKTVRLWDARSGKC 101
            A L+ T    + +R++ A    C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19  HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           HKKKV  VA N C    LA+ SVDQT ++W +     GK   +    H   V+  C+ P 
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78  HADLIATASGDKTVRLWDARSGKC 101
            A L+ T    + +R++ A    C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19  HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
           HKKKV  VA N C    LA+ SVDQT ++W +     GK   +    H   V+  C+ P 
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 308
Query: 78  HADLIATASGDKTVRLWDARSGKC 101
            A L+ T    + +R++ A    C
Sbjct: 309 GARLLTTDQKSE-IRVYSASQWDC 331

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 10/208 (4%)
Query: 15  EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
           E T      +++A +       S   D    VW +    H +    + +GH D     C 
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL----HNQTLVRQFQGHTDGAS--CI 189
Query: 75  DPKH-ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
           D  +    + T   D TVR WD R G+  QQ + + +  ++ Y P G  +AVG     + 
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
           +L V K            V  + +   G+ F  T  +  +     P    +      ++ 
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSV 309
Query: 194 CYC-IAIDPMGRYFAVGSADSLVSLWDI 220
             C I++D   +Y   GS D   +++++
Sbjct: 310 LSCDISVD--DKYIVTGSGDKKATVYEV 335

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 47/253 (18%)
Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
            H + +H    +  G + A+ S D+T +++ +E   H K+ D  L GH   V ++ W  P
Sbjct: 7   AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
           K   ++A+ S D  V +W   +G+ SQ A   +   ++N + + P   G  + V + D +
Sbjct: 65  KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188
           +++++ ++     PI        VN  +W     +      NGT E              
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASW-APATIEEDGEHNGTKE-------------- 169
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT 244
                          R F  G AD+LV +W    D    +   T       VR +++S T
Sbjct: 170 --------------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
Query: 245 ---GDYIASASED 254
                Y AS S+D
Sbjct: 216 VLLRSYXASVSQD 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.77
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.74
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.7
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.7
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.64
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.64
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.63
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.6
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.56
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.56
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.55
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.55
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.53
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.47
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.45
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.45
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.39
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.34
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.32
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.31
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.28
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.27
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.26
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.25
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.23
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.23
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.22
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.22
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.19
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.18
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.15
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.14
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.1
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.08
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.07
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.05
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.03
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.02
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.98
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.98
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.97
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.96
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.94
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.91
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.89
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.84
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.83
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.8
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.77
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.76
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.76
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.74
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.7
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.69
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.64
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.63
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.55
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.49
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.48
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.41
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.39
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.36
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.28
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.27
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.26
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.25
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.24
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.16
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.16
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.13
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.12
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.12
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.11
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.08
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.99
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.98
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.96
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.94
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.93
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.92
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.9
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.87
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.85
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.84
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.78
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.77
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.69
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.64
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.62
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.48
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.47
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.2
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.12
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.09
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.99
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.91
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.91
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.78
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.76
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.62
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.6
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.55
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.39
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.25
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.94
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.91
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.86
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.69
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.59
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.43
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.34
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.05
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.03
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.94
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.76
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.7
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.66
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.84
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.81
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.6
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.55
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.45
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.45
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.58
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.41
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.11
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.07
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.72
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.51
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.2
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.97
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.84
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	90.74
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	87.29
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.51

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-49  Score=337.08  Aligned_cols=290  Identities=20%  Similarity=0.310  Sum_probs=255.4

Q ss_pred             ccceeeecccccEEEEEECCC----CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe
Q 021319           11 LHSREYTGHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS   86 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~----g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~   86 (314)
                      +..+.+.+|.+.|++|+|+|+    +.+|+||+.|++|+||++....  ......+.+|...|.+++|++++ .++++++
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s   99 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--LDLQWSLEGHQLGVVSVDISHTL-PIAASSS   99 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECSSS-SEEEEEE
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--eeeeeeeccCCCCEEEEEECCCC-CEEEEEe
Confidence            344566799999999999985    5689999999999999986432  12334678999999999999874 6999999


Q ss_pred             CCCcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeE
Q 021319           87 GDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        87 ~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  164 (314)
                      .|++|++||+.++++....... .....++|+|++++|++++.++.+.+||++..+...... ....+.+++|+|+++.+
T Consensus       100 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence            9999999999999877766543 345579999999999999999999999999887766543 35568999999999999


Q ss_pred             EEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319          165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  244 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~  244 (314)
                      ++++.++.+++|+....+.+..+.+|...|++++|+|++++|++|+.|+.|++||+++..++.++.+|...|.+++|+|+
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD  259 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence            99999999999999988888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          245 GDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +++|++++.|+.|++||+.+++.+..+. +...|++++|+|++.+|++++.|        |+++||+.
T Consensus       260 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d--------~~i~vwd~  319 (321)
T 3ow8_A          260 DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD--------QEIHIYDC  319 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--------CCEEEEEC
T ss_pred             CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC--------CeEEEEeC
Confidence            9999999999999999999999888874 56789999999999999999977        68999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-48  Score=342.18  Aligned_cols=287  Identities=22%  Similarity=0.378  Sum_probs=257.8

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ....+.+|.++|++++|+|++++|+||+.|++|+|||+++..    ....+.+|.+.|.+++|+|++ ++|++|+.|++|
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~----~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i  174 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFDHSG-KLLASCSADMTI  174 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC----CCEEECCCSSCEEEEEECTTS-SEEEEEETTSCC
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeE
Confidence            345688999999999999999999999999999999997643    223578999999999999974 699999999999


Q ss_pred             EEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcC
Q 021319           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      ++||+.++++...+.. ...+.+++|+|++++|++++.|+.|++||+++.+.+.... +...+..+.+++++..+++++.
T Consensus       175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~  254 (410)
T 1vyh_C          175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN  254 (410)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence            9999998887766543 4456789999999999999999999999999988776653 4556889999999999999999


Q ss_pred             CceEEEEeCCCCCceeeeeecccceEEEEECCC--------------------CCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM--------------------GRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--------------------~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                      ++.+++|+....+....+.+|...+.+++|+|+                    +.+|++|+.|+.|++||++++.++..+
T Consensus       255 D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~  334 (410)
T 1vyh_C          255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  334 (410)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            999999999988888888899999999999996                    678999999999999999999999999


Q ss_pred             eecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEe
Q 021319          230 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRI  308 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~  308 (314)
                      .+|...|.+++|+|++++|++|+.|+.|++||..+++.+..+. |...|++++|+|++++|++++.|        |++||
T Consensus       335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D--------~~i~v  406 (410)
T 1vyh_C          335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD--------QTVKV  406 (410)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT--------SEEEE
T ss_pred             ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC--------CcEEE
Confidence            9999999999999999999999999999999999998888775 56789999999999999999987        68999


Q ss_pred             ccc
Q 021319          309 YGF  311 (314)
Q Consensus       309 ~~~  311 (314)
                      |++
T Consensus       407 W~~  409 (410)
T 1vyh_C          407 WEC  409 (410)
T ss_dssp             EC-
T ss_pred             EeC
Confidence            986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-46  Score=321.66  Aligned_cols=285  Identities=15%  Similarity=0.220  Sum_probs=247.5

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+.+|.+.|++++|+|++++|+||+.|++|+|||+.+..    ....+..|...|.+++|+|++ ++|++|+.|+.+
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v  121 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN----KVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNIC  121 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC----EEEEEECSSSCEEEEEECTTS-SEEEEEETTCEE
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC----cceEeecCCccEEEEEECCCC-CEEEEEeCCCeE
Confidence            456789999999999999999999999999999999987532    334577899999999999974 799999999999


Q ss_pred             EEEeCCCCc----eeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEE
Q 021319           92 RLWDARSGK----CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        92 ~iwd~~~~~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  165 (314)
                      ++||+.++.    ...... ....+.++.|.+++. +++++.|+.+++||+++.+.+.... +...+.+++|+|++..++
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence            999997653    222222 234456688887765 8899999999999999988877654 556799999999999999


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec--ccCeEEEEEcc
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--EWPVRTISFSH  243 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~sp  243 (314)
                      +++.++.+++|+....+....+.+|...|++++|+|++++|++|+.||.|++||++..+.+..+...  ...|.+++|+|
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  280 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred             EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence            9999999999999988888888999999999999999999999999999999999998877766432  34799999999


Q ss_pred             CCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          244 TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      ++++|++|+.|+.|++||..+++.+..+. |...|++++|+|++.+||++|.|        |++|||+
T Consensus       281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D--------~~i~iWd  340 (340)
T 1got_B          281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD--------SFLKIWN  340 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETT--------SCEEEEC
T ss_pred             CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCC--------ccEEecC
Confidence            99999999999999999999998887775 57789999999999999999987        5799996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.9e-48  Score=331.33  Aligned_cols=296  Identities=17%  Similarity=0.185  Sum_probs=236.3

Q ss_pred             eeeeccceeeecccccEEEEEECCCCCEEEEeeC------CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCC
Q 021319            7 PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSV------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD   80 (314)
Q Consensus         7 ~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~------D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~   80 (314)
                      +...+......+|...|++|+|||||++|+|||.      |+.|++|+...............+|...|.+++|+|++  
T Consensus        29 ~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~--  106 (357)
T 4g56_B           29 SAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK--  106 (357)
T ss_dssp             -----------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT--
T ss_pred             cccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC--
Confidence            3444444455689999999999999999999997      77899998765432222233456799999999999974  


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeE-----EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceee
Q 021319           81 LIATASGDKTVRLWDARSGKCSQQA-----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNE  154 (314)
Q Consensus        81 ~l~s~~~D~~v~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~  154 (314)
                      .+++++.|++|++||+.+++.....     .....+.+++|+|++++|++++.|+.|++||+++.+.+.... +...+.+
T Consensus       107 ~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~  186 (357)
T 4g56_B          107 GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNC  186 (357)
T ss_dssp             EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence            5668899999999999887654322     224567789999999999999999999999999998887764 4567999


Q ss_pred             EEeccCCC-eEEEEcCCceEEEEeCCCCCceeeee--ecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319          155 IAWNMTGE-MFFLTTGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFT  230 (314)
Q Consensus       155 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~  230 (314)
                      ++|++++. .+++++.++.+++|+....++...+.  .|...+++++|+|+ +.+|++|+.|+.|++||++++++++.+.
T Consensus       187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~  266 (357)
T 4g56_B          187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA  266 (357)
T ss_dssp             EEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC
T ss_pred             EEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe
Confidence            99999875 67888999999999998777665443  46677999999997 5689999999999999999998889999


Q ss_pred             ecccCeEEEEEccCC-cEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcC-CCCeeEEEecCCcccccccceEEe
Q 021319          231 KLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP-KYNLLAYAGDDKNKYQADEGVFRI  308 (314)
Q Consensus       231 ~~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~-~~~~la~~~~d~~~~~~~~~~~~~  308 (314)
                      .+..+|.+++|+|++ ++||+|+.|+.|+|||+.+++.++.+.|.+.|++|+||| ++.+||++|.|        |+++|
T Consensus       267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~D--------g~v~i  338 (357)
T 4g56_B          267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWD--------HKVLH  338 (357)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETT--------SCEEE
T ss_pred             ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCC--------CeEEE
Confidence            999999999999987 689999999999999999999888888889999999999 78999999987        68999


Q ss_pred             cccc
Q 021319          309 YGFE  312 (314)
Q Consensus       309 ~~~~  312 (314)
                      |+++
T Consensus       339 W~~~  342 (357)
T 4g56_B          339 HHLP  342 (357)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9984

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.5e-46  Score=313.83  Aligned_cols=289  Identities=18%  Similarity=0.192  Sum_probs=247.5

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ...+++.+|.+.|++++|+|++++|+||+.||+|++||+++.    .....+.+|..+|.+++|+|++ ++|++|+.|++
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~   78 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ----VEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFR   78 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC----ceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCE
Confidence            346778999999999999999999999999999999998753    2334678899999999999974 79999999999


Q ss_pred             EEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe-eee-ccCcceeeEEecc-CCCeEEE
Q 021319           91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HRR-KFGYEVNEIAWNM-TGEMFFL  166 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~-~~~~~~~~~~~~~-~~~~~~~  166 (314)
                      |++||+.++++...+..+ ..+.+++|+|++++|++++.|++|++||+++.... ... .+...+.+++|+| ++..+++
T Consensus        79 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s  158 (304)
T 2ynn_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (304)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence            999999999887766544 45678999999999999999999999999876433 332 3456789999999 5788999


Q ss_pred             EcCCceEEEEeCCCCCceeeee-ecccceEEEEECC--CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc
Q 021319          167 TTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH  243 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp  243 (314)
                      ++.|+.+++|++....+...+. .|...+..++++|  ++++|++|+.|+.|++||+++++++.++.+|...|.+++|+|
T Consensus       159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p  238 (304)
T 2ynn_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP  238 (304)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence            9999999999998776655554 5667899999987  678999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCC--eeEEEecCCcccccccceEEeccccC
Q 021319          244 TGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYN--LLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~--~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ++++|+||+.|+.|++||..+++.+..+.. ...+.+++|+|++.  ++|++++|+         +.+|.+.+
T Consensus       239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g---------~~~~~~~~  302 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG---------FTVLSLGN  302 (304)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE---------EEEEECC-
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc---------eEEEEecc
Confidence            999999999999999999999999888764 56899999999875  578777663         56776643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.6e-46  Score=318.64  Aligned_cols=289  Identities=18%  Similarity=0.228  Sum_probs=248.9

Q ss_pred             eeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC
Q 021319            9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (314)
Q Consensus         9 ~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D   88 (314)
                      .....+++.||.+.|++++|+|++++|+||+.|++|+|||..+..    ....+..|...|.+++|+|++ .++++|+.|
T Consensus        53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~----~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d  127 (354)
T 2pbi_B           53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN----KEHAVTMPCTWVMACAYAPSG-CAIACGGLD  127 (354)
T ss_dssp             CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECSSSCCCEEEECTTS-SEEEEESTT
T ss_pred             ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC----cceEEecCCCCEEEEEECCCC-CEEEEeeCC
Confidence            334567889999999999999999999999999999999986532    233567788999999999985 699999999


Q ss_pred             CcEEEEeCCCCc------eeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEecc-
Q 021319           89 KTVRLWDARSGK------CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNM-  159 (314)
Q Consensus        89 ~~v~iwd~~~~~------~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~-  159 (314)
                      +.+++|++....      ..... .....+..+.|+|++..|++++.|+++++||+++.+.+.... +...+.++.++| 
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~  207 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS  207 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence            999999986442      11222 234456679999999999999999999999999988877654 556788888877 


Q ss_pred             -CCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec--ccCe
Q 021319          160 -TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--EWPV  236 (314)
Q Consensus       160 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~--~~~v  236 (314)
                       +++.+++++.++.+++|+....+++..+.+|...|++++|+|++++|++|+.|++|++||++....+..+..+  ...+
T Consensus       208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~  287 (354)
T 2pbi_B          208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA  287 (354)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence             4689999999999999999998888888999999999999999999999999999999999988877666543  3478


Q ss_pred             EEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          237 RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       237 ~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      .+++|+|++++|++|+.|+.|++||+.+++.+..+. |...|++++|+|++++||+++.|        |+++||+
T Consensus       288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D--------~~v~vW~  354 (354)
T 2pbi_B          288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD--------HTLRVWA  354 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT--------SEEEEEC
T ss_pred             eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC--------CCEEecC
Confidence            999999999999999999999999999999887764 67789999999999999999977        6899995

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.1e-46  Score=319.38  Aligned_cols=300  Identities=23%  Similarity=0.352  Sum_probs=240.9

Q ss_pred             CCccc-eeeeeccceeeecccccEEEEEE-----CC-CCCEEEEeeCCCcEEEeecCCCCCC---ceeeEEeecCCCCEE
Q 021319            1 MGESS-IPFKNLHSREYTGHKKKVHSVAW-----NC-TGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVD   70 (314)
Q Consensus         1 ~~~~~-~~~~~~~~~~~~gH~~~V~~v~~-----s~-~g~~l~s~~~D~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~   70 (314)
                      |+|+. ++++......+.||.+.|++++|     ++ ++++|+||+.|++|++|++......   ......+.+|...|.
T Consensus         1 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~   80 (343)
T 2xzm_R            1 MADNSSLDIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS   80 (343)
T ss_dssp             -----CEEEEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEE
T ss_pred             CCCccccceEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceE
Confidence            34443 55666677889999999999999     76 8999999999999999998753321   123346789999999


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee---
Q 021319           71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---  146 (314)
Q Consensus        71 ~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---  146 (314)
                      +++|+|++ .++++|+.|++|++||++++++...+.. ...+.+++|+|++++|++++.|+.|++||+.........   
T Consensus        81 ~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  159 (343)
T 2xzm_R           81 DLALSQEN-CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE  159 (343)
T ss_dssp             EEEECSST-TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTT
T ss_pred             EEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeeccc
Confidence            99999974 6899999999999999999988776653 456678999999999999999999999999754433222   


Q ss_pred             ccCcceeeEEeccCC----------CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEE
Q 021319          147 KFGYEVNEIAWNMTG----------EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS  216 (314)
Q Consensus       147 ~~~~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~  216 (314)
                      .+...+.++.|+|.+          ..+++++.++.+++|+. ..+....+.+|...|++++|+|++++|++|+.||.|+
T Consensus       160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL  238 (343)
T ss_dssp             SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence            244568899999886          68999999999999994 4445566788999999999999999999999999999


Q ss_pred             EeeCCC-cEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEE--EEe------------ccCccceeE
Q 021319          217 LWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH--QIP------------CRAAMNSVE  281 (314)
Q Consensus       217 vwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~--~~~------------~~~~i~~v~  281 (314)
                      +||+.. ......+ .+...|.+++|+|++++++++ .|+.+++|++.+++...  .+.            +...|++++
T Consensus       239 iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  316 (343)
T 2xzm_R          239 IWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLA  316 (343)
T ss_dssp             EEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEE
T ss_pred             EEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEE
Confidence            999943 3333333 345679999999999988755 57789999998766543  322            335689999


Q ss_pred             EcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          282 WNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       282 ~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      |+|++++||+|+.|        |+++||+++
T Consensus       317 ~sp~g~~l~sg~~D--------g~v~~w~~~  339 (343)
T 2xzm_R          317 WNALGKKLFAGFTD--------GVIRTFSFE  339 (343)
T ss_dssp             ECSSSCCEEEEETT--------SEEEEEEEE
T ss_pred             ECCCCCeEEEecCC--------ceEEEEEEE
Confidence            99999999999977        689999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.1e-46  Score=314.95  Aligned_cols=292  Identities=18%  Similarity=0.248  Sum_probs=247.0

Q ss_pred             eccceeeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCC-ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319           10 NLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (314)
Q Consensus        10 ~~~~~~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~   87 (314)
                      ......+.||.+.|++++|+|++ ++|+||+.|++|++|++...... ......+.+|...|.+++|+|++ .+|++|+.
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~   85 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASW   85 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEET
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeC
Confidence            34556789999999999999975 89999999999999998643221 12334678999999999999974 69999999


Q ss_pred             CCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC-----
Q 021319           88 DKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-----  161 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-----  161 (314)
                      |++|++||+.++++...+.. ...+.+++|+|++.++++++.|+.+++||++.........+...+..+.+.|..     
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  165 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD  165 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence            99999999999988776653 455678999999999999999999999999765443334455678889998854     


Q ss_pred             -CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319          162 -EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       162 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  240 (314)
                       ..+++++.++.+++|++...+....+.+|...|++++|+|++++|++|+.||.|++||+.+.+++..+..+ .+|.+++
T Consensus       166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~  244 (319)
T 3frx_A          166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLA  244 (319)
T ss_dssp             CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEE
T ss_pred             ccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEE
Confidence             47899999999999999988877888899999999999999999999999999999999999988888654 5799999


Q ss_pred             EccCCcEEEEecCCceEEEEECCCCCeEEEEe---------ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          241 FSHTGDYIASASEDLFIDISNVHTGRTVHQIP---------CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       241 ~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~---------~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      |+|++.+|++++.++ +++|++..+..+..+.         +...+.+++|+|++++|++++.|        |+++||++
T Consensus       245 ~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D--------g~i~vWd~  315 (319)
T 3frx_A          245 FSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD--------NVIRVWQV  315 (319)
T ss_dssp             ECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT--------SCEEEEEE
T ss_pred             EcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC--------ceEEEEEE
Confidence            999999999888765 9999998877666553         13468899999999999999987        68999998


Q ss_pred             c
Q 021319          312 E  312 (314)
Q Consensus       312 ~  312 (314)
                      .
T Consensus       316 ~  316 (319)
T 3frx_A          316 M  316 (319)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.7e-47  Score=328.89  Aligned_cols=292  Identities=19%  Similarity=0.253  Sum_probs=245.6

Q ss_pred             eeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC
Q 021319            9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (314)
Q Consensus         9 ~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D   88 (314)
                      .....+.+.||.+.|++++|+|++++|+||+.|++|+|||+.+.    .....+.+|...|.+++|+|++ ++|++|+.|
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~----~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d  129 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS----QKTHAIKLHCPWVMECAFAPNG-QSVACGGLD  129 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT----EEEEEEECCCTTCCCCEECTTS-SEEEECCSS
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ccceEEecCCCCEEEEEECCCC-CEEEEeeCC
Confidence            34456789999999999999999999999999999999998653    2344678999999999999974 799999999


Q ss_pred             CcEEEEeCCCCce-------eeeE-EecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEeeee------ccCccee
Q 021319           89 KTVRLWDARSGKC-------SQQA-ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRR------KFGYEVN  153 (314)
Q Consensus        89 ~~v~iwd~~~~~~-------~~~~-~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~~  153 (314)
                      +.+++||+.+...       .... ........+.|.|+ +..|++++.|+++++||+++.+.+...      .+...+.
T Consensus       130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred             CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence            9999999865321       1111 12334456778886 457999999999999999988776544      2345678


Q ss_pred             eEEecc-CCCeEEEEcCCceEEEEeCC-CCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee
Q 021319          154 EIAWNM-TGEMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (314)
Q Consensus       154 ~~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~  231 (314)
                      ++.+++ +++.+++++.|+.+++|++. ..+.+..+.+|...|++++|+|++++|++|+.||+|++||++++.++..+..
T Consensus       210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~  289 (380)
T 3iz6_a          210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR  289 (380)
T ss_dssp             EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred             EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence            888876 78899999999999999987 4567778889999999999999999999999999999999999998887755


Q ss_pred             ccc-------CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE-----eccCccceeEEcCCCCeeEEEecCCccc
Q 021319          232 LEW-------PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-----PCRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       232 ~~~-------~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-----~~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      +..       .|.+++|+|+|++|++|+.|+.|++||..+++.+..+     .|.+.|++++|+|++.+|++||.|    
T Consensus       290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D----  365 (380)
T 3iz6_a          290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD----  365 (380)
T ss_dssp             CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT----
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC----
Confidence            432       3889999999999999999999999999999888776     256789999999999999999987    


Q ss_pred             ccccceEEeccccC
Q 021319          300 QADEGVFRIYGFEN  313 (314)
Q Consensus       300 ~~~~~~~~~~~~~~  313 (314)
                          |+++||+++.
T Consensus       366 ----~~i~iW~~~~  375 (380)
T 3iz6_a          366 ----KNLKIWAFSG  375 (380)
T ss_dssp             ----SCEEEEECCS
T ss_pred             ----CCEEEEecCC
Confidence                6899999853

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.5e-46  Score=318.05  Aligned_cols=285  Identities=17%  Similarity=0.210  Sum_probs=234.4

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCC-------CCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-------HGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~-------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      ..|...|.+++|+|||++|++++ |+++|+||...       .............|...|.+++|+|+  +.|++|+.||
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~l~~~s~dg  103 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE--RGILVASDSG  103 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT--TEEEEEETTS
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC--CeEEEEECCC
Confidence            46788899999999999999888 78889987421       00001111123346778999999986  4688999999


Q ss_pred             cEEEEeCCCCceeeeEE-----ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCC-
Q 021319           90 TVRLWDARSGKCSQQAE-----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGE-  162 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~-  162 (314)
                      +|++||+.+++......     +...+.+++|+|++++|++++.|+.|++||+++.+.+.... +...+.+++|++++. 
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~  183 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS  183 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence            99999999887654332     24557789999999999999999999999999998887765 567899999999985 


Q ss_pred             eEEEEcCCceEEEEeCCCCCceeeee--ecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEE
Q 021319          163 MFFLTTGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI  239 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  239 (314)
                      .+++++.|+.+++|+....++...+.  .|...+++++|+|+ +++|++|+.||.|++||+++++++.++.+|...|.++
T Consensus       184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v  263 (344)
T 4gqb_B          184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL  263 (344)
T ss_dssp             EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred             ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            67888999999999998888776653  45567899999995 5789999999999999999999999999999999999


Q ss_pred             EEccCC-cEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCC-eeEEEecCCcccccccceEEecccc
Q 021319          240 SFSHTG-DYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       240 ~~sp~~-~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +|+|++ ++|||||.|+.|++||..+++.+....|.+.|++|+|+|++. +|+++|.|        |++++|.++
T Consensus       264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D--------~~v~~w~v~  330 (344)
T 4gqb_B          264 VFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD--------HQVVHHVVP  330 (344)
T ss_dssp             EECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETT--------SCEEEEECC
T ss_pred             EEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC--------CeEEEEECC
Confidence            999998 689999999999999999988776666788999999999885 67899977        678999885

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.1e-45  Score=312.10  Aligned_cols=292  Identities=23%  Similarity=0.392  Sum_probs=236.5

Q ss_pred             cceeeecccc-cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           12 HSREYTGHKK-KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        12 ~~~~~~gH~~-~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ..+.+.+|.+ .|.+++|+|+|++|+||+.|++|+||+++.... ........+|...|.+++|+|++ ++|++|+.|++
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~   84 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-ICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDAT   84 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-EEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-eeeeeeccccCCcEEEEEECCCC-CEEEEEECCCc
Confidence            4566789988 999999999999999999999999999865311 01122336899999999999974 79999999999


Q ss_pred             EEEEeCCCCce--eeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE---eeee-ccCcceeeEEeccCCCe
Q 021319           91 VRLWDARSGKC--SQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP---IHRR-KFGYEVNEIAWNMTGEM  163 (314)
Q Consensus        91 v~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~-~~~~~~~~~~~~~~~~~  163 (314)
                      +++||...+..  ...+. ....+.+++|+|++++|++++.|+.+++||++....   +... .+...+..++|+|++..
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence            99999887653  33332 234567899999999999999999999999976532   2222 34567899999999999


Q ss_pred             EEEEcCCceEEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC---------------cEEE
Q 021319          164 FFLTTGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE---------------MLCV  226 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~---------------~~~~  226 (314)
                      +++++.++.+++|+....+  ....+.+|...|++++|+|++++|++|+.|++|++||...               ..++
T Consensus       165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~  244 (345)
T 3fm0_A          165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI  244 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred             EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence            9999999999999986653  3456788999999999999999999999999999999621               2445


Q ss_pred             EEeee-cccCeEEEEEccCCcEEEEecCCceEEEEECCCCC----eEE----EE--eccCccceeEEcCCC-CeeEEEec
Q 021319          227 RTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR----TVH----QI--PCRAAMNSVEWNPKY-NLLAYAGD  294 (314)
Q Consensus       227 ~~~~~-~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~----~~~----~~--~~~~~i~~v~~~~~~-~~la~~~~  294 (314)
                      ..+.+ |...|.+++|+|++.+|++++.|+.|++|+...+.    +..    ..  .|...|++|+|+|++ .+||++|.
T Consensus       245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~  324 (345)
T 3fm0_A          245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD  324 (345)
T ss_dssp             EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET
T ss_pred             EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC
Confidence            55555 77789999999999999999999999999987542    111    11  246789999999987 49999997


Q ss_pred             CCcccccccceEEeccccC
Q 021319          295 DKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       295 d~~~~~~~~~~~~~~~~~~  313 (314)
                      |        |+++||++++
T Consensus       325 D--------g~v~~W~~~~  335 (345)
T 3fm0_A          325 D--------GEVAFWKYQR  335 (345)
T ss_dssp             T--------SCEEEEEECC
T ss_pred             C--------CcEEEEEecC
Confidence            7        6899999854

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.8e-44  Score=303.13  Aligned_cols=290  Identities=24%  Similarity=0.403  Sum_probs=249.5

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ....+.+|.+.|++++|+|++++|++|+.|+.|++|++....    ....+.+|...|.+++|+|++ ++|++++.|+.|
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i   89 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSDS-NLLVSASDDKTL   89 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----cchhhccCCCceEEEEEcCCC-CEEEEECCCCEE
Confidence            456678999999999999999999999999999999986532    334578999999999999974 799999999999


Q ss_pred             EEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcC
Q 021319           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      ++||+.++++......+ ..+.++.|+|+++++++++.|+.+++||+++.+.+.... +...+.++.|++++..+++++.
T Consensus        90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            99999999887766543 456689999999999999999999999999888776654 4567899999999999999999


Q ss_pred             CceEEEEeCCCCCceeeee-ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCe---EEEEEccCC
Q 021319          170 NGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV---RTISFSHTG  245 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v---~~~~~sp~~  245 (314)
                      ++.+++|+....+.+..+. .+...+.+++|+|++++|++++.|+.|++||+++++++..+.+|....   ......+++
T Consensus       170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred             CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence            9999999998877666553 456679999999999999999999999999999999998888776543   223334788


Q ss_pred             cEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          246 DYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       246 ~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      .+|++|+.|+.|++||+.+++.+..+. |...|.+++|+|++++|++++.+      .+|++|||..+
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~------~d~~i~~W~~d  311 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE------NDKTIKLWKSD  311 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECT------TTCCEEEEECC
T ss_pred             cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEcc------CCccEEEecCC
Confidence            999999999999999999999888875 56789999999999999999854      24799999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-44  Score=312.00  Aligned_cols=282  Identities=21%  Similarity=0.341  Sum_probs=240.3

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecC------------------CCCEEEEEEcCCCC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH------------------ADSVDQLCWDPKHA   79 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~   79 (314)
                      +|.+.|.+++|+|||++|++|+ |++++||++....    ....+.+|                  ...|.+++|+|++ 
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-  135 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS----LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-  135 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC----EEEEECC-----------------CCCCBEEEEEECTTS-
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCC----EEEEecCccccccccccccccccCCCceeEEEEEECCCC-
Confidence            6999999999999999999977 7899999987532    11223332                  2348999999974 


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEec
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN  158 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  158 (314)
                      ++|++|+.|++|++||+.+++....+.. ...+.+++|+|+++.|++++.|+.+++||+++.+..........+..++++
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~  215 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS  215 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEE
Confidence            6999999999999999999887766543 445678999999999999999999999999998887777777788999999


Q ss_pred             c-CCCeEEEEcCCceEEEEeCCCCCceeee-------eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-------
Q 021319          159 M-TGEMFFLTTGNGTVEVLTYPSLRPLDTV-------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-------  223 (314)
Q Consensus       159 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-------  223 (314)
                      | ++..+++++.++.+++|+....+.+..+       .+|...|++++|+|++++|++|+.|+.|++||+++.       
T Consensus       216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~  295 (393)
T 1erj_A          216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  295 (393)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence            9 8899999999999999999877655544       478889999999999999999999999999998753       


Q ss_pred             -----EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcC------CCCeeEE
Q 021319          224 -----LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNP------KYNLLAY  291 (314)
Q Consensus       224 -----~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~------~~~~la~  291 (314)
                           .+...+.+|...|.+++|+|++++|++|+.|+.|++||..+++.+..+. |...|.+++|+|      ++++||+
T Consensus       296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s  375 (393)
T 1erj_A          296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT  375 (393)
T ss_dssp             -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence                 3456677888899999999999999999999999999999999888775 577899999986      6889999


Q ss_pred             EecCCcccccccceEEeccccC
Q 021319          292 AGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       292 ~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +|.|        |++|||++++
T Consensus       376 gs~D--------g~i~iW~~~~  389 (393)
T 1erj_A          376 GSGD--------CKARIWKYKK  389 (393)
T ss_dssp             EETT--------SEEEEEEEEE
T ss_pred             ECCC--------CcEEECcccc
Confidence            9988        6899999854

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-44  Score=307.54  Aligned_cols=289  Identities=20%  Similarity=0.319  Sum_probs=227.2

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEe-ec-CCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RG-HADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~-~~-h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      ..+.+.+|.+.|.+++|+|+  +|+||+.|++|++|++.....  .....+ .+ |...|.+++|+|++ ++|++|+.|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~   80 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDS   80 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--EEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTS
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--EEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCC
Confidence            35678899999999999987  999999999999999875321  112223 34 99999999999974 7999999999


Q ss_pred             cEEEEeCCCC-------ceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC----eEeeee-ccCcceeeEE
Q 021319           90 TVRLWDARSG-------KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKF----KPIHRR-KFGYEVNEIA  156 (314)
Q Consensus        90 ~v~iwd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~-~~~~~~~~~~  156 (314)
                      +|++||....       ++...+. ....+.+++|+|++++|++++.|+.+++||++..    +.+... .+...+.+++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            9999998532       2222222 3445678999999999999999999999999532    333333 3556799999


Q ss_pred             eccCCCeEEEEcCCceEEEEeCCCC--CceeeeeecccceEEEEECCC--CCEEEEeeCCCeEEEeeCCCc--------E
Q 021319          157 WNMTGEMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPM--GRYFAVGSADSLVSLWDISEM--------L  224 (314)
Q Consensus       157 ~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~i~~i~~~~~--~~~l~t~~~dg~i~vwd~~~~--------~  224 (314)
                      |+|++..+++++.|+.+++|+....  +++..+.+|...|++++|+|+  +.+|++|+.|++|++||+...        .
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            9999999999999999999987654  566778899999999999998  678999999999999998654        4


Q ss_pred             EEEEeee-cccCeEEEEEccCCcEEEEecCCceEEEEECCCCC--eEEEE--eccC-ccceeEEcC--CCCeeEEEecCC
Q 021319          225 CVRTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR--TVHQI--PCRA-AMNSVEWNP--KYNLLAYAGDDK  296 (314)
Q Consensus       225 ~~~~~~~-~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~--~~~~~--~~~~-~i~~v~~~~--~~~~la~~~~d~  296 (314)
                      +...+.. |..+|.+++|+|++ +|++++.|+.|++|+..+++  .+...  .+.. .|++++|+|  ++++||++|.| 
T Consensus       241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D-  318 (330)
T 2hes_X          241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD-  318 (330)
T ss_dssp             EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT-
T ss_pred             EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCC-
Confidence            5555554 78899999999765 89999999999999998764  23232  2344 799999999  68999999988 


Q ss_pred             cccccccceEEeccccCC
Q 021319          297 NKYQADEGVFRIYGFENA  314 (314)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~  314 (314)
                             |+++||+++++
T Consensus       319 -------g~v~~W~~~~~  329 (330)
T 2hes_X          319 -------GIVNFWSLEKA  329 (330)
T ss_dssp             -------SEEEEEEC---
T ss_pred             -------CcEEEEEeccC
Confidence                   68999999763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.5e-44  Score=327.78  Aligned_cols=293  Identities=17%  Similarity=0.274  Sum_probs=237.1

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCcee---------------------------------
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK---------------------------------   58 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~---------------------------------   58 (314)
                      ..+.+.+|...|++++|+|+|++|+||+.|++|+|||+.........                                 
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~  130 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH  130 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence            44678899999999999999999999999999999998532110000                                 


Q ss_pred             ---------eEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeC
Q 021319           59 ---------DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNR  128 (314)
Q Consensus        59 ---------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~  128 (314)
                               ...+.+|...|.+++|+|++...|++|+.|++|++||..++++...+.. ...+.+++|+|++++|++++.
T Consensus       131 v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~  210 (611)
T 1nr0_A          131 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG  210 (611)
T ss_dssp             EEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC
Confidence                     0124578888888888887655799999999999999988877665543 345678999999999999999


Q ss_pred             CCcEEEEEccCCeEeeee--------ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCcee---------------
Q 021319          129 DDELTILDVRKFKPIHRR--------KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD---------------  185 (314)
Q Consensus       129 d~~i~i~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------  185 (314)
                      |++|++||+++.+.+...        .+...+.+++|+|++..+++++.|+.+++|+....+.+.               
T Consensus       211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~  290 (611)
T 1nr0_A          211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI  290 (611)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred             CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEE
Confidence            999999999887776554        355679999999999999999999999999987544322               


Q ss_pred             ----------------------------eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-------
Q 021319          186 ----------------------------TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-------  230 (314)
Q Consensus       186 ----------------------------~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-------  230 (314)
                                                  .+.+|...|++++|+|++++|++++.|++|++||+.++.+...+.       
T Consensus       291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v  370 (611)
T 1nr0_A          291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI  370 (611)
T ss_dssp             EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred             EEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence                                        234788899999999999999999999999999987654432210       


Q ss_pred             ---------------------------------------------------------------------------ecccC
Q 021319          231 ---------------------------------------------------------------------------KLEWP  235 (314)
Q Consensus       231 ---------------------------------------------------------------------------~~~~~  235 (314)
                                                                                                 .+...
T Consensus       371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~  450 (611)
T 1nr0_A          371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN  450 (611)
T ss_dssp             EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred             EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence                                                                                       12234


Q ss_pred             eEEEEEccCCcEEEEecCCceEEEEECCCCCe--EEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          236 VRTISFSHTGDYIASASEDLFIDISNVHTGRT--VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       236 v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~--~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +.+++|+|+|++||+|+.|+.|++||+.++..  +....+...|++|+|+|++++||+++.|+        ++++|+++
T Consensus       451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~--------~v~~w~~~  521 (611)
T 1nr0_A          451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR--------KVIPYSVA  521 (611)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS--------CEEEEEGG
T ss_pred             ceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCC--------CEEEEEcC
Confidence            67899999999999999999999999987643  23345778999999999999999999885        67777764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.8e-44  Score=328.88  Aligned_cols=286  Identities=21%  Similarity=0.348  Sum_probs=236.3

Q ss_pred             eeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ..+.+|...|++++|+|++. .|+||+.|++|++||..+.    .....+.+|...|.+++|+|++ ++|++++.|++|+
T Consensus       141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~----~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~  215 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF----KFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIV  215 (611)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB----EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC----eEeeeeccccCceEEEEECCCC-CEEEEEECCCcEE
Confidence            45789999999999999987 5999999999999997642    2334678999999999999974 6999999999999


Q ss_pred             EEeCCCCceeeeEE--------ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee------------------
Q 021319           93 LWDARSGKCSQQAE--------LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR------------------  146 (314)
Q Consensus        93 iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------  146 (314)
                      +||..++++...+.        +...+.+++|+|++++|++++.|+++++||+++.+.+...                  
T Consensus       216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (611)
T 1nr0_A          216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ  295 (611)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred             EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence            99999888766552        3456778999999999999999999999999876654322                  


Q ss_pred             --------------------------ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee-------------
Q 021319          147 --------------------------KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-------------  187 (314)
Q Consensus       147 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------------  187 (314)
                                                .+...+.+++|+|+++.+++++.++.+++|+....+....+             
T Consensus       296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~  375 (611)
T 1nr0_A          296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT  375 (611)
T ss_dssp             CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE
T ss_pred             EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEE
Confidence                                      12345788999999999999999999999997543221110             


Q ss_pred             ---------------------------------------------------------------------eecccceEEEE
Q 021319          188 ---------------------------------------------------------------------VAHTAGCYCIA  198 (314)
Q Consensus       188 ---------------------------------------------------------------------~~~~~~i~~i~  198 (314)
                                                                                           ..|...+.+++
T Consensus       376 s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va  455 (611)
T 1nr0_A          376 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVA  455 (611)
T ss_dssp             CTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEE
T ss_pred             CCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEE
Confidence                                                                                 01234578999


Q ss_pred             ECCCCCEEEEeeCCCeEEEeeCCCcEE--EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC-CCeEEE--Ee-
Q 021319          199 IDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT-GRTVHQ--IP-  272 (314)
Q Consensus       199 ~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~-~~~~~~--~~-  272 (314)
                      |+|+|++||+|+.|++|++||+.....  ++. ..|...|.+++|+|+|++||+++.|+.|++|++.+ ++.+..  +. 
T Consensus       456 ~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~  534 (611)
T 1nr0_A          456 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF  534 (611)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred             EeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeee
Confidence            999999999999999999999977543  344 67888999999999999999999999999999987 554432  22 


Q ss_pred             ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          273 CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       273 ~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |...|++|+|+|++++||++|.|        |++|||+++.
T Consensus       535 H~~~V~~v~fspdg~~lasgs~D--------~~v~lW~~~~  567 (611)
T 1nr0_A          535 HTAKVACVSWSPDNVRLATGSLD--------NSVIVWNMNK  567 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTC
T ss_pred             cccceeEEEECCCCCEEEEEECC--------CcEEEEECCC
Confidence            67789999999999999999988        5789999853

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.7e-43  Score=297.87  Aligned_cols=291  Identities=18%  Similarity=0.272  Sum_probs=243.3

Q ss_pred             ccceeeecccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCC-ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC
Q 021319           11 LHSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D   88 (314)
                      ....+|.||.+.|++|+|+|+ +++|+|||.|++|+|||+...... ......+.+|...|.+++|+|++ .+|++++.|
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d  107 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWD  107 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEccc
Confidence            344568999999999999998 689999999999999999764322 23344678999999999999974 799999999


Q ss_pred             CcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee--ccCcceeeEEeccCC--Ce
Q 021319           89 KTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTG--EM  163 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~--~~  163 (314)
                      +.|++|+............ ......+.+.++++.+++++.|+.+.+||+.........  .+...+..+.+++.+  ..
T Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            9999999988876655443 344556788999999999999999999999876554332  234567788887765  46


Q ss_pred             EEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc
Q 021319          164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH  243 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp  243 (314)
                      +++++.++.+++|+....+....+.+|...|++++|+|++++|++|+.||.|++||+++.+++..+..+ ..+.+++|+|
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~  266 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSP  266 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECS
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCC
Confidence            778889999999999998888888899999999999999999999999999999999999988887654 5799999999


Q ss_pred             CCcEEEEecCCceEEEEECCCCCeEEEEe----------ccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          244 TGDYIASASEDLFIDISNVHTGRTVHQIP----------CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~----------~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ++.++ +++.|+.|++||+.++..+..+.          +...|++++|+|++++||+|+.|        |+++||+++
T Consensus       267 ~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D--------g~v~iW~~~  336 (340)
T 4aow_A          267 NRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD--------NLVRVWQVT  336 (340)
T ss_dssp             SSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT--------SCEEEEEEE
T ss_pred             CCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC--------CEEEEEeCC
Confidence            87655 56679999999999887766553          34579999999999999999987        689999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-43  Score=302.55  Aligned_cols=289  Identities=19%  Similarity=0.310  Sum_probs=254.2

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      .....+.+|.+.|++++|+|++++|++|+.|+.|++||+....    ....+.+|...|.+++|+|+ +++|++++.|+.
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~   97 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE----RLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYS   97 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC----EEEEECCCSSCEEEEEECTT-SSEEEEEETTTE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch----hhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCe
Confidence            3456689999999999999999999999999999999987532    33467889999999999997 479999999999


Q ss_pred             EEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC-----CcEEEEEccCCeEe-----------eee-ccC--cc
Q 021319           91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-----DELTILDVRKFKPI-----------HRR-KFG--YE  151 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~-----------~~~-~~~--~~  151 (314)
                      |++||+.++++.........+..++|+|+++.+++++.+     +.+.+||++.....           ... .+.  ..
T Consensus        98 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B           98 IKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             EEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            999999999988888877788899999999999999999     99999998754321           111 111  27


Q ss_pred             eeeEEeccCCCeEEEEcCCceEEEEeCCC-CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~  230 (314)
                      +.+++|+++++.++++..+|.+.+|+... .+.+..+..|...+.+++|+|++++|++++.|+.|++||++++..+..+.
T Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            88999999999999999999999999987 66777888899999999999999999999999999999999998888776


Q ss_pred             ecccCeEEEEEccCCcEEEEecCCc--------------eEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecC
Q 021319          231 KLEWPVRTISFSHTGDYIASASEDL--------------FIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       231 ~~~~~v~~~~~sp~~~~l~s~s~d~--------------~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                       +..++..++|+|+++++++++.++              .+++||..+++.+..+. +...|++++|+|++++|++++.|
T Consensus       258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  336 (369)
T 3zwl_B          258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED  336 (369)
T ss_dssp             -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence             677899999999999999999988              89999999999988876 56789999999999999999977


Q ss_pred             CcccccccceEEeccccC
Q 021319          296 KNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~  313 (314)
                              |+++||++++
T Consensus       337 --------g~v~iw~~~~  346 (369)
T 3zwl_B          337 --------GFIRLHHFEK  346 (369)
T ss_dssp             --------SEEEEEEECH
T ss_pred             --------CeEEEEECcc
Confidence                    6899999853

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-42  Score=315.43  Aligned_cols=279  Identities=27%  Similarity=0.415  Sum_probs=241.9

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+.+.+|.+.|.+++|+|++++|++++.|++|++|+.+..     ....+.+|...|.+++|+|++ .++++++.|+.|+
T Consensus       296 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-----~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~  369 (577)
T 2ymu_A          296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-----HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVK  369 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEE
T ss_pred             EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-----eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEE
Confidence            3557899999999999999999999999999999997642     223567899999999999974 6899999999999


Q ss_pred             EEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCC
Q 021319           93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      +||.. ++...... ....+.+++|+|++++|++++.|+.+++||... +.+.. ..+...+.+++|+|++..+++++.+
T Consensus       370 ~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          370 LWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             EEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence            99964 55554443 345567899999999999999999999999644 44333 3456778999999999999999999


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      +.+++|+. ..+.+..+.+|...+++++|+|++++||+++.|+.|++||. ++++++.+.+|..+|.+++|+|++++||+
T Consensus       448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  525 (577)
T 2ymu_A          448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS  525 (577)
T ss_dssp             SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             CEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEE
Confidence            99999996 44566778899999999999999999999999999999995 67788899999999999999999999999


Q ss_pred             ecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          251 ASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      ++.|+.|++||. +++.+..+. |...|++++|+|++++|+++|.|        |+++||+
T Consensus       526 ~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D--------~~i~~Wd  577 (577)
T 2ymu_A          526 ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD--------KTVKLWN  577 (577)
T ss_dssp             EETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT--------SCEEEEC
T ss_pred             EECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC--------CEEEEeC
Confidence            999999999995 677777765 57799999999999999999988        5788996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.3e-43  Score=302.60  Aligned_cols=286  Identities=14%  Similarity=0.169  Sum_probs=234.2

Q ss_pred             ceeeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           13 SREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      .+.+.+|.+.|++++|+|++ ++|++|+.|+.|+||++....  ........+|...|.+++|+|.++++|++++.|+.|
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            35678999999999999999 999999999999999997543  223334457999999999999656799999999999


Q ss_pred             EEEeCCCCceeeeEEec---CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCC-eEEE
Q 021319           92 RLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGE-MFFL  166 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~  166 (314)
                      ++||+.+..........   ..+.+++|+|++++|++++.|+.|.+||++ .+++... .+...+.+++|+|+++ .+++
T Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred             EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence            99999864332222222   446789999999999999999999999995 4444443 4567899999999999 8999


Q ss_pred             EcCCceEEEEeCCC----CCceeeeeecccceEEEEECC-CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc--------
Q 021319          167 TTGNGTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLE--------  233 (314)
Q Consensus       167 ~~~~g~~~~~~~~~----~~~~~~~~~~~~~i~~i~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--------  233 (314)
                      ++.++.+++|+...    ...+..+ .|...+++++|+| ++++|++++.|+.|++||++++.++..+..+.        
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT  301 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred             EeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence            99999999999876    3334334 7999999999999 99999999999999999998876655555432        


Q ss_pred             ---------cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe---ccCccceeEEcCCCCeeEEEecCCccccc
Q 021319          234 ---------WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP---CRAAMNSVEWNPKYNLLAYAGDDKNKYQA  301 (314)
Q Consensus       234 ---------~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~---~~~~i~~v~~~~~~~~la~~~~d~~~~~~  301 (314)
                               ..+..++|+|++++  +++.|+.|++||+.+++.+..+.   +...+..++|+|++++||+++ |      
T Consensus       302 ~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d------  372 (383)
T 3ei3_B          302 PIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G------  372 (383)
T ss_dssp             CCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T------
T ss_pred             ceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-C------
Confidence                     24555778888877  88999999999999999988886   345677789999999999997 6      


Q ss_pred             ccceEEeccccC
Q 021319          302 DEGVFRIYGFEN  313 (314)
Q Consensus       302 ~~~~~~~~~~~~  313 (314)
                        |.++||++++
T Consensus       373 --~~i~iw~~~~  382 (383)
T 3ei3_B          373 --FNILIWNRED  382 (383)
T ss_dssp             --TEEEEEECC-
T ss_pred             --CcEEEEecCC
Confidence              5899999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.3e-43  Score=304.05  Aligned_cols=291  Identities=16%  Similarity=0.148  Sum_probs=248.2

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC--ceeeEEeecCCCCEEEEEEcCC---CC---CEEE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPK---HA---DLIA   83 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~---~~---~~l~   83 (314)
                      ..+.+.+|.+.|++++|+|  ++|++|+.||.|++|+++.....  ......+.+|...|.+++|+|+   ++   .+|+
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            4566789999999999999  89999999999999999764310  1123467799999999999986   24   5899


Q ss_pred             EEeCCCcEEEEeCCCCce-----eeeEEec------CceEEEEEc----cCCCE-EEEEeCCCcEEEEEccC------Ce
Q 021319           84 TASGDKTVRLWDARSGKC-----SQQAELS------GENINITYK----PDGTH-IAVGNRDDELTILDVRK------FK  141 (314)
Q Consensus        84 s~~~D~~v~iwd~~~~~~-----~~~~~~~------~~~~~~~~~----~~~~~-l~~~~~d~~i~i~d~~~------~~  141 (314)
                      +++.|+.|++||+.+++.     .......      ..+.+++|+    |+++. |++++.|+.+.+||++.      .+
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            999999999999988775     4444433      667789999    99999 99999999999999987      44


Q ss_pred             Eee-----eec--------cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeee---c---ccceEEEEECCC
Q 021319          142 PIH-----RRK--------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA---H---TAGCYCIAIDPM  202 (314)
Q Consensus       142 ~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~---~~~i~~i~~~~~  202 (314)
                      .+.     ...        +...+.+++|+|++ .+++++.++.+++|+....+++..+..   |   ...+.+++|+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~  244 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  244 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence            333     332        35678999999999 999999999999999998888888888   8   899999999999


Q ss_pred             CCEEEEeeCC---CeEEEeeCCCcEEEEEeee-------------cccCeEEEEEccCCcEEEEecCCceEEEEECCCCC
Q 021319          203 GRYFAVGSAD---SLVSLWDISEMLCVRTFTK-------------LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       203 ~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~-------------~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~  266 (314)
                      +++|++++.|   |.|++||+++++.+..+..             |..+|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            9999999999   9999999999999999888             89999999999999999999999999999999999


Q ss_pred             eEEEEe-------c---------------cCccceeEEcCCC----------CeeEEEecCCcccccccceEEeccccC
Q 021319          267 TVHQIP-------C---------------RAAMNSVEWNPKY----------NLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       267 ~~~~~~-------~---------------~~~i~~v~~~~~~----------~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      .+..+.       +               ...|++++|+|++          ++|++++.|        |.++||+++.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d--------g~i~iw~~~~  395 (397)
T 1sq9_A          325 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD--------RSIRWFREAG  395 (397)
T ss_dssp             EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT--------TEEEEEEEEC
T ss_pred             eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC--------CcEEEEEcCC
Confidence            988887       3               6789999999998          799999977        6899999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.9e-42  Score=319.38  Aligned_cols=289  Identities=19%  Similarity=0.308  Sum_probs=242.7

Q ss_pred             eeeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCC-ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+|.+.|++|+|+|++ ++|+|||.|++|++|++...... ......+.+|...|.+++|+|++ .+|+||+.|++|
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v  454 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGEL  454 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcE
Confidence            4578999999999999875 78999999999999998753321 22344688999999999999974 799999999999


Q ss_pred             EEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee----ccCcceeeEEeccCC--CeE
Q 021319           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIAWNMTG--EMF  164 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~  164 (314)
                      ++||+.++.+...+.. ...+.+++|+|+++.|++++.|++|++||..........    .+...+.++.|+|++  ..+
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  534 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI  534 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence            9999999987766643 455678999999999999999999999998665433221    234468999999987  578


Q ss_pred             EEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319          165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  244 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~  244 (314)
                      ++++.++.+++|++...+....+.+|...|++++|+|++++|++|+.||.|++||+.+++++..+.. ...+.+++|+|+
T Consensus       535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~  613 (694)
T 3dm0_A          535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPN  613 (694)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSS
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCC
Confidence            9999999999999998888888889999999999999999999999999999999999988877654 457999999999


Q ss_pred             CcEEEEecCCceEEEEECCCCCeEEEEecc--------------------CccceeEEcCCCCeeEEEecCCcccccccc
Q 021319          245 GDYIASASEDLFIDISNVHTGRTVHQIPCR--------------------AAMNSVEWNPKYNLLAYAGDDKNKYQADEG  304 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~--------------------~~i~~v~~~~~~~~la~~~~d~~~~~~~~~  304 (314)
                      +.+|++++. +.|++||+.+++.+..+...                    ..+++++|+|++.+|++++.|        |
T Consensus       614 ~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D--------g  684 (694)
T 3dm0_A          614 RYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD--------G  684 (694)
T ss_dssp             SSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT--------S
T ss_pred             CcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC--------C
Confidence            998887765 45999999998877665311                    126789999999999999987        6


Q ss_pred             eEEeccccC
Q 021319          305 VFRIYGFEN  313 (314)
Q Consensus       305 ~~~~~~~~~  313 (314)
                      ++|||++..
T Consensus       685 ~i~iW~i~~  693 (694)
T 3dm0_A          685 VIRVWGIGR  693 (694)
T ss_dssp             EEEEEEC--
T ss_pred             eEEEEeccC
Confidence            899999863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-43  Score=308.01  Aligned_cols=289  Identities=14%  Similarity=0.212  Sum_probs=245.8

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~   96 (314)
                      ..|...|++++|+|++++|++|+.|+.|++|++............+.+|...|.+++|+|+++++|++++.|+.|++||+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            36899999999999999999999999999999976322222445678999999999999986689999999999999999


Q ss_pred             CCCc------eeeeE----EecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEeeeecc-------CcceeeEEec
Q 021319           97 RSGK------CSQQA----ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKF-------GYEVNEIAWN  158 (314)
Q Consensus        97 ~~~~------~~~~~----~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~  158 (314)
                      .++.      .....    .....+.+++|+|+ +.++++++.|+.|.+||+++.+.+.....       ...+.+++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence            8876      32221    23445678999999 78999999999999999999888776654       5679999999


Q ss_pred             cCC-CeEEEEcCCc---eEEEEeCCCC-Cceeeee-ecccceEEEEECC-CCCEEEEeeCCCeEEEeeCCCcEEEEEeee
Q 021319          159 MTG-EMFFLTTGNG---TVEVLTYPSL-RPLDTVV-AHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (314)
Q Consensus       159 ~~~-~~~~~~~~~g---~~~~~~~~~~-~~~~~~~-~~~~~i~~i~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~  231 (314)
                      |++ ..++++..++   .+++|+.... +++..+. +|...+++++|+| ++++|++++.||.|++||+++++++..+..
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence            997 5788888888   9999999875 5667777 8999999999999 999999999999999999999999999999


Q ss_pred             cccCeEEEEEccCC-cEEEEecCCceEEEEECCCCCeEEEE---------------e---------------------cc
Q 021319          232 LEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQI---------------P---------------------CR  274 (314)
Q Consensus       232 ~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~~~~~~---------------~---------------------~~  274 (314)
                      |...|.+++|+|++ .+|++++.|+.|++|++.+++.....               .                     +.
T Consensus       304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG  383 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred             CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence            99999999999999 89999999999999999876532111               0                     24


Q ss_pred             CccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          275 AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       275 ~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      .++++++|+|++++||+++.|        |+++||+++.
T Consensus       384 ~~~~~~~~s~dg~~la~~~~d--------~~v~~w~~~~  414 (416)
T 2pm9_A          384 EPSPAAHWAFGGKLVQITPDG--------KGVSITNPKI  414 (416)
T ss_dssp             CCSCCCEEETTTEEECBCTTS--------SCBCCBCCCC
T ss_pred             CCccceEEeeCCeEEEEeCCC--------CeEEEEEecc
Confidence            567899999999999999977        6788999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.9e-41  Score=284.75  Aligned_cols=284  Identities=15%  Similarity=0.207  Sum_probs=244.2

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC-ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      ..+|.+.|++++|+|++++|++++ |+.|++|+++..... ........+|...|.+++|+|+ +++|++++.|+.|++|
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEE
Confidence            347999999999999999999999 999999999764322 1222233379999999999997 4689999999999999


Q ss_pred             eCCCCce--eeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCC
Q 021319           95 DARSGKC--SQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        95 d~~~~~~--~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      |+.+++.  ...... ......++|+|+++.+++++.++.+.+||+++.+.+.... +...+.++.|+|+++.+++++.+
T Consensus       125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence            9998773  233322 3446789999999999999999999999999988877764 46679999999999999999999


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      +.+++|+....+.+..+ .+...+.+++|+|+++++++++.++.|++||+.+.... .+..|..++.+++|+|++++|++
T Consensus       205 g~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~  282 (337)
T 1gxr_A          205 NTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             SEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEE
T ss_pred             CcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEE
Confidence            99999999887766554 46788999999999999999999999999999887654 56678889999999999999999


Q ss_pred             ecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          251 ASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      ++.|+.+++|++.+++.+....+...+++++|+|++++|++++.|        |.++||++
T Consensus       283 ~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iw~~  335 (337)
T 1gxr_A          283 TGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD--------KKATVYEV  335 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT--------SCEEEEEE
T ss_pred             ecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCC--------CeEEEEEE
Confidence            999999999999999988877788899999999999999999977        57889986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.1e-42  Score=306.85  Aligned_cols=289  Identities=17%  Similarity=0.198  Sum_probs=227.5

Q ss_pred             eeeecccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      +...+|...|++|+|+|. +++||+|+.||.|+|||++....  .....+.+|.+.|.+++|+|.++++|+||+.|++|+
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~--~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK--PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC--CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc--eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            445678999999999995 67899999999999999976432  233456799999999999997778999999999999


Q ss_pred             EEeCCCCceeeeEEecC---ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCC-eEEEEc
Q 021319           93 LWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE-MFFLTT  168 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  168 (314)
                      +||++++..........   ...+++|+|++++|++|+.|+.|.+||++......-..+...+.+++|+|.+. .+++++
T Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s  270 (435)
T 4e54_B          191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS  270 (435)
T ss_dssp             EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred             EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec
Confidence            99998765433322222   23468899999999999999999999987543222233566799999999986 566788


Q ss_pred             CCceEEEEeCCCCCcee---eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc------CeEEE
Q 021319          169 GNGTVEVLTYPSLRPLD---TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW------PVRTI  239 (314)
Q Consensus       169 ~~g~~~~~~~~~~~~~~---~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~------~v~~~  239 (314)
                      .++.+++|++...+...   ...+|...|++++|+|++++|++++.||.|++||+.++.+...+..|..      .+...
T Consensus       271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
T 4e54_B          271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA  350 (435)
T ss_dssp             TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred             CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence            99999999987655333   3357899999999999999999999999999999998877666654432      23345


Q ss_pred             EEccCCcEEEEec------------CCceEEEEECCCCCeEEEEe--ccCcccee-EEcCCCCeeEEEecCCcccccccc
Q 021319          240 SFSHTGDYIASAS------------EDLFIDISNVHTGRTVHQIP--CRAAMNSV-EWNPKYNLLAYAGDDKNKYQADEG  304 (314)
Q Consensus       240 ~~sp~~~~l~s~s------------~d~~v~v~~~~~~~~~~~~~--~~~~i~~v-~~~~~~~~la~~~~d~~~~~~~~~  304 (314)
                      .|+|++.++++++            .++.|++||.++++.+..+.  +...|.++ +|||++++||+|+ |        +
T Consensus       351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d--------~  421 (435)
T 4e54_B          351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-G--------Y  421 (435)
T ss_dssp             EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-S--------S
T ss_pred             EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-C--------C
Confidence            6777777666654            23579999999999888763  45678887 7999999999876 4        4


Q ss_pred             eEEeccccC
Q 021319          305 VFRIYGFEN  313 (314)
Q Consensus       305 ~~~~~~~~~  313 (314)
                      +++||++++
T Consensus       422 ~i~iW~~~~  430 (435)
T 4e54_B          422 HILIWSQQE  430 (435)
T ss_dssp             EEEECCCC-
T ss_pred             cEEEEECCc
Confidence            799999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.4e-41  Score=305.21  Aligned_cols=282  Identities=26%  Similarity=0.418  Sum_probs=242.7

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+.+.+|...|++++|+|+++.|++++.|+.|++|+.+.    . ....+.+|...|.+++|+|++ ..+++++.|++|+
T Consensus       255 ~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~----~-~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~  328 (577)
T 2ymu_A          255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG----Q-LLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVK  328 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS----C-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----c-EEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEE
Confidence            356789999999999999999999999999999999643    1 233578999999999999974 6899999999999


Q ss_pred             EEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCCc
Q 021319           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNG  171 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g  171 (314)
                      +||.................+++|+|+++.+++++.|+.+++||... +.+.. ..+...+.+++|+|+++.+++++.++
T Consensus       329 ~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~  407 (577)
T 2ymu_A          329 LWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  407 (577)
T ss_dssp             EEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Confidence            99987655443333455677899999999999999999999999643 44433 34567799999999999999999999


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  251 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  251 (314)
                      .+++|+. ..+.+..+.+|...+++++|+|++++|++++.|+.|++||. +++.+..+.+|..+|.+++|+|++++||++
T Consensus       408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~  485 (577)
T 2ymu_A          408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA  485 (577)
T ss_dssp             EEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred             EEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            9999995 45567778899999999999999999999999999999996 566778888999999999999999999999


Q ss_pred             cCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          252 SEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       252 s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +.|+.|++|+. +++.+..+. |...|++++|+|++++||+++.|        |++|||+.+
T Consensus       486 ~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d--------g~v~lwd~~  538 (577)
T 2ymu_A          486 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD--------KTVKLWNRN  538 (577)
T ss_dssp             ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT--------SEEEEECTT
T ss_pred             eCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc--------CEEEEEeCC
Confidence            99999999995 677777765 56789999999999999999987        578899864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.9e-42  Score=295.68  Aligned_cols=281  Identities=14%  Similarity=0.146  Sum_probs=222.6

Q ss_pred             ccEEEEEECCCCCEEEEeeCCC-------cEEEeecCCCCCCc------eeeEEeecCCCCEEEEEEcCCCCCEEEEE--
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQ-------TARVWHIEPHGHGK------VKDIELRGHADSVDQLCWDPKHADLIATA--   85 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~-------~v~iw~~~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~--   85 (314)
                      -+|++++|+|||++|++||.|.       .|++|+++......      .....+.+|.+.|.++++++   +.+++|  
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~g~~   91 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK---GIILVGCN   91 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---TEEEEECC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC---CEEEEEEC
Confidence            4799999999999999998654       59999997644321      12345778999999988764   355554  


Q ss_pred             ---------eCCCcEEEEeCCCCceeee----EEe------cCceEEEEEccCCCEEEEEe--CCCcEEEEEccCCeEee
Q 021319           86 ---------SGDKTVRLWDARSGKCSQQ----AEL------SGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIH  144 (314)
Q Consensus        86 ---------~~D~~v~iwd~~~~~~~~~----~~~------~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~  144 (314)
                               +.|+.+|+|++........    ...      ......++|+|||+++++++  .|++|++||+++.+++.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                     4578899998765432111    111      11245689999999987654  68999999999999988


Q ss_pred             eeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCcee--eeeecccceEEEEECCCCCEEEEeeCCC----eEEEe
Q 021319          145 RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD--TVVAHTAGCYCIAIDPMGRYFAVGSADS----LVSLW  218 (314)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~t~~~dg----~i~vw  218 (314)
                      ..++..++.+++|+|++..+++++.++ +.+|.....+.+.  ....|...+.+++|+|+++++++++.|+    .+++|
T Consensus       172 ~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          172 EIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             EeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            888888999999999999998887655 5555554444332  3456888899999999999999999887    68899


Q ss_pred             eCCCcEE----EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe--ccCccceeEEcCCCCeeEEE
Q 021319          219 DISEMLC----VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       219 d~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~--~~~~i~~v~~~~~~~~la~~  292 (314)
                      |+.....    ...+.+|..+|.+++|+|+|++||+|+.|+.|+|||+.+++.+..+.  |...|++|+|+|++++||++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence            9876543    34567788899999999999999999999999999999999998863  67899999999999999999


Q ss_pred             ecCCcccccccceEEeccccC
Q 021319          293 GDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       293 ~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |.|        +++|||++.+
T Consensus       331 S~D--------~tvrvw~ip~  343 (365)
T 4h5i_A          331 SAA--------NTIHIIKLPL  343 (365)
T ss_dssp             ETT--------SEEEEEECCT
T ss_pred             eCC--------CeEEEEEcCC
Confidence            988        6999999854

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.4e-42  Score=292.91  Aligned_cols=297  Identities=12%  Similarity=0.173  Sum_probs=241.1

Q ss_pred             eeeeeccc-eeeecccccEEEEEECCC----CCEEEEeeCCCcEEEeecCCCCCCc-eeeEEeecCCCCEEEEEEcCCC-
Q 021319            6 IPFKNLHS-REYTGHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKH-   78 (314)
Q Consensus         6 ~~~~~~~~-~~~~gH~~~V~~v~~s~~----g~~l~s~~~D~~v~iw~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~-   78 (314)
                      +||+.... ....+|.+.|++++|+|+    ...+++++.++.|++|++.....-. ........|...|.+++|+|+. 
T Consensus         3 ~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   82 (366)
T 3k26_A            3 CKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN   82 (366)
T ss_dssp             --CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred             ceeEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC
Confidence            45555443 334589999999999984    4567777777899999997533211 1111122367889999999974 


Q ss_pred             --CCEEEEEeCCCcEEEEeCCCCceeeeEE-ecCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeee----ccCc
Q 021319           79 --ADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRR----KFGY  150 (314)
Q Consensus        79 --~~~l~s~~~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~  150 (314)
                        +.+|++|+.|+.|++||+.+++...... ....+.+++|+| ++++|++++.|+.|++||+++.+.+...    .+..
T Consensus        83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  162 (366)
T 3k26_A           83 TSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD  162 (366)
T ss_dssp             TCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS
T ss_pred             CCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC
Confidence              2589999999999999999998877766 455677899999 9999999999999999999998887765    4567


Q ss_pred             ceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee----------------------------ecccceEEEEECCC
Q 021319          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV----------------------------AHTAGCYCIAIDPM  202 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------------------------~~~~~i~~i~~~~~  202 (314)
                      .+.+++|+|++..+++++.+|.+++|+....+....+.                            .|...+.+++|+  
T Consensus       163 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--  240 (366)
T 3k26_A          163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--  240 (366)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred             ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence            89999999999999999999999999987654433332                            288899999998  


Q ss_pred             CCEEEEeeCCCeEEEeeCCCc--------------EEEEEeeecccCeEEEEEccC--CcEEEEecCCceEEEEECCCCC
Q 021319          203 GRYFAVGSADSLVSLWDISEM--------------LCVRTFTKLEWPVRTISFSHT--GDYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       203 ~~~l~t~~~dg~i~vwd~~~~--------------~~~~~~~~~~~~v~~~~~sp~--~~~l~s~s~d~~v~v~~~~~~~  266 (314)
                      ++++++++.|+.|++||+.+.              ..+..+..|..+|.+++|+|+  +++|++|+.|+.|++||+.+++
T Consensus       241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            779999999999999998765              347778888889999999999  9999999999999999999876


Q ss_pred             eE----EEEec---cCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          267 TV----HQIPC---RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       267 ~~----~~~~~---~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ..    ..+..   ...|++++|+|++++|++++.|        |.++||+++
T Consensus       321 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--------g~i~iwd~~  365 (366)
T 3k26_A          321 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD--------ASIWRWDRL  365 (366)
T ss_dssp             GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT--------SEEEEEEC-
T ss_pred             CccccceEEcccccCCceEEEEeCCCCCeEEEEeCC--------CEEEEEEec
Confidence            43    34443   4789999999999999999977        689999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=282.36  Aligned_cols=244  Identities=23%  Similarity=0.348  Sum_probs=221.6

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      ..+.||...|.+++|++++.+++|++.|++|++||+++..    ....+..|...+.+++|+|++ ++|++++.|+.|++
T Consensus        74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~----~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i  148 (321)
T 3ow8_A           74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK----QIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNI  148 (321)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE----EEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEE
T ss_pred             eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC----EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEE
Confidence            4578999999999999999999999999999999987532    334567888899999999975 69999999999999


Q ss_pred             EeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCc
Q 021319           94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNG  171 (314)
Q Consensus        94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g  171 (314)
                      ||+.+++........ ..+.+++|+|++++|++++.|+.|++||+++.+.+...+ +...+.+++|+|++..+++++.++
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg  228 (321)
T 3ow8_A          149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG  228 (321)
T ss_dssp             EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred             EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence            999998877665544 346689999999999999999999999999998877764 456789999999999999999999


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  251 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  251 (314)
                      .+++|+....+....+.+|...|.+++|+|++++|++++.|++|++||+.+++++.++.+|...|.+++|+|++++|+++
T Consensus       229 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~  308 (321)
T 3ow8_A          229 YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV  308 (321)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence            99999999888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEEEEC
Q 021319          252 SEDLFIDISNV  262 (314)
Q Consensus       252 s~d~~v~v~~~  262 (314)
                      +.|+.|++||.
T Consensus       309 ~~d~~i~vwd~  319 (321)
T 3ow8_A          309 GDDQEIHIYDC  319 (321)
T ss_dssp             ETTCCEEEEEC
T ss_pred             eCCCeEEEEeC
Confidence            99999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.8e-41  Score=292.03  Aligned_cols=286  Identities=15%  Similarity=0.211  Sum_probs=240.6

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      .+..|.++|++++|+|++++|++|+.|+.|++|+++...  ......+.+|...|.+++|+|+ +++|++++.|+.|++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--EEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEEE
Confidence            356699999999999999999999999999999987531  1134467799999999999996 5799999999999999


Q ss_pred             eCCCCceeeeEE---ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE---eeee--ccCcceeeEEeccCCCeEEE
Q 021319           95 DARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP---IHRR--KFGYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        95 d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~  166 (314)
                      |+.+++......   ....+.+++|+|++++|++++.|+.+.+||++..+.   ....  .+...+.+++|+|++..+++
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence            998887544432   345677899999999999999999999999987652   2222  23567999999999999999


Q ss_pred             EcCCceEEEEeCC------------------CCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE
Q 021319          167 TTGNGTVEVLTYP------------------SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (314)
Q Consensus       167 ~~~~g~~~~~~~~------------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~  228 (314)
                      ++.++.+++|+..                  ..+.+..+..|...+.+++|+|++++|++++.||.|++||+++++++..
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  239 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT  239 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence            9999999999953                  4556667778999999999999999999999999999999999999999


Q ss_pred             eeecccCeEEEEEccCCcEEEEecCCceEEEEECCC--CCe--------------------------------E------
Q 021319          229 FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT--GRT--------------------------------V------  268 (314)
Q Consensus       229 ~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~--~~~--------------------------------~------  268 (314)
                      +..+..++.+++|+|++++|+++ .|+.|++|++.+  ++.                                .      
T Consensus       240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (372)
T 1k8k_C          240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG  318 (372)
T ss_dssp             EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred             EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence            99999999999999999999988 999999999977  420                                0      


Q ss_pred             EEE--eccCccceeEEc-CCC---CeeEEEecCCcccccccceEEecccc
Q 021319          269 HQI--PCRAAMNSVEWN-PKY---NLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       269 ~~~--~~~~~i~~v~~~-~~~---~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ..+  .|...|++++|+ +++   .+|++++.|        |+++||+++
T Consensus       319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~D--------g~i~~W~~~  360 (372)
T 1k8k_C          319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD--------GGMSIWDVR  360 (372)
T ss_dssp             CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT--------SEEEEEEHH
T ss_pred             ccccccccCCcceeEEecCCCcceeeEEEecCC--------CceEEEEec
Confidence            111  356789999977 566   899999977        689999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=284.75  Aligned_cols=247  Identities=17%  Similarity=0.199  Sum_probs=208.6

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      .|...|.+++|+|++ .|++|+.||+|+|||+++..........+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECC
Confidence            466789999999985 788999999999999987554334445567999999999999974 799999999999999999


Q ss_pred             CCceeeeEEe-cCceEEEEEccCCC-EEEEEeCCCcEEEEEccCCeEeeeec---cCcceeeEEeccCC-CeEEEEcCCc
Q 021319           98 SGKCSQQAEL-SGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTG-EMFFLTTGNG  171 (314)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~g  171 (314)
                      ++++...+.. ...+.+++|+|++. ++++++.|+.|++||+++.++.....   ....+.+++|+|.+ .++++++.++
T Consensus       158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg  237 (344)
T 4gqb_B          158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG  237 (344)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence            9988877654 45567899999885 78899999999999999888776643   33467889999865 5677889999


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCc-EEE
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIA  249 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~  249 (314)
                      .+++|+....+++..+.+|...|++++|+|++ ++||+|+.|++|++||+.+++++ .+.+|...|.+++|+|+++ +|+
T Consensus       238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~lla  316 (344)
T 4gqb_B          238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLT  316 (344)
T ss_dssp             EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEE
T ss_pred             cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEE
Confidence            99999999999999999999999999999998 57999999999999999988765 4678999999999999986 577


Q ss_pred             EecCCceEEEEECCCCCe
Q 021319          250 SASEDLFIDISNVHTGRT  267 (314)
Q Consensus       250 s~s~d~~v~v~~~~~~~~  267 (314)
                      |+|.|+.|++|++.+...
T Consensus       317 s~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          317 TVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEETTSCEEEEECCC---
T ss_pred             EEcCCCeEEEEECCCCCC
Confidence            999999999999977543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.3e-41  Score=288.02  Aligned_cols=291  Identities=12%  Similarity=0.177  Sum_probs=232.4

Q ss_pred             ccceeeecccccEEEEEECCCCCEEE-EeeC---CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC--CCEEEE
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLA-SGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH--ADLIAT   84 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~-s~~~---D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s   84 (314)
                      +..+.+.+|.+.|++++|+|++..++ +|+.   |+.|+||+++...   .......+|...|.+++|+|+.  +.+|++
T Consensus         9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~   85 (357)
T 3i2n_A            9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---LKLLREIEKAKPIKCGTFGATSLQQRYLAT   85 (357)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---EEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred             HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---ccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence            34455688999999999999997655 5555   9999999997532   2333344799999999999974  578999


Q ss_pred             EeCCCcEEEEeCCCCc-eeeeEEe-cCceEEEE------EccCCCEEEEEeCCCcEEEEEccCCe-Eeeeecc-----Cc
Q 021319           85 ASGDKTVRLWDARSGK-CSQQAEL-SGENINIT------YKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKF-----GY  150 (314)
Q Consensus        85 ~~~D~~v~iwd~~~~~-~~~~~~~-~~~~~~~~------~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-----~~  150 (314)
                      ++.|+.|++||+.+++ ....... ...+.++.      |+|+++.|++++.|+.+++||++..+ ++.....     ..
T Consensus        86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR  165 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred             ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence            9999999999999887 5554443 34455664      57899999999999999999998765 4444322     23


Q ss_pred             ceeeEE----eccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECC---CCCEEEEeeCCCeEEEeeCCCc
Q 021319          151 EVNEIA----WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP---MGRYFAVGSADSLVSLWDISEM  223 (314)
Q Consensus       151 ~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~t~~~dg~i~vwd~~~~  223 (314)
                      .+.++.    |++++..++++..++.+++|+....+.. ....|...+.+++|+|   ++.++++++.||.|++||+++.
T Consensus       166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence            577777    7889999999999999999999877653 3467888999999999   9999999999999999999876


Q ss_pred             EEEEEe-----eecccCeEEEEEccCCc-EEEEecCCceEEEEECCCCC-------------------eEEEEe-ccCcc
Q 021319          224 LCVRTF-----TKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGR-------------------TVHQIP-CRAAM  277 (314)
Q Consensus       224 ~~~~~~-----~~~~~~v~~~~~sp~~~-~l~s~s~d~~v~v~~~~~~~-------------------~~~~~~-~~~~i  277 (314)
                      ..+..+     ..|...|.+++|+|+++ +|++++.|+.|++||+.++.                   .+..+. +...|
T Consensus       245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v  324 (357)
T 3i2n_A          245 HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI  324 (357)
T ss_dssp             ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred             CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe
Confidence            544333     37889999999999998 89999999999999987643                   333333 56789


Q ss_pred             ceeEEcCCCCeeE-EEecCCcccccccceEEeccccC
Q 021319          278 NSVEWNPKYNLLA-YAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       278 ~~v~~~~~~~~la-~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ++++|+|++++|+ +++.|        |.++||++++
T Consensus       325 ~~~~~s~~~~~l~~s~~~d--------~~i~iw~~~~  353 (357)
T 3i2n_A          325 SSLDWSPDKRGLCVCSSFD--------QTVRVLIVTK  353 (357)
T ss_dssp             EEEEECSSSTTEEEEEETT--------SEEEEEEECC
T ss_pred             eEEEEcCCCCeEEEEecCC--------CcEEEEECCC
Confidence            9999999999998 78877        6899999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.6e-41  Score=280.33  Aligned_cols=249  Identities=22%  Similarity=0.345  Sum_probs=196.5

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-CCCEEEEEeCCCcEEE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRL   93 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~D~~v~i   93 (314)
                      .+.+|.+.|++++|+|+|++|+||+.|++|+||+++....  .....+.+|.++|.+++|+|. .+++|+||+.|++|++
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~--~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc--EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            4679999999999999999999999999999999864321  123467899999999999764 3579999999999999


Q ss_pred             EeCCCCcee--eeEE-ecCceEEEEEccC--CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEc
Q 021319           94 WDARSGKCS--QQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT  168 (314)
Q Consensus        94 wd~~~~~~~--~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (314)
                      ||+.+++..  .... ....+.+++|+|+  +.+|++++.|+.+++||++......                        
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~------------------------  137 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS------------------------  137 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC------------------------
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee------------------------
Confidence            999877532  2222 2345667889987  7899999999999999986532100                        


Q ss_pred             CCceEEEEeCCCCCceeeeeecccceEEEEECCC-------------CCEEEEeeCCCeEEEeeCCCcE----EEEEeee
Q 021319          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-------------GRYFAVGSADSLVSLWDISEML----CVRTFTK  231 (314)
Q Consensus       169 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-------------~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~  231 (314)
                                     ...+.+|...+++++|+|+             +++||+|+.|++|++||+++..    ....+.+
T Consensus       138 ---------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~  202 (297)
T 2pm7_B          138 ---------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  202 (297)
T ss_dssp             ---------------CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             ---------------eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC
Confidence                           1122345666677777765             5799999999999999997643    5677889


Q ss_pred             cccCeEEEEEccCC---cEEEEecCCceEEEEECCCCC--eE-EEE---eccCccceeEEcCCCCeeEEEecCCcccccc
Q 021319          232 LEWPVRTISFSHTG---DYIASASEDLFIDISNVHTGR--TV-HQI---PCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD  302 (314)
Q Consensus       232 ~~~~v~~~~~sp~~---~~l~s~s~d~~v~v~~~~~~~--~~-~~~---~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~  302 (314)
                      |...|.+++|+|++   .+|||+|.|+.|++||+.++.  .. ..+   .+...|.+++|+|++++||+++.|       
T Consensus       203 H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D-------  275 (297)
T 2pm7_B          203 HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD-------  275 (297)
T ss_dssp             CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT-------
T ss_pred             CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC-------
Confidence            99999999999995   899999999999999987643  11 222   235679999999999999999987       


Q ss_pred             cceEEecccc
Q 021319          303 EGVFRIYGFE  312 (314)
Q Consensus       303 ~~~~~~~~~~  312 (314)
                       |+++||+.+
T Consensus       276 -~~v~lw~~~  284 (297)
T 2pm7_B          276 -NKVTLWKEN  284 (297)
T ss_dssp             -SCEEEEEEC
T ss_pred             -CcEEEEEEC
Confidence             578899764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-40  Score=291.04  Aligned_cols=285  Identities=16%  Similarity=0.188  Sum_probs=238.3

Q ss_pred             ecccccEEEEEECCCCC-EEEEeeCCCcEEEeec----CCCCCCc--eeeEEeec----------CCCCEEEEEEcCCCC
Q 021319           17 TGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHI----EPHGHGK--VKDIELRG----------HADSVDQLCWDPKHA   79 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~----~~~~~~~--~~~~~~~~----------h~~~v~~l~~~~~~~   79 (314)
                      ..|.+.|++++|+|+++ +|++|+.|+.|++|++    .......  .....+..          |...|.+++|+|+ +
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~  120 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-G  120 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT-S
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC-C
Confidence            34569999999999999 9999999999999999    6432100  01122222          6889999999997 4


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-----------
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----------  147 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----------  147 (314)
                      ++|++++.|+.|++|| .++....... ....+.+++|+|+++.|++++.|+.+.+||+++.+.+....           
T Consensus       121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA  199 (425)
T ss_dssp             SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred             CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence            7999999999999999 4555555544 34567789999999999999999999999998765443211           


Q ss_pred             ----------------------------------------------cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC
Q 021319          148 ----------------------------------------------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL  181 (314)
Q Consensus       148 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  181 (314)
                                                                    +...+.+++|+|+++.+++++.++.+++|+....
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  279 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG  279 (425)
T ss_dssp             ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred             ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence                                                          2235678999999999999999999999999988


Q ss_pred             CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319          182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       182 ~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~  261 (314)
                      +.+..+..|...+.+++|+|++ ++++++.|+.|++||+.+++.+..+..+..++.+++|+|++++|++++.|+.|++|+
T Consensus       280 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~  358 (425)
T 1r5m_A          280 NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD  358 (425)
T ss_dssp             SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence            8888888899999999999999 999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCCCC--------------------eEEEEecc--C-ccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          262 VHTGR--------------------TVHQIPCR--A-AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       262 ~~~~~--------------------~~~~~~~~--~-~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +.+++                    .+..+...  . .|++++|+|++++|++++.|        |.++||+++
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iw~~~  424 (425)
T 1r5m_A          359 LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL--------QEGSVVAIP  424 (425)
T ss_dssp             CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS--------SCCEEEECC
T ss_pred             CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC--------ceEEEEeec
Confidence            98877                    66666543  4 89999999999999999977        578899986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-41  Score=299.37  Aligned_cols=286  Identities=13%  Similarity=0.168  Sum_probs=234.2

Q ss_pred             ceee-ecccccEEEEEECC-CCCEEEEeeCCCcEEEeecCC---CCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319           13 SREY-TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEP---HGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (314)
Q Consensus        13 ~~~~-~gH~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~   87 (314)
                      ...+ .+|.+.|++++|+| ++++|+||+.|++|+|||+..   ... ...... .+|...|.+++|+|+ +++|++++.
T Consensus        55 ~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~~~-~~h~~~v~~~~~~~~-~~~l~s~s~  131 (437)
T 3gre_A           55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-YSSSLT-YDCSSTVTQITMIPN-FDAFAVSSK  131 (437)
T ss_dssp             EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-CSCSEE-EECSSCEEEEEECTT-SSEEEEEET
T ss_pred             EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-cceeee-ccCCCCEEEEEEeCC-CCEEEEEeC
Confidence            3455 78999999999999 999999999999999999865   211 111122 259999999999986 579999999


Q ss_pred             CCcEEEEeCC---CCceeeeEE-------------ecCceEEEE--EccCCCEEEEEeCCCcEEEEEccCCeEeeeec--
Q 021319           88 DKTVRLWDAR---SGKCSQQAE-------------LSGENINIT--YKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--  147 (314)
Q Consensus        88 D~~v~iwd~~---~~~~~~~~~-------------~~~~~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--  147 (314)
                      |++|++||+.   .++......             ......++.  +++++..+++++.|+.|.+||+++.+.+....  
T Consensus       132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  211 (437)
T 3gre_A          132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS  211 (437)
T ss_dssp             TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence            9999999984   454433222             112233444  56889999999999999999999988877765  


Q ss_pred             -cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee-ecccceEEEEEC----CCCCEEEEeeCCCeEEEeeCC
Q 021319          148 -FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAID----PMGRYFAVGSADSLVSLWDIS  221 (314)
Q Consensus       148 -~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~----~~~~~l~t~~~dg~i~vwd~~  221 (314)
                       +...+.+++|+|++..+++++.+|.+++|++...+++..+. .|...|++++++    |++++|++|+.||.|++||++
T Consensus       212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence             45689999999999999999999999999999888777765 677889999665    568899999999999999999


Q ss_pred             CcEEEEEeeec--------------------------ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe---
Q 021319          222 EMLCVRTFTKL--------------------------EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP---  272 (314)
Q Consensus       222 ~~~~~~~~~~~--------------------------~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~---  272 (314)
                      +++++..+..+                          ...|.+++|+ ++++|++|+.|+.|++||+.+++.+..+.   
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  370 (437)
T 3gre_A          292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS  370 (437)
T ss_dssp             TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred             CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence            99988877643                          3457888898 77999999999999999999887665554   


Q ss_pred             -----------------------------------ccCccceeEEcCC--CCeeEEEecCCcccccccceEEecc
Q 021319          273 -----------------------------------CRAAMNSVEWNPK--YNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       273 -----------------------------------~~~~i~~v~~~~~--~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                                                         |...|++++|+++  +.+|++++.|        |+++||.
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d--------G~I~iw~  437 (437)
T 3gre_A          371 RFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS--------GLIGIFQ  437 (437)
T ss_dssp             -CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETT--------SCEEEEC
T ss_pred             ccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC--------ceEEEeC
Confidence                                               5678999999998  7899999977        6899994

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-40  Score=291.81  Aligned_cols=246  Identities=22%  Similarity=0.369  Sum_probs=220.1

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+.+|.+.|++++|+|++++|++|+.|++|+|||+....    ....+.+|...|.+++|+|++ ++|++|+.|++|
T Consensus       142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i  216 (410)
T 1vyh_C          142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTI  216 (410)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC----EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEE
T ss_pred             EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeE
Confidence            346788999999999999999999999999999999986532    234578999999999999974 689999999999


Q ss_pred             EEEeCCCCceeeeEEecC-ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccC---------
Q 021319           92 RLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMT---------  160 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~---------  160 (314)
                      ++||++++.+...+..+. .+..+.++|++.++++++.|+.+++||+++.+..... .+...+.++.|+|+         
T Consensus       217 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  296 (410)
T 1vyh_C          217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA  296 (410)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             EEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh
Confidence            999999998877765443 4567889999999999999999999999988766554 35567899999986         


Q ss_pred             -----------CCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          161 -----------GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       161 -----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                                 +.++++++.++.+++|+....+.+..+.+|...|++++|+|++++|++|+.||.|++||+.+++++..+
T Consensus       297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  376 (410)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence                       668999999999999999988888889999999999999999999999999999999999999999999


Q ss_pred             eecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          230 TKLEWPVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      ..|...|.+++|+|++.+|+|||.|+.|++|+.
T Consensus       377 ~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999999999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-39  Score=273.13  Aligned_cols=280  Identities=19%  Similarity=0.218  Sum_probs=233.7

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ...+.+.+|.+.|++++| |++++|++|+.||.|++||++..    .....+..|...|.+++|+|+ +.++++++.|+.
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~   82 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ----WLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTM   82 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS----EEEEEEEECSSCEEEEEEETT-TTEEEEEETTSC
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC----EEEEEeecCCccEEEEEECCC-CCEEEEecCCCe
Confidence            345678999999999999 99999999999999999999652    233457789999999999997 479999999999


Q ss_pred             EEEEeCCCCc---eeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEecc-CCCeE
Q 021319           91 VRLWDARSGK---CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNM-TGEMF  164 (314)
Q Consensus        91 v~iwd~~~~~---~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~  164 (314)
                      |++|++....   ...... ....+.++.|  +++.+++++.|+.+.+||  ..+..... .+...+..+.+.+ +++.+
T Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence            9999987653   233332 3345566777  678999999999999999  44444443 3556788889888 89999


Q ss_pred             EEEcCCceEEEEeCCCCCceeeeee-cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc
Q 021319          165 FLTTGNGTVEVLTYPSLRPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH  243 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp  243 (314)
                      ++++.++.+++|+.  .+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+..|..+|.+++|+|
T Consensus       159 ~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  235 (313)
T 3odt_A          159 LTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP  235 (313)
T ss_dssp             EEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred             EEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec
Confidence            99999999999993  334455555 888999999999998 89999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          244 TGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ++ .|++++.|+.|++||+.+++.+..+.. ...|++++|+|++. +++++.|        |.++||++++
T Consensus       236 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d--------g~i~iw~~~~  296 (313)
T 3odt_A          236 NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSD--------NLVRIFSQEK  296 (313)
T ss_dssp             TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETT--------SCEEEEESCG
T ss_pred             CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCC--------CcEEEEeCCC
Confidence            99 699999999999999999998888764 55899999999998 4568866        6788999854

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2e-39  Score=276.86  Aligned_cols=247  Identities=20%  Similarity=0.291  Sum_probs=216.6

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ...+..|...|.+++|+|++++|++|+.|+.|++|++............+.+|...|.++.|+++  ..+++++.|++|+
T Consensus        90 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~  167 (340)
T 1got_B           90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCA  167 (340)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEE
T ss_pred             ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEE
Confidence            35567899999999999999999999999999999997644333344567899999999999876  3588999999999


Q ss_pred             EEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCC
Q 021319           93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      +||+.++++...+.. ...+.+++|+|+++++++++.|+.+++||+++.+.+.... +...+.+++|+|++..+++++.+
T Consensus       168 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence            999999987766643 4567789999999999999999999999999887776654 55679999999999999999999


Q ss_pred             ceEEEEeCCCCCceeeeee--cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEE
Q 021319          171 GTVEVLTYPSLRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI  248 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  248 (314)
                      +.+++|++...+.+..+..  +...+++++|+|++++|++|+.||.|++||+.+...+..+.+|..+|.+++|+|++.+|
T Consensus       248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l  327 (340)
T 1got_B          248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV  327 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEE
Confidence            9999999987766555432  33479999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCceEEEEE
Q 021319          249 ASASEDLFIDISN  261 (314)
Q Consensus       249 ~s~s~d~~v~v~~  261 (314)
                      ||||.|+.|++||
T Consensus       328 ~s~s~D~~i~iWd  340 (340)
T 1got_B          328 ATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSCEEEEC
T ss_pred             EEEcCCccEEecC
Confidence            9999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.5e-40  Score=291.06  Aligned_cols=277  Identities=14%  Similarity=0.250  Sum_probs=221.4

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCC-------CceeeEEeecCC------------CCEEEEEEcCCC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-------GKVKDIELRGHA------------DSVDQLCWDPKH   78 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~-------~~~~~~~~~~h~------------~~v~~l~~~~~~   78 (314)
                      .|.+.|++++|+|+|++|++|+.||.|+||++.....       .......+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            4789999999999999999999999999999975331       111244678998            889999999985


Q ss_pred             C-CEEEEEeCCCcEEEEeCCCCceee---------------------------------------e--EEecCceEEEEE
Q 021319           79 A-DLIATASGDKTVRLWDARSGKCSQ---------------------------------------Q--AELSGENINITY  116 (314)
Q Consensus        79 ~-~~l~s~~~D~~v~iwd~~~~~~~~---------------------------------------~--~~~~~~~~~~~~  116 (314)
                      . ..+++++.|++|++||+..+....                                       .  ......+.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            3 588999999999999987643310                                       1  112345668999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEccCC-eEeee--------eccCcceeeEEeccCC-CeEEEEcCCceEEEEeCCCCCc---
Q 021319          117 KPDGTHIAVGNRDDELTILDVRKF-KPIHR--------RKFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLRP---  183 (314)
Q Consensus       117 ~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~---  183 (314)
                      +|++++|+++ .|+.|++||++.. +.+..        ..+...+.+++|+|++ ..+++++.+|.+++|+....+.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 7999999999843 33331        1345679999999998 9999999999999999987765   


Q ss_pred             -eeeeeeccc------------ceEEEEECCCCCEEEEeeCCCeEEEeeCCC-cEEEEEeeecccC--------------
Q 021319          184 -LDTVVAHTA------------GCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTKLEWP--------------  235 (314)
Q Consensus       184 -~~~~~~~~~------------~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~--------------  235 (314)
                       +..+..|..            .+++++|+|++++|++++. +.|++||++. ++++..+..|...              
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence             566777765            8999999999999999998 9999999986 7777777776532              


Q ss_pred             -eEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE---------------------------------eccCccceeE
Q 021319          236 -VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI---------------------------------PCRAAMNSVE  281 (314)
Q Consensus       236 -v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~---------------------------------~~~~~i~~v~  281 (314)
                       +..++|+|++++|++|+.|+.|++||+.+++.+...                                 .....|..++
T Consensus       344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  423 (447)
T 3dw8_B          344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTA  423 (447)
T ss_dssp             CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEE
T ss_pred             cceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEE
Confidence             234999999999999999999999999998776421                                 1124578899


Q ss_pred             EcCCCCeeEEEecCC
Q 021319          282 WNPKYNLLAYAGDDK  296 (314)
Q Consensus       282 ~~~~~~~la~~~~d~  296 (314)
                      |||++++||+++.+.
T Consensus       424 ~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          424 WHPKENIIAVATTNN  438 (447)
T ss_dssp             ECSSSSEEEEECSSC
T ss_pred             ECCCCCEEEEEecce
Confidence            999999999998763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.8e-41  Score=282.41  Aligned_cols=264  Identities=22%  Similarity=0.355  Sum_probs=190.7

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-CCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~D~~v~   92 (314)
                      ..+.+|.+.|++++|+|+|++|+||+.|++|+|||+....  ......+.+|.++|.+++|+|. .+++|+||+.|++|+
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            4567999999999999999999999999999999986531  1233468899999999999753 357899999999999


Q ss_pred             EEeCCCCcee--eeEE-ecCceEEEEEccC--CCEEEEEeCCCcEEEEEccCCeEe---ee-eccCcceeeEEeccCCCe
Q 021319           93 LWDARSGKCS--QQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPI---HR-RKFGYEVNEIAWNMTGEM  163 (314)
Q Consensus        93 iwd~~~~~~~--~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~---~~-~~~~~~~~~~~~~~~~~~  163 (314)
                      +||++++...  .... ....+.+++|+|+  +.+|++++.|+.+++||++.....   .. ..+...+.++.|+|+...
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            9999887532  2222 2345668999997  789999999999999998764211   11 012233445555554210


Q ss_pred             EEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc---EEEEEeeecccCeEEEE
Q 021319          164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM---LCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~  240 (314)
                             +.+  ..            +...    ...+++++|++|+.|+.|++||++..   .++..+.+|...|.+++
T Consensus       165 -------~~~--~~------------~~~~----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~  219 (316)
T 3bg1_A          165 -------GSL--ID------------HPSG----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA  219 (316)
T ss_dssp             ---------------------------CCS----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred             -------ccc--cc------------cccc----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence                   000  00            0000    00113578999999999999999754   56778889999999999


Q ss_pred             EccCC----cEEEEecCCceEEEEECCCC---C-eEEE-EeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          241 FSHTG----DYIASASEDLFIDISNVHTG---R-TVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       241 ~sp~~----~~l~s~s~d~~v~v~~~~~~---~-~~~~-~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      |+|++    ++|||++.|+.|++|++.+.   + .... ..+...|.+++|+|++++||+++.|        |+++||+.
T Consensus       220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D--------~~v~lw~~  291 (316)
T 3bg1_A          220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD--------NKVTLWKE  291 (316)
T ss_dssp             CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESS--------SCEEEEEE
T ss_pred             ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC--------CeEEEEEE
Confidence            99987    89999999999999998762   1 1111 2356789999999999999999988        57888876


Q ss_pred             c
Q 021319          312 E  312 (314)
Q Consensus       312 ~  312 (314)
                      .
T Consensus       292 ~  292 (316)
T 3bg1_A          292 S  292 (316)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-41  Score=294.49  Aligned_cols=284  Identities=14%  Similarity=0.184  Sum_probs=219.9

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      .+..|.++|++++|+|++++|++|+.|+.|+||++....  ......+.+|...|.+++|+|++ ++|++++.|++|++|
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVY   82 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEE
Confidence            345577899999999999999999999999999997531  12334577999999999999984 689999999999999


Q ss_pred             eCCCCc---eee-eEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE---eeeec--cCcceeeEEeccCCCeEE
Q 021319           95 DARSGK---CSQ-QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP---IHRRK--FGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        95 d~~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~  165 (314)
                      |+.++.   ... .......+.+++|+|++++|++++.|+.+++||++..+.   .....  +...+.+++|+|++..++
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence            998876   222 223455677899999999999999999999999987753   33333  567899999999999999


Q ss_pred             EEcCCceEEEEeCCC------------------CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE--
Q 021319          166 LTTGNGTVEVLTYPS------------------LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--  225 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~--  225 (314)
                      +++.++.+++|++..                  .+.+..+ .|...+++++|+|++++|++++.||.|++||+.++.+  
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            999999999999742                  2233444 7889999999999999999999999999999998766  


Q ss_pred             --EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECC-CCCe--------------------------E--------
Q 021319          226 --VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH-TGRT--------------------------V--------  268 (314)
Q Consensus       226 --~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~-~~~~--------------------------~--------  268 (314)
                        +..+..|..+|.+++|+|++++|++++.|+.+ +|+.. ++..                          .        
T Consensus       242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (377)
T 3dwl_C          242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL  320 (377)
T ss_dssp             EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred             eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence              67788899999999999999999999888776 66554 2200                          0        


Q ss_pred             -EEE-----------------eccCccceeEEcCCCC----eeEEEecCCcccccccceEEeccc
Q 021319          269 -HQI-----------------PCRAAMNSVEWNPKYN----LLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       269 -~~~-----------------~~~~~i~~v~~~~~~~----~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                       ..+                 .|...|+++++.+...    .|+|+|.|        |.+|||++
T Consensus       321 ~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~D--------g~i~iWdl  377 (377)
T 3dwl_C          321 RSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTD--------GRVVLWTL  377 (377)
T ss_dssp             ----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETT--------SEEEEECC
T ss_pred             cccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCC--------CcEEEecC
Confidence             000                 1567899999776443    59999988        68999986

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.6e-39  Score=284.22  Aligned_cols=282  Identities=18%  Similarity=0.245  Sum_probs=238.0

Q ss_pred             ceeeeccccc-EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           13 SREYTGHKKK-VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        13 ~~~~~gH~~~-V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ...+.+|... +.++.+  ++++|++|+.||+|++||+.+.    .....+.+|.+.|.+++|+|++  ++++|+.|++|
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i  185 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTV  185 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSTT--EEEEEETTSCE
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC----cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCE
Confidence            3578899887 566666  5789999999999999998753    2345678999999999999864  89999999999


Q ss_pred             EEEeCCCCceeeeEEe-cCceEEEEEc--cCCCEEEEEeCCCcEEEEEccCCeEeee----------------------e
Q 021319           92 RLWDARSGKCSQQAEL-SGENINITYK--PDGTHIAVGNRDDELTILDVRKFKPIHR----------------------R  146 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------------~  146 (314)
                      ++||+.++++...... ...+.++++.  ++++++++++.|+.+.+||++..+....                      .
T Consensus       186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            9999999988776653 4555667777  6889999999999999999987543211                      1


Q ss_pred             ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE
Q 021319          147 KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (314)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~  226 (314)
                      ..+.......++++++.+++++.++.+++|+....+++..+.+|...+++++|+|+++++++|+.||.|++||+++++++
T Consensus       266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            11111222334678899999999999999999998888888899999999999999999999999999999999999999


Q ss_pred             EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceE
Q 021319          227 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF  306 (314)
Q Consensus       227 ~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~  306 (314)
                      .++..|..+|.+++|+  +++|++++.|+.|++||+.++.......+...+..++|+|++.+|++++ |        |.+
T Consensus       346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d--------g~i  414 (464)
T 3v7d_B          346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E--------NQF  414 (464)
T ss_dssp             EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T--------TEE
T ss_pred             EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C--------CeE
Confidence            9999999999999997  5899999999999999999998888887777899999999999999888 5        578


Q ss_pred             EeccccC
Q 021319          307 RIYGFEN  313 (314)
Q Consensus       307 ~~~~~~~  313 (314)
                      +||+++.
T Consensus       415 ~iwd~~~  421 (464)
T 3v7d_B          415 NIYNLRS  421 (464)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            9999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.2e-39  Score=277.14  Aligned_cols=279  Identities=19%  Similarity=0.241  Sum_probs=229.8

Q ss_pred             ceeeecccccEEEEEECCC---CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           13 SREYTGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~---g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      .+.+.+|.+.|++++|+|+   |++|++|+.||.|+||+++...  ......+.+|...|.+++|+|+ +++|++++.|+
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg  108 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDD-GSKVFTASCDK  108 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--CEEEEEEEECSSCEEEEEECTT-SSEEEEEETTS
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--ceeEEEeccccCCEEEEEECcC-CCEEEEEcCCC
Confidence            3457899999999999999   6999999999999999997522  2333567899999999999996 46899999999


Q ss_pred             cEEEEeCCCCceeeeEEecCceEEEEE--ccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319           90 TVRLWDARSGKCSQQAELSGENINITY--KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      .|++||+.+++..........+.+++|  +|++++|++++.|+.+++||+++.+++........+.++.+.  ...++++
T Consensus       109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  186 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVA  186 (368)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEE
T ss_pred             cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEE
Confidence            999999999988777677777888999  899999999999999999999988877776665555555444  5688889


Q ss_pred             cCCceEEEEeCCCCCceeee--eecccceEEEEECCCCCE----EEEeeCCCeEEEeeCCCc---EEEEEeeeccc----
Q 021319          168 TGNGTVEVLTYPSLRPLDTV--VAHTAGCYCIAIDPMGRY----FAVGSADSLVSLWDISEM---LCVRTFTKLEW----  234 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~----l~t~~~dg~i~vwd~~~~---~~~~~~~~~~~----  234 (314)
                      ..++.+.+|+..........  ..+.....++++.++...    +++++.||.|++||++..   ..+..+..|..    
T Consensus       187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  266 (368)
T 3mmy_A          187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN  266 (368)
T ss_dssp             EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred             eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence            99999999998765432221  123344556666554443    999999999999999876   44556666654    


Q ss_pred             --------CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCC
Q 021319          235 --------PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       235 --------~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                              +|.+++|+|++++|++++.|+.|++||+.+++.+..+. +...|++++|+|++.+||+++.|.
T Consensus       267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence                    79999999999999999999999999999999888876 467899999999999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8.9e-39  Score=278.31  Aligned_cols=294  Identities=14%  Similarity=0.172  Sum_probs=238.6

Q ss_pred             cceeeecccccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEE---------eecCCCCEEEEEEcCCCCCE
Q 021319           12 HSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIE---------LRGHADSVDQLCWDPKHADL   81 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~---------~~~h~~~v~~l~~~~~~~~~   81 (314)
                      ..+.+.+|.+.|++++|+| ++++|++|+.||.|++|+++...........         ..+|...|.+++|+|.++.+
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            3456788999999999999 9999999999999999999764432221110         12599999999999966789


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccC---CCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEe
Q 021319           82 IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAW  157 (314)
Q Consensus        82 l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~  157 (314)
                      +++++.|+.|++||+.+++.............+.+.+.   +.++++++.++.+.+||+++.+.+.... +...+.+++|
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~  194 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSW  194 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEE
T ss_pred             EEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEE
Confidence            99999999999999999998888877777888888874   4599999999999999999887776654 5677999999


Q ss_pred             ccCCC-eEEEEcCCceEEEEeCCCCC-ceeee---------------eecccceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319          158 NMTGE-MFFLTTGNGTVEVLTYPSLR-PLDTV---------------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (314)
Q Consensus       158 ~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~---------------~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~  220 (314)
                      +|++. .+++++.+|.+++|+..... ++..+               ..|...+++++|+|++++|++++.||.|++||+
T Consensus       195 ~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (408)
T 4a11_B          195 SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS  274 (408)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            99998 48899999999999986544 22222               568889999999999999999999999999999


Q ss_pred             CCcEEEEEeeec-----ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEec
Q 021319          221 SEMLCVRTFTKL-----EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGD  294 (314)
Q Consensus       221 ~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~  294 (314)
                      .++.....+..+     ...+........+..+++++.|+.|++||+.+++.+..+. +...|++++|+|++++|++++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  354 (408)
T 4a11_B          275 SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR  354 (408)
T ss_dssp             TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC
Confidence            887654433221     1122222233445677778889999999999999998886 5678999999999999999998


Q ss_pred             CCcccccccceEEeccccC
Q 021319          295 DKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       295 d~~~~~~~~~~~~~~~~~~  313 (314)
                      |        |.++||+++.
T Consensus       355 d--------g~i~iw~~~~  365 (408)
T 4a11_B          355 D--------CNILAWVPSL  365 (408)
T ss_dssp             T--------SCEEEEEECC
T ss_pred             C--------CeEEEEeCCC
Confidence            7        5788998853

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-39  Score=278.88  Aligned_cols=247  Identities=17%  Similarity=0.177  Sum_probs=204.9

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      ..+|...|.+++|+|++. +++++.||+|+|||+.+............+|...|.+++|+|++ ++|++|+.|++|++||
T Consensus        90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd  167 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWD  167 (357)
T ss_dssp             EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEE
T ss_pred             cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEE
Confidence            457899999999999985 55678899999999976543333344566899999999999974 6899999999999999


Q ss_pred             CCCCceeeeEEe-cCceEEEEEccCCC-EEEEEeCCCcEEEEEccCCeEeeeec---cCcceeeEEeccCC-CeEEEEcC
Q 021319           96 ARSGKCSQQAEL-SGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTG-EMFFLTTG  169 (314)
Q Consensus        96 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~  169 (314)
                      ++++++...+.. ...+.+++|+|++. .+++++.|+.|++||+++.++.....   ....+.+++|+|++ .++++++.
T Consensus       168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~  247 (357)
T 4g56_B          168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE  247 (357)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence            999988777654 44566799999875 78899999999999999887665443   34568899999975 56778899


Q ss_pred             CceEEEEeCCCCCceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc-CCcE
Q 021319          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH-TGDY  247 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~  247 (314)
                      ++.+++|+....+.+..+.+|...|++++|+|++ ++||+|+.|++|++||++++++++.+ +|...|.+++|+| ++.+
T Consensus       248 d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~  326 (357)
T 4g56_B          248 TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSK  326 (357)
T ss_dssp             SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTE
T ss_pred             ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCE
Confidence            9999999999988888899999999999999987 57999999999999999999887665 7889999999999 7999


Q ss_pred             EEEecCCceEEEEECCCC
Q 021319          248 IASASEDLFIDISNVHTG  265 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~~  265 (314)
                      |+|+|.|+.|++|++.+.
T Consensus       327 l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          327 FTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEEETTSCEEEEECC--
T ss_pred             EEEEcCCCeEEEEECCCC
Confidence            999999999999998753

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.8e-39  Score=270.27  Aligned_cols=244  Identities=18%  Similarity=0.259  Sum_probs=212.5

Q ss_pred             EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 021319           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVR  138 (314)
Q Consensus        60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (314)
                      ..+.+|.+.|.+++|+|++ .+|++++.|++|++||+.++.....+..+ .....+.|+|++++|++++.|+.|++||++
T Consensus         7 ~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             EeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            3578999999999999985 69999999999999999999877766544 445678999999999999999999999999


Q ss_pred             CCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC-ceeeeeecccceEEEEECC-CCCEEEEeeCCCeE
Q 021319          139 KFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLV  215 (314)
Q Consensus       139 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~-~~~~l~t~~~dg~i  215 (314)
                      +.+.+...+ +...+.+++|+|+++.+++++.|+.+++|++.... ....+.+|...|++++|+| ++.+|++|+.|+.|
T Consensus        86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v  165 (304)
T 2ynn_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (304)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred             CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence            888776654 56679999999999999999999999999987653 4456778999999999999 67899999999999


Q ss_pred             EEeeCCCcEEEEEee-ecccCeEEEEEcc--CCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEE
Q 021319          216 SLWDISEMLCVRTFT-KLEWPVRTISFSH--TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAY  291 (314)
Q Consensus       216 ~vwd~~~~~~~~~~~-~~~~~v~~~~~sp--~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~  291 (314)
                      ++||+.+......+. .+...+..++|+|  ++++|++|+.|+.|++||+.+++.+..+. |...|++++|+|++++|++
T Consensus       166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  245 (304)
T 2ynn_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS  245 (304)
T ss_dssp             EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEE
Confidence            999998765544443 4557899999986  77899999999999999999999888876 5678999999999999999


Q ss_pred             EecCCcccccccceEEecccc
Q 021319          292 AGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       292 ~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ++.|        |++|||+++
T Consensus       246 ~s~D--------g~i~iWd~~  258 (304)
T 2ynn_A          246 GSED--------GTLKIWNSS  258 (304)
T ss_dssp             EETT--------SCEEEEETT
T ss_pred             EcCC--------CeEEEEECC
Confidence            9988        578899875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-40  Score=297.86  Aligned_cols=285  Identities=12%  Similarity=0.137  Sum_probs=219.7

Q ss_pred             ccccEEEEEECCCC---------CEEEE-------------------eeCCCcEEEeecCCCCCCceeeEEeecCCCCEE
Q 021319           19 HKKKVHSVAWNCTG---------TKLAS-------------------GSVDQTARVWHIEPHGHGKVKDIELRGHADSVD   70 (314)
Q Consensus        19 H~~~V~~v~~s~~g---------~~l~s-------------------~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~   70 (314)
                      +.+.|.+|+|+|++         ++||+                   ++.|++|+||+++...........+.+|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            57789999999886         55555                   567899999999764322222234667889999


Q ss_pred             EEEEcCC-----CCCEEEEEeCCCcEEEEeCCCCcee-----------eeEE-ecCceEEEEEccCCCEEEEEeCCCcEE
Q 021319           71 QLCWDPK-----HADLIATASGDKTVRLWDARSGKCS-----------QQAE-LSGENINITYKPDGTHIAVGNRDDELT  133 (314)
Q Consensus        71 ~l~~~~~-----~~~~l~s~~~D~~v~iwd~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~  133 (314)
                      +++|+|.     .+.+|++++.|++|++||+..+.+.           ..+. ....+.+++|+++ ..|++|+.|++|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            9999996     2469999999999999999876432           1111 2345678999886 4899999999999


Q ss_pred             EEEccCCe-Eeee-eccCcceeeE--EeccCC-CeEEEEcCCceEEEEeCCCCCceeeeeeccc--ceEEEEECCCCCEE
Q 021319          134 ILDVRKFK-PIHR-RKFGYEVNEI--AWNMTG-EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA--GCYCIAIDPMGRYF  206 (314)
Q Consensus       134 i~d~~~~~-~~~~-~~~~~~~~~~--~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l  206 (314)
                      +||+++.. +... ..+...+.++  .|++++ ..+++++.|+++++|++...+....+.+|..  .+.+++|+|+++.+
T Consensus       291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l  370 (524)
T 2j04_B          291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY  370 (524)
T ss_dssp             EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred             EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence            99998653 3322 2355678888  577887 8899999999999999987776666667753  47899999999999


Q ss_pred             EEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCC-----C---------eEEE--
Q 021319          207 AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-----R---------TVHQ--  270 (314)
Q Consensus       207 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~-----~---------~~~~--  270 (314)
                      ++++.|++|++||++++.++.++.+|...|.+|+|+|++++|+||+.|+.|++||+...     +         .+..  
T Consensus       371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~  450 (524)
T 2j04_B          371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWD  450 (524)
T ss_dssp             EEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECB
T ss_pred             EEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEec
Confidence            99999999999999998888888899999999999999999999999999999985321     0         0100  


Q ss_pred             ----------------------------E-eccCccceeEEcCCCC---eeEEEecCCcccccccceEEecccc
Q 021319          271 ----------------------------I-PCRAAMNSVEWNPKYN---LLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       271 ----------------------------~-~~~~~i~~v~~~~~~~---~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                                                  + .+...|++|+|||+++   .||+|+.|        |++|||.|+
T Consensus       451 ~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~--------g~vrlw~l~  516 (524)
T 2j04_B          451 YSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSA--------GLLTLEYLS  516 (524)
T ss_dssp             CCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTT--------SEEEEEECS
T ss_pred             cCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccC--------ceEEEEEcc
Confidence                                        0 1245689999999965   88998866        799999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.6e-39  Score=276.87  Aligned_cols=275  Identities=15%  Similarity=0.105  Sum_probs=235.0

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCC-EEEEEeCCCcEEEE
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD-LIATASGDKTVRLW   94 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~D~~v~iw   94 (314)
                      ..+|.+.|++++|+|++++|++++.|+.|++|+++.... ......+.+|...|.+++|+|+ ++ +|++++.|+.|++|
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-EEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCEEEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-cccceeeeecCCceEEEEECCC-CCcEEEEEcCCCeEEEE
Confidence            358999999999999999999999999999999976431 1223345689999999999997 57 89999999999999


Q ss_pred             eC-CCCceeeeEE--ecCceEEEEEccCCCEEEEEeCCCcEEEEEccC---------CeEeeeeccCcceeeEEeccCCC
Q 021319           95 DA-RSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRK---------FKPIHRRKFGYEVNEIAWNMTGE  162 (314)
Q Consensus        95 d~-~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      |+ .+++......  ....+.+++|+| ++.+++++.|+.|.+||++.         .+++....+...+.+++|++++ 
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-  162 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-
T ss_pred             EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-
Confidence            99 8877644434  556677899999 99999999999999999987         6666666677789999999877 


Q ss_pred             eEEEEcCCceEEEEeCCC-CCc--eeeeeecccceEEEEECC-CCCEEEEeeCCCeEEEeeCCCc------EEEEEeeec
Q 021319          163 MFFLTTGNGTVEVLTYPS-LRP--LDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEM------LCVRTFTKL  232 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~-~~~--~~~~~~~~~~i~~i~~~~-~~~~l~t~~~dg~i~vwd~~~~------~~~~~~~~~  232 (314)
                       +++++.++.+++|++.. ...  ......|...+.+++|+| +++++++++.||.|++||++..      ..+..+..|
T Consensus       163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  241 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence             88899999999999977 442  223446788899999999 9999999999999999999766      666777777


Q ss_pred             cc---------CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-c-cCccceeEEcCCCCeeEEEecCCc
Q 021319          233 EW---------PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-C-RAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       233 ~~---------~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~-~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      ..         +|.+++|+|++++|++++.|+.|++||+.+++.+..+. + ...|++++  |++.+|++++.|+.
T Consensus       242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            54         89999999999999999999999999999999888876 3 67899999  99999999999976

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.4e-39  Score=279.84  Aligned_cols=282  Identities=13%  Similarity=0.228  Sum_probs=230.1

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~   96 (314)
                      .+| ..+....|+|++++|++|+.|+.|++|+++..    .....+.+|...|.+++|+|++ .+|++++.|++|++||+
T Consensus        95 ~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~  168 (420)
T 3vl1_A           95 KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----LQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSV  168 (420)
T ss_dssp             CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC----EEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEET
T ss_pred             ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc----ceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeC
Confidence            344 45566678999999999999999999998742    2333457899999999999974 69999999999999999


Q ss_pred             CCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-------------------------Cc
Q 021319           97 RSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-------------------------GY  150 (314)
Q Consensus        97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------------------~~  150 (314)
                      .+++....+. ....+.+++|+|+++.|++++.|+.+++||+++.+.+.....                         ..
T Consensus       169 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             TTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             CCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence            9988776665 345667899999999999999999999999998887766542                         13


Q ss_pred             ceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee-ecccceEEEEECCCCC-EEEEeeCCCeEEEeeCCCcEE-EE
Q 021319          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLC-VR  227 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~-~l~t~~~dg~i~vwd~~~~~~-~~  227 (314)
                      .+..++|+|+++.+++++.+|.+++|+....+....+. .|...+++++|+|+++ +|++|+.||.|++||++++.. +.
T Consensus       249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~  328 (420)
T 3vl1_A          249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG  328 (420)
T ss_dssp             CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred             cccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence            44556778899999999999999999998877665554 5788999999999999 999999999999999987643 56


Q ss_pred             Eeee-cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCe----------EEEEeccCccceeEEcCCCC---eeEEEe
Q 021319          228 TFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT----------VHQIPCRAAMNSVEWNPKYN---LLAYAG  293 (314)
Q Consensus       228 ~~~~-~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~----------~~~~~~~~~i~~v~~~~~~~---~la~~~  293 (314)
                      .+.. +..++.++. .|++++|++++.|+.|++|++.....          .....+...|.+++|+|++.   .|+++|
T Consensus       329 ~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g  407 (420)
T 3vl1_A          329 EFLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG  407 (420)
T ss_dssp             EEEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE
T ss_pred             hhhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEc
Confidence            6666 566788884 56889999999999999999876322          12223466899999999998   565666


Q ss_pred             cCCcccccccceEEeccccC
Q 021319          294 DDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       294 ~d~~~~~~~~~~~~~~~~~~  313 (314)
                      .+        |.+++|++++
T Consensus       408 ~~--------g~~~~~~~~~  419 (420)
T 3vl1_A          408 KN--------NFCALYNLSN  419 (420)
T ss_dssp             TT--------TEEEEEESCC
T ss_pred             CC--------ceEEEEeccC
Confidence            44        6899999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-40  Score=289.18  Aligned_cols=284  Identities=16%  Similarity=0.264  Sum_probs=237.5

Q ss_pred             ccccEEEEEECCCCC-EEEEe----------eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319           19 HKKKVHSVAWNCTGT-KLASG----------SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG   87 (314)
Q Consensus        19 H~~~V~~v~~s~~g~-~l~s~----------~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~   87 (314)
                      +...|.+++|+|+++ +|++|          +.|+.|+||++......  .......|...|.+++|+|++ .+|++++.
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~   87 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--KPIASLQVDSKFNDLDWSHNN-KIIAGALD   87 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--SCSCCCCCSSCEEEEEECSSS-SCEEEEES
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--cEEEEEecCCceEEEEECCCC-CeEEEEcc
Confidence            456789999999997 89999          89999999999753211  112234689999999999975 68899999


Q ss_pred             CCcEEEEeCCC----CceeeeEE-ecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCe------Eeee----eccCcc
Q 021319           88 DKTVRLWDARS----GKCSQQAE-LSGENINITYKPD-GTHIAVGNRDDELTILDVRKFK------PIHR----RKFGYE  151 (314)
Q Consensus        88 D~~v~iwd~~~----~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~------~~~~----~~~~~~  151 (314)
                      |+.|++||+..    .+...... ....+.+++|+|+ +++|++++.|+.|.+||+++.+      ....    ..+...
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence            99999999987    23433333 3455678999998 8999999999999999998765      2222    234567


Q ss_pred             eeeEEeccC-CCeEEEEcCCceEEEEeCCCCCceeeeeec------ccceEEEEECCCC-CEEEEeeCCC---eEEEeeC
Q 021319          152 VNEIAWNMT-GEMFFLTTGNGTVEVLTYPSLRPLDTVVAH------TAGCYCIAIDPMG-RYFAVGSADS---LVSLWDI  220 (314)
Q Consensus       152 ~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~-~~l~t~~~dg---~i~vwd~  220 (314)
                      +.+++|+|+ +..+++++.++.+++|+....+.+..+..+      ...+++++|+|++ .++++++.|+   .|++||+
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence            899999999 788999999999999999888777777665      7789999999997 6899999998   9999999


Q ss_pred             CCc-EEEEEee-ecccCeEEEEEcc-CCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCC-CeeEEEecC
Q 021319          221 SEM-LCVRTFT-KLEWPVRTISFSH-TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKY-NLLAYAGDD  295 (314)
Q Consensus       221 ~~~-~~~~~~~-~~~~~v~~~~~sp-~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~-~~la~~~~d  295 (314)
                      ++. ..+..+. .|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+. +...|++++|+|++ .+|++++.|
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  327 (416)
T 2pm9_A          248 RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD  327 (416)
T ss_dssp             TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred             CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC
Confidence            876 5666777 7889999999999 99999999999999999999999988876 46789999999998 899999977


Q ss_pred             CcccccccceEEeccccC
Q 021319          296 KNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~  313 (314)
                              |.++||+++.
T Consensus       328 --------~~i~iw~~~~  337 (416)
T 2pm9_A          328 --------NKIEVQTLQN  337 (416)
T ss_dssp             --------SEEEEEESCC
T ss_pred             --------CcEEEEEccC
Confidence                    6899999854

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9e-39  Score=271.30  Aligned_cols=280  Identities=16%  Similarity=0.210  Sum_probs=237.1

Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      |.++|.+++|+|||+.++++..++.+.+|....    ........+|...|.+++|+|++ .++++++ |+.|++||+.+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR----HARQINTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS----EEEEEEEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCC----ccccceeccCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCC
Confidence            567899999999999999998888777775432    22334556899999999999974 6888888 99999999987


Q ss_pred             CceeeeE------EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE--eeee-ccCcceeeEEeccCCCeEEEEcC
Q 021319           99 GKCSQQA------ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHRR-KFGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        99 ~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      +......      .....+.+++|+|+++.+++++.|+.+.+||++..+.  .... .+...+.++.|+|+++.+++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  161 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS  161 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence            6533222      2345567899999999999999999999999988763  2222 34566899999999999999999


Q ss_pred             CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEE
Q 021319          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA  249 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  249 (314)
                      ++.+.+|+....+.+..+..|...+.+++|+|+++++++++.||.|++||+++++.+..+ .+..++.+++|+|++++|+
T Consensus       162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~  240 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLA  240 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEE
T ss_pred             CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEE
Confidence            999999999988888888889999999999999999999999999999999999887776 4677899999999999999


Q ss_pred             EecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          250 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       250 s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +++.|+.+++||..+++......+...|.+++|+|++++|++++.|        |.++||+++.
T Consensus       241 ~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~~~~~  296 (337)
T 1gxr_A          241 VGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD--------NLLNAWRTPY  296 (337)
T ss_dssp             EEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT--------SEEEEEETTT
T ss_pred             EEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCC--------CcEEEEECCC
Confidence            9999999999999998876555667889999999999999999977        6788998753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.3e-39  Score=271.82  Aligned_cols=259  Identities=19%  Similarity=0.253  Sum_probs=216.1

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-CCCEEEEEeCCCcE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTV   91 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~D~~v   91 (314)
                      .+.+.+|.+.|++++|+|++++|++|+.||.|++|++............+.+|...|.+++|+|. ++++|++++.|++|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            45678999999999999999999999999999999997644333344567899999999999985 35799999999999


Q ss_pred             EEEeCCCCc---------eeeeEE-ecCceEEEEEccC--CCEEEEEeCCCcEEEEEccCCeEeeee-------------
Q 021319           92 RLWDARSGK---------CSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRR-------------  146 (314)
Q Consensus        92 ~iwd~~~~~---------~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------  146 (314)
                      ++||++.+.         ...... ....+..++|+|+  +.++++++.|+.+++||+++.+.+...             
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            999998763         233332 3455678999999  999999999999999999876543221             


Q ss_pred             -ccCcceeeEEeccC---CCeEEEEcCCceEEEEeCCCCCc--eeeeeecccceEEEEECCCC----CEEEEeeCCCeEE
Q 021319          147 -KFGYEVNEIAWNMT---GEMFFLTTGNGTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMG----RYFAVGSADSLVS  216 (314)
Q Consensus       147 -~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~----~~l~t~~~dg~i~  216 (314)
                       .....+.++.|+|.   +..++++..++.+.++.....+.  +..+.+|...|++++|+|++    ++|++++.||.|+
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence             23346788999997   89999999999997777665543  56677899999999999998    8999999999999


Q ss_pred             EeeCCCc----------------------------------------------EEEEEeeecccCeEEEEEccCCcEEEE
Q 021319          217 LWDISEM----------------------------------------------LCVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       217 vwd~~~~----------------------------------------------~~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      +||++..                                              ..+..+.+|..+|.+++|+|++++|++
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence            9999764                                              566777788899999999999999999


Q ss_pred             ecCCceEEEEECCCCCeEEEE
Q 021319          251 ASEDLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~  271 (314)
                      ++.|+.|++|++.+++.+..+
T Consensus       324 ~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          324 AGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             EETTSCEEEEEECTTSCEEEE
T ss_pred             ecCCCcEEEEecCcCcchhhe
Confidence            999999999999988766554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.5e-38  Score=296.28  Aligned_cols=280  Identities=18%  Similarity=0.174  Sum_probs=243.4

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ...+.+.+|.+.|++++|+|++++|++|+.||.|+|||+.++    .....+.+|..+|.+++|+|++ ++|++++.|+.
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~   78 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ----VEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFR   78 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC----ceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCe
Confidence            345778999999999999999999999999999999998753    2334677899999999999974 68999999999


Q ss_pred             EEEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC-eEeeee-ccCcceeeEEecc-CCCeEEE
Q 021319           91 VRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRR-KFGYEVNEIAWNM-TGEMFFL  166 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~-~~~~~~~~~~~~~-~~~~~~~  166 (314)
                      |++||+.+++...... ....+.+++|+|++++|++++.|+.+.+||+... ...... .+...+.+++|+| ++..+++
T Consensus        79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  158 (814)
T 3mkq_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (814)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence            9999999998877765 3455678999999999999999999999999876 443333 3556799999999 7889999


Q ss_pred             EcCCceEEEEeCCCCCceeeeeecc-cceEEEEECC--CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc
Q 021319          167 TTGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH  243 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp  243 (314)
                      ++.+|.+.+|+....++...+..+. ..+.+++|+|  +++++++++.||.|++||+.++.++..+..|..+|.+++|+|
T Consensus       159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  238 (814)
T 3mkq_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP  238 (814)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence            9999999999998777766665544 7899999999  999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCC--eeEEEecC
Q 021319          244 TGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYN--LLAYAGDD  295 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~--~la~~~~d  295 (314)
                      ++++|++++.|+.|++||..+++.+..+.. ...+.+++|+|++.  ++++++++
T Consensus       239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  293 (814)
T 3mkq_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN  293 (814)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCC
Confidence            999999999999999999999998888764 56899999999986  35555533

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-38  Score=274.13  Aligned_cols=239  Identities=23%  Similarity=0.340  Sum_probs=209.8

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~  100 (314)
                      ..|++++|+|+|++|++|+.|++|+|||++..    .....+.+|...|.+++|+|++ +.|++++.|++|++||+++++
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCC----cEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe
Confidence            35999999999999999999999999998753    2344678999999999999975 689999999999999999998


Q ss_pred             eeeeEEecCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeee--------ccCcceeeEEeccCCCeEEEEcCCc
Q 021319          101 CSQQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRR--------KFGYEVNEIAWNMTGEMFFLTTGNG  171 (314)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g  171 (314)
                      +............++++| +++++++++.|+.+++||+++.+.+...        .+...+.+++|+|++..+++++.++
T Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~  278 (393)
T 1erj_A          199 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  278 (393)
T ss_dssp             EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            887777777788899999 8999999999999999999887766543        2345789999999999999999999


Q ss_pred             eEEEEeCCCC------------CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEE
Q 021319          172 TVEVLTYPSL------------RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI  239 (314)
Q Consensus       172 ~~~~~~~~~~------------~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  239 (314)
                      .+++|++...            .....+.+|...+.+++++|++++|++|+.|+.|++||+.++.++..+.+|...|.++
T Consensus       279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  358 (393)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence            9999998642            2234567899999999999999999999999999999999999999999999999999


Q ss_pred             EEcc------CCcEEEEecCCceEEEEECCC
Q 021319          240 SFSH------TGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       240 ~~sp------~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      +|+|      ++.+|||||.|+.|++|++.+
T Consensus       359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9886      689999999999999999754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.2e-37  Score=261.93  Aligned_cols=244  Identities=20%  Similarity=0.257  Sum_probs=212.4

Q ss_pred             eEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-----eeeeEEe-cCceEEEEEccCCCEEEEEeCCCcE
Q 021319           59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-----CSQQAEL-SGENINITYKPDGTHIAVGNRDDEL  132 (314)
Q Consensus        59 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i  132 (314)
                      ...+.+|.+.|.+++|+|.++++|+||+.|++|++||+....     ....+.. ...+..++|+|++++|++++.|++|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            346889999999999999877899999999999999986432     2223332 3455679999999999999999999


Q ss_pred             EEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCC------CCE
Q 021319          133 TILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM------GRY  205 (314)
Q Consensus       133 ~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~------~~~  205 (314)
                      ++||+++.+.+.... +...+.+++|++++..+++++.|+.+++|+... +.+..+.+|...+.+++++|.      +..
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  168 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVT  168 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCE
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence            999999988876653 567899999999999999999999999999864 456677889999999999985      448


Q ss_pred             EEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319          206 FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       206 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~  285 (314)
                      +++++.|+.|++||+++.+....+.+|..+|.+++|+|++++|++|+.|+.|++||+.+++.+..+.....|.+++|+|+
T Consensus       169 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~  248 (319)
T 3frx_A          169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN  248 (319)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSS
T ss_pred             EEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988888889999999999


Q ss_pred             CCeeEEEecCCcccccccceEEecccc
Q 021319          286 YNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       286 ~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +.+|++++.+         .++||+++
T Consensus       249 ~~~la~~~~~---------~i~v~~~~  266 (319)
T 3frx_A          249 RYWLAAATAT---------GIKVFSLD  266 (319)
T ss_dssp             SSEEEEEETT---------EEEEEEET
T ss_pred             CCEEEEEcCC---------CcEEEEeC
Confidence            9999988754         36677654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6e-39  Score=277.97  Aligned_cols=255  Identities=17%  Similarity=0.266  Sum_probs=213.5

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCC---CceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH---GKVKDIELRGHADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~---~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      ...+.+|...|.+++|+|+|++|++|+.|+.+++|++.....   .......+.+|.+.|.++.|.|.++..|++|+.|+
T Consensus       101 ~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~  180 (380)
T 3iz6_a          101 THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ  180 (380)
T ss_dssp             EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTS
T ss_pred             ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCC
Confidence            456788999999999999999999999999999999864321   11122346799999999999998777899999999


Q ss_pred             cEEEEeCCCCceeeeEE------ecCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCC-eEeeee-ccCcceeeEEeccC
Q 021319           90 TVRLWDARSGKCSQQAE------LSGENINITYKP-DGTHIAVGNRDDELTILDVRKF-KPIHRR-KFGYEVNEIAWNMT  160 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~------~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~-~~~~~~~~~~~~~~  160 (314)
                      +|++||+.++++...+.      .......+.+++ +++++++|+.|+.|++||++.. +.+... .+...+.+++|+|+
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~  260 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD  260 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred             cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC
Confidence            99999999998766542      234566788876 8899999999999999999843 444433 35567999999999


Q ss_pred             CCeEEEEcCCceEEEEeCCCCCceeeeeecc-------cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe----
Q 021319          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF----  229 (314)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~----  229 (314)
                      +..+++++.|+.+++|+....+.+..+..+.       ..+++++|+|+|++|++|+.||.|++||+..++.+..+    
T Consensus       261 ~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  340 (380)
T 3iz6_a          261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ  340 (380)
T ss_dssp             SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSC
T ss_pred             CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEeccc
Confidence            9999999999999999998877666554332       24889999999999999999999999999988877776    


Q ss_pred             eecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCe
Q 021319          230 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  267 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~  267 (314)
                      .+|...|.+++|+|++++|+|||.|+.|++|++...+.
T Consensus       341 ~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          341 NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            56888999999999999999999999999999876543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.7e-37  Score=266.40  Aligned_cols=248  Identities=21%  Similarity=0.279  Sum_probs=212.9

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC--ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ...+..|...|.+++|+|+|.+|++|+.|+.+++|++......  ......+.+|...|.+++|+|++ ..|++++.|++
T Consensus        99 ~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~  177 (354)
T 2pbi_B           99 EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGT  177 (354)
T ss_dssp             EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSE
T ss_pred             ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCc
Confidence            3456678899999999999999999999999999998643211  12234567899999999999974 68899999999


Q ss_pred             EEEEeCCCCceeeeEEec-CceEEEEEcc--CCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEE
Q 021319           91 VRLWDARSGKCSQQAELS-GENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  166 (314)
                      |++||+.++++...+..+ ..+.++.+.|  +++.|++++.|+.+++||+++.+.+.... +...+.+++|+|++..+++
T Consensus       178 v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s  257 (354)
T 2pbi_B          178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS  257 (354)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEE
Confidence            999999999887776544 4456677876  57899999999999999999988776654 4667999999999999999


Q ss_pred             EcCCceEEEEeCCCCCceeeeeec--ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319          167 TTGNGTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT  244 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~  244 (314)
                      ++.|+.+++|++...+.+..+..+  ...+.+++|+|++++|++|+.|+.|++||+.++.++..+.+|..+|.+++|+|+
T Consensus       258 ~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spd  337 (354)
T 2pbi_B          258 GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD  337 (354)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred             EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCC
Confidence            999999999999876655544432  346899999999999999999999999999999888899999999999999999


Q ss_pred             CcEEEEecCCceEEEEE
Q 021319          245 GDYIASASEDLFIDISN  261 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~  261 (314)
                      +++|+||+.|+.|++|+
T Consensus       338 g~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          338 GTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEcCCCCEEecC
Confidence            99999999999999995

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.2e-37  Score=283.58  Aligned_cols=286  Identities=17%  Similarity=0.258  Sum_probs=229.9

Q ss_pred             ceeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC---CEEEEEEcCCCCCEEEEEeCC
Q 021319           13 SREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASGD   88 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~D   88 (314)
                      ...+.+|...|++++|+|+++ .|++++.|+.|++||+...    .....+.+|..   .|.+++|+|+++++|++++.|
T Consensus       153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (615)
T 1pgu_A          153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF----KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  228 (615)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB----EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc----ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence            355678999999999999998 8999999999999998642    23446778999   999999999745799999999


Q ss_pred             CcEEEEeCCCCceeeeE-----EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC-----cceeeEEec
Q 021319           89 KTVRLWDARSGKCSQQA-----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-----YEVNEIAWN  158 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~  158 (314)
                      +.|++||+++++.....     .....+..++|+ +++++++++.|+.+++||+++.+.+......     ..+..+.|.
T Consensus       229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (615)
T 1pgu_A          229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT  307 (615)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred             CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC
Confidence            99999999999887776     455667789999 9999999999999999999998887766543     456667775


Q ss_pred             cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCC------------------------------------
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM------------------------------------  202 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~------------------------------------  202 (314)
                       ++..+++++.++.+++|+....+++..+.+|...+++++| |+                                    
T Consensus       308 -~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~  385 (615)
T 1pgu_A          308 -GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE  385 (615)
T ss_dssp             -ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTC
T ss_pred             -CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcE
Confidence             8889999999999999987765555444444433333333 21                                    


Q ss_pred             ----------------------------------------------------------------------CCEEEEeeC-
Q 021319          203 ----------------------------------------------------------------------GRYFAVGSA-  211 (314)
Q Consensus       203 ----------------------------------------------------------------------~~~l~t~~~-  211 (314)
                                                                                            ++++++++. 
T Consensus       386 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  465 (615)
T 1pgu_A          386 YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEE  465 (615)
T ss_dssp             CEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred             EEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecC
Confidence                                                                                  445555555 


Q ss_pred             CCeEEEeeCCCcEEE-EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe--ccCccceeEEcC----
Q 021319          212 DSLVSLWDISEMLCV-RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSVEWNP----  284 (314)
Q Consensus       212 dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~--~~~~i~~v~~~~----  284 (314)
                      |+.|++||+.++... ..+..|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+.  +...|++++|+|    
T Consensus       466 d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  545 (615)
T 1pgu_A          466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  545 (615)
T ss_dssp             TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             CCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccc
Confidence            666666666555443 4556678899999999999999999999999999999999888765  678899999999    


Q ss_pred             ------CCCeeEEEecCCcccccccceEEeccccC
Q 021319          285 ------KYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       285 ------~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                            ++++||+++.|        |+++||+++.
T Consensus       546 ~~~~~~~~~~l~~~~~d--------g~i~iw~~~~  572 (615)
T 1pgu_A          546 ANEEEIEEDLVATGSLD--------TNIFIYSVKR  572 (615)
T ss_dssp             ----CCSCCEEEEEETT--------SCEEEEESSC
T ss_pred             ccccccCCCEEEEEcCC--------CcEEEEECCC
Confidence                  99999999987        5788998864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.5e-37  Score=303.47  Aligned_cols=248  Identities=21%  Similarity=0.287  Sum_probs=213.7

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      .....+.+|.+.|++++|+|+|++|++|+.||+|++||+.+..    ....+.+|...|.+++|+|++ .++++++.|++
T Consensus       606 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~----~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~  680 (1249)
T 3sfz_A          606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHEDEVLCCAFSSDD-SYIATCSADKK  680 (1249)
T ss_dssp             CCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred             cceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC----EEEEeccCCCCEEEEEEecCC-CEEEEEeCCCe
Confidence            3445678999999999999999999999999999999997632    334678999999999999975 69999999999


Q ss_pred             EEEEeCCCCceeeeEEec-CceEEEEEcc--CCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEE
Q 021319           91 VRLWDARSGKCSQQAELS-GENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  166 (314)
                      |++||+.++++......+ ..+.+++|+|  ++..+++++.|+.+.+||+++.+.+... .+...+.+++|+|++..+++
T Consensus       681 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  760 (1249)
T 3sfz_A          681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS  760 (1249)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             EEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEE
Confidence            999999999887776543 4566799999  5668999999999999999998877664 35667999999999999999


Q ss_pred             EcCCceEEEEeCCCCCceee------------------------------------------------------e-eecc
Q 021319          167 TTGNGTVEVLTYPSLRPLDT------------------------------------------------------V-VAHT  191 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~~------------------------------------------------------~-~~~~  191 (314)
                      ++.+|.+++|+....+....                                                      + .+|.
T Consensus       761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~  840 (1249)
T 3sfz_A          761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH  840 (1249)
T ss_dssp             EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred             EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC
Confidence            99999999998754322111                                                      1 1567


Q ss_pred             cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319          192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       192 ~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      ..+.+++|+|+++++++++.||.|++||+.++..+..+.+|...|.+++|+|++++|++++.|+.+++|++.
T Consensus       841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            789999999999999999999999999999999999999999999999999999999999999999999853

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-37  Score=269.15  Aligned_cols=280  Identities=17%  Similarity=0.253  Sum_probs=229.6

Q ss_pred             eccccc--EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           17 TGHKKK--VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        17 ~gH~~~--V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      .+|...  +.+++|++  ..+++++.|+.|++|++++..   ........|...|.+++|+|+ +.+|++|+.|+.|++|
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~---~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGS---VSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIY  161 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCC---EEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEE
T ss_pred             CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCc---EeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEE
Confidence            366654  44566664  568899999999999997642   222223348999999999996 4799999999999999


Q ss_pred             eCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccC-CeEeeee-ccCcceeeEEeccCCCeEEEEcCCc
Q 021319           95 DARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNG  171 (314)
Q Consensus        95 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g  171 (314)
                      |+.+++....... ...+.+++|  ++..+++++.|+.+.+||++. ...+... .+...+.+++|+|++..+++++.++
T Consensus       162 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~  239 (401)
T 4aez_A          162 DVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN  239 (401)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence            9999887766643 445567777  567999999999999999984 3333333 4567899999999999999999999


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCC-CEEEEee--CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEE
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI  248 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  248 (314)
                      .+++|++...+++..+..|...+.+++|+|++ .++++++  .|+.|++||+.+++++..+. +...+.+++|+|++++|
T Consensus       240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l  318 (401)
T 4aez_A          240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEI  318 (401)
T ss_dssp             CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEE
T ss_pred             eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeE
Confidence            99999999888888888899999999999976 4666655  79999999999998888875 56689999999999999


Q ss_pred             EE--ecCCceEEEEECCCCCeEEEE---eccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          249 AS--ASEDLFIDISNVHTGRTVHQI---PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       249 ~s--~s~d~~v~v~~~~~~~~~~~~---~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ++  |+.|+.|++|++.+++.....   .+...|++++|+|++.+|++++.|        |+++||+++.
T Consensus       319 ~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d--------g~i~iw~~~~  380 (401)
T 4aez_A          319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD--------ENLKFWRVYD  380 (401)
T ss_dssp             EEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTT--------SEEEEEECCC
T ss_pred             EEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCC--------CcEEEEECCC
Confidence            99  558999999999887655443   256789999999999999999977        6899999853

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-37  Score=265.47  Aligned_cols=252  Identities=20%  Similarity=0.295  Sum_probs=200.7

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~   96 (314)
                      .+|...|++++|+|+|++|++|+.|++++||+++...  ......+.+|...|.+++|+|+ +++|++|+.|++|++||+
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~--~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~  134 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEV  134 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC---EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC--eEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEEC
Confidence            6899999999999999999999999999999986532  1233467899999999999997 479999999999999999


Q ss_pred             CCCcee---eeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe--eee-ccCcceeeEEeccCCCeEEEEcC
Q 021319           97 RSGKCS---QQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI--HRR-KFGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        97 ~~~~~~---~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      +.+...   .... ....+..++|+|++++|++++.|+.+++||++..+..  ... .+...+.+++|+|+++.+++++.
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence            876432   2222 2345678999999999999999999999999877543  222 34567999999999999999999


Q ss_pred             CceEEEEeCCCCC---------------ceeeeee-cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE---------
Q 021319          170 NGTVEVLTYPSLR---------------PLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML---------  224 (314)
Q Consensus       170 ~g~~~~~~~~~~~---------------~~~~~~~-~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~---------  224 (314)
                      |+.+++|+.....               .+..+.+ |...|++++|+|++..|++++.|+.|++|+.....         
T Consensus       215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  294 (345)
T 3fm0_A          215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL  294 (345)
T ss_dssp             TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred             CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence            9999999852211               1122222 78889999999999999999999999999986431         


Q ss_pred             EEEEeeecccCeEEEEEccCC-cEEEEecCCceEEEEECCCCCeEEEE
Q 021319          225 CVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       225 ~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~~~~~~  271 (314)
                      ......+|...|.+++|+|++ .+|||||.|+.|++|++.+++.+...
T Consensus       295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            122345788899999999998 59999999999999999988776554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=255.44  Aligned_cols=276  Identities=17%  Similarity=0.264  Sum_probs=223.6

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      .++|+||+++ +|++ +.|++|+|||++++.  ....+.+.+|...|.+++|+|++ ++|++|+.|++|++||+.++++.
T Consensus        28 ~~~l~WS~~~-~lAv-g~D~tV~iWd~~tg~--~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAV-ALDNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEE-EETTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEEECCCC-EEEE-EeCCEEEEEECCCCC--EEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeE
Confidence            5789999886 5555 469999999997643  33344567899999999999975 69999999999999999999887


Q ss_pred             eeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe-ee-eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC
Q 021319          103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS  180 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  180 (314)
                      .....+.... .++.+++..+++++.++.+.+|+....... .. ..+...+..+.+.+.++.++++..++.+++|+...
T Consensus       103 ~~~~~h~~~~-~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          103 RNMTSHSARV-GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EEEECCSSCE-EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEecCccceE-EEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            7765443332 345667889999999999999998765433 22 33456788899999999999999999999999876


Q ss_pred             CCc----eeeeeecccceEEEEECCCCCE---EEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEec-
Q 021319          181 LRP----LDTVVAHTAGCYCIAIDPMGRY---FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS-  252 (314)
Q Consensus       181 ~~~----~~~~~~~~~~i~~i~~~~~~~~---l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s-  252 (314)
                      .+.    ......+...+.+++++|++..   +++++.++.|++||.......... .+...+..++|+|++..+++++ 
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHG  260 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEEC
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEE
Confidence            543    2334567788999999997653   457788999999999887766554 4666799999999999887654 


Q ss_pred             -CCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          253 -EDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       253 -~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                       .|+.|++||+.+++++..+. |.+.|++|+|+|++++||++|.|        |++|||++.+
T Consensus       261 ~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D--------~~v~iWd~~~  315 (318)
T 4ggc_A          261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD--------ETLRLWRCFE  315 (318)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT--------TEEEEECCSC
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC--------CeEEEEECCC
Confidence             89999999999999998886 57899999999999999999987        6899999854

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.8e-37  Score=268.53  Aligned_cols=275  Identities=17%  Similarity=0.277  Sum_probs=224.5

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~  101 (314)
                      .++.|+||++ +.|++| .|++|+|||+.++.  ....+.+.+|...|.+++|+|++ ++|++|+.|++|++||+.++++
T Consensus       107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~--~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEE-ETTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE
T ss_pred             cceeEEECCC-CEEEEE-eCCEEEEEECCCCC--EEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcE
Confidence            3567999975 466655 59999999997643  23344567899999999999974 7999999999999999999988


Q ss_pred             eeeEEecC-ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe-ee-eccCcceeeEEeccCCCeEEEEcCCceEEEEeC
Q 021319          102 SQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (314)
Q Consensus       102 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (314)
                      ......+. ...++  .+++..+++++.|+.+.+||.+..... .. ..+...+..+.+++.+..++++..++.+.+|+.
T Consensus       182 ~~~~~~h~~~v~~~--s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~  259 (420)
T 4gga_A          182 LRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  259 (420)
T ss_dssp             EEEECCCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             EEEEeCCCCceEEE--eeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence            77665433 33344  456789999999999999998765432 22 234567889999999999999999999999998


Q ss_pred             CCCC----ceeeeeecccceEEEEECCCCC-EEEE--eeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319          179 PSLR----PLDTVVAHTAGCYCIAIDPMGR-YFAV--GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  251 (314)
Q Consensus       179 ~~~~----~~~~~~~~~~~i~~i~~~~~~~-~l~t--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  251 (314)
                      ...+    .+.....|...|.+++|+|.+. ++++  |+.|++|++||+.++.++..+..+ ..+.++.|+|+++.++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~  338 (420)
T 4gga_A          260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG  338 (420)
T ss_dssp             SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEE
T ss_pred             ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEE
Confidence            6543    3445667889999999999654 5554  567999999999999998887654 468999999999998876


Q ss_pred             c--CCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          252 S--EDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       252 s--~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +  .|+.|+|||+.+++++..+. |.+.|++|+|+|++.+||+||.|        |++|||++.
T Consensus       339 sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D--------~tvriWdv~  394 (420)
T 4gga_A          339 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD--------ETLRLWRCF  394 (420)
T ss_dssp             ECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT--------TEEEEECCS
T ss_pred             EecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC--------CeEEEEECC
Confidence            5  79999999999999998886 57799999999999999999988        689999984

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.8e-39  Score=279.71  Aligned_cols=277  Identities=12%  Similarity=0.155  Sum_probs=225.1

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~  101 (314)
                      .+++++|+|++++|++++.|+.|++|++......    ..+.+| ..+....|+|+ +++|++++.|+.|++||+.++++
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~----~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS----KMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDSNFNLQ  131 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT----TTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECTTSCEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccccee----eEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeCCCcce
Confidence            4558999999999999999999999998653211    123344 33444466776 57999999999999999998877


Q ss_pred             eeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCC
Q 021319          102 SQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP  179 (314)
Q Consensus       102 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  179 (314)
                      .... .....+.+++|+|++++|++++.|+.|++||+++.+.+.... +...+.+++|+|++..+++++.++.+++|+..
T Consensus       132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~  211 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG  211 (420)
T ss_dssp             EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence            6654 345667789999999999999999999999999887766654 56789999999999999999999999999998


Q ss_pred             CCCceeeeee---cccce---------------------EEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-eccc
Q 021319          180 SLRPLDTVVA---HTAGC---------------------YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEW  234 (314)
Q Consensus       180 ~~~~~~~~~~---~~~~i---------------------~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~  234 (314)
                      ..+.+..+..   +...+                     .+++|+|++++|++|+.||.|++||++++..+..+. .|..
T Consensus       212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  291 (420)
T 3vl1_A          212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC  291 (420)
T ss_dssp             TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS
T ss_pred             CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC
Confidence            8777766654   33334                     445568999999999999999999999887776664 4678


Q ss_pred             CeEEEEEccCCc-EEEEecCCceEEEEECCCCCe-EEEEe--ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          235 PVRTISFSHTGD-YIASASEDLFIDISNVHTGRT-VHQIP--CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       235 ~v~~~~~sp~~~-~l~s~s~d~~v~v~~~~~~~~-~~~~~--~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      +|.+++|+|+++ +|++|+.|+.|++||+.+++. +..+.  +...|+++.|+ ++.+|++++.|        |+++||+
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d--------~~v~iw~  362 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFD--------TSIKLDI  362 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEETTT--------EEEEEEE
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEecCC--------ccEEEEe
Confidence            899999999999 999999999999999998754 55554  45678888665 67899999977        6899999


Q ss_pred             ccC
Q 021319          311 FEN  313 (314)
Q Consensus       311 ~~~  313 (314)
                      ++.
T Consensus       363 ~~~  365 (420)
T 3vl1_A          363 ISD  365 (420)
T ss_dssp             ECC
T ss_pred             ccC
Confidence            753

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.8e-37  Score=280.71  Aligned_cols=283  Identities=18%  Similarity=0.242  Sum_probs=227.1

Q ss_pred             ceeeecccc---cEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCceeeEEe-e---cCCCCEEEEEEcCCCCCEEEE
Q 021319           13 SREYTGHKK---KVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIEL-R---GHADSVDQLCWDPKHADLIAT   84 (314)
Q Consensus        13 ~~~~~gH~~---~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~-~---~h~~~v~~l~~~~~~~~~l~s   84 (314)
                      .+.+.+|..   .|++++|+|+ +++|++++.|+.|++||+....    ....+ .   +|...|.+++|+ + +.+|++
T Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~  269 (615)
T 1pgu_A          196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE----FLKYIEDDQEPVQGGIFALSWL-D-SQKFAT  269 (615)
T ss_dssp             EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC----EEEECCBTTBCCCSCEEEEEES-S-SSEEEE
T ss_pred             eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC----EeEEecccccccCCceEEEEEc-C-CCEEEE
Confidence            355678998   9999999999 9999999999999999987532    22344 4   899999999999 4 579999


Q ss_pred             EeCCCcEEEEeCCCCceeeeEEec-----CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec------------
Q 021319           85 ASGDKTVRLWDARSGKCSQQAELS-----GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK------------  147 (314)
Q Consensus        85 ~~~D~~v~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------  147 (314)
                      ++.|+.|++||+++++........     .....+.+. ++..+++++.++.+.+||+++.+++....            
T Consensus       270 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  348 (615)
T 1pgu_A          270 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN  348 (615)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETT
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEec
Confidence            999999999999998877766544     334555554 77888888888888888876544432221            


Q ss_pred             --------------------------------------------------------------------------------
Q 021319          148 --------------------------------------------------------------------------------  147 (314)
Q Consensus       148 --------------------------------------------------------------------------------  147 (314)
                                                                                                      
T Consensus       349 ~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  428 (615)
T 1pgu_A          349 PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD  428 (615)
T ss_dssp             TTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred             CcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence                                                                                            


Q ss_pred             ----------------cCcceeeEEeccCCCeEEEEcC-CceEEEEeCCCCCce-eeeeecccceEEEEECCCCCEEEEe
Q 021319          148 ----------------FGYEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSLRPL-DTVVAHTAGCYCIAIDPMGRYFAVG  209 (314)
Q Consensus       148 ----------------~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~t~  209 (314)
                                      ....+.+++++  ++.++++.. ++.+++|+....+.. ..+..|...+++++|+|++++|+++
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  506 (615)
T 1pgu_A          429 LLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG  506 (615)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEc
Confidence                            11112222232  556666666 888888887665433 4566789999999999999999999


Q ss_pred             eCCCeEEEeeCCCcEEEEEeee-cccCeEEEEEcc----------CCcEEEEecCCceEEEEECCCC-CeEEEEe-ccCc
Q 021319          210 SADSLVSLWDISEMLCVRTFTK-LEWPVRTISFSH----------TGDYIASASEDLFIDISNVHTG-RTVHQIP-CRAA  276 (314)
Q Consensus       210 ~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~sp----------~~~~l~s~s~d~~v~v~~~~~~-~~~~~~~-~~~~  276 (314)
                      +.||.|++||+.+++.+..+.. |..+|.+++|+|          ++++||+++.|+.|++|++.++ +.+..+. |...
T Consensus       507 ~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~  586 (615)
T 1pgu_A          507 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG  586 (615)
T ss_dssp             ETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC
T ss_pred             CCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccc
Confidence            9999999999999999988887 999999999999          9999999999999999999987 6666654 5678


Q ss_pred             cceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          277 MNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       277 i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |++++|+|+++ |++++.|        |+++||+++.
T Consensus       587 v~~l~~s~~~~-l~s~~~d--------~~v~iw~~~~  614 (615)
T 1pgu_A          587 VNNLLWETPST-LVSSGAD--------ACIKRWNVVL  614 (615)
T ss_dssp             EEEEEEEETTE-EEEEETT--------SCEEEEEEC-
T ss_pred             eEEEEEcCCCC-eEEecCC--------ceEEEEeeec
Confidence            99999999999 9999977        6899999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.7e-37  Score=263.97  Aligned_cols=246  Identities=18%  Similarity=0.226  Sum_probs=197.3

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+.+.+|...|++++|+|++.+|+||+.|++|++||+.+..    ....+.+|...|.+++|+|++ .+|++++.|++|+
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~----~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~  143 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT----TYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIK  143 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC----EEEEEECCCSCEEEEEECSST-TEEEEEETTSCEE
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEE
Confidence            45678999999999999999999999999999999997532    334678999999999999975 6899999999999


Q ss_pred             EEeCCCCceeeeE---EecCceEEEEEccCC----------CEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEec
Q 021319           93 LWDARSGKCSQQA---ELSGENINITYKPDG----------THIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWN  158 (314)
Q Consensus        93 iwd~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~  158 (314)
                      +||+.........   .....+.+++|+|++          .++++++.|+.|++||.. .+.... ..+...+.+++|+
T Consensus       144 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s  222 (343)
T 2xzm_R          144 LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSIS  222 (343)
T ss_dssp             EEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEEC
T ss_pred             EEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEEC
Confidence            9999743322211   123446678899886          789999999999999954 344333 3456679999999


Q ss_pred             cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE--Eee------
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR--TFT------  230 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~--~~~------  230 (314)
                      |+++++++++.++.+++|+............+...+.+++|+|++++++++ .|+.|++||+.+.....  .+.      
T Consensus       223 ~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~  301 (343)
T 2xzm_R          223 PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITK  301 (343)
T ss_dssp             TTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchh
Confidence            999999999999999999985433222233456679999999999988755 57789999997654332  333      


Q ss_pred             -----ecccCeEEEEEccCCcEEEEecCCceEEEEECCCC
Q 021319          231 -----KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  265 (314)
Q Consensus       231 -----~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~  265 (314)
                           +|...+.+++|+|++++|++|+.|+.|++|++.++
T Consensus       302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                 46667999999999999999999999999998654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.1e-37  Score=264.80  Aligned_cols=275  Identities=11%  Similarity=0.147  Sum_probs=210.6

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      .+.+|.+.|++++|+|||++|++|+.|+ ++||++++..    ..  ...+...+..+.+.+..+.++++++.|++|++|
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA----HI--MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE----EE--EEEECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc----ee--eeeecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence            4578999999999999999999998775 7899986421    11  122223477778887755455788889999999


Q ss_pred             eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC-eEeeeeccCcceeeEEeccCCCeEEE--EcCCc
Q 021319           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFL--TTGNG  171 (314)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g  171 (314)
                      |..++++.........+.++.++++.  ++++ .++.+++||+.+. +.+.....  +...+++++  ..+++  +..+|
T Consensus        87 d~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g  159 (355)
T 3vu4_A           87 DDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLG  159 (355)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTT
T ss_pred             ECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCc
Confidence            99999988888877788889988764  4443 4789999999887 55554443  334455555  55655  47899


Q ss_pred             eEEEEeCCCCC---------------c-eeeeeecccceEEEEECCCCCEEEEeeCCCe-EEEeeCCCcEEEEEee-e-c
Q 021319          172 TVEVLTYPSLR---------------P-LDTVVAHTAGCYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFT-K-L  232 (314)
Q Consensus       172 ~~~~~~~~~~~---------------~-~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~-~-~  232 (314)
                      .+++|+....+               + +..+.+|...|++++|+|++++||+|+.|++ |++||+++++++.++. + |
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h  239 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD  239 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence            99999997644               2 6678899999999999999999999999998 9999999999999998 4 8


Q ss_pred             ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEE--E--------------------Eec--cCccceeEEcCCCCe
Q 021319          233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH--Q--------------------IPC--RAAMNSVEWNPKYNL  288 (314)
Q Consensus       233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~--~--------------------~~~--~~~i~~v~~~~~~~~  288 (314)
                      ..+|.+++|+|++++|++++.|+.|++||+..+....  .                    ++.  ......++|+|+++.
T Consensus       240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~  319 (355)
T 3vu4_A          240 RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL  319 (355)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE
T ss_pred             CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE
Confidence            8999999999999999999999999999997653211  1                    000  112477999999999


Q ss_pred             eEEEecCCcccccccceEEeccc
Q 021319          289 LAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       289 la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      |++++.|        |.+++|.+
T Consensus       320 l~~~~~d--------g~~~~~~~  334 (355)
T 3vu4_A          320 VVVWPHT--------RMIETFKV  334 (355)
T ss_dssp             EEEETTT--------TEEEEEEE
T ss_pred             EEEEeCC--------CeEEEEEE
Confidence            9999987        45667665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.3e-36  Score=265.98  Aligned_cols=280  Identities=20%  Similarity=0.330  Sum_probs=240.3

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+.+.+|.+.|.+++|+  +++|++|+.|++|++||+++.    .....+.+|...|.++.|++   +.+++|+.|++|+
T Consensus       152 ~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~  222 (445)
T 2ovr_B          152 LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG----ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLR  222 (445)
T ss_dssp             EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEE
T ss_pred             EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC----cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEE
Confidence            45678999999999997  679999999999999998753    23346789999999999963   5799999999999


Q ss_pred             EEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCC
Q 021319           93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      +||+.++++......+ ..+.++.+  +++.+++++.|+.+.+||+++.+.+.... +...+.++.+  ++..+++++.+
T Consensus       223 ~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d  298 (445)
T 2ovr_B          223 VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLD  298 (445)
T ss_dssp             EEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCC
Confidence            9999999877766543 34456666  78899999999999999999988877765 4556778877  88999999999


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee---cccCeEEEEEccCCcE
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---LEWPVRTISFSHTGDY  247 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~sp~~~~  247 (314)
                      +.+++|+....+.+..+.+|...+.+++++  ++++++|+.||.|++||+++++++..+..   |..+|.+++|+  +++
T Consensus       299 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  374 (445)
T 2ovr_B          299 TSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF  374 (445)
T ss_dssp             SCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred             CeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCE
Confidence            999999999988888888999989988874  67999999999999999999999888876   77789999995  689


Q ss_pred             EEEecCCceEEEEECCCCCeEEEE------eccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          248 IASASEDLFIDISNVHTGRTVHQI------PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~~~~~~~~------~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |++|+.|+.|++||+.+++.+..+      .+.+.|.+++|+|++.+||+++.|+.    +...+.||+|+.
T Consensus       375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~----~~~~l~v~df~~  442 (445)
T 2ovr_B          375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT----EETKLLVLDFDV  442 (445)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS----SCCEEEEEECCC
T ss_pred             EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC----CccEEEEEECCC
Confidence            999999999999999999998887      34568999999999999999999864    234588999965

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1e-36  Score=256.83  Aligned_cols=246  Identities=24%  Similarity=0.368  Sum_probs=213.5

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+.+.+|...|.+++|+|++++|++|+.|+.|++||++...    ....+.+|...|.+++|+|++ ++|++|+.|++|+
T Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~  132 (312)
T 4ery_A           58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVR  132 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEE
T ss_pred             chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Confidence            45678999999999999999999999999999999997532    334678999999999999974 6999999999999


Q ss_pred             EEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec--cCcceeeEEeccCCCeEEEEcC
Q 021319           93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      +||++++++......+ ..+..++|+|+++++++++.|+.+++||+++.+.+....  ....+..++|+|+++.+++++.
T Consensus       133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
T 4ery_A          133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  212 (312)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred             EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence            9999999877766543 456679999999999999999999999999887766543  3456888999999999999999


Q ss_pred             CceEEEEeCCCCCceeeeeecccceE---EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCc
Q 021319          170 NGTVEVLTYPSLRPLDTVVAHTAGCY---CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD  246 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~~~~~i~---~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  246 (314)
                      ++.+++|++...+.+..+.+|.....   .....+++++|++|+.||.|++||+.+...++.+.+|...|.+++|+|+++
T Consensus       213 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  292 (312)
T 4ery_A          213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN  292 (312)
T ss_dssp             TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSS
T ss_pred             CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCC
Confidence            99999999998888777777765533   233446789999999999999999999999999999999999999999999


Q ss_pred             EEEEec--CCceEEEEECC
Q 021319          247 YIASAS--EDLFIDISNVH  263 (314)
Q Consensus       247 ~l~s~s--~d~~v~v~~~~  263 (314)
                      +|++++  .|+.|++|+..
T Consensus       293 ~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          293 IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEEEECTTTCCEEEEECC
T ss_pred             ceEEEEccCCccEEEecCC
Confidence            999997  69999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.7e-36  Score=269.04  Aligned_cols=283  Identities=20%  Similarity=0.290  Sum_probs=231.7

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-CCCEEEEEeCCCcE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTV   91 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~D~~v   91 (314)
                      .+.+.+|.+.|.+++|+|++ +|++|+.||+|++||+++.    .....+.+|...|.+++|++. ++.++++++.|++|
T Consensus       155 ~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i  229 (464)
T 3v7d_B          155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG----CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL  229 (464)
T ss_dssp             EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred             EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC----cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence            35577999999999999988 9999999999999999753    234467889999999999852 34789999999999


Q ss_pred             EEEeCCCCceeeeE---------------------EecC-ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-c
Q 021319           92 RLWDARSGKCSQQA---------------------ELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-F  148 (314)
Q Consensus        92 ~iwd~~~~~~~~~~---------------------~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~  148 (314)
                      ++||++++......                     ...+ .....+++++++.+++++.|+.|++||+++.+++.... +
T Consensus       230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  309 (464)
T 3v7d_B          230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH  309 (464)
T ss_dssp             EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence            99999876533211                     1111 11123457889999999999999999999988877654 5


Q ss_pred             CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE
Q 021319          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (314)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~  228 (314)
                      ...+.++.|+++++.+++++.+|.+++|+....+++..+.+|...+.+++++  ++++++++.||.|++||+.+......
T Consensus       310 ~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence            6679999999999999999999999999999988888999999999999997  58999999999999999998876655


Q ss_pred             eeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE--EeccCccceeEEcCCCCeeEEEecCCcccccccceE
Q 021319          229 FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF  306 (314)
Q Consensus       229 ~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~--~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~  306 (314)
                      . .+...+..++|+|++++|++++ |+.|++||+.+++.++.  ..+...|.+++|+ ...+++++++|+..      .+
T Consensus       388 ~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~------~i  458 (464)
T 3v7d_B          388 Y-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQS------FL  458 (464)
T ss_dssp             E-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEE------EE
T ss_pred             e-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeE------EE
Confidence            4 3556788899999999999999 89999999999998875  3456789999998 34556666666543      36


Q ss_pred             Eeccc
Q 021319          307 RIYGF  311 (314)
Q Consensus       307 ~~~~~  311 (314)
                      ++|+|
T Consensus       459 ~~ldf  463 (464)
T 3v7d_B          459 EILDF  463 (464)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            67766

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-37  Score=294.02  Aligned_cols=283  Identities=14%  Similarity=0.139  Sum_probs=217.5

Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceee-------EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-------IELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~-------~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      |.+.|++++|+|++++|++|+.||+|++||++.........       ..+.+|...|.+++|+|.+...+++|+.|+.|
T Consensus        97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v  176 (902)
T 2oaj_A           97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL  176 (902)
T ss_dssp             CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE
Confidence            67899999999999999999999999999997532100000       13467999999999999766789999999999


Q ss_pred             EEEeCCCCceeeeEEec-------------------CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee--ec---
Q 021319           92 RLWDARSGKCSQQAELS-------------------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RK---  147 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~---  147 (314)
                       +||++++++...+..+                   ..+.+++|+|+|++|++++.|+.|++||+++.+++..  ..   
T Consensus       177 -lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~  255 (902)
T 2oaj_A          177 -TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETE  255 (902)
T ss_dssp             -EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSC
T ss_pred             -EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccc
Confidence             9999998877665433                   4477899999999999999999999999866443221  00   


Q ss_pred             --------------cCcceeeEEe--------------------------------------------------------
Q 021319          148 --------------FGYEVNEIAW--------------------------------------------------------  157 (314)
Q Consensus       148 --------------~~~~~~~~~~--------------------------------------------------------  157 (314)
                                    +...+..++|                                                        
T Consensus       256 ~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  335 (902)
T 2oaj_A          256 INVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMK  335 (902)
T ss_dssp             TTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEE
T ss_pred             cCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceE
Confidence                          0001111111                                                        


Q ss_pred             --------------------------------------------------------------------------------
Q 021319          158 --------------------------------------------------------------------------------  157 (314)
Q Consensus       158 --------------------------------------------------------------------------------  157 (314)
                                                                                                      
T Consensus       336 ~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~  415 (902)
T 2oaj_A          336 IFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNK  415 (902)
T ss_dssp             EECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHH
T ss_pred             EEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHH
Confidence                                                                                            


Q ss_pred             ----------------------------ccCCCeEEEEcCCceEEEEeCCCCCce--eee---------eecccceEEEE
Q 021319          158 ----------------------------NMTGEMFFLTTGNGTVEVLTYPSLRPL--DTV---------VAHTAGCYCIA  198 (314)
Q Consensus       158 ----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~---------~~~~~~i~~i~  198 (314)
                                                  +|+++.+++++.|++|++|+.......  ..+         .+|...|++++
T Consensus       416 ~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva  495 (902)
T 2oaj_A          416 LWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS  495 (902)
T ss_dssp             HHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE
T ss_pred             HHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE
Confidence                                        233445566666777777776543211  111         15777899999


Q ss_pred             ECCCCCEEEEeeCCCeEEEeeCCCc---------------------------------------------EEEEEeeecc
Q 021319          199 IDPMGRYFAVGSADSLVSLWDISEM---------------------------------------------LCVRTFTKLE  233 (314)
Q Consensus       199 ~~~~~~~l~t~~~dg~i~vwd~~~~---------------------------------------------~~~~~~~~~~  233 (314)
                      |+|++++||+|+.||+|++||+.++                                             +++.++.+|.
T Consensus       496 fspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~  575 (902)
T 2oaj_A          496 FAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK  575 (902)
T ss_dssp             EETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS
T ss_pred             ecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC
Confidence            9999999999999999999998754                                             3467788899


Q ss_pred             cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE-------eccCccceeEEc-----CCC---CeeEEEecCCcc
Q 021319          234 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-------PCRAAMNSVEWN-----PKY---NLLAYAGDDKNK  298 (314)
Q Consensus       234 ~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-------~~~~~i~~v~~~-----~~~---~~la~~~~d~~~  298 (314)
                      .+|.+++|||+| +||+|+.|+.|++||+.++..+...       .|.+.|++|+|+     ||+   .+|++++.|   
T Consensus       576 ~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D---  651 (902)
T 2oaj_A          576 GKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM---  651 (902)
T ss_dssp             CSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT---
T ss_pred             CcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC---
Confidence            999999999999 9999999999999999887766432       234569999999     885   899999988   


Q ss_pred             cccccceEEeccc
Q 021319          299 YQADEGVFRIYGF  311 (314)
Q Consensus       299 ~~~~~~~~~~~~~  311 (314)
                           |++++|++
T Consensus       652 -----~tv~~wd~  659 (902)
T 2oaj_A          652 -----GEVITYKI  659 (902)
T ss_dssp             -----SEEEEEEE
T ss_pred             -----CcEEEEEE
Confidence                 68889987

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2e-36  Score=266.67  Aligned_cols=270  Identities=22%  Similarity=0.353  Sum_probs=226.6

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~   96 (314)
                      .+|...|.+++|  ++++|++|+.||.|++||+.+..    ....+.+|...|.+++|+   ++++++|+.||+|++||+
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE----CKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC----EEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEES
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe----EEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEEC
Confidence            457778999987  79999999999999999987532    334678999999999983   469999999999999999


Q ss_pred             CCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee---e-eccCcceeeEEeccCCCeEEEEcCCc
Q 021319           97 RSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---R-RKFGYEVNEIAWNMTGEMFFLTTGNG  171 (314)
Q Consensus        97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~g  171 (314)
                      .++++......+ ..+.+++++  +..+++++.|+.|.+||+++.+...   . ..+...+.++.+  +++.+++++.+|
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg  276 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR  276 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             CCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence            999887766543 445567775  5699999999999999998765432   2 234456777777  788999999999


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA  251 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  251 (314)
                      .+++|+....+.+..+.+|...+.+++++  ++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+|++|
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg  352 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG  352 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence            99999999998888899999999999994  789999999999999999999999999999999999998  78999999


Q ss_pred             cCCceEEEEECCCCC---------eEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          252 SEDLFIDISNVHTGR---------TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       252 s~d~~v~v~~~~~~~---------~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +.|+.|++||+.+++         .+..+. +.+.|++++|  ++.+|++++.|        |+++||++++
T Consensus       353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D--------g~i~iwd~~~  414 (435)
T 1p22_A          353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD--------DTILIWDFLN  414 (435)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS--------SEEEEEC---
T ss_pred             eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCC--------CEEEEEECCC
Confidence            999999999987655         555554 5678999999  67889999977        6899999954

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=257.90  Aligned_cols=245  Identities=20%  Similarity=0.271  Sum_probs=187.2

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCC---CceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH---GKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~---~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      +|.+.|++|+|+|++++|++|+.|++|+||+++....   .......+.+|...|.+++|+|+ +++|++|+.|++|++|
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iw  134 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIW  134 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEE
Confidence            3999999999999999999999999999999853211   11223457899999999999997 4799999999999999


Q ss_pred             eCCCC----ceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC--eEeeee-ccCcceeeEEeccC--CCeE
Q 021319           95 DARSG----KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRR-KFGYEVNEIAWNMT--GEMF  164 (314)
Q Consensus        95 d~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~-~~~~~~~~~~~~~~--~~~~  164 (314)
                      |++..    ++...+. ....+.+++|+|++.+|++++.|+.|++||++..  +++... .+...+.+++|+|+  +..+
T Consensus       135 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  214 (330)
T 2hes_X          135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL  214 (330)
T ss_dssp             ECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred             eccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence            99532    2333332 3345678999999999999999999999998765  344443 34567899999998  6788


Q ss_pred             EEEcCCceEEEEeCCCC--------Cceeeeee-cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE--EEE-Eeeec
Q 021319          165 FLTTGNGTVEVLTYPSL--------RPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML--CVR-TFTKL  232 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~--------~~~~~~~~-~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~-~~~~~  232 (314)
                      ++++.|+.+++|++...        .....+.. |...|++++|++++ +|++++.||.|++||..++.  .+. ....|
T Consensus       215 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h  293 (330)
T 2hes_X          215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH  293 (330)
T ss_dssp             EEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred             EEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence            99999999999987543        12233333 88899999999765 88999999999999997763  232 23456


Q ss_pred             cc-CeEEEEEcc--CCcEEEEecCCceEEEEECCC
Q 021319          233 EW-PVRTISFSH--TGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       233 ~~-~v~~~~~sp--~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      .. .|.+++|+|  ++++|||||.|+.|++|++.+
T Consensus       294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            65 899999999  789999999999999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=289.74  Aligned_cols=234  Identities=11%  Similarity=0.079  Sum_probs=189.3

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .....||.+.|++++|+|++++||+|+.||+|+||+....     .......|..+|.+++|+| + .+|++++.|++|+
T Consensus        10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-----~~~~~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~   82 (902)
T 2oaj_A           10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-----EVVIKLEDRSAIKEMRFVK-G-IYLVVINAKDTVY   82 (902)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-----EEEEECSSCCCEEEEEEET-T-TEEEEEETTCEEE
T ss_pred             cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-----EEEEEcCCCCCEEEEEEcC-C-CEEEEEECcCeEE
Confidence            3445689999999999999999999999999999987532     1122345888999999999 4 5899999999999


Q ss_pred             EEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee------------eccCcceeeEEeccC
Q 021319           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR------------RKFGYEVNEIAWNMT  160 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------------~~~~~~~~~~~~~~~  160 (314)
                      +||+.++++...+.....+.+++|+|+++++++|+.|+.|++||++..+....            ..+...+.+++|+|+
T Consensus        83 lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           83 VLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             EEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            99999998887777677788999999999999999999999999988765311            123457899999996


Q ss_pred             -CCeEEEEcCCceEEEEeCCCCCceeeeeec------------------ccceEEEEECCCCCEEEEeeCCCeEEEeeCC
Q 021319          161 -GEMFFLTTGNGTVEVLTYPSLRPLDTVVAH------------------TAGCYCIAIDPMGRYFAVGSADSLVSLWDIS  221 (314)
Q Consensus       161 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------------~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~  221 (314)
                       +..++++..++.+ +|++...+++..+..|                  ...|++++|+|+|++||+|+.||.|++||++
T Consensus       163 ~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          163 DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence             4688899999999 9999887777666554                  4679999999999999999999999999999


Q ss_pred             CcEEEEE--ee---e-------------cccCeEEEEEc----cCC-cEEEEecCC
Q 021319          222 EMLCVRT--FT---K-------------LEWPVRTISFS----HTG-DYIASASED  254 (314)
Q Consensus       222 ~~~~~~~--~~---~-------------~~~~v~~~~~s----p~~-~~l~s~s~d  254 (314)
                      +++++..  +.   .             +..+|.+++|+    |++ .+|++|+.|
T Consensus       242 ~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          242 SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            8877653  21   1             23368888885    443 456666443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=262.03  Aligned_cols=251  Identities=19%  Similarity=0.271  Sum_probs=207.6

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-CCCEEEEEeCCCcE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTV   91 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~D~~v   91 (314)
                      .+.+.+|.+.|++++|+|++++|++|+.|+.|+||+++...  ......+.+|...|.+++|++. ++++|++++.|+.|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            45688999999999999999999999999999999986321  2233467899999999999865 25799999999999


Q ss_pred             EEEeCCCCce--eeeEE-ecCceEEEEEccC--CCEEEEEeCCCcEEEEEccCCeEe---eeeccCcceeeEEecc----
Q 021319           92 RLWDARSGKC--SQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPI---HRRKFGYEVNEIAWNM----  159 (314)
Q Consensus        92 ~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~----  159 (314)
                      ++||+.+++.  ..... ....+.+++|+|+  +.++++++.|+.+.+||++.....   ....+...+.++.|+|    
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            9999998863  33332 3456778999999  999999999999999999876322   2234566789999999    


Q ss_pred             ---------CCCeEEEEcCCceEEEEeCCCCC----ceeeeeecccceEEEEECCC---CCEEEEeeCCCeEEEeeCCCc
Q 021319          160 ---------TGEMFFLTTGNGTVEVLTYPSLR----PLDTVVAHTAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEM  223 (314)
Q Consensus       160 ---------~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~i~~i~~~~~---~~~l~t~~~dg~i~vwd~~~~  223 (314)
                               ++..+++++.++.+++|++....    ....+.+|...+++++|+|+   +++|++++.||.|++||+...
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence                     68999999999999999986554    33456679999999999999   899999999999999999875


Q ss_pred             E---EEEE--eeecccCeEEEEEccCCcEEEEecCCceEEEEECCCC
Q 021319          224 L---CVRT--FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  265 (314)
Q Consensus       224 ~---~~~~--~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~  265 (314)
                      .   ....  ...+...|.+++|+|++++|++++.|+.|++|++..+
T Consensus       242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            2   2222  2347788999999999999999999999999998744

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=9.9e-37  Score=265.91  Aligned_cols=281  Identities=16%  Similarity=0.204  Sum_probs=224.8

Q ss_pred             cEEEEEECCCCCEE-EEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC-
Q 021319           22 KVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-   99 (314)
Q Consensus        22 ~V~~v~~s~~g~~l-~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~-   99 (314)
                      ....++++|+...+ ++++.||.|+||+++...........+.+|...|.+++|+|.++++|++|+.|++|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            44568888887654 4578999999999864321111122467899999999999955689999999999999999887 


Q ss_pred             ------ceeeeEE-ecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeec---cCcceeeEEeccCCCeEEEEc
Q 021319          100 ------KCSQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMFFLTT  168 (314)
Q Consensus       100 ------~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  168 (314)
                            +...... ....+.+++|+|++ ++|++++.|+.|.+||+++.+.+....   +...+.+++|+|++..+++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  3333433 34566789999998 699999999999999999998887762   566799999999999999999


Q ss_pred             CCceEEEEeCCCCCceeee-eecccc-eEEEEECCCCCEEEEe---eCCCeEEEeeCCCcEE-EEEee-ecccCeEEEEE
Q 021319          169 GNGTVEVLTYPSLRPLDTV-VAHTAG-CYCIAIDPMGRYFAVG---SADSLVSLWDISEMLC-VRTFT-KLEWPVRTISF  241 (314)
Q Consensus       169 ~~g~~~~~~~~~~~~~~~~-~~~~~~-i~~i~~~~~~~~l~t~---~~dg~i~vwd~~~~~~-~~~~~-~~~~~v~~~~~  241 (314)
                      .++.+++|+....+.+..+ ..|... +.+++|+|++++|++|   +.|+.|++||+++... +.... .+...+.+++|
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  275 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF  275 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence            9999999999988877777 677765 8999999999999999   7999999999987543 22222 45667999999


Q ss_pred             ccCCcEEE-EecCCceEEEEECCCCCe-EE---EEeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          242 SHTGDYIA-SASEDLFIDISNVHTGRT-VH---QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       242 sp~~~~l~-s~s~d~~v~v~~~~~~~~-~~---~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +|++++|+ +++.|+.|++|++.+++. +.   .+.+...|++++|+|++.++++++          +.+++|.++
T Consensus       276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~----------~~~~~~~l~  341 (402)
T 2aq5_A          276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKC----------EIARFYKLH  341 (402)
T ss_dssp             ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGT----------EEEEEEEEE
T ss_pred             cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecc----------eeEEEEEcC
Confidence            99999996 566899999999998874 33   333458899999999998886533          467777764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.1e-36  Score=293.82  Aligned_cols=287  Identities=19%  Similarity=0.253  Sum_probs=240.5

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCCCcE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV   91 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D~~v   91 (314)
                      ...+.+|.+.|.+++|+|++++|++|+.|++|+|||+.+..    ....+.+|...|.+++|+|.+ ..++++|+.|+.|
T Consensus       650 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v  725 (1249)
T 3sfz_A          650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK----LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL  725 (1249)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCE
T ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc----eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeE
Confidence            45678999999999999999999999999999999997632    334678999999999999853 4588999999999


Q ss_pred             EEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee------------------------
Q 021319           92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR------------------------  146 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------------  146 (314)
                      ++||+.++++...... ...+.+++|+|+++.+++++.|+.+++||+++.+.....                        
T Consensus       726 ~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  805 (1249)
T 3sfz_A          726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS  805 (1249)
T ss_dssp             EEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred             EEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence            9999999988776543 455678999999999999999999999999776543221                        


Q ss_pred             --------------------------------ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccce
Q 021319          147 --------------------------------KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC  194 (314)
Q Consensus       147 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i  194 (314)
                                                      .+...+.+++|+|++..+++++.++.+++|+......+..+.+|...|
T Consensus       806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v  885 (1249)
T 3sfz_A          806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV  885 (1249)
T ss_dssp             BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccce
Confidence                                            122346778899999999999999999999999888888888999999


Q ss_pred             EEEEECCCCCEEEEeeCCCeEEEeeCCC----------------------------------------------------
Q 021319          195 YCIAIDPMGRYFAVGSADSLVSLWDISE----------------------------------------------------  222 (314)
Q Consensus       195 ~~i~~~~~~~~l~t~~~dg~i~vwd~~~----------------------------------------------------  222 (314)
                      ++++|+|+++++++++.||.|++||+.+                                                    
T Consensus       886 ~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  965 (1249)
T 3sfz_A          886 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS  965 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence            9999999999999999999999998532                                                    


Q ss_pred             ---------------------------cEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccC
Q 021319          223 ---------------------------MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA  275 (314)
Q Consensus       223 ---------------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~  275 (314)
                                                 +..+..+.+|..+|.+++|+|++++|++++.|+.|++|++.+++......+..
T Consensus       966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1045 (1249)
T 3sfz_A          966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1045 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSS
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCC
Confidence                                       12223344577789999999999999999999999999999988776666778


Q ss_pred             ccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          276 AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       276 ~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      .|.+++|+|++ .+++++.|        |++++|++.
T Consensus      1046 ~v~~~~~~~~~-~l~~~~~d--------g~v~vwd~~ 1073 (1249)
T 3sfz_A         1046 TVKDFRLLQDS-RLLSWSFD--------GTVKVWNVI 1073 (1249)
T ss_dssp             CEEEEEECSSS-EEEEEESS--------SEEEEEETT
T ss_pred             cEEEEEEcCCC-cEEEEECC--------CcEEEEECC
Confidence            99999999966 45678866        578899874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-35  Score=260.52  Aligned_cols=274  Identities=21%  Similarity=0.369  Sum_probs=232.8

Q ss_pred             ceeeecccccE-EEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           13 SREYTGHKKKV-HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        13 ~~~~~gH~~~V-~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      .+.+.+|.+.| .++  +++|++|++|+.||+|++||+.+..    ....+.+|...|.++.|++   +++++|+.|++|
T Consensus       111 ~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i  181 (445)
T 2ovr_B          111 PKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGK----CLRTLVGHTGGVWSSQMRD---NIIISGSTDRTL  181 (445)
T ss_dssp             CEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCC----EEEECCCCSSCEEEEEEET---TEEEEEETTSCE
T ss_pred             eEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCc----EEEEEcCCCCCEEEEEecC---CEEEEEeCCCeE
Confidence            45688998864 554  4578999999999999999987532    3346789999999999973   589999999999


Q ss_pred             EEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcC
Q 021319           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      ++||+.++++......+ ..+.++.+  +++.+++++.|+.+.+||+++.+.+.... +...+.++.+  ++..+++++.
T Consensus       182 ~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~  257 (445)
T 2ovr_B          182 KVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY  257 (445)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred             EEEECCcCcEEEEECCCCCcEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence            99999999877766543 34556666  46789999999999999999888776653 4566788877  7889999999


Q ss_pred             CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEE
Q 021319          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA  249 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  249 (314)
                      +|.+++|+....+.+..+.+|...+.++++  +++++++++.||.|++||+++++++..+..|...+.++++  ++++|+
T Consensus       258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~  333 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILV  333 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEE
T ss_pred             CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEE
Confidence            999999999888888888899999999999  7889999999999999999999999999989888887776  567999


Q ss_pred             EecCCceEEEEECCCCCeEEEEe----ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          250 SASEDLFIDISNVHTGRTVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       250 s~s~d~~v~v~~~~~~~~~~~~~----~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +|+.|+.|++||+.+++.+..+.    +...|++++|+  +++|++++.|        |+++||+++.
T Consensus       334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d--------g~v~iwd~~~  391 (445)
T 2ovr_B          334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD--------GTVKLWDLKT  391 (445)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT--------SEEEEEETTT
T ss_pred             EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC--------CeEEEEECCC
Confidence            99999999999999999988876    56689999996  5789999977        6888998853

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.7e-36  Score=261.32  Aligned_cols=252  Identities=15%  Similarity=0.206  Sum_probs=217.2

Q ss_pred             ceeeecccccEEEEEECCC----C---CEEEEeeCCCcEEEeecCCCCCC-ceeeEEeecC-----CCCEEEEEEc----
Q 021319           13 SREYTGHKKKVHSVAWNCT----G---TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGH-----ADSVDQLCWD----   75 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~----g---~~l~s~~~D~~v~iw~~~~~~~~-~~~~~~~~~h-----~~~v~~l~~~----   75 (314)
                      ...+.+|...|++++|+|+    +   ++|++++.|+.|++|+++..... ......+.+|     ...|.+++|+    
T Consensus        55 ~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred             ceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC
Confidence            5567799999999999999    9   99999999999999999764321 1113456778     5899999999    


Q ss_pred             CCCCCE-EEEEeCCCcEEEEeCCC------Cceee-----eEE--------ecCceEEEEEccCCCEEEEEeCCCcEEEE
Q 021319           76 PKHADL-IATASGDKTVRLWDARS------GKCSQ-----QAE--------LSGENINITYKPDGTHIAVGNRDDELTIL  135 (314)
Q Consensus        76 ~~~~~~-l~s~~~D~~v~iwd~~~------~~~~~-----~~~--------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~  135 (314)
                      |++ .+ |++++.|+.|++||+++      ++...     .+.        ....+.+++|+|++ .+++++.|+.+.+|
T Consensus       135 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          135 RLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS  212 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred             CCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence            875 67 99999999999999987      55443     332        24456789999999 99999999999999


Q ss_pred             EccCCeEeeeecc-------CcceeeEEeccCCCeEEEEcCC---ceEEEEeCCCCCceeeeee-------------ccc
Q 021319          136 DVRKFKPIHRRKF-------GYEVNEIAWNMTGEMFFLTTGN---GTVEVLTYPSLRPLDTVVA-------------HTA  192 (314)
Q Consensus       136 d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~-------------~~~  192 (314)
                      |+++.+++.....       ...+.+++|+|++..+++++.+   +.+++|+....+++..+..             |..
T Consensus       213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred             ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence            9999888877664       7789999999999999999999   9999999998888888888             999


Q ss_pred             ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee------ec---------------ccCeEEEEEccCC------
Q 021319          193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT------KL---------------EWPVRTISFSHTG------  245 (314)
Q Consensus       193 ~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~------~~---------------~~~v~~~~~sp~~------  245 (314)
                      .+.+++|+|++++|++++.||.|++||+.+++++..+.      .|               ..+|.+++|+|++      
T Consensus       293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~  372 (397)
T 1sq9_A          293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG  372 (397)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc
Confidence            99999999999999999999999999999999999998      77               8899999999998      


Q ss_pred             ----cEEEEecCCceEEEEECCCCC
Q 021319          246 ----DYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       246 ----~~l~s~s~d~~v~v~~~~~~~  266 (314)
                          ++|++++.|+.|++|++.+|+
T Consensus       373 ~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          373 ADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccceEEEecCCCcEEEEEcCCCC
Confidence                799999999999999998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.6e-36  Score=257.46  Aligned_cols=240  Identities=16%  Similarity=0.246  Sum_probs=202.9

Q ss_pred             ccccEEEEEECCC----CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           19 HKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        19 H~~~V~~v~~s~~----g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      |...|++++|+|+    +.+|++|+.|+.|++||+++..    ....+.+|...|.+++|+|.++++|++++.|+.|++|
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw  143 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ----CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW  143 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC----EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce----EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            6678999999999    6799999999999999987532    2345778999999999999556899999999999999


Q ss_pred             eCCCCceeeeE----EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-----------------------
Q 021319           95 DARSGKCSQQA----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----------------------  147 (314)
Q Consensus        95 d~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----------------------  147 (314)
                      |+++++.....    .....+.+++|+|++++|++++.|+.+.+||+++.+......                       
T Consensus       144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             ETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             EeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence            99998877665    345667789999999999999999999999998754432221                       


Q ss_pred             ------cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc--------------eeeeeecccceEEEEECCC--CCE
Q 021319          148 ------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP--------------LDTVVAHTAGCYCIAIDPM--GRY  205 (314)
Q Consensus       148 ------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------~~~~~~~~~~i~~i~~~~~--~~~  205 (314)
                            +...+.++.|+  ++.+++++.++.+++|+....+.              +..+..|...+++++|+|+  +++
T Consensus       224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  301 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM  301 (366)
T ss_dssp             EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred             cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE
Confidence                  45568888888  78999999999999999876543              5566778889999999999  999


Q ss_pred             EEEeeCCCeEEEeeCCCcE----EEEEeeec--ccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          206 FAVGSADSLVSLWDISEML----CVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       206 l~t~~~dg~i~vwd~~~~~----~~~~~~~~--~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      |++|+.||.|++||+.+++    ....+..|  ..+|.+++|+|++++|++++.|+.|++||+.+
T Consensus       302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            9999999999999998764    34466666  68999999999999999999999999999753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.2e-35  Score=247.12  Aligned_cols=245  Identities=18%  Similarity=0.268  Sum_probs=208.2

Q ss_pred             eEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee-----eeEE-ecCceEEEEEccCCCEEEEEeCCCcE
Q 021319           59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS-----QQAE-LSGENINITYKPDGTHIAVGNRDDEL  132 (314)
Q Consensus        59 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i  132 (314)
                      ...++||.+.|++++|+|+++++|+|||.|++|++||+.+.+..     ..+. ....+.+++|+|++++|++++.|+.+
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            34688999999999999987789999999999999998766432     2222 23456789999999999999999999


Q ss_pred             EEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc-eeeeeecccceEEEEECCCC--CEEEE
Q 021319          133 TILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP-LDTVVAHTAGCYCIAIDPMG--RYFAV  208 (314)
Q Consensus       133 ~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~--~~l~t  208 (314)
                      .+|+........... .........+++.+..+++++.++.+.+|+...... .....+|...+.+++|++++  .++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            999998877665543 345667788899999999999999999999865443 33445788899999998865  57899


Q ss_pred             eeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCe
Q 021319          209 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNL  288 (314)
Q Consensus       209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  288 (314)
                      ++.|+.|++||+.+++++..+.+|..+|.+++|+|++++|++|+.|+.|++||+.+++.+..+.....+.+++|+|++.+
T Consensus       191 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  270 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW  270 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSE
T ss_pred             EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999888889999999998866


Q ss_pred             eEEEecCCcccccccceEEecccc
Q 021319          289 LAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       289 la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      + +++.|        |.++||+++
T Consensus       271 ~-~~~~d--------~~i~iwd~~  285 (340)
T 4aow_A          271 L-CAATG--------PSIKIWDLE  285 (340)
T ss_dssp             E-EEEET--------TEEEEEETT
T ss_pred             e-eccCC--------CEEEEEECC
Confidence            5 45555        578888875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-35  Score=260.18  Aligned_cols=271  Identities=13%  Similarity=0.132  Sum_probs=216.5

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC-ceee---------------------------------------
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKD---------------------------------------   59 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~-~~~~---------------------------------------   59 (314)
                      ..++++++|+|+|++|+++ .++.|++||+.++... ....                                       
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4578999999999966665 5789999998654300 0000                                       


Q ss_pred             -------------EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC--CCceeeeEE---ecCceEEEEEccCCC
Q 021319           60 -------------IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAE---LSGENINITYKPDGT  121 (314)
Q Consensus        60 -------------~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~--~~~~~~~~~---~~~~~~~~~~~~~~~  121 (314)
                                   ...++|...|.+++|+|++..++++++.|++|++||+.  ++.+...+.   ....+.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                         01124566899999999865345899999999999998  777766653   345677899999999


Q ss_pred             EEEEEeCCCcEEEEEccCCeEee----e-eccCcceeeEEeccC---CCeEEEEcCCceEEEEeCCCCCceee-eeeccc
Q 021319          122 HIAVGNRDDELTILDVRKFKPIH----R-RKFGYEVNEIAWNMT---GEMFFLTTGNGTVEVLTYPSLRPLDT-VVAHTA  192 (314)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~~~~----~-~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~  192 (314)
                      +|++++.++.+.+|++...+...    . ..+...+.+++|+|+   +..+++++.++.+++|++...+.+.. +.+|..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            99999999999999998765432    2 224567899999999   89999999999999999988877766 558999


Q ss_pred             ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-------------------------cccCeEEEEEccCCcE
Q 021319          193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-------------------------LEWPVRTISFSHTGDY  247 (314)
Q Consensus       193 ~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-------------------------~~~~v~~~~~sp~~~~  247 (314)
                      .|++++|+ ++++|++++.|+.|++||+.+++++..+..                         ....+.+++|+|++++
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  321 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF  321 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence            99999999 999999999999999999999988877753                         2356899999999999


Q ss_pred             EEEec-CCceEEEEEC--CCC---CeEEEEeccCccceeEEcCCCCeeEEEe
Q 021319          248 IASAS-EDLFIDISNV--HTG---RTVHQIPCRAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       248 l~s~s-~d~~v~v~~~--~~~---~~~~~~~~~~~i~~v~~~~~~~~la~~~  293 (314)
                      |++++ .|+.|++|++  .++   +.+..+.....|.+++|+|++ ++++.+
T Consensus       322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~~  372 (450)
T 2vdu_B          322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE-FQVTLD  372 (450)
T ss_dssp             EEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE-EEEEEC
T ss_pred             EEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc-EEEEEe
Confidence            99999 8999999999  555   555556656889999999954 444443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=253.07  Aligned_cols=247  Identities=17%  Similarity=0.300  Sum_probs=207.1

Q ss_pred             ecccccEEEEEECCC---CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEE------cCCCCCEEEEEeC
Q 021319           17 TGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW------DPKHADLIATASG   87 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~---g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~~~~~~l~s~~~   87 (314)
                      .+|...|++++|+|+   +++|++|+.|+.|++|++....   .....+.+|...|.++.|      +|+ +++|++++.
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~  137 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE---MPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSR  137 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS---SCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEET
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC---ccEEEEEecccceEEEeeccccccCCC-ccEEEEEeC
Confidence            479999999999999   6999999999999999997643   123457799999999966      455 568999999


Q ss_pred             CCcEEEEeCCCCc-eeeeEEe-cC----ceEEEE----EccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEe
Q 021319           88 DKTVRLWDARSGK-CSQQAEL-SG----ENINIT----YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (314)
Q Consensus        88 D~~v~iwd~~~~~-~~~~~~~-~~----~~~~~~----~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  157 (314)
                      |+.|++||++++. ....... ..    ...++.    |+|+++++++++.|+.+.+||+++.+......+...+.++.|
T Consensus       138 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~  217 (357)
T 3i2n_A          138 DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEF  217 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEc
Confidence            9999999999876 4444322 11    445566    779999999999999999999999988777777788999999


Q ss_pred             cc---CCCeEEEEcCCceEEEEeCCCCCceeeee-----ecccceEEEEECCCCC-EEEEeeCCCeEEEeeCCCc-----
Q 021319          158 NM---TGEMFFLTTGNGTVEVLTYPSLRPLDTVV-----AHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEM-----  223 (314)
Q Consensus       158 ~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~-~l~t~~~dg~i~vwd~~~~-----  223 (314)
                      +|   ++..+++++.+|.+++|+....++...+.     +|...+++++|+|+++ ++++++.||.|++||++..     
T Consensus       218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  297 (357)
T 3i2n_A          218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK  297 (357)
T ss_dssp             SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred             CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence            99   89999999999999999987666555544     8999999999999998 8999999999999998742     


Q ss_pred             --------------EEEEEeeecccCeEEEEEccCCcEEE-EecCCceEEEEECCCCCe
Q 021319          224 --------------LCVRTFTKLEWPVRTISFSHTGDYIA-SASEDLFIDISNVHTGRT  267 (314)
Q Consensus       224 --------------~~~~~~~~~~~~v~~~~~sp~~~~l~-s~s~d~~v~v~~~~~~~~  267 (314)
                                    .++..+..|..+|.+++|+|++++|+ +++.|+.|++|++.+...
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence                          46777888999999999999999998 899999999999987553

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-36  Score=264.21  Aligned_cols=267  Identities=15%  Similarity=0.252  Sum_probs=214.6

Q ss_pred             EECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEe-ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC---Cc--
Q 021319           27 AWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS---GK--  100 (314)
Q Consensus        27 ~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~---~~--  100 (314)
                      .|+|+++.+++++      .|+...    . ....+ .+|.+.|.+++|+|.++.+|++|+.|++|++||+.+   +.  
T Consensus        34 ~f~~~~~~~~~~~------~w~~~g----~-~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  102 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLRG----K-LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY  102 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCCC----C-EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC
T ss_pred             hcCCccccccccc------cccccc----e-EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc
Confidence            4677888777766      386432    2 23345 789999999999993357999999999999999866   33  


Q ss_pred             -eeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEcc---CCeEee--------eec-----cCcceeeEE--eccCC
Q 021319          101 -CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR---KFKPIH--------RRK-----FGYEVNEIA--WNMTG  161 (314)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~--------~~~-----~~~~~~~~~--~~~~~  161 (314)
                       +.........+.+++|+|+++.|++++.|+.|++||+.   ..+...        ...     ....+.++.  +++++
T Consensus       103 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  182 (437)
T 3gre_A          103 SSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK  182 (437)
T ss_dssp             SCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred             ceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence             23333456678899999999999999999999999985   332221        111     122334444  45678


Q ss_pred             CeEEEEcCCceEEEEeCCCCCceeeeee--cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-ecccCeEE
Q 021319          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRT  238 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~  238 (314)
                      ..+++++.++.+++|+....+.+..+..  |...|++++|+|++++|++|+.||.|++||++.++++..+. .+..+|.+
T Consensus       183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  262 (437)
T 3gre_A          183 SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITH  262 (437)
T ss_dssp             EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEE
Confidence            9999999999999999999888888887  88999999999999999999999999999999999988876 67778999


Q ss_pred             EEEc----cCCcEEEEecCCceEEEEECCCCCeEEEEe---------------------------ccCccceeEEcCCCC
Q 021319          239 ISFS----HTGDYIASASEDLFIDISNVHTGRTVHQIP---------------------------CRAAMNSVEWNPKYN  287 (314)
Q Consensus       239 ~~~s----p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~---------------------------~~~~i~~v~~~~~~~  287 (314)
                      ++|+    |++.+|++|+.|+.|++||+.+++.+..+.                           +...|++++|+ +++
T Consensus       263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence            9555    568899999999999999999998887765                           33458899999 678


Q ss_pred             eeEEEecCCcccccccceEEeccccC
Q 021319          288 LLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       288 ~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +|++++.|        |.++||++++
T Consensus       342 ~l~s~~~d--------~~i~~wd~~~  359 (437)
T 3gre_A          342 ILLTDEAT--------SSIVMFSLNE  359 (437)
T ss_dssp             EEEEEGGG--------TEEEEEETTC
T ss_pred             EEEecCCC--------CeEEEEECCC
Confidence            99999977        6889999853

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.5e-35  Score=275.76  Aligned_cols=284  Identities=19%  Similarity=0.260  Sum_probs=234.6

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+.+.+|.+.|++++|+|++++|++|+.|+.|++|++.+..    ....+.+|...|.+++|+|++ .+|++++.|++|+
T Consensus        48 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~  122 (814)
T 3mkq_A           48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE----KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVK  122 (814)
T ss_dssp             EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEE
T ss_pred             EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----EEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEE
Confidence            45678999999999999999999999999999999987532    334678899999999999985 6899999999999


Q ss_pred             EEeCCCC-ceeeeEE-ecCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEecc--CCCeEE
Q 021319           93 LWDARSG-KCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNM--TGEMFF  165 (314)
Q Consensus        93 iwd~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~  165 (314)
                      +||+.++ ....... ....+.+++|+| ++..+++++.|+.|.+||++..++......  ...+..+.|+|  ++..++
T Consensus       123 vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  202 (814)
T 3mkq_A          123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI  202 (814)
T ss_dssp             EEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred             EEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence            9999877 4444443 345567899999 889999999999999999987766554432  36788999999  899999


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCC
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG  245 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~  245 (314)
                      +++.+|.+.+|+....+.+..+.+|...+.+++|+|+++++++++.||.|++||+.++..+..+..+..++.+++|+|++
T Consensus       203 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  282 (814)
T 3mkq_A          203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG  282 (814)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTC
T ss_pred             EEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCC
Confidence            99999999999998888888888999999999999999999999999999999999999999998888899999999999


Q ss_pred             c--EEEEecCCceEEEEECCCCCeEEEEe--------------------------------------------ccCccce
Q 021319          246 D--YIASASEDLFIDISNVHTGRTVHQIP--------------------------------------------CRAAMNS  279 (314)
Q Consensus       246 ~--~l~s~s~d~~v~v~~~~~~~~~~~~~--------------------------------------------~~~~i~~  279 (314)
                      .  ++++++ |+.+.+|+...+.....+.                                            +...+.+
T Consensus       283 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (814)
T 3mkq_A          283 RKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQS  361 (814)
T ss_dssp             GGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSE
T ss_pred             CceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCce
Confidence            7  455555 5557778765432221111                                            1224789


Q ss_pred             eEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          280 VEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       280 v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      ++|+|+++++++++ |        |.+.||++
T Consensus       362 ~~~spdg~~la~~~-~--------~~~~i~~~  384 (814)
T 3mkq_A          362 LAHSPNGRFVTVVG-D--------GEYVIYTA  384 (814)
T ss_dssp             EEECTTSSEEEEEE-T--------TEEEEEET
T ss_pred             eEECCCCCEEEEec-C--------CEEEEEEC
Confidence            99999999999888 4        35566654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-34  Score=246.21  Aligned_cols=256  Identities=19%  Similarity=0.296  Sum_probs=221.4

Q ss_pred             ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEE
Q 021319           56 KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTI  134 (314)
Q Consensus        56 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i  134 (314)
                      ......+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++....+. ....+.+++|+|++++|++++.|+.|.+
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             ccccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            3455678999999999999997 4699999999999999999998877665 3456678999999999999999999999


Q ss_pred             EEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC-----ceEEEEeCCCCC-----------ceeeeeeccc--ceEE
Q 021319          135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-----GTVEVLTYPSLR-----------PLDTVVAHTA--GCYC  196 (314)
Q Consensus       135 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~-----------~~~~~~~~~~--~i~~  196 (314)
                      ||+++.+.+........+.++.|+|++..++++..+     +.+.+|+.....           +...+..|..  .+.+
T Consensus       101 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          101 WDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             EECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            999999888888888899999999999999999998     999999975433           3334445555  8999


Q ss_pred             EEECCCCCEEEEeeCCCeEEEeeCCC-cEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccC
Q 021319          197 IAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA  275 (314)
Q Consensus       197 i~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~  275 (314)
                      ++|+|++++|++++.||.|++||+.+ ...+..+..|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+.+..
T Consensus       181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  260 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC  260 (369)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC
Confidence            99999999999999999999999998 78888888899999999999999999999999999999999999999988888


Q ss_pred             ccceeEEcCCCCeeEEEecCCcccccc------cceEEecccc
Q 021319          276 AMNSVEWNPKYNLLAYAGDDKNKYQAD------EGVFRIYGFE  312 (314)
Q Consensus       276 ~i~~v~~~~~~~~la~~~~d~~~~~~~------~~~~~~~~~~  312 (314)
                      .+.+++|+|++.++++++.++....+.      ...+++|+++
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  303 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI  303 (369)
T ss_dssp             CEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred             CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence            999999999999999999876432211      1168888874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.7e-36  Score=256.39  Aligned_cols=248  Identities=13%  Similarity=0.180  Sum_probs=194.3

Q ss_pred             eeeecccccEEEEEECCCCCEEEEe-----------eCCCcEEEeecCCCCCCceeeE------EeecCCCCEEEEEEcC
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASG-----------SVDQTARVWHIEPHGHGKVKDI------ELRGHADSVDQLCWDP   76 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~-----------~~D~~v~iw~~~~~~~~~~~~~------~~~~h~~~v~~l~~~~   76 (314)
                      ..+.+|...|.+++++  ++.+++|           +.|+.+|+|+++..... ....      ....+...+..++|+|
T Consensus        67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~fSp  143 (365)
T 4h5i_A           67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQ-LEFLTSVDFDASTNADDYTKLVYISR  143 (365)
T ss_dssp             EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTE-EEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred             EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCce-EEEeeeeceeecCCcccCEEEEEEcC
Confidence            4567888889888764  4555554           56888999998654321 1111      1223455688999999


Q ss_pred             CCCCE-EEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee---ccCcce
Q 021319           77 KHADL-IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---KFGYEV  152 (314)
Q Consensus        77 ~~~~~-l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~  152 (314)
                      ++..+ +++++.|++|+|||+.++++.........+..++|+|+|+++++++. +.+.+|+..+.+.+...   .+...+
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSL  222 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred             CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCE
Confidence            86533 24556799999999999998888877778889999999999999885 45667776665544332   245678


Q ss_pred             eeEEeccCCCeEEEEcCCc----eEEEEeCCCCCc----eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319          153 NEIAWNMTGEMFFLTTGNG----TVEVLTYPSLRP----LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~  224 (314)
                      ..++|+|++..+++++.++    .+..|+......    ...+.+|...|++++|+|+|++||+|+.|++|++||+.+++
T Consensus       223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~  302 (365)
T 4h5i_A          223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS  302 (365)
T ss_dssp             EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred             EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence            9999999999999987766    567777654332    33456788899999999999999999999999999999999


Q ss_pred             EEEEe-eecccCeEEEEEccCCcEEEEecCCceEEEEECCCC
Q 021319          225 CVRTF-TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG  265 (314)
Q Consensus       225 ~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~  265 (314)
                      +++++ .+|..+|.+++|||||++|||||.|+.|+||++...
T Consensus       303 ~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          303 MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99875 679999999999999999999999999999998653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-35  Score=278.94  Aligned_cols=250  Identities=22%  Similarity=0.337  Sum_probs=200.3

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D~~v~   92 (314)
                      ..+.||.+.|++++|+|++++|++|+.||+|+||++....  ......+.+|.++|.+++|+|.. +++|++|+.||+|+
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE--EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC--CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            5678999999999999999999999999999999986421  23344678999999999998762 57999999999999


Q ss_pred             EEeCCCCce--eeeEE-ecCceEEEEEccC--CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319           93 LWDARSGKC--SQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        93 iwd~~~~~~--~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      +||+.+++.  ..... ....+.+++|+|+  ++.+++++.|+.|++||++.....                        
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~------------------------  136 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT------------------------  136 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC------------------------
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc------------------------
Confidence            999998863  22222 3455678899998  899999999999999998764211                        


Q ss_pred             cCCceEEEEeCCCCCceeeeeecccceEEEEECC-------------CCCEEEEeeCCCeEEEeeCCCc----EEEEEee
Q 021319          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP-------------MGRYFAVGSADSLVSLWDISEM----LCVRTFT  230 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-------------~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~  230 (314)
                                     ....+.+|...+.+++|+|             +++++++|+.||.|++||+++.    .+...+.
T Consensus       137 ---------------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~  201 (753)
T 3jro_A          137 ---------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE  201 (753)
T ss_dssp             ---------------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred             ---------------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec
Confidence                           1112345777888888888             5899999999999999999765    5667788


Q ss_pred             ecccCeEEEEEccC---CcEEEEecCCceEEEEECCCCCeE------EEEeccCccceeEEcCCCCeeEEEecCCccccc
Q 021319          231 KLEWPVRTISFSHT---GDYIASASEDLFIDISNVHTGRTV------HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA  301 (314)
Q Consensus       231 ~~~~~v~~~~~sp~---~~~l~s~s~d~~v~v~~~~~~~~~------~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~  301 (314)
                      +|..+|.+++|+|+   +++|++++.|+.|++||+.++...      ....+...|++++|+|++.+|++++.|      
T Consensus       202 ~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D------  275 (753)
T 3jro_A          202 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------  275 (753)
T ss_dssp             CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS------
T ss_pred             CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC------
Confidence            89999999999999   999999999999999999886421      112246689999999999999999977      


Q ss_pred             ccceEEecccc
Q 021319          302 DEGVFRIYGFE  312 (314)
Q Consensus       302 ~~~~~~~~~~~  312 (314)
                        |.++||+++
T Consensus       276 --g~I~vwd~~  284 (753)
T 3jro_A          276 --NKVTLWKEN  284 (753)
T ss_dssp             --SCEECCBCC
T ss_pred             --CEEEEEecC
Confidence              578888875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4e-34  Score=249.40  Aligned_cols=246  Identities=20%  Similarity=0.291  Sum_probs=203.1

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      .|...|++++|+|++++|++|+.||.|++|+++...    ....+.+|...|.+++|++   +++++++.|+.|++||++
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT----KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe----EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecc
Confidence            388999999999999999999999999999987532    3345679999999999953   589999999999999998


Q ss_pred             C-CceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEc---CCc
Q 021319           98 S-GKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTT---GNG  171 (314)
Q Consensus        98 ~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~g  171 (314)
                      . +....... ....+.+++|+|++++|++++.|+.|++||+++.+++... .+...+.+++|+|++..+++.+   .++
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~  284 (401)
T 4aez_A          205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK  284 (401)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred             cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence            4 44444433 3456678999999999999999999999999988877665 3567799999999876555543   599


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEE--eeCCCeEEEeeCCCcEEE--EEeeecccCeEEEEEccCCcE
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCV--RTFTKLEWPVRTISFSHTGDY  247 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t--~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~sp~~~~  247 (314)
                      .+++|+....+++..+. +...+.+++|+|+++++++  |+.||.|++||+.++...  ..+.+|...|.+++|+|++++
T Consensus       285 ~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~  363 (401)
T 4aez_A          285 QIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI  363 (401)
T ss_dssp             EEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSE
T ss_pred             EEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCE
Confidence            99999998888776664 6678999999999999998  558999999999886544  346688899999999999999


Q ss_pred             EEEecCCceEEEEECCCCCeEEEE
Q 021319          248 IASASEDLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~~~~~~~~  271 (314)
                      |++++.|+.|++|++.+++.+...
T Consensus       364 l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          364 LSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEECTTSEEEEEECCC-------
T ss_pred             EEEEeCCCcEEEEECCCCcccccc
Confidence            999999999999999998876553

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.8e-34  Score=268.49  Aligned_cols=245  Identities=19%  Similarity=0.280  Sum_probs=210.4

Q ss_pred             EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-----eeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEE
Q 021319           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-----CSQQAE-LSGENINITYKPDGTHIAVGNRDDELT  133 (314)
Q Consensus        60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~  133 (314)
                      ..+.+|.+.|.+++|+|++.++|+||+.|++|++||+.+..     ...... +...+.+++|+|++++|++++.|+.|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            35789999999999999877899999999999999987643     222332 334567899999999999999999999


Q ss_pred             EEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceee---eeecccceEEEEECCCC--CEEE
Q 021319          134 ILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT---VVAHTAGCYCIAIDPMG--RYFA  207 (314)
Q Consensus       134 i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~i~~i~~~~~~--~~l~  207 (314)
                      +||+.+.+.+... .+...+.+++|+|++..+++++.|+.+++|+.........   ..+|...+.+++|+|++  ..++
T Consensus       456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence            9999998877664 4567899999999999999999999999999754332221   23688889999999987  5899


Q ss_pred             EeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCC
Q 021319          208 VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN  287 (314)
Q Consensus       208 t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~  287 (314)
                      +++.|+.|++||+++.++...+.+|...|.+++|+|++++|+||+.|+.|++||+.+++.+..+.....|++++|+|++.
T Consensus       536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~  615 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY  615 (694)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSS
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999888887778899999999998


Q ss_pred             eeEEEecCCcccccccceEEeccccC
Q 021319          288 LLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       288 ~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +|++++++         .++||+++.
T Consensus       616 ~l~~~~~~---------~i~iwd~~~  632 (694)
T 3dm0_A          616 WLCAATEH---------GIKIWDLES  632 (694)
T ss_dssp             EEEEEETT---------EEEEEETTT
T ss_pred             EEEEEcCC---------CEEEEECCC
Confidence            88776533         488998853

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-35  Score=263.95  Aligned_cols=248  Identities=9%  Similarity=0.097  Sum_probs=196.0

Q ss_pred             eeecccccEEEEEECCC------CCEEEEeeCCCcEEEeecCCCCCC-------ceeeEEeecCCCCEEEEEEcCCCCCE
Q 021319           15 EYTGHKKKVHSVAWNCT------GTKLASGSVDQTARVWHIEPHGHG-------KVKDIELRGHADSVDQLCWDPKHADL   81 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~------g~~l~s~~~D~~v~iw~~~~~~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~   81 (314)
                      .+.+|.+.|.+|+|+|+      +.+||||+.||+|+|||+......       ......+.+|...|.+++|++.  ..
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~  279 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TT  279 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--Ce
Confidence            35678899999999997      579999999999999999754211       0112357789999999999974  48


Q ss_pred             EEEEeCCCcEEEEeCCCCcee-eeEEe-cCceEEE--EEccCC-CEEEEEeCCCcEEEEEccCCeEeeeecc---Cccee
Q 021319           82 IATASGDKTVRLWDARSGKCS-QQAEL-SGENINI--TYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKF---GYEVN  153 (314)
Q Consensus        82 l~s~~~D~~v~iwd~~~~~~~-~~~~~-~~~~~~~--~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~  153 (314)
                      |++|+.||+|++||++++... ..... ...+.++  .|+|++ .+|++++.|+++++||+++.+.......   ...+.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            999999999999999876432 22333 3455666  567887 8999999999999999987654433221   12467


Q ss_pred             eEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc----------
Q 021319          154 EIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----------  223 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~----------  223 (314)
                      +++|+|++..+++++.++.+++|+......+..+.+|...|++++|+|++++|++|+.||+|++||+...          
T Consensus       360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~  439 (524)
T 2j04_B          360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSA  439 (524)
T ss_dssp             CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC-----
T ss_pred             ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcc
Confidence            8999999999999999999999999888877788899999999999999999999999999999985321          


Q ss_pred             ----------------------------------EEEEEeeecccCeEEEEEccCCc---EEEEecCCceEEEEECCC
Q 021319          224 ----------------------------------LCVRTFTKLEWPVRTISFSHTGD---YIASASEDLFIDISNVHT  264 (314)
Q Consensus       224 ----------------------------------~~~~~~~~~~~~v~~~~~sp~~~---~l~s~s~d~~v~v~~~~~  264 (314)
                                                        .++.++.+|..+|.+++|+|++.   ++|+|+.||.|+||++.-
T Consensus       440 ~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          440 TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             -CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence                                              11122334666889999999964   999999999999999753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-34  Score=241.04  Aligned_cols=251  Identities=17%  Similarity=0.204  Sum_probs=210.1

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ...+.+|...|.+++|+|++++|++|+.|+.|++|++...... .....+.+|...|.+++|+   ++++++++.|+.|+
T Consensus        52 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~  127 (313)
T 3odt_A           52 GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE-DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAK  127 (313)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS-CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEE
T ss_pred             EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC-CcccchhhcccCEEEEEec---CCEEEEEeCCCCEE
Confidence            3456789999999999999999999999999999998754322 2234578899999999994   46899999999999


Q ss_pred             EEeCCCCceeeeEE-ecCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319           93 LWDARSGKCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        93 iwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      +||  .+....... .......+.+.| +++.+++++.|+.+.+||...........+...+.+++|++++. +++++.+
T Consensus       128 ~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d  204 (313)
T 3odt_A          128 VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND  204 (313)
T ss_dssp             EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred             EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence            999  445444443 345566788887 99999999999999999954433333333667899999999998 8899999


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      +.+++|+....+++..+..|...+++++|+|++ .+++++.||.|++||+.+++.+..+..+..++.+++|+|+++ +++
T Consensus       205 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~  282 (313)
T 3odt_A          205 GLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIV  282 (313)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEE
T ss_pred             CeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEE
Confidence            999999999988888899999999999999999 588999999999999999999999999999999999999999 567


Q ss_pred             ecCCceEEEEECCCCCeEEEEe
Q 021319          251 ASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      ++.|+.|++|++.+++.+....
T Consensus       283 ~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          283 GSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             EETTSCEEEEESCGGGCCC---
T ss_pred             EeCCCcEEEEeCCCCceeehhh
Confidence            9999999999999887665543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=261.81  Aligned_cols=258  Identities=7%  Similarity=0.030  Sum_probs=206.2

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      ...|.+|+|||||+++||++.|++|+  |....       ..+.+|...|..++|+|++        .++.+++|+....
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-------~~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~~~~   77 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-------KDINCNSKNLFHVKEFPLE--------FENKLDFELAQQN   77 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCC-------SCCSSBGGGTEEEEEECCC--------CCCTTTTSCCCSS
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--ccccc-------ceecCCCccEEEEEECCCC--------CcceEEEEeCCCc
Confidence            57899999999999999999999999  64321       1346999999999999975        5566666654322


Q ss_pred             ceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC-----cceeeEEeccCCCeEEEEcCCceEE
Q 021319          100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-----YEVNEIAWNMTGEMFFLTTGNGTVE  174 (314)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~  174 (314)
                      . .........+..++|+|+|+.|++++.|+.+.+||...  .+....+.     ..+.+++|+|+|+.+++++.+|+++
T Consensus        78 ~-~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           78 G-LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             C-SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             e-EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            2 22212256678899999999999999999999999544  33333322     2589999999999999999999999


Q ss_pred             EEeCCCCCc-------eeee----eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE---EEEee-ecccCeEEE
Q 021319          175 VLTYPSLRP-------LDTV----VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---VRTFT-KLEWPVRTI  239 (314)
Q Consensus       175 ~~~~~~~~~-------~~~~----~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~-~~~~~v~~~  239 (314)
                      +|+......       +.++    .+|...|.+++|+|+|  +++++.|++|++||+.....   .+++. .|...|.++
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv  232 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL  232 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence            999877542       4554    5677899999999999  78889999999999987663   34563 677889999


Q ss_pred             EEccCCcEEEEecCCceEEEEECCCCCe-EEEEeccCccceeEE--cCCCCeeEEEecCCcccccccceEEeccc
Q 021319          240 SFSHTGDYIASASEDLFIDISNVHTGRT-VHQIPCRAAMNSVEW--NPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       240 ~~sp~~~~l~s~s~d~~v~v~~~~~~~~-~~~~~~~~~i~~v~~--~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +|+  |++||+++ |+.|++||..+++. .....|...+++|+|  +|++..|+++++|        |+ |+|-+
T Consensus       233 aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed--------G~-klw~~  295 (588)
T 2j04_A          233 KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT--------SY-KVLLE  295 (588)
T ss_dssp             EEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC--------EE-EEEES
T ss_pred             EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC--------CC-EEEee
Confidence            999  69999998 69999999998777 444467789999999  9999999999977        56 66655

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-33  Score=247.47  Aligned_cols=238  Identities=15%  Similarity=0.222  Sum_probs=207.2

Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      |.+.|++++|+|++++|++|+.|+.|++|+...     .....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG-----ALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVIS  180 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETTS-----CEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTT
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCC
Confidence            788999999999999999999999999999431     2334677899999999999974 6899999999999999987


Q ss_pred             CceeeeEE---------------------------------------------------------ecCceEEEEEccCCC
Q 021319           99 GKCSQQAE---------------------------------------------------------LSGENINITYKPDGT  121 (314)
Q Consensus        99 ~~~~~~~~---------------------------------------------------------~~~~~~~~~~~~~~~  121 (314)
                      ++......                                                         ....+..++|+|+++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  260 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK  260 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence            76543221                                                         122345688999999


Q ss_pred             EEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEEC
Q 021319          122 HIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID  200 (314)
Q Consensus       122 ~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  200 (314)
                      +|++++.|+.+.+||++..+.+.... +...+.++.|+|++ .+++++.++.+++|+....+.+..+..|...+.+++|+
T Consensus       261 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence            99999999999999999877666654 56789999999999 99999999999999999888888888899999999999


Q ss_pred             CCCCEEEEeeCCCeEEEeeCCCcE--------------------EEEEeeeccc--CeEEEEEccCCcEEEEecCCceEE
Q 021319          201 PMGRYFAVGSADSLVSLWDISEML--------------------CVRTFTKLEW--PVRTISFSHTGDYIASASEDLFID  258 (314)
Q Consensus       201 ~~~~~l~t~~~dg~i~vwd~~~~~--------------------~~~~~~~~~~--~v~~~~~sp~~~~l~s~s~d~~v~  258 (314)
                      |++++|++++.||.|++||+.+..                    .+..+..+..  +|.+++|+|++++|++++.|+.|+
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  419 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS  419 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence            999999999999999999998877                    7888888866  999999999999999999999999


Q ss_pred             EEECC
Q 021319          259 ISNVH  263 (314)
Q Consensus       259 v~~~~  263 (314)
                      +|++.
T Consensus       420 iw~~~  424 (425)
T 1r5m_A          420 VVAIP  424 (425)
T ss_dssp             EEECC
T ss_pred             EEeec
Confidence            99974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.9e-34  Score=247.78  Aligned_cols=240  Identities=14%  Similarity=0.134  Sum_probs=197.3

Q ss_pred             ecccccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceee-EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           17 TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        17 ~gH~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      .+|.+.|.+++|+| ++++|++++.|+.|++||+...   .... ....+|...|.+++|+|++ .+|++++.|+.|++|
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~  190 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS---VIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLL  190 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC---EEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC---ceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEE
Confidence            47999999999999 6899999999999999999741   1111 1223455889999999975 699999999999999


Q ss_pred             eCCCCceeeeEE-ecCceEEEEEccCCC-EEEEEeCCCcEEEEEccC----CeEeeeeccCcceeeEEecc-CCCeEEEE
Q 021319           95 DARSGKCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRK----FKPIHRRKFGYEVNEIAWNM-TGEMFFLT  167 (314)
Q Consensus        95 d~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  167 (314)
                      |++ ++...... ....+.+++|+|+++ ++++++.|+.|++||+++    ...+....+...+.+++|+| ++..++++
T Consensus       191 d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          191 GLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             ETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE
T ss_pred             ECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE
Confidence            995 55554444 345677899999999 999999999999999987    55566666778899999999 99999999


Q ss_pred             cCCceEEEEeCCCCCceeeeeecc-----------------cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319          168 TGNGTVEVLTYPSLRPLDTVVAHT-----------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~~~~~-----------------~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~  230 (314)
                      +.++.+++|++...+....+..|.                 ..+..++++|++++  +++.|+.|++||+.+++++..+.
T Consensus       270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~  347 (383)
T 3ei3_B          270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR  347 (383)
T ss_dssp             ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred             cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence            999999999998777666665543                 23445667777766  77899999999999999998887


Q ss_pred             e--cccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          231 K--LEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       231 ~--~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      .  +...+..++|+|++++|++|+ |+.|++||+.+
T Consensus       348 ~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          348 DPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             BTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            6  456678889999999999997 99999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.2e-33  Score=246.70  Aligned_cols=283  Identities=12%  Similarity=0.141  Sum_probs=232.5

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeE-EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      ..+.+++|+|++.++++++.|+.|++||+++......... .+.+|...|.+++|+|+ +.++++++.|+.|++||+.++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~~~~  201 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDLKTL  201 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEETTTC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEEECCCc
Confidence            4466999999888888899999999999875321110000 34578999999999876 468999999999999999998


Q ss_pred             ceeeeEEe-cCceEEEEEccCCCEEEEEe-CCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEc--------C
Q 021319          100 KCSQQAEL-SGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT--------G  169 (314)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  169 (314)
                      +....... ......++|+|+++.+++++ .++.|.+||+++.+.+........+..++|+|+++.++++.        .
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccC
Confidence            87776654 34567899999999886554 78999999999988887777777789999999999888887        5


Q ss_pred             CceEEEEeCCCCCceeeeeecccceEEEEECCCCCE-EEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEE
Q 021319          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI  248 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  248 (314)
                      ++.+++|+....+.+..+ .|...+.+++|+|+++. +++++.++.|++||+.+++.+..+. +...+.+++|+|++++|
T Consensus       282 dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l  359 (433)
T 3bws_A          282 GGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYL  359 (433)
T ss_dssp             CEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEE
T ss_pred             CCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEE
Confidence            889999999876655443 56668899999999975 5677899999999999998887775 56679999999999999


Q ss_pred             EEecC---------------CceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          249 ASASE---------------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       249 ~s~s~---------------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ++++.               ||.|++||..+++.+..+.....+.+++|+|++++|++++.+       +|.++||+++.
T Consensus       360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------d~~i~v~~~~~  432 (433)
T 3bws_A          360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFL-------DHQIRVYRRDG  432 (433)
T ss_dssp             EEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETT-------TTEEEEEEETT
T ss_pred             EEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECC-------CCeEEEEEecC
Confidence            88876               579999999999998888877789999999999999888752       36899999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-34  Score=246.76  Aligned_cols=243  Identities=21%  Similarity=0.313  Sum_probs=202.5

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC--ceeeeEE-ecCceEEEEEccC--CCEEEEEeCCCcEEEE
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG--KCSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTIL  135 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~--~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~  135 (314)
                      .+.+|.+.|.+++|+|++ ++|++|+.|+.|++||+..+  +....+. ....+.+++|+++  +++|++++.|+.|++|
T Consensus         6 ~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CEEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            468999999999999974 69999999999999999743  3333333 3455678999877  9999999999999999


Q ss_pred             EccCCe--Eeeee-ccCcceeeEEeccC--CCeEEEEcCCceEEEEeCCCCC--ceeeeeecccceEEEEECC-------
Q 021319          136 DVRKFK--PIHRR-KFGYEVNEIAWNMT--GEMFFLTTGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDP-------  201 (314)
Q Consensus       136 d~~~~~--~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~-------  201 (314)
                      |+++.+  .+... .+...+.+++|+|+  +..+++++.++.+++|++....  ....+..|...+++++|+|       
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  164 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  164 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence            999876  33333 35678999999999  9999999999999999997663  3345668899999999999       


Q ss_pred             ------CCCEEEEeeCCCeEEEeeCCCc----EEEEEeeecccCeEEEEEccC---CcEEEEecCCceEEEEECCCCCeE
Q 021319          202 ------MGRYFAVGSADSLVSLWDISEM----LCVRTFTKLEWPVRTISFSHT---GDYIASASEDLFIDISNVHTGRTV  268 (314)
Q Consensus       202 ------~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~sp~---~~~l~s~s~d~~v~v~~~~~~~~~  268 (314)
                            +++++++++.||.|++||++..    .++..+..|..+|.+++|+|+   +++|++++.|+.|++||+.++...
T Consensus       165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~  244 (379)
T 3jrp_A          165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  244 (379)
T ss_dssp             -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence                  6999999999999999998754    355677789999999999999   899999999999999999886422


Q ss_pred             ---EEEe---ccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          269 ---HQIP---CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       269 ---~~~~---~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                         ....   +...|++++|+|++.+|++++.|        |.++||+++
T Consensus       245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--------g~i~iw~~~  286 (379)
T 3jrp_A          245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD--------NKVTLWKEN  286 (379)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEESS--------SSEEEEEEE
T ss_pred             ceeeeeccccCCCcEEEEEEcCCCCEEEEecCC--------CcEEEEeCC
Confidence               2211   45679999999999999999977        567888874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-35  Score=249.02  Aligned_cols=259  Identities=10%  Similarity=0.065  Sum_probs=202.2

Q ss_pred             EECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC---------
Q 021319           27 AWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR---------   97 (314)
Q Consensus        27 ~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~---------   97 (314)
                      .+.+++++|+||+.||+|++||++...  ...  .+.  ...|.++.++|.    +++++.|++|++|+..         
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~--~~~--~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~  112 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSK--TIT--TIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSK  112 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSS--CEE--EEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCc--EEE--EEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecC
Confidence            455788999999999999999997643  222  222  456777788875    8899999999999765         


Q ss_pred             CCceeeeEEe--cCceEEEEEcc--CCCEEEEEeCCCcEEEEEccCCeEeeee--ccCcceeeEEeccCCCeEEEEcCCc
Q 021319           98 SGKCSQQAEL--SGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTGEMFFLTTGNG  171 (314)
Q Consensus        98 ~~~~~~~~~~--~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g  171 (314)
                      +++.......  ...+.+++++|  +++++++++.|+.+++||+++.+.....  .....+.+++|+|++..+++++.+|
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg  192 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG  192 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence            3443333332  25578899999  9999999999999999999988775543  3344689999999999999999999


Q ss_pred             eEEEEeCCCCCce-eeeee-cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee---cccCeE--EEEEccC
Q 021319          172 TVEVLTYPSLRPL-DTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---LEWPVR--TISFSHT  244 (314)
Q Consensus       172 ~~~~~~~~~~~~~-~~~~~-~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~--~~~~sp~  244 (314)
                      .+++|+....+.+ ..+.. |...|++++|+|++.+|++++ |+.|++||+++..++..+..   +..++.  +++|+|+
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            9999999888776 67777 999999999999999999999 55999999998765544433   333444  6999999


Q ss_pred             CcEEEEecC-CceEEEEECCCCCeEEEEeccCccceeEEcC---CCCeeEEEecCCccc
Q 021319          245 GDYIASASE-DLFIDISNVHTGRTVHQIPCRAAMNSVEWNP---KYNLLAYAGDDKNKY  299 (314)
Q Consensus       245 ~~~l~s~s~-d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~---~~~~la~~~~d~~~~  299 (314)
                      +++|++++. |+.+++|++.+.......   .++..++|+|   +...+++++.|+...
T Consensus       272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~  327 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIA  327 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred             CCEEEEecCCCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEEecCCceE
Confidence            999999998 999999999776554443   5688899999   888999999886544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.2e-33  Score=245.16  Aligned_cols=248  Identities=19%  Similarity=0.289  Sum_probs=203.3

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      .+.+|...|++|+|+|+|++|++|+.|++|+|||++..    .....+.+|...+.++++++   .++++|+.|+.+++|
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~----~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~  214 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHH  214 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEE
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC----cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEe
Confidence            34578889999999999999999999999999999753    23346789999999999864   589999999999999


Q ss_pred             eCCCCcee-eeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe-----eeeccCcceeeEEeccCCCeEE-E
Q 021319           95 DARSGKCS-QQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFF-L  166 (314)
Q Consensus        95 d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~  166 (314)
                      |....... .... .......+.+.|+++.+++++.|+.+.+||....+..     ....+...+..++|+|.+..++ +
T Consensus       215 d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~  294 (420)
T 4gga_A          215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT  294 (420)
T ss_dssp             ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEE
T ss_pred             eecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEE
Confidence            98765432 3333 3445667889999999999999999999998765421     2233456788999999876554 3


Q ss_pred             --EcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee--CCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319          167 --TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFS  242 (314)
Q Consensus       167 --~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  242 (314)
                        ++.|+.+++|+....+....+..| ..+.++.|+|+++.+++++  .|+.|++||+.+++++.++.+|..+|.+++|+
T Consensus       295 ~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s  373 (420)
T 4gga_A          295 GGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS  373 (420)
T ss_dssp             EECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence              346899999999888777666544 5688999999999887654  78999999999999999999999999999999


Q ss_pred             cCCcEEEEecCCceEEEEECCCCCeEEE
Q 021319          243 HTGDYIASASEDLFIDISNVHTGRTVHQ  270 (314)
Q Consensus       243 p~~~~l~s~s~d~~v~v~~~~~~~~~~~  270 (314)
                      |+|++|||||.|+.|++||+.+..+.+.
T Consensus       374 pdg~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          374 PDGATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             TTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred             CCCCEEEEEecCCeEEEEECCCCCccch
Confidence            9999999999999999999977655443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.7e-33  Score=239.22  Aligned_cols=244  Identities=17%  Similarity=0.217  Sum_probs=202.3

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc----eeeeEE-ecCceEEEEEcc--CCCEEEEEeCCCcEE
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAE-LSGENINITYKP--DGTHIAVGNRDDELT  133 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~----~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~d~~i~  133 (314)
                      .+.+|.+.|.+++|+|+ +.+|++++.|+.|++||+.++.    ....+. ....+.+++|+|  ++++|++++.|+.|+
T Consensus         6 ~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             EECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             cCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            46799999999999997 4699999999999999998763    333332 345677899999  699999999999999


Q ss_pred             EEEccCC---------eEeeee-ccCcceeeEEeccC--CCeEEEEcCCceEEEEeCCCCCceeeee-------------
Q 021319          134 ILDVRKF---------KPIHRR-KFGYEVNEIAWNMT--GEMFFLTTGNGTVEVLTYPSLRPLDTVV-------------  188 (314)
Q Consensus       134 i~d~~~~---------~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------  188 (314)
                      +||++..         +++... .+...+.+++|+|+  +..+++++.++.+++|++...+.+..+.             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999875         334333 34567999999999  9999999999999999987766544332             


Q ss_pred             ecccceEEEEECCC---CCEEEEeeCCCeEEEeeCCCcEE--EEEeeecccCeEEEEEccCC----cEEEEecCCceEEE
Q 021319          189 AHTAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTG----DYIASASEDLFIDI  259 (314)
Q Consensus       189 ~~~~~i~~i~~~~~---~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~sp~~----~~l~s~s~d~~v~v  259 (314)
                      .|...+.+++|+|+   +.++++++.++.+.+|+......  +..+..|..+|.+++|+|++    ++|++++.|+.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            57778999999997   89999999999998888876654  67778899999999999998    89999999999999


Q ss_pred             EECCCC----------------------------------------------CeEEEEe-ccCccceeEEcCCCCeeEEE
Q 021319          260 SNVHTG----------------------------------------------RTVHQIP-CRAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       260 ~~~~~~----------------------------------------------~~~~~~~-~~~~i~~v~~~~~~~~la~~  292 (314)
                      ||+.++                                              +.+..+. +...|++++|+|++++|+++
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence            999764                                              3333333 46789999999999999999


Q ss_pred             ecCCcccccccceEEeccccC
Q 021319          293 GDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       293 ~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +.|        |.++||+++.
T Consensus       325 ~~d--------g~v~iw~~~~  337 (351)
T 3f3f_A          325 GDD--------GKVRLWKATY  337 (351)
T ss_dssp             ETT--------SCEEEEEECT
T ss_pred             cCC--------CcEEEEecCc
Confidence            987        5788998853

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.3e-33  Score=248.48  Aligned_cols=283  Identities=18%  Similarity=0.317  Sum_probs=222.5

Q ss_pred             cEEEEEECCCC----------CEEEEeeC----CCcEEEeecCC-----------------------CCCCceeeEEeec
Q 021319           22 KVHSVAWNCTG----------TKLASGSV----DQTARVWHIEP-----------------------HGHGKVKDIELRG   64 (314)
Q Consensus        22 ~V~~v~~s~~g----------~~l~s~~~----D~~v~iw~~~~-----------------------~~~~~~~~~~~~~   64 (314)
                      +..+++|.|+.          .+++.|..    ...|.+.+++.                       ...+........+
T Consensus        47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  126 (430)
T 2xyi_A           47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN  126 (430)
T ss_dssp             CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred             CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence            56888888875          45777654    35677775430                       0011233345678


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC----------CceeeeEE-ecCceEEEEEccCCC-EEEEEeCCCcE
Q 021319           65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARS----------GKCSQQAE-LSGENINITYKPDGT-HIAVGNRDDEL  132 (314)
Q Consensus        65 h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~----------~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i  132 (314)
                      |.+.|.+++|+|+++.+|++++.||.|++||+.+          ......+. ....+.+++|+|++. +|++++.|+.|
T Consensus       127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  206 (430)
T 2xyi_A          127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI  206 (430)
T ss_dssp             ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred             CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence            9999999999997667999999999999999875          23333333 334556799999998 99999999999


Q ss_pred             EEEEccCCeE-------eeee-ccCcceeeEEecc-CCCeEEEEcCCceEEEEeCCCC---CceeeeeecccceEEEEEC
Q 021319          133 TILDVRKFKP-------IHRR-KFGYEVNEIAWNM-TGEMFFLTTGNGTVEVLTYPSL---RPLDTVVAHTAGCYCIAID  200 (314)
Q Consensus       133 ~i~d~~~~~~-------~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~i~~i~~~  200 (314)
                      .+||+.....       .... .+...+.+++|+| .+..+++++.++.+++|++...   +++..+..|...+++++|+
T Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  286 (430)
T 2xyi_A          207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN  286 (430)
T ss_dssp             EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC
T ss_pred             EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC
Confidence            9999987321       1112 3456799999999 6778889999999999999865   5666777899999999999


Q ss_pred             CCCC-EEEEeeCCCeEEEeeCCC-cEEEEEeeecccCeEEEEEccCCc-EEEEecCCceEEEEECCC-------------
Q 021319          201 PMGR-YFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHT-------------  264 (314)
Q Consensus       201 ~~~~-~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s~d~~v~v~~~~~-------------  264 (314)
                      |++. ++++|+.||.|++||++. ...+..+..|..+|.+++|+|+++ +|++++.|+.|++||+..             
T Consensus       287 p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  366 (430)
T 2xyi_A          287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG  366 (430)
T ss_dssp             SSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHC
T ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccC
Confidence            9987 689999999999999987 456778888999999999999995 699999999999999976             


Q ss_pred             -CCeEEEEe-ccCccceeEEcCCCC-eeEEEecCCcccccccceEEecccc
Q 021319          265 -GRTVHQIP-CRAAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       265 -~~~~~~~~-~~~~i~~v~~~~~~~-~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                       ...+..+. +...|++++|+|+++ +|++++.|        |.++||.++
T Consensus       367 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d--------g~i~iw~~~  409 (430)
T 2xyi_A          367 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSED--------NIMQVWQMA  409 (430)
T ss_dssp             CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT--------SEEEEEEEC
T ss_pred             CcceEEEcCCCCCCceEEEECCCCCCEEEEEECC--------CCEEEeEcc
Confidence             23444433 456799999999998 88999977        689999885

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.7e-34  Score=249.88  Aligned_cols=252  Identities=15%  Similarity=0.233  Sum_probs=202.0

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEE---ecCceEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE---LSGENINITYKP-DGTHIAVGNRDDELTILD  136 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d  136 (314)
                      ...+|...|++|+|+|.++++|++|+.||+|+|||+.++.......   +...+.+++|+| ++++|++++.|++|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            4567899999999999878899999999999999998776444332   345567899998 689999999999999999


Q ss_pred             ccCCeEeeeec---cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCC-EEEEeeCC
Q 021319          137 VRKFKPIHRRK---FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSAD  212 (314)
Q Consensus       137 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~t~~~d  212 (314)
                      ++.........   ....+.++.|++++..+++++.+|.+++|+... +.+..+.+|...|++++|+|++. ++++|+.|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence            98754432222   223467899999999999999999999999854 45667789999999999999876 78899999


Q ss_pred             CeEEEeeCCCcEEEEE---eeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-c------CccceeEE
Q 021319          213 SLVSLWDISEMLCVRT---FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-R------AAMNSVEW  282 (314)
Q Consensus       213 g~i~vwd~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~------~~i~~v~~  282 (314)
                      +.|++||+++......   ..+|..+|.+++|+|++++|++++.|+.|++||+.+++....+.. .      ..+..+.|
T Consensus       273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (435)
T 4e54_B          273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW  352 (435)
T ss_dssp             SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred             ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence            9999999987654332   346888999999999999999999999999999999887766532 1      13557899


Q ss_pred             cCCCCeeEEEecC-Ccccc---cccceEEeccccC
Q 021319          283 NPKYNLLAYAGDD-KNKYQ---ADEGVFRIYGFEN  313 (314)
Q Consensus       283 ~~~~~~la~~~~d-~~~~~---~~~~~~~~~~~~~  313 (314)
                      +|++.++++++.+ +....   .++++++||+.+.
T Consensus       353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~  387 (435)
T 4e54_B          353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS  387 (435)
T ss_dssp             CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred             cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence            9999998887644 33322   3456899998753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.9e-33  Score=247.32  Aligned_cols=252  Identities=19%  Similarity=0.276  Sum_probs=209.2

Q ss_pred             ceeeecccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCC------CceeeEEeecCCCCEEEEEEcCCCCCEEEEE
Q 021319           13 SREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGH------GKVKDIELRGHADSVDQLCWDPKHADLIATA   85 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~   85 (314)
                      .....+|.+.|++++|+|+ +.+|++++.||.|++|++.....      .......+.+|...|.+++|+|.+..+|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            4456789999999999998 67999999999999999975210      0123346789999999999999876699999


Q ss_pred             eCCCcEEEEeCCCCce-------eeeE-EecCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCC---eEeeee-ccCcce
Q 021319           86 SGDKTVRLWDARSGKC-------SQQA-ELSGENINITYKP-DGTHIAVGNRDDELTILDVRKF---KPIHRR-KFGYEV  152 (314)
Q Consensus        86 ~~D~~v~iwd~~~~~~-------~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~---~~~~~~-~~~~~~  152 (314)
                      +.||+|++||+..+..       .... .....+..++|+| ++..+++++.|+.|.+||++..   +++... .+...+
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987432       1112 2334567899999 7789999999999999999876   344443 456779


Q ss_pred             eeEEeccCCC-eEEEEcCCceEEEEeCCC-CCceeeeeecccceEEEEECCCCC-EEEEeeCCCeEEEeeCCC-------
Q 021319          153 NEIAWNMTGE-MFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISE-------  222 (314)
Q Consensus       153 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~-~l~t~~~dg~i~vwd~~~-------  222 (314)
                      .+++|+|.+. .+++++.+|.+++|++.. ..++..+..|...+++++|+|+++ +|++++.|+.|++||+..       
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            9999999987 578899999999999987 456778888999999999999985 699999999999999976       


Q ss_pred             -------cEEEEEeeecccCeEEEEEccCCc-EEEEecCCceEEEEECCC
Q 021319          223 -------MLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHT  264 (314)
Q Consensus       223 -------~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s~d~~v~v~~~~~  264 (314)
                             ...+..+.+|...|.+++|+|+++ +|++++.|+.|++|++..
T Consensus       361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence                   356667778888999999999999 999999999999999865

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.2e-33  Score=241.49  Aligned_cols=241  Identities=12%  Similarity=0.191  Sum_probs=205.3

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc--eeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK--CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVR  138 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (314)
                      +..|.++|.+++|+|++ ++|++++.|+.|++||+.+++  ....+. ....+.+++|+|++++|++++.|+.+.+||++
T Consensus         4 ~~~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EESCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             ecccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            34589999999999974 699999999999999998886  444443 34566789999999999999999999999998


Q ss_pred             CCeEeee---eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc---eee-eeecccceEEEEECCCCCEEEEeeC
Q 021319          139 KFKPIHR---RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP---LDT-VVAHTAGCYCIAIDPMGRYFAVGSA  211 (314)
Q Consensus       139 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~-~~~~~~~i~~i~~~~~~~~l~t~~~  211 (314)
                      +.+....   ..+...+.++.|+|+++.+++++.++.+++|++.....   ... ...|...+++++|+|++++|++++.
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            8764433   34567799999999999999999999999999876653   222 2467889999999999999999999


Q ss_pred             CCeEEEeeC------------------CCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319          212 DSLVSLWDI------------------SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       212 dg~i~vwd~------------------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~  273 (314)
                      ||.|++||+                  ..+.++..+..|..++.+++|+|++++|++++.|+.|++||+.+++.+..+..
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            999999995                  36778888888999999999999999999999999999999999998888764


Q ss_pred             -cCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          274 -RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       274 -~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                       ...|++++|+|++.+|+++ .|        |.++||+++
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~-~d--------~~i~i~~~~  273 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAG-HD--------CFPVLFTYD  273 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEE-TT--------SSCEEEEEE
T ss_pred             CCCCeEEEEEecCCCEEEEE-eC--------CeEEEEEcc
Confidence             5589999999999988876 66        456677764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.1e-33  Score=246.69  Aligned_cols=253  Identities=19%  Similarity=0.300  Sum_probs=207.1

Q ss_pred             ceeeecccccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCc---eeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC
Q 021319           13 SREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGD   88 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D   88 (314)
                      ...+.+|.+.|++++|+| ++++|++|+.|++|+||++.......   .....+.+|...|.+++|+|++.++|++++.|
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            345789999999999999 89999999999999999997643210   12346789999999999999876799999999


Q ss_pred             CcEEEEeCCCCceeeeE--E-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-c-cC-cceeeEEeccCCC
Q 021319           89 KTVRLWDARSGKCSQQA--E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-K-FG-YEVNEIAWNMTGE  162 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~-~~-~~~~~~~~~~~~~  162 (314)
                      +.|++||+++++.....  . ....+.+++|+|++++|++++.|+.|++||+++.+.+... . +. ..+..+.|++++.
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK  233 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence            99999999999877666  2 3456778999999999999999999999999998887765 2 22 2378899999999


Q ss_pred             eEEEE---cCCceEEEEeCCCCCc-eeeee-ecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEE-EEEeee--cc
Q 021319          163 MFFLT---TGNGTVEVLTYPSLRP-LDTVV-AHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLC-VRTFTK--LE  233 (314)
Q Consensus       163 ~~~~~---~~~g~~~~~~~~~~~~-~~~~~-~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~-~~~~~~--~~  233 (314)
                      .++++   ..++.+.+|+....+. +.... .|...+.+++|+|++++|+ +|+.||.|++||+.+.+. +..+..  +.
T Consensus       234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~  313 (402)
T 2aq5_A          234 ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSK  313 (402)
T ss_dssp             EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCS
T ss_pred             EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccC
Confidence            99988   7999999999977553 33332 4677899999999999986 455799999999987652 344433  45


Q ss_pred             cCeEEEEEccCCcEEEEecCCceEEEEECCCCCe
Q 021319          234 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  267 (314)
Q Consensus       234 ~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~  267 (314)
                      .++.+++|+|++.++++  .|+.+++|++.+++.
T Consensus       314 ~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          314 ESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             SCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             CcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            78999999999999864  566899999987643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.3e-32  Score=234.37  Aligned_cols=265  Identities=14%  Similarity=0.143  Sum_probs=219.9

Q ss_pred             CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceE
Q 021319           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI  112 (314)
Q Consensus        33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~  112 (314)
                      ..+++++.|+.|++||++..   . ....+.+|. .+.+++|+|++..++++++.|++|++||+.++++.........+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~---~-~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~   77 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN---K-VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ   77 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT---E-EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE
T ss_pred             EEEEEcCCCCEEEEEECCCC---e-EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc
Confidence            46888999999999998753   1 223455554 589999999865455788899999999999999888887777888


Q ss_pred             EEEEccCCCEEEEEe-CCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeE-EEEcCCceEEEEeCCCCCceeeeeec
Q 021319          113 NITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-FLTTGNGTVEVLTYPSLRPLDTVVAH  190 (314)
Q Consensus       113 ~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~  190 (314)
                      .++|+|+++.|++++ .++.|.+||+.+.+.+........+..++|+++++.+ +++..++.+.+|+....+.+..+..+
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  157 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence            999999999886554 6799999999999888777777788999999999977 67778999999999887776666554


Q ss_pred             ccceEEEEECCCCCEE-EEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEec---CCceEEEEECCCCC
Q 021319          191 TAGCYCIAIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS---EDLFIDISNVHTGR  266 (314)
Q Consensus       191 ~~~i~~i~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s---~d~~v~v~~~~~~~  266 (314)
                       ..+.+++|+|+++++ ++++.++.|++||+++++++..+. +...+.+++|+|++++|++++   .|+.|.+||..+++
T Consensus       158 -~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          158 -RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             -CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence             457999999999887 677888999999999998887765 445689999999999999888   68999999999999


Q ss_pred             eEEEEeccCccceeEEcCCCCee-EEEecCCcccccccceEEecccc
Q 021319          267 TVHQIPCRAAMNSVEWNPKYNLL-AYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       267 ~~~~~~~~~~i~~v~~~~~~~~l-a~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      .+..+.....+.+++|+|+++.| ++++.|        |.+++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d--------~~v~v~d~~  274 (391)
T 1l0q_A          236 ITARIPVGPDPAGIAVTPDGKKVYVALSFX--------NTVSVIDTA  274 (391)
T ss_dssp             EEEEEECCSSEEEEEECTTSSEEEEEETTT--------TEEEEEETT
T ss_pred             EEEEEecCCCccEEEEccCCCEEEEEcCCC--------CEEEEEECC
Confidence            88888777778999999999877 455544        678888875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.5e-34  Score=246.15  Aligned_cols=248  Identities=19%  Similarity=0.217  Sum_probs=190.3

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+.+|.+.|++++|+|++++|++|+.|++|++||+.... .......+.+|...|.+++|+|++ ++|++++.|+.|
T Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i  124 (377)
T 3dwl_C           47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG-TWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVI  124 (377)
T ss_dssp             ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCE
T ss_pred             EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-ceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeE
Confidence            345678999999999999999999999999999999997643 112334577899999999999974 688999999999


Q ss_pred             EEEeCCCCce---eeeEE--ecCceEEEEEccCCCEEEEEeCCCcEEEEEccC------------------CeEeeeecc
Q 021319           92 RLWDARSGKC---SQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRK------------------FKPIHRRKF  148 (314)
Q Consensus        92 ~iwd~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------------------~~~~~~~~~  148 (314)
                      ++||++.+..   .....  ....+.+++|+|++++|++++.|+.+++||++.                  .+.+....+
T Consensus       125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (377)
T 3dwl_C          125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS  204 (377)
T ss_dssp             EECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCC
T ss_pred             EEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccC
Confidence            9999988762   33333  455677899999999999999999999999852                  233333445


Q ss_pred             CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc----eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP----LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (314)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~  224 (314)
                      ...+.+++|+|+++.+++++.++.+++|+....+.    +..+..|...+.+++|+|++++|++++.++.+ +|+.....
T Consensus       205 ~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~  283 (377)
T 3dwl_C          205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESG  283 (377)
T ss_dssp             SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC--
T ss_pred             CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCc
Confidence            56789999999999999999999999999988776    77788999999999999999999999877766 66554111


Q ss_pred             ------------------------------EE------EEe----------------eecccCeEEEEEccCC-c---EE
Q 021319          225 ------------------------------CV------RTF----------------TKLEWPVRTISFSHTG-D---YI  248 (314)
Q Consensus       225 ------------------------------~~------~~~----------------~~~~~~v~~~~~sp~~-~---~l  248 (314)
                                                    ..      ..+                ..|...|.++++.+.. .   .|
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~  363 (377)
T 3dwl_C          284 WAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAF  363 (377)
T ss_dssp             -CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEE
T ss_pred             eEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEE
Confidence                                          00      111                1277889999976544 3   69


Q ss_pred             EEecCCceEEEEEC
Q 021319          249 ASASEDLFIDISNV  262 (314)
Q Consensus       249 ~s~s~d~~v~v~~~  262 (314)
                      +|+|.||.|++||+
T Consensus       364 ~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          364 TSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEETTSEEEEECC
T ss_pred             EeecCCCcEEEecC
Confidence            99999999999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.7e-33  Score=244.77  Aligned_cols=286  Identities=12%  Similarity=0.095  Sum_probs=196.7

Q ss_pred             cEEEEEE---CCCCCEEEEeeCCCcEEEeecCCCCCC-----ceeeEEeecCCCCEEEEEEcC-----------------
Q 021319           22 KVHSVAW---NCTGTKLASGSVDQTARVWHIEPHGHG-----KVKDIELRGHADSVDQLCWDP-----------------   76 (314)
Q Consensus        22 ~V~~v~~---s~~g~~l~s~~~D~~v~iw~~~~~~~~-----~~~~~~~~~h~~~v~~l~~~~-----------------   76 (314)
                      ..+++.|   +|++..|++++.|+.|++|+.......     .........+...+..+.|++                 
T Consensus        17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (393)
T 4gq1_A           17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS   96 (393)
T ss_dssp             CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred             CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence            3445566   455566777777999999986432211     111112223445555555543                 


Q ss_pred             --CCCCEEEEEeCCCcEEEEeCCCCceeeeEE------ecCceEEEEEcc--------CCCEEEEEeCCCcEEEEEccCC
Q 021319           77 --KHADLIATASGDKTVRLWDARSGKCSQQAE------LSGENINITYKP--------DGTHIAVGNRDDELTILDVRKF  140 (314)
Q Consensus        77 --~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~------~~~~~~~~~~~~--------~~~~l~~~~~d~~i~i~d~~~~  140 (314)
                        ....++++++.|++|++||.+.+.+.....      +...+..++|+|        |+++|++++.|+++++||+++.
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence              223579999999999999998887654322      234567899987        8899999999999999999887


Q ss_pred             eEeee-eccCcceeeEEeccCCC-eEEEEcCCceEEEEeCCCCCceee-------------------------eeecccc
Q 021319          141 KPIHR-RKFGYEVNEIAWNMTGE-MFFLTTGNGTVEVLTYPSLRPLDT-------------------------VVAHTAG  193 (314)
Q Consensus       141 ~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~-------------------------~~~~~~~  193 (314)
                      .++.. ..+...+.+++|+|++. .+++++.++.+++|++...+....                         ..+|...
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  256 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS  256 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence            66544 45667889999999875 788899999999999865432211                         1246667


Q ss_pred             eEEEEEC-CCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEE------------------EEcc--CCcEEEEec
Q 021319          194 CYCIAID-PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI------------------SFSH--TGDYIASAS  252 (314)
Q Consensus       194 i~~i~~~-~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~------------------~~sp--~~~~l~s~s  252 (314)
                      +.++.|+ |+++.+++++.|+++++||+........+..+...+..+                  .|+|  ++.++++|+
T Consensus       257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs  336 (393)
T 4gq1_A          257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS  336 (393)
T ss_dssp             CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred             ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence            8888886 799999999999999999998776655554443333333                  3333  345788899


Q ss_pred             CCceEEEEECCCCCeEEE-EeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          253 EDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       253 ~d~~v~v~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      .|+.|++||+.+++.+.. ..+..+|++|+|||++++||++++|+-+      .+|++||.+
T Consensus       337 ~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~------lvrL~gf~~  392 (393)
T 4gq1_A          337 QHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL------LTRLMGFTR  392 (393)
T ss_dssp             TTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE------EEEEGGGCC
T ss_pred             CCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE------EEEEeCccc
Confidence            999999999999887765 4467799999999999999999977532      278888854

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=247.80  Aligned_cols=239  Identities=15%  Similarity=0.259  Sum_probs=192.9

Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeEEec-------------CceEEEEEccC
Q 021319           64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-----------CSQQAELS-------------GENINITYKPD  119 (314)
Q Consensus        64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~-----------~~~~~~~~-------------~~~~~~~~~~~  119 (314)
                      .|.+.|.+++|+|+ +++|++|+.|+.|++||+.++.           +...+..+             ..+.+++|+|+
T Consensus        26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            46789999999997 5799999999999999998765           23333322             44668999999


Q ss_pred             C--CEEEEEeCCCcEEEEEccCCeEe---------------------------------------ee--eccCcceeeEE
Q 021319          120 G--THIAVGNRDDELTILDVRKFKPI---------------------------------------HR--RKFGYEVNEIA  156 (314)
Q Consensus       120 ~--~~l~~~~~d~~i~i~d~~~~~~~---------------------------------------~~--~~~~~~~~~~~  156 (314)
                      +  ..+++++.|+.|++||+...+..                                       ..  ..+...+.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  89999999999999998764321                                       01  23456789999


Q ss_pred             eccCCCeEEEEcCCceEEEEeCCC-CCcee-------eeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEE--
Q 021319          157 WNMTGEMFFLTTGNGTVEVLTYPS-LRPLD-------TVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC--  225 (314)
Q Consensus       157 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~-------~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~--  225 (314)
                      |+|+++.++++ .++.+++|++.. .+.+.       .+.+|...+++++|+|++ ++|++|+.||.|++||++++..  
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99999999998 899999999973 33333       245788999999999998 9999999999999999998775  


Q ss_pred             --EEEeeeccc------------CeEEEEEccCCcEEEEecCCceEEEEECCC-CCeEEEEeccCc--------------
Q 021319          226 --VRTFTKLEW------------PVRTISFSHTGDYIASASEDLFIDISNVHT-GRTVHQIPCRAA--------------  276 (314)
Q Consensus       226 --~~~~~~~~~------------~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~-~~~~~~~~~~~~--------------  276 (314)
                        +..+..+..            +|.+++|+|++++|++++. +.|++||+.+ ++.+..+.....              
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence              677777765            8999999999999999999 9999999987 777777654333              


Q ss_pred             --cceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          277 --MNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       277 --i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                        +..++|+|++.+|++++.|        |.++||+++.
T Consensus       343 ~~~~~~~~s~~~~~l~s~s~d--------g~v~iwd~~~  373 (447)
T 3dw8_B          343 FDKFECCWNGSDSVVMTGSYN--------NFFRMFDRNT  373 (447)
T ss_dssp             GCCCCEEECTTSSEEEEECST--------TEEEEEETTT
T ss_pred             ccceEEEECCCCCEEEEeccC--------CEEEEEEcCC
Confidence              2239999999999999977        6788998853

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.5e-32  Score=227.01  Aligned_cols=243  Identities=19%  Similarity=0.272  Sum_probs=198.0

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      +.+|...|++|+|+|++++|+||+.|++|++|++++.    .....+.+|...+.++.+.+   .++++++.++.+++|+
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~----~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~  135 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHD  135 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc----eeEEEecCccceEEEeecCC---CEEEEEecCCceEeee
Confidence            4578889999999999999999999999999998753    23346789999998877653   5899999999999999


Q ss_pred             CCCCcee-eeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe-----eeeccCcceeeEEeccCCCeEE---
Q 021319           96 ARSGKCS-QQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFF---  165 (314)
Q Consensus        96 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---  165 (314)
                      ....... .... .......+.+.++++++++++.|+.+++||+++.+..     ........+..+.+++.+..++   
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  215 (318)
T 4ggc_A          136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG  215 (318)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEE
T ss_pred             cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEE
Confidence            8776443 2222 3445667889999999999999999999999865432     1223345678888888776443   


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEe--eCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG--SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH  243 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp  243 (314)
                      .+..++.+++|+......... ..+...+..+.++|+++.++++  +.|+.|++||+.+++++.++.+|..+|.+++|+|
T Consensus       216 ~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp  294 (318)
T 4ggc_A          216 GGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP  294 (318)
T ss_dssp             ECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             ecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence            445779999999877665433 4567789999999999987765  4799999999999999999999999999999999


Q ss_pred             CCcEEEEecCCceEEEEECCCCC
Q 021319          244 TGDYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~  266 (314)
                      ++++|||||.|+.|++||+.+..
T Consensus       295 dg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          295 DGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TSSCEEEEETTTEEEEECCSCCC
T ss_pred             CCCEEEEEecCCeEEEEECCCCC
Confidence            99999999999999999987643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.5e-31  Score=227.95  Aligned_cols=252  Identities=14%  Similarity=0.144  Sum_probs=207.5

Q ss_pred             eeeecccccEEEEEECCCCCEE-EEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l-~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      +.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+..    ....+..+ ..+.+++|+|++..++++++.|+.|+
T Consensus        26 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~----~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~   99 (391)
T 1l0q_A           26 ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN----VIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLS   99 (391)
T ss_dssp             EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE----EEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe----EEEEEECC-CCccceEECCCCCEEEEEECCCCEEE
Confidence            3445554 58999999999976 677799999999986532    22234433 38999999998654556777789999


Q ss_pred             EEeCCCCceeeeEEecCceEEEEEccCCCEE-EEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeE-EEEcCC
Q 021319           93 LWDARSGKCSQQAELSGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-FLTTGN  170 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  170 (314)
                      +||+.+++.............++|+|+++.+ ++++.++.|.+||+++.+.+........+..+.|+|+++.+ +++..+
T Consensus       100 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~  179 (391)
T 1l0q_A          100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS  179 (391)
T ss_dssp             EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred             EEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCC
Confidence            9999999888777777778889999999988 67778999999999998888777777778999999999877 566788


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee---CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY  247 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  247 (314)
                      +.+++|+....+....+. +...+.+++|+|+++++++++   .++.|++||+.+++.+..+..+. .+.+++|+|++++
T Consensus       180 ~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~  257 (391)
T 1l0q_A          180 MSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKK  257 (391)
T ss_dssp             TEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSE
T ss_pred             CEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCE
Confidence            999999998776555443 556789999999999998887   68999999999998888887655 5789999999987


Q ss_pred             E-EEecCCceEEEEECCCCCeEEEEec
Q 021319          248 I-ASASEDLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       248 l-~s~s~d~~v~v~~~~~~~~~~~~~~  273 (314)
                      | ++++.|+.|++||+.+++.+..+..
T Consensus       258 l~~s~~~d~~v~v~d~~~~~~~~~~~~  284 (391)
T 1l0q_A          258 VYVALSFXNTVSVIDTATNTITATMAV  284 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence            7 6778999999999999988877754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.7e-32  Score=233.96  Aligned_cols=243  Identities=22%  Similarity=0.324  Sum_probs=200.9

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEE--cCCCCCEEEEEeCCCcE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW--DPKHADLIATASGDKTV   91 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~~~D~~v   91 (314)
                      +.+.+|.+.|++++|+|++++|++|+.|+.|++||++..     ....+.+|...|.+++|  +|+ +.+|++++.|+.|
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i  153 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN-----QAIQIAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTL  153 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----EEEEEEECSSCEEEEEEEECSS-CEEEEEEETTSEE
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC-----CceeeccccCceEEEEEEeCCC-CCEEEEccCCCcE
Confidence            567899999999999999999999999999999998753     22346789999999999  776 4689999999999


Q ss_pred             EEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee---ccCcceeeEEeccCCCe----E
Q 021319           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEM----F  164 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~  164 (314)
                      ++||+++++.............+.+.  ...+++++.++.+.+|+++........   ........+.+.+....    +
T Consensus       154 ~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (368)
T 3mmy_A          154 KFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF  231 (368)
T ss_dssp             EEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred             EEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence            99999999887777766666666555  458889999999999999876443222   22344556666555544    8


Q ss_pred             EEEcCCceEEEEeCCCC---Cceeeeeeccc------------ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          165 FLTTGNGTVEVLTYPSL---RPLDTVVAHTA------------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~---~~~~~~~~~~~------------~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                      ++++.+|.+++|++...   .....+..|..            .+++++|+|++++|++++.||.|++||+.+++++..+
T Consensus       232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence            99999999999999776   34555666665            6999999999999999999999999999999999999


Q ss_pred             eecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          230 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      ..|..+|.+++|+|++++|++++.|+....|+...
T Consensus       312 ~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          312 EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             cCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence            99999999999999999999999998666555443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.2e-32  Score=242.48  Aligned_cols=255  Identities=19%  Similarity=0.292  Sum_probs=198.8

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+.+.+|.+.|.+++|  ++++|++|+.||+|++||+++..    ....+.+|...|.+++|++   +.+++|+.|+.|+
T Consensus       166 ~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~  236 (435)
T 1p22_A          166 KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE----MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIA  236 (435)
T ss_dssp             EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC----EEEEECCCCSCEEEEECCT---TEEEEEETTSCEE
T ss_pred             EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc----EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEE
Confidence            4567899999999998  78999999999999999997642    3346778999999999974   4899999999999


Q ss_pred             EEeCCCCceee---eEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEE
Q 021319           93 LWDARSGKCSQ---QAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        93 iwd~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  167 (314)
                      +||+.++....   ... ....+.++.+  +++.+++++.|+.+++||+++.+.+.... +...+.++.+  ++..++++
T Consensus       237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g  312 (435)
T 1p22_A          237 VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG  312 (435)
T ss_dssp             EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEE
T ss_pred             EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEE
Confidence            99998876542   221 2334556666  78899999999999999999988877654 4556777777  57899999


Q ss_pred             cCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE---------EEEEeeecccCeEE
Q 021319          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML---------CVRTFTKLEWPVRT  238 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~  238 (314)
                      +.+|.+++|+....+.+..+.+|...+.++++  ++.++++|+.||.|++||+..+.         ++..+..|..+|.+
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~  390 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR  390 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred             eCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEE
Confidence            99999999999998888889999999999999  68899999999999999997655         78888899999999


Q ss_pred             EEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcC
Q 021319          239 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP  284 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~  284 (314)
                      ++|  ++.+|++++.|+.|++||+.+...........+..++.|.+
T Consensus       391 l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  434 (435)
T 1p22_A          391 LQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS  434 (435)
T ss_dssp             EEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             EEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeeec
Confidence            999  78999999999999999998876665555555667776654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-32  Score=233.88  Aligned_cols=238  Identities=15%  Similarity=0.193  Sum_probs=200.8

Q ss_pred             ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc----eeeeEEecCceEEEEEccCCC-EEEEEeCCCcEEEEEc
Q 021319           63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAELSGENINITYKPDGT-HIAVGNRDDELTILDV  137 (314)
Q Consensus        63 ~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~  137 (314)
                      .+|.+.|.+++|+|+ +++|++++.|+.|++||+.++.    ..........+.+++|+|+++ +|++++.|+.|.+||+
T Consensus         8 ~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            8 QAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             cCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            479999999999997 4689999999999999998877    444445566778899999999 9999999999999999


Q ss_pred             -cCCeEeeeec--cCcceeeEEeccCCCeEEEEcCCceEEEEeCCC---------CCceeeeeecccceEEEEECCCCCE
Q 021319          138 -RKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS---------LRPLDTVVAHTAGCYCIAIDPMGRY  205 (314)
Q Consensus       138 -~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~  205 (314)
                       ...+......  +...+.++.|++ +..+++++.++.+++|+...         .+++..+. |...+.+++|+|++  
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--  162 (342)
T 1yfq_A           87 IGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--  162 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--
T ss_pred             ccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--
Confidence             8776544444  667899999999 99999999999999999876         66665555 88899999999887  


Q ss_pred             EEEeeCCCeEEEeeCCC-cE--EEEEeeecccCeEEEEEcc-CCcEEEEecCCceEEEEECCCC------CeEEEEec-c
Q 021319          206 FAVGSADSLVSLWDISE-ML--CVRTFTKLEWPVRTISFSH-TGDYIASASEDLFIDISNVHTG------RTVHQIPC-R  274 (314)
Q Consensus       206 l~t~~~dg~i~vwd~~~-~~--~~~~~~~~~~~v~~~~~sp-~~~~l~s~s~d~~v~v~~~~~~------~~~~~~~~-~  274 (314)
                      +++++.|+.|++||+++ +.  .......+...+.+++|+| +++++++++.|+.+++|+....      +....+.. .
T Consensus       163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T 1yfq_A          163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence            89999999999999987 43  2234446778899999999 9999999999999999999876      66666653 2


Q ss_pred             ---------CccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          275 ---------AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       275 ---------~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                               ..|++++|+|++++|++++.|        |.++||+++.
T Consensus       243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~vwd~~~  282 (342)
T 1yfq_A          243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSD--------GIISCWNLQT  282 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETT--------SCEEEEETTT
T ss_pred             ccccccccceeEEEEEEcCCCCEEEEecCC--------ceEEEEcCcc
Confidence                     289999999999999999977        5788888753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.1e-32  Score=227.27  Aligned_cols=213  Identities=20%  Similarity=0.237  Sum_probs=163.8

Q ss_pred             ceeeecccccEEEEEECCC--CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCCC
Q 021319           13 SREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK   89 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~--g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D~   89 (314)
                      ...+.+|.+.|++++|+|+  +++|+||+.|++|+|||++....  .....+.+|...|.+++|+|+. +.+|++++.|+
T Consensus        46 ~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~  123 (297)
T 2pm7_B           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG  123 (297)
T ss_dssp             CEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             EEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce--EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC
Confidence            4678899999999999874  89999999999999999975321  1223567899999999999963 56899999999


Q ss_pred             cEEEEeCCCCcee--eeE-EecCceEEEEEccC-------------CCEEEEEeCCCcEEEEEccCCeEeeeeccCccee
Q 021319           90 TVRLWDARSGKCS--QQA-ELSGENINITYKPD-------------GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN  153 (314)
Q Consensus        90 ~v~iwd~~~~~~~--~~~-~~~~~~~~~~~~~~-------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  153 (314)
                      +|++||++++...  ... .......+++|+|+             +++|++++.|+.|++||++..+...         
T Consensus       124 ~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~---------  194 (297)
T 2pm7_B          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY---------  194 (297)
T ss_dssp             EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE---------
T ss_pred             cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE---------
Confidence            9999999876322  122 22345667889886             3566777777777777664321000         


Q ss_pred             eEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCC---CEEEEeeCCCeEEEeeCCCcE---EEE
Q 021319          154 EIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG---RYFAVGSADSLVSLWDISEML---CVR  227 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~t~~~dg~i~vwd~~~~~---~~~  227 (314)
                                                  .....+.+|...|++++|+|++   ++||+++.|++|++||++...   ...
T Consensus       195 ----------------------------~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~  246 (297)
T 2pm7_B          195 ----------------------------VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT  246 (297)
T ss_dssp             ----------------------------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE
T ss_pred             ----------------------------EEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcccee
Confidence                                        0123456799999999999984   899999999999999987632   222


Q ss_pred             Ee--eecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          228 TF--TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       228 ~~--~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      .+  ..+...|.+++|+|++++||+++.|+.|++|+...
T Consensus       247 ~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            33  45677899999999999999999999999999763

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.6e-31  Score=232.42  Aligned_cols=280  Identities=16%  Similarity=0.181  Sum_probs=195.2

Q ss_pred             ecccccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC--CCEEEEEeCCCcEEE
Q 021319           17 TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH--ADLIATASGDKTVRL   93 (314)
Q Consensus        17 ~gH~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s~~~D~~v~i   93 (314)
                      .+|...|.+++|+| ++.+|++++.|+.|++||+....    . .....+...+.++.++|..  ..++++++.|+.|++
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ----T-ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL  170 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE----E-EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc----c-ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEE
Confidence            36999999999999 77899999999999999987532    1 2233478889999999864  348999999999999


Q ss_pred             EeCCCCceeeeEE-ecCceEEEEEccCCC-EEEEEeCCCcEEEEEccCCeE-eee----------------eccCcceee
Q 021319           94 WDARSGKCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKP-IHR----------------RKFGYEVNE  154 (314)
Q Consensus        94 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~----------------~~~~~~~~~  154 (314)
                      ||+++++...... ....+.+++|+|+++ .+++++.|+.+.+||++.... +..                ..+...+.+
T Consensus       171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  250 (408)
T 4a11_B          171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG  250 (408)
T ss_dssp             EESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred             EeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence            9999888766655 345567899999998 588999999999999986542 111                123456899


Q ss_pred             EEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecc-----cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-----AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       155 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                      ++|+|++..+++++.+|.+++|++...+.......+.     ..+........+..+++++.++.|++||+.++..+..+
T Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  330 (408)
T 4a11_B          251 LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML  330 (408)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence            9999999999999999999999998766544332221     11222222233456666788999999999999999999


Q ss_pred             eecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCe-eEEEecCCcccccccceEEe
Q 021319          230 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNL-LAYAGDDKNKYQADEGVFRI  308 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~-la~~~~d~~~~~~~~~~~~~  308 (314)
                      .+|..+|.+++|+|++++|++++.|+.|++|++.+++.+......  .....++|.... +.++++        +|.++|
T Consensus       331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~  400 (408)
T 4a11_B          331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET--TTKSQLNPAFEDAWSSSDE--------EGGTSA  400 (408)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------------
T ss_pred             ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce--EeccccccccceeecccCc--------cCceee
Confidence            999999999999999999999999999999999998877654322  223445554333 333333        378999


Q ss_pred             ccc
Q 021319          309 YGF  311 (314)
Q Consensus       309 ~~~  311 (314)
                      |..
T Consensus       401 W~~  403 (408)
T 4a11_B          401 WSH  403 (408)
T ss_dssp             ---
T ss_pred             cCC
Confidence            975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=242.40  Aligned_cols=258  Identities=13%  Similarity=0.088  Sum_probs=199.4

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      +.+.||.+.|.+|+|+|+|       .++.+++|+.+.   ...  ..+ .|...|.+++|+|++ ..||+++.||.|++
T Consensus        46 ~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~---~~~--~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~i  111 (588)
T 2j04_A           46 KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ---NGL--LNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSV  111 (588)
T ss_dssp             SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS---SCS--STT-SCSCCEEEEEECSSS-SCEEEEETTSCEEE
T ss_pred             ceecCCCccEEEEEECCCC-------CcceEEEEeCCC---ceE--eec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEE
Confidence            4457999999999999999       567766665432   111  112 568889999999985 68999999999999


Q ss_pred             EeCCCCceeeeEEecC------ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE-------eeeec-----cCcceeeE
Q 021319           94 WDARSGKCSQQAELSG------ENINITYKPDGTHIAVGNRDDELTILDVRKFKP-------IHRRK-----FGYEVNEI  155 (314)
Q Consensus        94 wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~-----~~~~~~~~  155 (314)
                      ||...  +..... +.      ...+++|+|||++|++|+.||+|++||+.....       +...+     +...+.++
T Consensus       112 wd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sV  188 (588)
T 2j04_A          112 FKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHI  188 (588)
T ss_dssp             EETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEE
T ss_pred             EeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEE
Confidence            99543  434333 22      367899999999999999999999999987642       34432     23479999


Q ss_pred             EeccCCCeEEEEcCCceEEEEeCCCCCc---eeee-eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee
Q 021319          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRP---LDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~  231 (314)
                      +|+|++  +++++.|+.+++|+......   ..++ .+|...|.+++|+  ++.+|+++ +++|++||+.+.+......+
T Consensus       189 awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g  263 (588)
T 2j04_A          189 VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG  263 (588)
T ss_dssp             EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS
T ss_pred             EEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC
Confidence            999999  78888999999999877653   2345 3788899999999  68999887 69999999998877433337


Q ss_pred             cccCeEEEEE--ccCCcEEEEecCCceEEEEECCC------CC-----------------eEEEEeccCccceeEEcCCC
Q 021319          232 LEWPVRTISF--SHTGDYIASASEDLFIDISNVHT------GR-----------------TVHQIPCRAAMNSVEWNPKY  286 (314)
Q Consensus       232 ~~~~v~~~~~--sp~~~~l~s~s~d~~v~v~~~~~------~~-----------------~~~~~~~~~~i~~v~~~~~~  286 (314)
                      |...+..++|  +|++..|+++++||. ++|....      +.                 .+..+.....|++|+|||+|
T Consensus       264 h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG  342 (588)
T 2j04_A          264 SLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDG  342 (588)
T ss_dssp             CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTS
T ss_pred             CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCC
Confidence            9899999999  999999999999999 9998642      10                 01111111238899999999


Q ss_pred             CeeEEEec
Q 021319          287 NLLAYAGD  294 (314)
Q Consensus       287 ~~la~~~~  294 (314)
                      .++|++++
T Consensus       343 ~~lA~~~~  350 (588)
T 2j04_A          343 YSIAIVYD  350 (588)
T ss_dssp             SEEEEEEE
T ss_pred             CEEEEEEe
Confidence            99999885

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.4e-31  Score=229.67  Aligned_cols=234  Identities=11%  Similarity=0.131  Sum_probs=185.6

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEE-EEeCCCcEEEEEccC
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRK  139 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~  139 (314)
                      ....|...|.+++|+|++ .+|++|+.| .+++||..++......... ....+.+.++++.++ +++.|+.+++||+++
T Consensus        14 ~~~~h~~~V~~v~fs~dg-~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQ-SCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CCCCCEEEECTTS-SEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccCCCceEEEEECCCC-CEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            457899999999999985 688887766 5799998877655444333 345577888888875 577788999999999


Q ss_pred             CeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC-CceeeeeecccceEEEEECCCCCEEEE--eeCCCeEE
Q 021319          140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAV--GSADSLVS  216 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~t--~~~dg~i~  216 (314)
                      .+.+........+.++.++++.  ++++ .++.+++|++... +.+..+..   ....+++++  .+++.  |+.||.|+
T Consensus        91 ~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~  162 (355)
T 3vu4_A           91 KQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIH  162 (355)
T ss_dssp             TEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEE
T ss_pred             CcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEE
Confidence            9998888877788999887654  3333 4789999999876 55555544   344556676  56665  68999999


Q ss_pred             EeeCCCcE----------------EEEEeeecccCeEEEEEccCCcEEEEecCCce-EEEEECCCCCeEEEEe---ccCc
Q 021319          217 LWDISEML----------------CVRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIP---CRAA  276 (314)
Q Consensus       217 vwd~~~~~----------------~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~-v~v~~~~~~~~~~~~~---~~~~  276 (314)
                      +||+.++.                ++..+.+|..+|.+++|+|++++||||+.|+. |++||+.+++.+..+.   +...
T Consensus       163 iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~  242 (355)
T 3vu4_A          163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD  242 (355)
T ss_dssp             EEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSC
T ss_pred             EEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCc
Confidence            99998764                26778899999999999999999999999998 9999999999999987   6789


Q ss_pred             cceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          277 MNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       277 i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |++++|+|++++|++++.|        |+++||++++
T Consensus       243 v~~~~~s~~~~~l~s~s~d--------~~v~iw~~~~  271 (355)
T 3vu4_A          243 VVDMKWSTDGSKLAVVSDK--------WTLHVFEIFN  271 (355)
T ss_dssp             EEEEEECTTSCEEEEEETT--------CEEEEEESSC
T ss_pred             EEEEEECCCCCEEEEEECC--------CEEEEEEccC
Confidence            9999999999999999987        6899999854

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=8.4e-33  Score=240.42  Aligned_cols=243  Identities=16%  Similarity=0.155  Sum_probs=167.5

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCce-eeEEeecCCCCEEEEEEcCC-------CCCEEEEEeCCC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHADSVDQLCWDPK-------HADLIATASGDK   89 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~-------~~~~l~s~~~D~   89 (314)
                      +|...+....+++++.+|++|+.|++|||||++....... ....+.||.+.|++++|+|.       ++++|+|||.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            3444455555566677899999999999999875321111 11236799999999999872       357999999999


Q ss_pred             cEEEEeCCCCceee-eEEecCceEEEEEccCCC-EEEEEeCCCcEEEEEccCCeEeeee---------------------
Q 021319           90 TVRLWDARSGKCSQ-QAELSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRR---------------------  146 (314)
Q Consensus        90 ~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~---------------------  146 (314)
                      +|||||++++.... .........+++|+|++. +|++++.|+.|++||+++.+.....                     
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            99999998776544 445667788999999875 7999999999999999876532211                     


Q ss_pred             -----ccCcceeeEEec-cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEE------------------ECC-
Q 021319          147 -----KFGYEVNEIAWN-MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA------------------IDP-  201 (314)
Q Consensus       147 -----~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~------------------~~~-  201 (314)
                           .+...+..+.|. +++..++++..++.+++|++...+....+..|...+..+.                  ++| 
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence                 112345667775 7899999999999999999876554444444443333322                  222 


Q ss_pred             -CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEE
Q 021319          202 -MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS  260 (314)
Q Consensus       202 -~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~  260 (314)
                       ++.++++|+.||.|++||+.+++++..+..|..+|.+++|||+|++||+++.||.+.+.
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvr  386 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTR  386 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence             34467888899999999999988888888888999999999999999999998854443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-30  Score=230.70  Aligned_cols=234  Identities=13%  Similarity=0.127  Sum_probs=195.1

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc---eeeeEEec-----------------------------------
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGK---CSQQAELS-----------------------------------  108 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~---~~~~~~~~-----------------------------------  108 (314)
                      .++.+++|+|++. +|+++ .++.|++||+.+++   ........                                   
T Consensus         5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4678899999864 66554 57899999998887   43332211                                   


Q ss_pred             --------------------CceEEEEEccCCCEE-EEEeCCCcEEEEEcc--CCeEeeee---ccCcceeeEEeccCCC
Q 021319          109 --------------------GENINITYKPDGTHI-AVGNRDDELTILDVR--KFKPIHRR---KFGYEVNEIAWNMTGE  162 (314)
Q Consensus       109 --------------------~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~--~~~~~~~~---~~~~~~~~~~~~~~~~  162 (314)
                                          ..+.+++|+|++++| ++++.|+.+++||+.  ..+.+...   .+...+.+++|+|++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                                135679999999996 889999999999998  66555544   3456789999999999


Q ss_pred             eEEEEcCCceEEEEeCCCCCcee----eeeecccceEEEEECCC---CCEEEEeeCCCeEEEeeCCCcEEEEE-eeeccc
Q 021319          163 MFFLTTGNGTVEVLTYPSLRPLD----TVVAHTAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEMLCVRT-FTKLEW  234 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~i~~i~~~~~---~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~~~~  234 (314)
                      .++++..+|.+++|++...+...    .+.+|...|++++|+|+   +++|++|+.|+.|++||+.++.++.. +.+|..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            99999999999999987665443    67789999999999999   99999999999999999998887776 558889


Q ss_pred             CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec--------------------------cCccceeEEcCCCCe
Q 021319          235 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--------------------------RAAMNSVEWNPKYNL  288 (314)
Q Consensus       235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~--------------------------~~~i~~v~~~~~~~~  288 (314)
                      .|.+++|+ ++++|++++.|+.|++||+.+++.+..+..                          ...|.+++|+|++++
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  321 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF  321 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence            99999999 999999999999999999999998887752                          235889999999999


Q ss_pred             eEEEe-cCCcccccccceEEeccc
Q 021319          289 LAYAG-DDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       289 la~~~-~d~~~~~~~~~~~~~~~~  311 (314)
                      |++++ .|        |.++||++
T Consensus       322 l~~~~~~d--------~~i~iw~~  337 (450)
T 2vdu_B          322 VAFFVEAT--------KCIIILEM  337 (450)
T ss_dssp             EEEEETTC--------SEEEEEEE
T ss_pred             EEEEECCC--------CeEEEEEe
Confidence            99998 44        67888887

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.2e-31  Score=226.32  Aligned_cols=225  Identities=20%  Similarity=0.242  Sum_probs=163.1

Q ss_pred             ceeeecccccEEEEEECC--CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCCC
Q 021319           13 SREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK   89 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~--~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D~   89 (314)
                      ...+.+|.+.|++|+|+|  ++++|+||+.|++|++||++....  .....+.+|...|.+++|+|+. +.+|++|+.|+
T Consensus        50 ~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~  127 (316)
T 3bg1_A           50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW--EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG  127 (316)
T ss_dssp             EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC--CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS
T ss_pred             EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc--eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC
Confidence            456889999999999986  489999999999999999875321  2334577999999999999973 56899999999


Q ss_pred             cEEEEeCCCCceee---eE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319           90 TVRLWDARSGKCSQ---QA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        90 ~v~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      +|++||++.+....   .. .......+++|+|+...       +.  +.+....               .....+..++
T Consensus       128 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~--~~~~~~~---------------~~~~~~~~l~  183 (316)
T 3bg1_A          128 AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP-------GS--LIDHPSG---------------QKPNYIKRFA  183 (316)
T ss_dssp             CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---------------CCS---------------CCCCCCCBEE
T ss_pred             CEEEEecCCCCCcceeeeeccccCCcceEEEccccCC-------cc--ccccccc---------------cCccccceEE
Confidence            99999998653211   11 11223446778876310       00  0000000               0011234556


Q ss_pred             EEcCCceEEEEeCCCC---CceeeeeecccceEEEEECCCC----CEEEEeeCCCeEEEeeCCCc---E-EEEEeeeccc
Q 021319          166 LTTGNGTVEVLTYPSL---RPLDTVVAHTAGCYCIAIDPMG----RYFAVGSADSLVSLWDISEM---L-CVRTFTKLEW  234 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~---~~~~~~~~~~~~i~~i~~~~~~----~~l~t~~~dg~i~vwd~~~~---~-~~~~~~~~~~  234 (314)
                      +++.|+.+++|+....   +++..+.+|...|++++|+|++    ++||+++.|++|++||+.+.   . ..+.+..|..
T Consensus       184 sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  263 (316)
T 3bg1_A          184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND  263 (316)
T ss_dssp             CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS
T ss_pred             EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC
Confidence            6666666666665432   2345567899999999999986    89999999999999998752   1 1234456788


Q ss_pred             CeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319          235 PVRTISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      .|.+++|+|++++||+++.|+.|++|+..
T Consensus       264 ~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          264 VVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            99999999999999999999999999975

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.8e-29  Score=221.81  Aligned_cols=244  Identities=13%  Similarity=0.096  Sum_probs=204.8

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      .+.+|.+.|.+++|+|++.++++++.|+.|++||++...    ....+..|...+.+++|+|++..++++++.|+.|++|
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA----YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC----EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce----EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence            456899999999999999999999999999999987532    2335668899999999999865455677789999999


Q ss_pred             eCCCCceeeeEEecCceEEEEEccCCCEEEEEe--------CCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeE-E
Q 021319           95 DARSGKCSQQAELSGENINITYKPDGTHIAVGN--------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-F  165 (314)
Q Consensus        95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  165 (314)
                      |+++++.............++++|+++.+++++        .|+.|.+||+++.+.+........+..++|+|+++.+ +
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  319 (433)
T 3bws_A          240 DRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYV  319 (433)
T ss_dssp             ETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEE
T ss_pred             ECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEE
Confidence            999998877766666677899999999999887        4889999999988877776666678889999999755 5


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC---------------CCeEEEeeCCCcEEEEEee
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA---------------DSLVSLWDISEMLCVRTFT  230 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~---------------dg~i~vwd~~~~~~~~~~~  230 (314)
                      ++..++.+.+|+....+....+. +...+.+++|+|+++++++++.               ||.|++||+.+++.+..+.
T Consensus       320 ~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          320 SDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             EecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence            55889999999998776665554 6778999999999999888876               5799999999999888876


Q ss_pred             ecccCeEEEEEccCCcEEEEecC-CceEEEEECCC
Q 021319          231 KLEWPVRTISFSHTGDYIASASE-DLFIDISNVHT  264 (314)
Q Consensus       231 ~~~~~v~~~~~sp~~~~l~s~s~-d~~v~v~~~~~  264 (314)
                      . ...+.+++|+|++++|++++. |+.|++|++..
T Consensus       399 ~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          399 A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            5 446899999999999998875 99999999753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.1e-31  Score=227.47  Aligned_cols=222  Identities=11%  Similarity=0.112  Sum_probs=177.2

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccC---------CeEeeeec--
Q 021319           79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK---------FKPIHRRK--  147 (314)
Q Consensus        79 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~--  147 (314)
                      +.++++|+.|++|++||+.+++...... ...+..+.++|+   +++++.|+.+++|+...         .+.+....  
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  123 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD  123 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence            4689999999999999999988776655 233334566776   89999999999997653         33233332  


Q ss_pred             cCcceeeEEecc--CCCeEEEEcCCceEEEEeCCCCCceeeee-ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319          148 FGYEVNEIAWNM--TGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (314)
Q Consensus       148 ~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~  224 (314)
                      +...+.+++|+|  +++.+++++.+|.+++|++...+...... .|...+++++|+|++++|++|+.||.|++||++++.
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence            235689999999  99999999999999999998877755543 445579999999999999999999999999999888


Q ss_pred             EE-EEeee-cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe----ccCccc--eeEEcCCCCeeEEEec-C
Q 021319          225 CV-RTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP----CRAAMN--SVEWNPKYNLLAYAGD-D  295 (314)
Q Consensus       225 ~~-~~~~~-~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~----~~~~i~--~v~~~~~~~~la~~~~-d  295 (314)
                      .+ ..+.. |..+|.+++|+|++.+|++++.| .|++||+.+++.+..+.    +...+.  +++|+|++++|++++. |
T Consensus       204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d  282 (343)
T 3lrv_A          204 QASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES  282 (343)
T ss_dssp             SCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred             CCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence            77 77887 89999999999999999999955 99999999887654432    112344  6999999999999887 5


Q ss_pred             CcccccccceEEeccccC
Q 021319          296 KNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~  313 (314)
                              +.++||++++
T Consensus       283 --------~~i~v~~~~~  292 (343)
T 3lrv_A          283 --------NSLTIYKFDK  292 (343)
T ss_dssp             --------TEEEEEEECT
T ss_pred             --------CcEEEEEEcc
Confidence                    5788998743

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.1e-28  Score=201.51  Aligned_cols=278  Identities=14%  Similarity=0.121  Sum_probs=191.6

Q ss_pred             cEEEEEECCCCC---EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE-EEe--
Q 021319           22 KVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR-LWD--   95 (314)
Q Consensus        22 ~V~~v~~s~~g~---~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~-iwd--   95 (314)
                      .+.++.|-..|-   .|++++ ..+|++|+.... ..+.......+|..+|..+.+.|+..+++..+-..-.++ ++-  
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla  118 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDA-WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF  118 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEE-SSEEEEEEESSS-SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred             EEeeeeeccCCCCccEEEEec-cceEEEcccCCC-ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence            456666655443   677777 579999998763 344566788899999999999997766665554433332 221  


Q ss_pred             --CCCCceeeeEEecCceEEEEEccCCCEEEEEe--CCCcEEEEEccC-CeEeee-eccCcceeeEEecc---CCCeEEE
Q 021319           96 --ARSGKCSQQAELSGENINITYKPDGTHIAVGN--RDDELTILDVRK-FKPIHR-RKFGYEVNEIAWNM---TGEMFFL  166 (314)
Q Consensus        96 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~-~~~~~~-~~~~~~~~~~~~~~---~~~~~~~  166 (314)
                        .+.........-.+....+--.++++++.++.  .|+.|++|++.. .+.+.. ..+...+..++|++   +++.+++
T Consensus       119 ~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaS  198 (356)
T 2w18_A          119 CSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLG  198 (356)
T ss_dssp             C------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEE
T ss_pred             ECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEE
Confidence              11000011111111112221125565555543  599999999944 554443 34556788889999   7799999


Q ss_pred             EcCCceEEEEeCCCCCceeeeeecc---cceEEEEECCCCCEE------------EEeeCCCeEEEeeCCCcEEEEEee-
Q 021319          167 TTGNGTVEVLTYPSLRPLDTVVAHT---AGCYCIAIDPMGRYF------------AVGSADSLVSLWDISEMLCVRTFT-  230 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~l------------~t~~~dg~i~vwd~~~~~~~~~~~-  230 (314)
                      ++.|+++++|++.+.+.+.++.+|.   ..+.+++|+|+|+++            ++|+.|++|++||..+++++..+. 
T Consensus       199 gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~  278 (356)
T 2w18_A          199 TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY  278 (356)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred             ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence            9999999999999999888887643   357788999999876            668889999999999998876652 


Q ss_pred             ----ecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCcc-ceeEEcCCCCeeEEEecCCcccccccc
Q 021319          231 ----KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAM-NSVEWNPKYNLLAYAGDDKNKYQADEG  304 (314)
Q Consensus       231 ----~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i-~~v~~~~~~~~la~~~~d~~~~~~~~~  304 (314)
                          +|...+.+  .+.++.++|+++.|+.|+|||+.+++.+.++. |...+ .+|+|||++++||+|+.|        +
T Consensus       279 ~~p~Gh~~~~ls--g~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D--------~  348 (356)
T 2w18_A          279 CLPPGQAGRFLE--GDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD--------G  348 (356)
T ss_dssp             CCCTTCCCCEEE--EEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTT--------S
T ss_pred             eccCCCcceeEc--cccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECC--------C
Confidence                34433433  33448899999999999999999999999986 44444 469999999999999988        5


Q ss_pred             eEEeccc
Q 021319          305 VFRIYGF  311 (314)
Q Consensus       305 ~~~~~~~  311 (314)
                      ++|||++
T Consensus       349 TIklWd~  355 (356)
T 2w18_A          349 NIFVYHY  355 (356)
T ss_dssp             CEEEEEE
T ss_pred             cEEEecC
Confidence            8999986

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=5.7e-29  Score=206.66  Aligned_cols=210  Identities=10%  Similarity=0.083  Sum_probs=140.5

Q ss_pred             ccccEEEEEECCC----CCEEEEee--------------------CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEE
Q 021319           19 HKKKVHSVAWNCT----GTKLASGS--------------------VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW   74 (314)
Q Consensus        19 H~~~V~~v~~s~~----g~~l~s~~--------------------~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~   74 (314)
                      |...|++|+|+||    ++.+++++                    .|+.|++|++.+.+  + ....+.+|...+..++|
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~-~~~s~~~~~~~v~~l~f  186 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--G-GKENQFLMPPEETILTF  186 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--C-EEEEEEECCCSSCEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--c-eeeeeccCCCceeeEEe
Confidence            3457788888888    77777655                    39999999985532  2 22346678888888888


Q ss_pred             cC--CCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC----ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc
Q 021319           75 DP--KHADLIATASGDKTVRLWDARSGKCSQQAELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF  148 (314)
Q Consensus        75 ~~--~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  148 (314)
                      +|  .++.+|+|++.|++|||||+.++++...+..+.    ....++|+|+|+.+++++.+..  +|+            
T Consensus       187 s~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~------------  252 (356)
T 2w18_A          187 AEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KES------------  252 (356)
T ss_dssp             EEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------------------
T ss_pred             eccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cce------------
Confidence            87  235799999999999999999999888775322    2345789999988755432211  111            


Q ss_pred             CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee-----eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc
Q 021319          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-----VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM  223 (314)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~  223 (314)
                                     ++++..++++++|+....+.+..+     .+|.....+.++  ++..+|+++.|++|++||+.++
T Consensus       253 ---------------laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tG  315 (356)
T 2w18_A          253 ---------------ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLG  315 (356)
T ss_dssp             --------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred             ---------------eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCC
Confidence                           112233333333333332222111     133333333333  3789999999999999999999


Q ss_pred             EEEEEeeecccCeE-EEEEccCCcEEEEecCCceEEEEEC
Q 021319          224 LCVRTFTKLEWPVR-TISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       224 ~~~~~~~~~~~~v~-~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      ++++++++|...+. .++|||+|++|+||+.|+.|+|||+
T Consensus       316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999998876544 6899999999999999999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=9.4e-29  Score=216.31  Aligned_cols=284  Identities=14%  Similarity=0.118  Sum_probs=211.4

Q ss_pred             ccccEEEEEECCCCC-EEEEee----CCC----cEEEeec--CCCCCCceeeEEeecCCCCEEEEEEcCC----------
Q 021319           19 HKKKVHSVAWNCTGT-KLASGS----VDQ----TARVWHI--EPHGHGKVKDIELRGHADSVDQLCWDPK----------   77 (314)
Q Consensus        19 H~~~V~~v~~s~~g~-~l~s~~----~D~----~v~iw~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~----------   77 (314)
                      +...++..+|++.|. ++++|+    .||    .++|||+  .++.  .+....+.+|...+..+++.+.          
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~  138 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT--VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGI  138 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTC--EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCC--EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCC
Confidence            345788888998885 566776    467    9999999  6532  3334567888888877766541          


Q ss_pred             ---CCCEEEEEeCC------CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC---cEEEEEccCCeEeee
Q 021319           78 ---HADLIATASGD------KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD---ELTILDVRKFKPIHR  145 (314)
Q Consensus        78 ---~~~~l~s~~~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~  145 (314)
                         .+..++.++.+      ++|++||...+..............++|+|+|+.|+.++.++   .|.+||+++.+....
T Consensus       139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l  218 (415)
T 2hqs_A          139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV  218 (415)
T ss_dssp             CCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred             CCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence               02355555543      799999998655444444556778899999999999998875   899999998776554


Q ss_pred             eccCcceeeEEeccCCCeEE-EEcCCc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC-CC--eEEEee
Q 021319          146 RKFGYEVNEIAWNMTGEMFF-LTTGNG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-DS--LVSLWD  219 (314)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~-~~~~~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-dg--~i~vwd  219 (314)
                      ......+..++|+|+++.++ ++..++  .+++|+....+. ..+..|...+.+++|+|+|++|+.++. ++  .|.+||
T Consensus       219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            45556788999999999877 454444  588888876553 456678888999999999999887776 45  677889


Q ss_pred             CCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC---ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319          220 ISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       220 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      +.+++. ..+..+...+.+++|+|+|++|++++.+   ..|.+||+.+++.. .+.....+.+++|+|++++|++++.|+
T Consensus       298 ~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          298 INGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             TTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEET
T ss_pred             CCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCC
Confidence            887653 3444566678899999999999988864   68999999988764 343334789999999999999999876


Q ss_pred             cccccccceEEecccc
Q 021319          297 NKYQADEGVFRIYGFE  312 (314)
Q Consensus       297 ~~~~~~~~~~~~~~~~  312 (314)
                      .     ...+.+|+++
T Consensus       376 ~-----~~~l~~~d~~  386 (415)
T 2hqs_A          376 M-----GSVLNLVSTD  386 (415)
T ss_dssp             T-----EEEEEEEETT
T ss_pred             C-----ccEEEEEECC
Confidence            3     1256666653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.1e-27  Score=209.49  Aligned_cols=264  Identities=14%  Similarity=0.184  Sum_probs=202.6

Q ss_pred             eeeecccccEEEEEECC--------------CCCEEEEeeCC------CcEEEeecCCCCCCceeeEEeecCCCCEEEEE
Q 021319           14 REYTGHKKKVHSVAWNC--------------TGTKLASGSVD------QTARVWHIEPHGHGKVKDIELRGHADSVDQLC   73 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~--------------~g~~l~s~~~D------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~   73 (314)
                      +.+.+|...++.+++++              .+..++.++.+      +.|++||++..   .  ...+.+|...+.+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~---~--~~~l~~~~~~v~~~~  185 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY---N--QFVVHRSPQPLMSPA  185 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC---S--CEEEEEESSCEEEEE
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC---C--CEEEeCCCCcceeeE
Confidence            55778888888887764              26677776654      79999998642   1  235678999999999


Q ss_pred             EcCCCCCEEEEEeCCC---cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEE-EEeCCCc--EEEEEccCCeEeeeec
Q 021319           74 WDPKHADLIATASGDK---TVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDE--LTILDVRKFKPIHRRK  147 (314)
Q Consensus        74 ~~~~~~~~l~s~~~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~  147 (314)
                      |+|++ +.|++++.|+   .|++||+.++++............++|+|||+.|+ +++.++.  |.+||+++.+...-..
T Consensus       186 ~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~  264 (415)
T 2hqs_A          186 WSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD  264 (415)
T ss_dssp             ECTTS-SEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC
T ss_pred             EcCCC-CEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC
Confidence            99985 6888888875   99999999988765544555677899999999888 5655554  9999998876544334


Q ss_pred             cCcceeeEEeccCCCeEEEEcC-Cc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC---CeEEEeeCC
Q 021319          148 FGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDIS  221 (314)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~  221 (314)
                      +...+..++|+|+++.+++++. ++  .+++|+....+. ..+..+...+.+++|+|+|++|++++.+   ..|.+||+.
T Consensus       265 ~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~  343 (415)
T 2hqs_A          265 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  343 (415)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred             CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence            4567889999999998887775 44  677777766543 3444566778899999999999988765   589999998


Q ss_pred             CcEEEEEeeecccCeEEEEEccCCcEEEEecCCc---eEEEEECCCCCeEEEEe-ccCccceeEEcCCCC
Q 021319          222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYN  287 (314)
Q Consensus       222 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~---~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~  287 (314)
                      +++.. .+..+. .+.+++|+|+|++|++++.|+   .|.+||+.. +.+..+. +.+.|.+++|+|..+
T Consensus       344 ~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          344 TGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             TCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEECCCSSSEEEEEEECCCCC
T ss_pred             CCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEeeCCCCCCcCCccccccc
Confidence            87763 454454 789999999999999998876   799999874 4455554 457899999999643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=2.6e-26  Score=194.49  Aligned_cols=274  Identities=11%  Similarity=0.086  Sum_probs=200.6

Q ss_pred             EECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce-eee
Q 021319           27 AWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-SQQ  104 (314)
Q Consensus        27 ~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~-~~~  104 (314)
                      .|.+++++ +++++.++.|++||.++..   .. ..+..+...+ .++|+|++..+++++..++.|.+||..+++. ...
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~---~~-~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~   78 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLE---IL-NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA   78 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCC---EE-EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccc---ee-eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence            45666555 7888899999999987632   22 2333445556 9999998654555556689999999998887 666


Q ss_pred             EEecCceEE-EEEccCCCEEEEEeCCC---cEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE-cCCce-EEEEeC
Q 021319          105 AELSGENIN-ITYKPDGTHIAVGNRDD---ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGT-VEVLTY  178 (314)
Q Consensus       105 ~~~~~~~~~-~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~-~~~~~~  178 (314)
                      ......... ++++|++++++++..++   .|.+||+.+.+.+...........++|+|+++.++++ ..++. +.+|++
T Consensus        79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           79 IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            666666666 99999999999655553   8999999998888777777778999999999865554 55577 999998


Q ss_pred             CCCCce----eeeeecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEE---EEEeeecccCeEEEEEccCCcEEEE
Q 021319          179 PSLRPL----DTVVAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLC---VRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       179 ~~~~~~----~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      .....+    .........+..++|+|+|++++ ++..++.|++||+.+++.   +..+... ..+..++|+|+|++|+.
T Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v  237 (331)
T 3u4y_A          159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYV  237 (331)
T ss_dssp             CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEE
T ss_pred             CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEE
Confidence            653332    11223345689999999999655 455688999999988776   6666543 45788999999997765


Q ss_pred             ec-CCceEEEEECCCCCe--EEEEecc-----C---ccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          251 AS-EDLFIDISNVHTGRT--VHQIPCR-----A---AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       251 ~s-~d~~v~v~~~~~~~~--~~~~~~~-----~---~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ++ .++.|.+||..+++.  +..+...     .   ..+.++|+|+++.|++++.+.       |+++||+++.
T Consensus       238 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-------~~v~v~d~~~  304 (331)
T 3u4y_A          238 LTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS-------RELKVFTISG  304 (331)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT-------TEEEEEETTS
T ss_pred             EEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC-------CcEEEEEecC
Confidence            54 578899999998877  4433322     1   135689999999988777653       6888998854

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=1.5e-26  Score=208.48  Aligned_cols=281  Identities=11%  Similarity=0.082  Sum_probs=213.5

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcC----CCCCEEEEEe-CCCcEEEEeCC
Q 021319           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP----KHADLIATAS-GDKTVRLWDAR   97 (314)
Q Consensus        23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~l~s~~-~D~~v~iwd~~   97 (314)
                      ++.++|+|||++|++++.|++|++||+.... .. ....+. +...+..++|+|    ++ +++++++ .+++|.+||..
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~-~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PT-KVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CE-EEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETT
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCC-Cc-EEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEecc
Confidence            8999999999999999999999999993111 11 222344 445678999999    75 5666666 58999999999


Q ss_pred             CCceeeeEEec------------CceEEEEEccCCCEE-EEEeCCCcEEEEEccCCeEee--eeccCcceeeEEeccCCC
Q 021319           98 SGKCSQQAELS------------GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIH--RRKFGYEVNEIAWNMTGE  162 (314)
Q Consensus        98 ~~~~~~~~~~~------------~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~  162 (314)
                      ++++...+...            .....+.++|++..+ ++...++.|.+||....+.+.  .+..+..+..+.|+|+++
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~  336 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR  336 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence            99887766542            145678899977655 456678899999998754333  444556678899999999


Q ss_pred             eEEEE-cCCceEEEEeCCCCCceeeeee----cccceEEEEECCC-CCEEEEee-CCCeEEEeeCCC-------cEEEEE
Q 021319          163 MFFLT-TGNGTVEVLTYPSLRPLDTVVA----HTAGCYCIAIDPM-GRYFAVGS-ADSLVSLWDISE-------MLCVRT  228 (314)
Q Consensus       163 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~-~~~l~t~~-~dg~i~vwd~~~-------~~~~~~  228 (314)
                      +++++ ..++++.+|+..+.+.+..+..    |.+....+ ++|+ +.+++++. .|++|.+||+.+       ++++++
T Consensus       337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            87665 4688999999988877666653    54433333 4676 66777775 589999999988       899999


Q ss_pred             eeecccCeEEEEEccCCcEEEEecC-------CceEEEEECCCCCeE-EEEe---------ccCccceeEEcCCCCeeEE
Q 021319          229 FTKLEWPVRTISFSHTGDYIASASE-------DLFIDISNVHTGRTV-HQIP---------CRAAMNSVEWNPKYNLLAY  291 (314)
Q Consensus       229 ~~~~~~~v~~~~~sp~~~~l~s~s~-------d~~v~v~~~~~~~~~-~~~~---------~~~~i~~v~~~~~~~~la~  291 (314)
                      +..+...+..++|+|++++|++++.       +..|.|||+.+++.. ..++         +...+..++|+|+|..+++
T Consensus       416 l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~  495 (543)
T 1nir_A          416 LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF  495 (543)
T ss_dssp             EECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred             EEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence            9988877888999999999999872       679999999998877 4442         2457889999999999887


Q ss_pred             Eec-CCcccccccceEEecccc
Q 021319          292 AGD-DKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       292 ~~~-d~~~~~~~~~~~~~~~~~  312 (314)
                      +.- .++    ++++|.|||.+
T Consensus       496 s~~~~~~----~~~~i~v~D~~  513 (543)
T 1nir_A          496 SVWNGKN----DSSALVVVDDK  513 (543)
T ss_dssp             EEECCTT----SCCEEEEEETT
T ss_pred             EeecCCC----CCCeEEEEECC
Confidence            632 111    35788888864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=1.1e-25  Score=192.05  Aligned_cols=270  Identities=10%  Similarity=0.059  Sum_probs=212.8

Q ss_pred             ccccEEEEEECCCCCEEEEeeC-------CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           19 HKKKVHSVAWNCTGTKLASGSV-------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~-------D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ....+..++|+|+|+++++++.       ++.|.+||.++..  ...  .+. ....+..++|+|++..++++...++.|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--~~~--~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--VTQ--AIH-NDLKPFGATINNTTQTLWFGNTVNSAV  113 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--EEE--EEE-ESSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--EEE--EEe-cCCCcceEEECCCCCEEEEEecCCCEE
Confidence            3457889999999998888774       5689999987532  222  222 234467889999876566777778999


Q ss_pred             EEEeCCCCceeeeEEecC----------ceEEEEEccCCCEEEEEe--CCCcEEEEEccCCeEeeeec-cCcceeeEEec
Q 021319           92 RLWDARSGKCSQQAELSG----------ENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRK-FGYEVNEIAWN  158 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~  158 (314)
                      .+||..+++.........          ....+.++|+++.++++.  .++.|.+||+.+.+.+.... .+..+..++|+
T Consensus       114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s  193 (353)
T 3vgz_A          114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD  193 (353)
T ss_dssp             EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred             EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence            999999998777665532          146789999999888776  47789999999988887776 55568889999


Q ss_pred             cCCCeEEEEcCCceEEEEeCCCCCceeeeee----cccceEEEEECCCCCEEEEeeC-CCeEEEeeCCCcEEEEEeeecc
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA----HTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTKLE  233 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~  233 (314)
                      |+++.++++..++.+.+|+....+....+..    +...+..++|+|+++++++++. ++.|.+||..+++.+..+....
T Consensus       194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            9999999999999999999988776655543    4456788999999997776655 4899999999988877765433


Q ss_pred             cCeEEEEEccCCcEEEEe-cCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319          234 WPVRTISFSHTGDYIASA-SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       234 ~~v~~~~~sp~~~~l~s~-s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                       + ..++|+|++++++.+ ..++.|.+||..+++.+..+.....+.+++|+|+++.|+.+..+
T Consensus       274 -~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          274 -S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             -C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence             2 569999999965555 47899999999999998888877789999999999977666654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.8e-28  Score=227.66  Aligned_cols=213  Identities=21%  Similarity=0.247  Sum_probs=171.4

Q ss_pred             ceeeecccccEEEEEECCC--CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCCC
Q 021319           13 SREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK   89 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~--g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D~   89 (314)
                      ...+.+|.+.|++++|+|+  +++|++|+.||.|++||+....  ......+.+|...|.+++|+|+. ++++++|+.|+
T Consensus        46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc--ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence            4567899999999999998  9999999999999999997532  12344677899999999999973 57999999999


Q ss_pred             cEEEEeCCCCceeeeE---EecCceEEEEEcc-------------CCCEEEEEeCCCcEEEEEccCCeEeeeeccCccee
Q 021319           90 TVRLWDARSGKCSQQA---ELSGENINITYKP-------------DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN  153 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  153 (314)
                      .|++||++++......   .....+.+++|+|             ++..+++++.|+.|++||++......         
T Consensus       124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~---------  194 (753)
T 3jro_A          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY---------  194 (753)
T ss_dssp             EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE---------
T ss_pred             cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc---------
Confidence            9999999887433222   2345567889998             58888999999999999886532110         


Q ss_pred             eEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCC---CCEEEEeeCCCeEEEeeCCCcE-----E
Q 021319          154 EIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEML-----C  225 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~t~~~dg~i~vwd~~~~~-----~  225 (314)
                                                  .....+.+|...|++++|+|+   ++++++++.||.|++||+.++.     .
T Consensus       195 ----------------------------~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~  246 (753)
T 3jro_A          195 ----------------------------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT  246 (753)
T ss_dssp             ----------------------------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC
T ss_pred             ----------------------------eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE
Confidence                                        112344578899999999999   8999999999999999998753     2


Q ss_pred             EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          226 VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       226 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      +.....+...|.+++|+|++++|++++.||.|++|++.+
T Consensus       247 ~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             BSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            223345777899999999999999999999999999874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=5e-26  Score=193.27  Aligned_cols=268  Identities=13%  Similarity=0.196  Sum_probs=189.5

Q ss_pred             EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC-CcEEEEeCC--CCcee--eeEEec
Q 021319           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-KTVRLWDAR--SGKCS--QQAELS  108 (314)
Q Consensus        34 ~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D-~~v~iwd~~--~~~~~--~~~~~~  108 (314)
                      .+++++.|+.|++|+++..  +.........|...+..++|+|++ ++|++++.+ +.|++|++.  ++...  ......
T Consensus         7 l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHE--GALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTT--SCEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEeCCCCCeEEEEEECCC--CcEEEeeeEecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence            4555578999999999642  222233334577889999999985 566666665 999999987  55533  233334


Q ss_pred             CceEEEEEccCCCEEEEEeC-CCcEEEEEc---cCCeEeeeeccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCC-CC
Q 021319          109 GENINITYKPDGTHIAVGNR-DDELTILDV---RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPS-LR  182 (314)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~  182 (314)
                      .....++|+|+++.+++++. ++.+.+||+   ...+.+........+..++|+|+++.++++. .++.+.+|++.. .+
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            45667999999998877665 788999999   4444555555556688899999999887776 889999999876 33


Q ss_pred             cee----eeee-cccceEEEEECCCCCEEEEe-eCCCeEEEeeCCC--cE--EEEEeeec------ccCeEEEEEccCCc
Q 021319          183 PLD----TVVA-HTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISE--ML--CVRTFTKL------EWPVRTISFSHTGD  246 (314)
Q Consensus       183 ~~~----~~~~-~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~--~~--~~~~~~~~------~~~v~~~~~sp~~~  246 (314)
                      ...    .... ....+..++|+|++++++++ ..++.|.+||+..  +.  ....+...      ...+..++|+|+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~  243 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  243 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence            221    2222 23468899999999976554 4789999999953  32  23333211      22466899999998


Q ss_pred             EEE-EecCCceEEEEECC--CC--CeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          247 YIA-SASEDLFIDISNVH--TG--RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       247 ~l~-s~s~d~~v~v~~~~--~~--~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +|+ +...|+.|.+|++.  ++  +.+..+.....+.+++|+|++++|++++.+       +|.++||.+
T Consensus       244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------~~~v~v~~~  306 (343)
T 1ri6_A          244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK-------SHHISVYEI  306 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT-------TCEEEEEEE
T ss_pred             EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCC-------CCeEEEEEE
Confidence            877 55689999999998  33  344445555569999999999988887743       256667754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=1.6e-25  Score=201.85  Aligned_cols=278  Identities=12%  Similarity=0.068  Sum_probs=212.2

Q ss_pred             EECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC--CCCceee
Q 021319           27 AWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDA--RSGKCSQ  103 (314)
Q Consensus        27 ~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~--~~~~~~~  103 (314)
                      .|+|++..+++++.|++|++||..+..   . ...+. ++.  +..++++|++ ++|++++.|++|++||+  .++++..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~---~-~~~i~~g~~--~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~~  216 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKK---I-VKVIDTGYA--VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVA  216 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCC---E-EEEEECSTT--EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCce---E-EEEEecCcc--cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEEE
Confidence            378999999999999999999987532   2 22344 443  8899999985 68899999999999999  7888877


Q ss_pred             eEEecCceEEEEEcc----CCCEEEEEe-CCCcEEEEEccCCeEeeeeccC------------cceeeEEeccCCCeEE-
Q 021319          104 QAELSGENINITYKP----DGTHIAVGN-RDDELTILDVRKFKPIHRRKFG------------YEVNEIAWNMTGEMFF-  165 (314)
Q Consensus       104 ~~~~~~~~~~~~~~~----~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-  165 (314)
                      .+........++|+|    +|++++++. .++++.+||..+.+++..+...            ..+..+.+++++..++ 
T Consensus       217 ~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          217 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence            777666778899999    999999887 4899999999998887765431            2467888999776655 


Q ss_pred             EEcCCceEEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcEEEEEeee----cccCeEEE
Q 021319          166 LTTGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTK----LEWPVRTI  239 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~  239 (314)
                      ....++.+.+|+....+.+. ....+...+..++|+|+|++++++ ..+++|.+||..+++++.++..    |......+
T Consensus       297 s~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~  376 (543)
T 1nir_A          297 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF  376 (543)
T ss_dssp             EETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred             EECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence            45678999999987765443 122455668889999999986655 4578999999999998888764    33222333


Q ss_pred             EEccC-CcEEEEec-CCceEEEEECCC-------CCeEEEEec-cCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319          240 SFSHT-GDYIASAS-EDLFIDISNVHT-------GRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  309 (314)
Q Consensus       240 ~~sp~-~~~l~s~s-~d~~v~v~~~~~-------~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~  309 (314)
                       ++|+ +.+++|++ .|+.|.+||+.+       ++.++.++. ...+..|+|||+++.|++++.-..-. -.+++++||
T Consensus       377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~-~~~~~v~v~  454 (543)
T 1nir_A          377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA-RISQSVAVF  454 (543)
T ss_dssp             -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH-HHHTCEEEE
T ss_pred             -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc-ccCceEEEE
Confidence             4687 67777776 689999999988       888888875 45788999999999999876311000 014688888


Q ss_pred             cccC
Q 021319          310 GFEN  313 (314)
Q Consensus       310 ~~~~  313 (314)
                      +++.
T Consensus       455 d~~~  458 (543)
T 1nir_A          455 DLKN  458 (543)
T ss_dssp             ETTC
T ss_pred             ECCC
Confidence            8753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.9e-25  Score=189.62  Aligned_cols=269  Identities=14%  Similarity=0.122  Sum_probs=187.1

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCC-CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVD-QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D-~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      ..|...+.+++|+|+|++|++++.+ +.|++|+++...........+..+. .+..++|+|++..+++++..++.|.+||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            3467789999999999998888876 9999999973222222222333333 7889999998654445555689999999


Q ss_pred             CCCC---ceeeeEEecCceEEEEEccCCCEEEEEe-CCCcEEEEEccC-CeEee------eeccCcceeeEEeccCCCeE
Q 021319           96 ARSG---KCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRK-FKPIH------RRKFGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        96 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~  164 (314)
                      +..+   ..............++|+|+++.++++. .++.+.+||+.. .+...      ....+..+..++|+|+++.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l  192 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  192 (343)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             CCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence            9433   3333333344566789999999888877 889999999986 43321      12234467789999999976


Q ss_pred             EEE-cCCceEEEEeCCC--CCc--eeeee----ec--ccceEEEEECCCCCEEE-EeeCCCeEEEeeCC----CcEEEEE
Q 021319          165 FLT-TGNGTVEVLTYPS--LRP--LDTVV----AH--TAGCYCIAIDPMGRYFA-VGSADSLVSLWDIS----EMLCVRT  228 (314)
Q Consensus       165 ~~~-~~~g~~~~~~~~~--~~~--~~~~~----~~--~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~----~~~~~~~  228 (314)
                      +++ ..++.+.+|+...  .+.  .....    .+  ...+..++|+|++++|+ ++..++.|.+||+.    +.+.+..
T Consensus       193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~  272 (343)
T 1ri6_A          193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF  272 (343)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence            555 4789999999853  221  11111    11  23466899999998877 45578999999998    3445555


Q ss_pred             eeecccCeEEEEEccCCcEEEEec-CCceEEEEEC--CCCC--eEEEEeccCccceeEEcCCCC
Q 021319          229 FTKLEWPVRTISFSHTGDYIASAS-EDLFIDISNV--HTGR--TVHQIPCRAAMNSVEWNPKYN  287 (314)
Q Consensus       229 ~~~~~~~v~~~~~sp~~~~l~s~s-~d~~v~v~~~--~~~~--~~~~~~~~~~i~~v~~~~~~~  287 (314)
                      +..... +..++|+|++++|++++ .|+.+.+|++  .+++  .+..++......+++|.|+.+
T Consensus       273 ~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          273 QPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG  335 (343)
T ss_dssp             EECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred             ecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence            544444 88899999999888887 6899999954  4553  334455555677888887543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.95  E-value=2e-25  Score=189.02  Aligned_cols=263  Identities=12%  Similarity=0.078  Sum_probs=200.5

Q ss_pred             CEEEEeeCCCcEEEeecCCCCCCceeeEEee-cCCC-CEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC-
Q 021319           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHAD-SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-  109 (314)
Q Consensus        33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~-~h~~-~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-  109 (314)
                      ++|++++.++.|++||+.+..  ...  .+. ++.. .+..++|+|++..++++++.++.|.+||+.+++......... 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~--~~~--~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMA--VDK--VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE--EEE--EEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             cEEEEcCCCCeEEEEECCCCc--EEE--EEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence            478999999999999987531  111  222 2222 477899999875566777788999999999988776665433 


Q ss_pred             -----ceEEEEEccCCCEEEEEe------------CCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCce
Q 021319          110 -----ENINITYKPDGTHIAVGN------------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT  172 (314)
Q Consensus       110 -----~~~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  172 (314)
                           ....++|+|+++.++++.            .++.|.+||+.+.+.+.....+..+..++|+|+++.++++  ++.
T Consensus        78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~  155 (337)
T 1pby_B           78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRD  155 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSS
T ss_pred             ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCe
Confidence                 445689999999998886            5789999999988887777666678889999999988877  688


Q ss_pred             EEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC------------------------eEEEeeCCCcEEE-E
Q 021319          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS------------------------LVSLWDISEMLCV-R  227 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg------------------------~i~vwd~~~~~~~-~  227 (314)
                      +.+|+....+....+..+.. ...+.|+|+++.++..+.++                        .|.+||+.+++.. .
T Consensus       156 i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  234 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence            99999987766555443321 11237899988765544332                        4689999887654 2


Q ss_pred             EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEE
Q 021319          228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFR  307 (314)
Q Consensus       228 ~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~  307 (314)
                      .+..+...+..++|+|++++|+++  ++.|.+||..+++.+..+.....+.+++|+|+++.|++++.+        +.++
T Consensus       235 ~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--------~~i~  304 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL--------GDLA  304 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBS--------SEEE
T ss_pred             ecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCC--------CcEE
Confidence            333455568889999999999988  789999999999888888777789999999999988887654        5777


Q ss_pred             ecccc
Q 021319          308 IYGFE  312 (314)
Q Consensus       308 ~~~~~  312 (314)
                      ||+++
T Consensus       305 v~d~~  309 (337)
T 1pby_B          305 AYDAE  309 (337)
T ss_dssp             EEETT
T ss_pred             EEECc
Confidence            88774

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=7.2e-26  Score=212.02  Aligned_cols=278  Identities=9%  Similarity=0.092  Sum_probs=201.8

Q ss_pred             cccEEEEEECCCCCEEEEeeC-CC-----cEEEeecCCCCCCceeeEEeecCC------------------------CCE
Q 021319           20 KKKVHSVAWNCTGTKLASGSV-DQ-----TARVWHIEPHGHGKVKDIELRGHA------------------------DSV   69 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~-D~-----~v~iw~~~~~~~~~~~~~~~~~h~------------------------~~v   69 (314)
                      ...|.+++|||||++|++++. |+     .|++||++...   .. ..+..+.                        ..+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ---TR-LLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC---EE-EEECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc---ee-EccchhhcccccccccchhhhhhhhhhhccccCc
Confidence            456999999999999999998 88     89999987532   11 1222222                        237


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEeCCCC---ceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee
Q 021319           70 DQLCWDPKHADLIATASGDKTVRLWDARSG---KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR  146 (314)
Q Consensus        70 ~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  146 (314)
                      ..++|+|++ +.|++++. +.|.+||+.++   ..............++|+|||+.|+.++ ++.|.+||+...+.....
T Consensus       112 ~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          112 VDYQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             CCCEECTTS-SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred             ceeEECCCC-CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence            889999985 57777776 99999999888   5444333345667899999999999887 468999999887655433


Q ss_pred             ccCcc-----------------eeeEEeccCCCeEEEEcCCc---------------------------------eEEEE
Q 021319          147 KFGYE-----------------VNEIAWNMTGEMFFLTTGNG---------------------------------TVEVL  176 (314)
Q Consensus       147 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~g---------------------------------~~~~~  176 (314)
                      .....                 +..+.|+|+++.++++..++                                 .+.+|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            22211                 47799999999988876543                                 77778


Q ss_pred             eCCC-CCceeeee--ecccceEEEEECCCCCEEEEeeC-----CCeEEEeeCCCcEEEEEeeeccc----CeEEEEEccC
Q 021319          177 TYPS-LRPLDTVV--AHTAGCYCIAIDPMGRYFAVGSA-----DSLVSLWDISEMLCVRTFTKLEW----PVRTISFSHT  244 (314)
Q Consensus       177 ~~~~-~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~~-----dg~i~vwd~~~~~~~~~~~~~~~----~v~~~~~sp~  244 (314)
                      +... .+......  .|...+..++| |||++|+.++.     +..|.+||+.++++...+..+..    .+..++|+||
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence            8766 55433222  36677899999 99999887654     56899999998887766655432    4568899999


Q ss_pred             CcEEEEecCCceEEEEECC-CCCeEEEEe-ccCcccee-EEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          245 GDYIASASEDLFIDISNVH-TGRTVHQIP-CRAAMNSV-EWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       245 ~~~l~s~s~d~~v~v~~~~-~~~~~~~~~-~~~~i~~v-~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      |+++++++.|+.+++|.+. .++ ...+. +...+.++ +|+|+++.|++.+.+..     ..+++||.+
T Consensus       348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~-----~~~~~l~~~  411 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIES-----ARESQIYAV  411 (741)
T ss_dssp             SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSC-----TTCBEEEEE
T ss_pred             CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCC-----CceEEEEEE
Confidence            9999999999988888765 444 55544 34467777 69999988766654421     125666654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=1e-25  Score=187.01  Aligned_cols=252  Identities=14%  Similarity=0.158  Sum_probs=188.0

Q ss_pred             EeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC-CceeeeEEec--CceEE
Q 021319           37 SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-GKCSQQAELS--GENIN  113 (314)
Q Consensus        37 s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~-~~~~~~~~~~--~~~~~  113 (314)
                      +++.|+.|++||+...   .  ...+..|...|.+++|+|++ ++|++++ ++.|.+||+.+ ++........  .....
T Consensus        17 ~~~~~~~i~~~d~~~~---~--~~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~   89 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR---K--MRVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNND   89 (297)
T ss_dssp             -CCCCEEEEEEETTTT---E--EEEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred             CCCcceeEEEEeCCCC---c--eeeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEeccccccccccc
Confidence            4578999999998753   1  22456789999999999985 5777766 78999999998 7665443322  23456


Q ss_pred             EEEccCCCEEEEEe--CCCcEEEEEc--cCCeEeeeeccCcceeeEEeccCCCeEE-EEcCCceEEEEeCCC-CCceeee
Q 021319          114 ITYKPDGTHIAVGN--RDDELTILDV--RKFKPIHRRKFGYEVNEIAWNMTGEMFF-LTTGNGTVEVLTYPS-LRPLDTV  187 (314)
Q Consensus       114 ~~~~~~~~~l~~~~--~d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~-~~~~~~~  187 (314)
                      ++|+|+++.|+++.  .++...+|.+  ...+ .........+..++|+|+++.++ ++..++.+.+|.+.. ......+
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~  168 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL  168 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc
Confidence            89999999999998  3345555544  4433 23333334578889999999877 566788888888532 2334455


Q ss_pred             eecccceEEEEECCCCCEEEEee-CCCeEEEeeCC-CcEEEEEeeecccCeEEEEEccCCcEEEEecCC-----------
Q 021319          188 VAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDIS-EMLCVRTFTKLEWPVRTISFSHTGDYIASASED-----------  254 (314)
Q Consensus       188 ~~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----------  254 (314)
                      ..+...+.+++|+|++++++.++ .++.+++|++. ....+..+..+...+..++|+|++++|++++.+           
T Consensus       169 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  248 (297)
T 2ojh_A          169 THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD  248 (297)
T ss_dssp             CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred             ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence            56778899999999999887665 58899999885 445566677777788999999999999988876           


Q ss_pred             ceEEEEECCCCCeEEE--E-eccCccceeEEcCCCCeeEEEecCC
Q 021319          255 LFIDISNVHTGRTVHQ--I-PCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       255 ~~v~v~~~~~~~~~~~--~-~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      ..|.+||+.+++....  + .+...+.+++|+|+++.|++++.|.
T Consensus       249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            5699999988765332  2 3456899999999999999988774

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=4.4e-25  Score=205.64  Aligned_cols=278  Identities=12%  Similarity=0.110  Sum_probs=202.1

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC--
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--   98 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~--   98 (314)
                      ..|.+++|||| ..++.+. |+.|++||+...   .  ...+..+...+..++|+|++ +.|+++ .|+.|++||+.+  
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~---~--~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~  152 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLAR---K--VTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLG  152 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTT---E--EEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTT
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCC---c--eEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCccc
Confidence            56999999999 6655553 599999998652   1  23455677788899999986 567664 689999999988  


Q ss_pred             ---CceeeeEEecCc---------------eEEEEEccCCCEEEEEe---------------------------------
Q 021319           99 ---GKCSQQAELSGE---------------NINITYKPDGTHIAVGN---------------------------------  127 (314)
Q Consensus        99 ---~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~---------------------------------  127 (314)
                         ++..........               ...+.|+|||+.|++++                                 
T Consensus       153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence               765543322222               25688999999999887                                 


Q ss_pred             CCCcEEEEEccCCeEeeee---ccCcceeeEEeccCCCeEEEEcCCc-----eEEEEeCCCCCceeeee--eccc---ce
Q 021319          128 RDDELTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTGNG-----TVEVLTYPSLRPLDTVV--AHTA---GC  194 (314)
Q Consensus       128 ~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~--~~~~---~i  194 (314)
                      .+..+.+||+.+.+.....   .....+..++|+|+++.++++..++     .+.+|+..+.+....+.  .+..   .+
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            3457999999887654332   2234578899999999888876554     88999987763333332  1221   23


Q ss_pred             EEEEECC--CCCEEEEeeCCCeEEEeeCC-CcEEEEEeeecccCeEE-EEEccCCcEEEEec-CCc----eEEEEECCCC
Q 021319          195 YCIAIDP--MGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWPVRT-ISFSHTGDYIASAS-EDL----FIDISNVHTG  265 (314)
Q Consensus       195 ~~i~~~~--~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~-~~~sp~~~~l~s~s-~d~----~v~v~~~~~~  265 (314)
                      ..++|+|  +|+++++++.|+.+++|++. ++..+..+..+...+.. ++|+|+++.|+.++ .++    .|..|+..++
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence            6789999  99999999999999999886 66677778778888877 79999998876554 444    6777787776


Q ss_pred             CeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          266 RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       266 ~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      + +..+.+...+.+++|+|+++.|++...+..    .-+++.+|+++
T Consensus       393 ~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~----~p~~i~l~d~~  434 (706)
T 2z3z_A          393 K-TKDLTPESGMHRTQLSPDGSAIIDIFQSPT----VPRKVTVTNIG  434 (706)
T ss_dssp             C-CEESCCSSSEEEEEECTTSSEEEEEEECSS----CSCEEEEEESS
T ss_pred             C-ceeccCCCceEEEEECCCCCEEEEEecCCC----CCcEEEEEECC
Confidence            5 445556667899999999999887765432    12456666653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=3.3e-25  Score=202.11  Aligned_cols=262  Identities=10%  Similarity=-0.000  Sum_probs=194.8

Q ss_pred             ccccEEEEEECCCCCEEEEeeC-CCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeC---CCcEEE
Q 021319           19 HKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASG---DKTVRL   93 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~-D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~---D~~v~i   93 (314)
                      +..+|++++|+|||++|++++. ||+++||+++..   .  ...+..|. ..+..++|+|+  .++++++.   +...++
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---E--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHAL   92 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---E--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCC---C--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEE
Confidence            3668999999999999999887 999999998532   2  22445555 57999999987  57777765   566677


Q ss_pred             EeCCC---CceeeeEEecCceEEEEEccCCCE-EEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC
Q 021319           94 WDARS---GKCSQQAELSGENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        94 wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      |.+..   +... ...........+|+|+++. +++...++.+.+||+.+.+.........  ..++|+|+|+.++++..
T Consensus        93 ~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~  169 (582)
T 3o4h_A           93 FKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGF  169 (582)
T ss_dssp             EEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEE
T ss_pred             EEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEE
Confidence            65432   2222 2211222335578888864 3444455566699998876544333222  78899999999997766


Q ss_pred             C----ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC--eEEEeeCCCcEEEEEeeecccCeEEEE---
Q 021319          170 N----GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS--LVSLWDISEMLCVRTFTKLEWPVRTIS---  240 (314)
Q Consensus       170 ~----g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~---  240 (314)
                      +    +.+++|+..+.+. ..+..|...+..++|+|||+.|++++.++  .|.+||+.+++.. .+..+...+..++   
T Consensus       170 ~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~  247 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA  247 (582)
T ss_dssp             EETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred             cCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence            5    7788888776654 35667888899999999999999888888  8999999988776 6666666666666   


Q ss_pred             -----EccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319          241 -----FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       241 -----~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                           |+|||.++++++.|+.+++|++  |+.+.  ...+.+.+++|+ ++.++++++.+..
T Consensus       248 ~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          248 ITWLGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             EEEEEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             ccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCC
Confidence                 9999999999999999999999  65544  234678899999 9999998887753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1.8e-24  Score=202.61  Aligned_cols=267  Identities=12%  Similarity=0.142  Sum_probs=199.8

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC  101 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~  101 (314)
                      .|.+++|||||++|++++. +.|++||++.......  ..+..|...+..++|+|++ +.|+.++ ++.|.+||+.+++.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV--RQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC--CBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE--EEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCE
Confidence            3789999999999999986 9999999976410011  2456788889999999985 5777776 46999999988875


Q ss_pred             eeeEEecCc-----------------eEEEEEccCCCEEEEEeCCC---------------------------------c
Q 021319          102 SQQAELSGE-----------------NINITYKPDGTHIAVGNRDD---------------------------------E  131 (314)
Q Consensus       102 ~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~d~---------------------------------~  131 (314)
                      .........                 ...+.|+|||+.|+.++.|+                                 .
T Consensus       185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            543322221                 24589999999999887665                                 7


Q ss_pred             EEEEEccC-CeEeeee---ccCcceeeEEeccCCCeEEEEcC-----CceEEEEeCCCCCceeeeeeccc----ceEEEE
Q 021319          132 LTILDVRK-FKPIHRR---KFGYEVNEIAWNMTGEMFFLTTG-----NGTVEVLTYPSLRPLDTVVAHTA----GCYCIA  198 (314)
Q Consensus       132 i~i~d~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~----~i~~i~  198 (314)
                      |.+||+.+ .+.....   .....+..++| |+++.+++...     +..+.+|+..+.+....+..+..    .+..++
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  343 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR  343 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence            88889877 6543322   23456788999 99998887653     56788899887765555544443    346889


Q ss_pred             ECCCCCEEEEeeCCCeEEEeeCC-CcEEEEEeeecccCeEEE-EEccCCcEEE-EecCCc--eEEEEECCC-CCeEEEEe
Q 021319          199 IDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWPVRTI-SFSHTGDYIA-SASEDL--FIDISNVHT-GRTVHQIP  272 (314)
Q Consensus       199 ~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~-~~sp~~~~l~-s~s~d~--~v~v~~~~~-~~~~~~~~  272 (314)
                      |+|||+++++++.||.+++|.+. ++. ...+..+...+..+ +|+|+++.|+ +++.|+  .+++|++.. ++.+..+.
T Consensus       344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred             ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence            99999999999999988888765 344 67777888888887 5999998775 555555  899999864 55566665


Q ss_pred             ccCccceeEEcCCCCeeEEEecC
Q 021319          273 CRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       273 ~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      ....+.+++|+|+++.|+....+
T Consensus       423 ~~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          423 KAPGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             CSCSEEEEEECTTSSEEEEEEEE
T ss_pred             cCCCceEEEECCCCCEEEEEecC
Confidence            55678899999999998876544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=4.4e-24  Score=206.88  Aligned_cols=292  Identities=12%  Similarity=0.075  Sum_probs=214.1

Q ss_pred             ceeeecccccE-------EEEEECCCCCEEEEeeCC----C--cEEEeecCCCCCCc-----------------------
Q 021319           13 SREYTGHKKKV-------HSVAWNCTGTKLASGSVD----Q--TARVWHIEPHGHGK-----------------------   56 (314)
Q Consensus        13 ~~~~~gH~~~V-------~~v~~s~~g~~l~s~~~D----~--~v~iw~~~~~~~~~-----------------------   56 (314)
                      .+.+.+|...+       ..++|||||+.+++++.+    +  .|.+|+++......                       
T Consensus        92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~  171 (1045)
T 1k32_A           92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF  171 (1045)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred             eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence            45678898888       999999999977777755    3  46666654321000                       


Q ss_pred             ----------------------eeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC-CceeeeEEecCceEE
Q 021319           57 ----------------------VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-GKCSQQAELSGENIN  113 (314)
Q Consensus        57 ----------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~-~~~~~~~~~~~~~~~  113 (314)
                                            .....+.+|...+.++.|+++  .++++++.|+++++|.+.. +..............
T Consensus       172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~  249 (1045)
T 1k32_A          172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP  249 (1045)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCE
T ss_pred             CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcce
Confidence                                  001234578888999999875  5777888899999997643 222222222233445


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc------------CcceeeEEec-cCCCeEEEEcCCceEEEEeCCC
Q 021319          114 ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF------------GYEVNEIAWN-MTGEMFFLTTGNGTVEVLTYPS  180 (314)
Q Consensus       114 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------------~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~  180 (314)
                      .+|+|+|+.++.+ .++.+.+||+...+ +.....            ...+..++|+ |+++.++++. ++.+.+|+...
T Consensus       250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          250 RHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             EEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred             eeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence            6899999998887 48899999984332 222222            1257889999 9999888777 78899998876


Q ss_pred             CCceeeeeeccc-ceEEEEECCCCCEEEEeeCCCeEE-EeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEE
Q 021319          181 LRPLDTVVAHTA-GCYCIAIDPMGRYFAVGSADSLVS-LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFID  258 (314)
Q Consensus       181 ~~~~~~~~~~~~-~i~~i~~~~~~~~l~t~~~dg~i~-vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~  258 (314)
                      .+.. .+..|.. .+..++|+ +|+.++.++.++.+. +||+..+... .+..+...+..++|+|+|++|++++.++.++
T Consensus       327 ~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~  403 (1045)
T 1k32_A          327 TYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIM  403 (1045)
T ss_dssp             SBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEE
Confidence            5433 3455666 78999999 999999988888888 9998876544 3446777899999999999999999999999


Q ss_pred             EEECCCCCeEEEE-eccCccceeEEcCCCCeeEEEecCC--cccccccceEEecccc
Q 021319          259 ISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDK--NKYQADEGVFRIYGFE  312 (314)
Q Consensus       259 v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~d~--~~~~~~~~~~~~~~~~  312 (314)
                      +||+.+++..... .+...+.+++|+|++++||+++.+.  .......+++++|+++
T Consensus       404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          404 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            9999999877666 4566789999999999999988754  1111234688888875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=3.7e-24  Score=207.44  Aligned_cols=272  Identities=11%  Similarity=0.086  Sum_probs=209.0

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      +.+.+|...+.++.|+++ ..+++++.|+.++||.++..... .  ..+..|. .+...+|+|++. .|+.+ .++.|.+
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~-~--~~l~~~~-~~~~~~~SpDG~-~la~~-~~~~i~~  269 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD-L--RKHTSFT-DYYPRHLNTDGR-RILFS-KGGSIYI  269 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS-C--EECCCCC-SSCEEEEEESSS-CEEEE-ETTEEEE
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc-c--eEecCCC-CcceeeEcCCCC-EEEEE-eCCEEEE
Confidence            345789999999999998 67778888999999988653321 1  2344454 356779999864 55555 4899999


Q ss_pred             EeCCCCceeeeEEe------------cCceEEEEEc-cCCCEEEEEeCCCcEEEEEccCCeEeeeeccCc-ceeeEEecc
Q 021319           94 WDARSGKCSQQAEL------------SGENINITYK-PDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-EVNEIAWNM  159 (314)
Q Consensus        94 wd~~~~~~~~~~~~------------~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~  159 (314)
                      ||....... ....            ......++|+ |+|+.|+.+. ++.+.+|++...+......... .+..++|+ 
T Consensus       270 ~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-  346 (1045)
T 1k32_A          270 FNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-  346 (1045)
T ss_dssp             ECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-
T ss_pred             ecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-
Confidence            998544332 2211            1135679999 9999999887 7889999988766544333334 67889999 


Q ss_pred             CCCeEEEEcCCceEE-EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE
Q 021319          160 TGEMFFLTTGNGTVE-VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT  238 (314)
Q Consensus       160 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  238 (314)
                      ++..++.+..++.+. +|+....+.. .+..|...+..++|+|+|++|++++.++.|++||+.+++.......+...+..
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~  425 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD  425 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred             CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence            998888888888888 8887665433 33467788999999999999999999999999999998877777678888999


Q ss_pred             EEEccCCcEEEEecCCc----------eEEEEECCCCCeEEEE-eccCccceeEEcCCCCeeEEEecCCc
Q 021319          239 ISFSHTGDYIASASEDL----------FIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~d~----------~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      ++|||||++|++++.++          .|++||+.+++ +..+ .+...+.+++|+|+++.|++++.+..
T Consensus       426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~  494 (1045)
T 1k32_A          426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSL  494 (1045)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCC
T ss_pred             eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccC
Confidence            99999999999887654          89999999877 4443 34556888999999999998887543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1e-24  Score=203.59  Aligned_cols=279  Identities=11%  Similarity=0.088  Sum_probs=192.6

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC---CEEEEEEcCCCCCEEEEEeCC---------
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASGD---------   88 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~D---------   88 (314)
                      ..+.+++|+|||+++++ +.||+|++||+++...    ...+.+|..   .|..++|+|++ +.|++++.+         
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~----~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS----TVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC----EEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCC
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcE----EEEeccccccccccceEEECCCC-CEEEEEecCccceeecce
Confidence            34788999999997766 7899999999976431    223455554   38999999985 677888764         


Q ss_pred             CcEEEEeCCCCceeeeEEecC---ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC-c--------------
Q 021319           89 KTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-Y--------------  150 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~--------------  150 (314)
                      +.+.+||+.+++.........   ....++|+|||+.|+.++. +.|.+||+...+.......+ .              
T Consensus        91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            788899999887632222111   1446889999999998876 78999999876554332221 1              


Q ss_pred             ----ceeeEEeccCCCeEEEEcCCc----------------------------------eEEEEeCCCCCceeeeeec--
Q 021319          151 ----EVNEIAWNMTGEMFFLTTGNG----------------------------------TVEVLTYPSLRPLDTVVAH--  190 (314)
Q Consensus       151 ----~~~~~~~~~~~~~~~~~~~~g----------------------------------~~~~~~~~~~~~~~~~~~~--  190 (314)
                          .+..++|+|+++.++++..++                                  .+.+|+....+....+..+  
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~  249 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence                226799999999988876432                                  7888888766544444433  


Q ss_pred             ----ccceEEEEECCCCCEEEEeeC----CCeEEEeeCCCcEEEEEeeec-ccCe----EEEEEccCCcEEEE--ecCCc
Q 021319          191 ----TAGCYCIAIDPMGRYFAVGSA----DSLVSLWDISEMLCVRTFTKL-EWPV----RTISFSHTGDYIAS--ASEDL  255 (314)
Q Consensus       191 ----~~~i~~i~~~~~~~~l~t~~~----dg~i~vwd~~~~~~~~~~~~~-~~~v----~~~~~sp~~~~l~s--~s~d~  255 (314)
                          ...+..++|+|||+++++...    +..|.+||+.++++...+..+ ...+    ..++|+|||+.|+.  +..|+
T Consensus       250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  329 (723)
T 1xfd_A          250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG  329 (723)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred             CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence                556889999999999876643    357999999988776655433 2223    37899999998775  44666


Q ss_pred             ------eEEEEEC-CCCCe--EEEEec-cCccce-eEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          256 ------FIDISNV-HTGRT--VHQIPC-RAAMNS-VEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       256 ------~v~v~~~-~~~~~--~~~~~~-~~~i~~-v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                            .+.+||. .++..  ...+.. ...+.. ++|+|+++.|++.+.+.     ..++++||.+
T Consensus       330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~~~~l~~~  391 (723)
T 1xfd_A          330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED-----LPRRRQLYSA  391 (723)
T ss_dssp             SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS-----CTTCCEEEEE
T ss_pred             CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC-----CCcceEEEEE
Confidence                  5667773 33331  344432 234444 69999999998777652     1245566655

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=2e-22  Score=171.89  Aligned_cols=264  Identities=11%  Similarity=0.155  Sum_probs=179.9

Q ss_pred             eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC--CCcEEEEeCCCCceeeeEE---ecCceEE
Q 021319           39 SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAE---LSGENIN  113 (314)
Q Consensus        39 ~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--D~~v~iwd~~~~~~~~~~~---~~~~~~~  113 (314)
                      +.++.+.+|.++... +.........+...+..++|+|++. +++++..  ++.|.+||+.++.......   .......
T Consensus        13 ~~~~~i~v~~~d~~t-g~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           13 KTSQGIYQGTLDTTA-KTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             SSCCEEEEEEEETTT-TEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred             CCCCCEEEEEEcCCC-CeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence            346789999887532 2333334445667778899999865 5544432  6899999997776433222   2345567


Q ss_pred             EEEccCCCEEEEEe-CCCcEEEEEcc---CCeEeeeeccC----------cceeeEEeccCCCeEEEEcCCceEEEEeCC
Q 021319          114 ITYKPDGTHIAVGN-RDDELTILDVR---KFKPIHRRKFG----------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYP  179 (314)
Q Consensus       114 ~~~~~~~~~l~~~~-~d~~i~i~d~~---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  179 (314)
                      ++|+|++++|++++ .++.+.+|++.   ..+.+......          ..+..++|+|+++.+++...++.+.+|+..
T Consensus        91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A           91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence            99999999888887 67889999986   22333332221          236779999999966666778999999987


Q ss_pred             CCCcee---eeee-cccceEEEEECCCCCEEEE-eeCCCeEEEeeCCC--cEE--EEEeeecc------cCeEEEEEccC
Q 021319          180 SLRPLD---TVVA-HTAGCYCIAIDPMGRYFAV-GSADSLVSLWDISE--MLC--VRTFTKLE------WPVRTISFSHT  244 (314)
Q Consensus       180 ~~~~~~---~~~~-~~~~i~~i~~~~~~~~l~t-~~~dg~i~vwd~~~--~~~--~~~~~~~~------~~v~~~~~sp~  244 (314)
                      ....+.   .+.. ....+..++|+|+|+++++ +..++.|.+|++..  +..  +..+....      ..+..++|+|+
T Consensus       171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd  250 (347)
T 3hfq_A          171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD  250 (347)
T ss_dssp             TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred             CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence            322222   1222 2236788999999996655 56678999999863  432  23333222      34788999999


Q ss_pred             CcEE-EEecCCceEEEEECCC-C--CeEEEEec-cCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          245 GDYI-ASASEDLFIDISNVHT-G--RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       245 ~~~l-~s~s~d~~v~v~~~~~-~--~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      |++| ++...++.|.+|++.. +  +.+..++. ...+..++|+|++++|++++.+.       +.++||.+
T Consensus       251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-------~~v~v~~~  315 (347)
T 3hfq_A          251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-------DNATLYAR  315 (347)
T ss_dssp             SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT-------TEEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-------CcEEEEEE
Confidence            9987 5556789999999873 2  33444443 44689999999999998888653       56777744

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=1.7e-22  Score=170.99  Aligned_cols=245  Identities=12%  Similarity=0.075  Sum_probs=177.3

Q ss_pred             eecccccEEEEEECCCCCEEEEeeC-CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC---cE
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK---TV   91 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~-D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~---~v   91 (314)
                      +..+...+ .++|+|+|+++++++. ++.|.+||.++..   .....+..+..+..+++|+|++ ++++++..++   .|
T Consensus        36 ~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i  110 (331)
T 3u4y_A           36 ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP---PKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNM  110 (331)
T ss_dssp             EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS---CEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEE
T ss_pred             EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc---eeEEecccCCCCccceEECCCC-CEEEEecCCCCcccE
Confidence            33445566 9999999997666654 8999999987643   2133455566666669999985 5666555543   89


Q ss_pred             EEEeCCCCceeeeEEecCceEEEEEccCCCEEEEE-eCCCc-EEEEEccCCeEe-----eeeccCcceeeEEeccCCCeE
Q 021319           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDE-LTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~-i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      .+||+.+++.............++|+|+|++++++ ..++. +.+|++.....+     .....+.....++|+|+++.+
T Consensus       111 ~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l  190 (331)
T 3u4y_A          111 QSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA  190 (331)
T ss_dssp             EEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE
T ss_pred             EEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE
Confidence            99999999888777777777889999999866554 55688 999998653222     222334567889999999965


Q ss_pred             EE-EcCCceEEEEeCCCCCc---eeeeeecccceEEEEECCCCCEEEEee-CCCeEEEeeCCCcEE--EEEeeec----c
Q 021319          165 FL-TTGNGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLC--VRTFTKL----E  233 (314)
Q Consensus       165 ~~-~~~~g~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~~~--~~~~~~~----~  233 (314)
                      ++ ...++.+.+|+....+.   +..+. ....+..++|+|+|+++++++ .++.|.+||+.+++.  +..+...    .
T Consensus       191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  269 (331)
T 3u4y_A          191 FVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP  269 (331)
T ss_dssp             EEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC
T ss_pred             EEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC
Confidence            54 45689999999987776   55554 345678999999999766554 577899999998876  4443322    1


Q ss_pred             c---CeEEEEEccCCcEEEEec-CCceEEEEECCCCC
Q 021319          234 W---PVRTISFSHTGDYIASAS-EDLFIDISNVHTGR  266 (314)
Q Consensus       234 ~---~v~~~~~sp~~~~l~s~s-~d~~v~v~~~~~~~  266 (314)
                      .   ....++|+|++++|+.++ .++.|.+||+.+..
T Consensus       270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          270 RPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            1   235589999999886655 56799999997644

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.92  E-value=6.1e-23  Score=174.69  Aligned_cols=240  Identities=11%  Similarity=0.039  Sum_probs=178.9

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceee
Q 021319           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (314)
Q Consensus        25 ~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~  103 (314)
                      .+++++++.++++++.++.|++||+.+..   . ...+..+. ..+..++|+|++..+++++..++.|.+||+.+++...
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~---~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDT---V-YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTE---E-EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCc---E-EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            35678889999999999999999987532   1 12233222 2567899999865456677789999999999888776


Q ss_pred             eEEecCc-------eEEEEEccCCCEEEEEeCC------------CcEEEEEccCCe---EeeeeccCcceeeEEeccCC
Q 021319          104 QAELSGE-------NINITYKPDGTHIAVGNRD------------DELTILDVRKFK---PIHRRKFGYEVNEIAWNMTG  161 (314)
Q Consensus       104 ~~~~~~~-------~~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~  161 (314)
                      .......       ...++|+|+|++++++..+            +.+.+||+.+.+   .+........+.+++|+|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  159 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence            6554321       4568899999999998865            899999998733   23333344467888899999


Q ss_pred             CeEEEEcCCceEEEEeCCCCCceeeeeec---------------------------------------------------
Q 021319          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAH---------------------------------------------------  190 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---------------------------------------------------  190 (314)
                      + ++++.  +.+.+|+..+.+....+..+                                                   
T Consensus       160 ~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  236 (349)
T 1jmx_B          160 S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  236 (349)
T ss_dssp             C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence            9 55543  34888887665544333211                                                   


Q ss_pred             -----------------ccceEEEEECC-CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEec
Q 021319          191 -----------------TAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS  252 (314)
Q Consensus       191 -----------------~~~i~~i~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s  252 (314)
                                       ...+..++++| ++++++++  ++.|.+||+.+++.++.+.. ...+..++|+|++++|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEES
T ss_pred             EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEec
Confidence                             11345678889 99999888  88999999999988777653 34577899999999999988


Q ss_pred             CCceEEEEECCCCCeEEEEecc
Q 021319          253 EDLFIDISNVHTGRTVHQIPCR  274 (314)
Q Consensus       253 ~d~~v~v~~~~~~~~~~~~~~~  274 (314)
                      .++.|.+||..+++.+..++..
T Consensus       314 ~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          314 TFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             BSSEEEEEETTTTEEEEEEECS
T ss_pred             CCCeEEEEeccccceeeeeecC
Confidence            8999999999999988887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=1.5e-23  Score=173.94  Aligned_cols=235  Identities=13%  Similarity=0.097  Sum_probs=174.3

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCC-CCCCceeeEEeecC-CCCEEEEEEcCCCCCEEEEEe--CCC
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-HGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATAS--GDK   89 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~-~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~--~D~   89 (314)
                      +.+..|...|.+++|+|+|++|++++ ++.|++||++. ...   . ....+| ...+.+++|+|++ ..|++++  .++
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---~-~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~  108 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---E-KVDTGFATICNNDHGISPDG-ALYAISDKVEFG  108 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---E-ECCCTTCCCBCSCCEECTTS-SEEEEEECTTTS
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---e-EeccccccccccceEECCCC-CEEEEEEeCCCC
Confidence            44667899999999999999999987 78999999875 321   1 123344 4678899999985 5777887  345


Q ss_pred             cEEEEe--CCCCceeeeEEecCceEEEEEccCCCEEE-EEeCCCcEEEEEcc--CCeEeeeeccCcceeeEEeccCCCeE
Q 021319           90 TVRLWD--ARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVR--KFKPIHRRKFGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        90 ~v~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ..+||.  ..++.. ...........++|+|+++.|+ ++..++.+.+|++.  ..+..........+..+.|+|+++.+
T Consensus       109 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  187 (297)
T 2ojh_A          109 KSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWI  187 (297)
T ss_dssp             SCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEE
T ss_pred             cceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEE
Confidence            566654  444442 2333334466789999999887 67788989999854  33333333445568899999999988


Q ss_pred             EEEc-CCceEEEEeCC-CCCceeeeeecccceEEEEECCCCCEEEEeeCC-----------CeEEEeeCCCcEE--EEEe
Q 021319          165 FLTT-GNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-----------SLVSLWDISEMLC--VRTF  229 (314)
Q Consensus       165 ~~~~-~~g~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d-----------g~i~vwd~~~~~~--~~~~  229 (314)
                      +++. .++.+.+|.+. .......+..|...+.+++|+|++++|++++.+           +.|.+||+.+++.  +..+
T Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  267 (297)
T 2ojh_A          188 YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL  267 (297)
T ss_dssp             EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred             EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence            7765 58888888875 444556666777789999999999999888766           5699999987644  4445


Q ss_pred             eecccCeEEEEEccCCcEEEEecCCc
Q 021319          230 TKLEWPVRTISFSHTGDYIASASEDL  255 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~d~  255 (314)
                      ..+...+..++|+|++++|++++.|.
T Consensus       268 ~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          268 FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCCcccccceECCCCCEEEEEEecc
Confidence            56777899999999999999887663

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=4.7e-22  Score=169.55  Aligned_cols=238  Identities=11%  Similarity=0.095  Sum_probs=187.2

Q ss_pred             CCCEEEEEEcCCCCCEEEEEeC-------CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEE-eCCCcEEEEEc
Q 021319           66 ADSVDQLCWDPKHADLIATASG-------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDV  137 (314)
Q Consensus        66 ~~~v~~l~~~~~~~~~l~s~~~-------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~  137 (314)
                      ...+..++++|++. .++.++.       ++.|.+||..+++.............++++|+++.++++ ..++.+.+||+
T Consensus        40 ~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            45678899999864 4555542       678999999999888877776667789999999966655 55789999999


Q ss_pred             cCCeEeeeeccCc----------ceeeEEeccCCCeEEEEc--CCceEEEEeCCCCCceeeeeecccceEEEEECCCCCE
Q 021319          138 RKFKPIHRRKFGY----------EVNEIAWNMTGEMFFLTT--GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY  205 (314)
Q Consensus       138 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  205 (314)
                      .+.+.+.....+.          ....++++|+++.++++.  .++.+.+|+....+....+..+...+.+++|+|++++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            9888766655421          257899999999877765  4788999999887776666545666889999999999


Q ss_pred             EEEeeCCCeEEEeeCCCcEEEEEeee----cccCeEEEEEccCCcEEEEecC-CceEEEEECCCCCeEEEEeccCcccee
Q 021319          206 FAVGSADSLVSLWDISEMLCVRTFTK----LEWPVRTISFSHTGDYIASASE-DLFIDISNVHTGRTVHQIPCRAAMNSV  280 (314)
Q Consensus       206 l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~s~s~-d~~v~v~~~~~~~~~~~~~~~~~i~~v  280 (314)
                      +++++.++.|.+||+.+++.+..+..    +...+..++|+|++++++.++. ++.|.+||..+++.+..+....+ ..+
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~  277 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAV  277 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCE
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceE
Confidence            99999999999999999988877654    3445788999999998776665 59999999999998888775443 679


Q ss_pred             EEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          281 EWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       281 ~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +|+|+++.++.++..       ++++.+|+.+
T Consensus       278 ~~s~dg~~l~v~~~~-------~~~v~~~d~~  302 (353)
T 3vgz_A          278 LFNPARNEAYVTHRQ-------AGKVSVIDAK  302 (353)
T ss_dssp             EEETTTTEEEEEETT-------TTEEEEEETT
T ss_pred             EECCCCCEEEEEECC-------CCeEEEEECC
Confidence            999999976655532       2567777764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.2e-22  Score=171.95  Aligned_cols=244  Identities=10%  Similarity=0.030  Sum_probs=183.0

Q ss_pred             cEEEEEECCCCCEE-EEeeCCCcEEEeecCCCCCCceeeEEeec---CCCCEEEEEEcCCCCCEEEEEe-----------
Q 021319           22 KVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWDPKHADLIATAS-----------   86 (314)
Q Consensus        22 ~V~~v~~s~~g~~l-~s~~~D~~v~iw~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~-----------   86 (314)
                      .+..++|+|+|+++ ++++.++.|.+||+.+..  .........   |...+..++|+|++ +.+++++           
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceEECCCC-CEEEEEeccccccccccc
Confidence            48899999999765 556678999999987532  222222221   12256788999975 4666665           


Q ss_pred             -CCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319           87 -GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        87 -~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                       .++.|.+||..+++.............++|+|++++++++  ++.+.+||+.+.+.............+.|+|++..++
T Consensus       112 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  189 (337)
T 1pby_B          112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW  189 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred             ccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence             5799999999988877766665566678899999988888  6889999999888776655433223446788887655


Q ss_pred             EEcCCc------------------------eEEEEeCCCCCce-eeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319          166 LTTGNG------------------------TVEVLTYPSLRPL-DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (314)
Q Consensus       166 ~~~~~g------------------------~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~  220 (314)
                      +....+                        .+.+|+....+.. ..+..+...+.+++|+|++++++++  ++.|.+||+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~  267 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence            444322                        4678887766543 2233455678899999999999888  789999999


Q ss_pred             CCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319          221 SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       221 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~  273 (314)
                      .+++.+..+... ..+.+++|+|++++|++++.|+.|.+||+.+++.+..++.
T Consensus       268 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          268 EKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            999887776543 4578899999999999999999999999999998888764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=1e-21  Score=168.40  Aligned_cols=262  Identities=13%  Similarity=0.124  Sum_probs=176.2

Q ss_pred             ccccEEEEEECCCCCEEEEeeCC----CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVD----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      |...+..++|+|||++|++++.+    +.|++|+++..............+......+++  ++..++++...+++|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            56677889999999999999876    899999987532211122233345556777777  433344444468999999


Q ss_pred             eCCCCceeee----EEec-----------CceEEEEEccCCCEEEEEe-CCCcEEEEEccCCeE--------------ee
Q 021319           95 DARSGKCSQQ----AELS-----------GENINITYKPDGTHIAVGN-RDDELTILDVRKFKP--------------IH  144 (314)
Q Consensus        95 d~~~~~~~~~----~~~~-----------~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--------------~~  144 (314)
                      ++........    ....           .....++|+|+|++++++. .++.+.+|++.....              ..
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            9875432211    1111           1225689999999776655 478899998764331              11


Q ss_pred             eeccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCCCCc--eeee---eecccceEEEEECCCCCEEEEeeCC--CeEE
Q 021319          145 RRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRP--LDTV---VAHTAGCYCIAIDPMGRYFAVGSAD--SLVS  216 (314)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~--~~~~---~~~~~~i~~i~~~~~~~~l~t~~~d--g~i~  216 (314)
                      ....+.....++|+|+++.++++. .++.+.+|++...+.  +..+   ..+...+..++|+|+|++|++++.+  +.|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            223345577899999999777666 689999999864432  2222   2233457899999999998776655  8999


Q ss_pred             EeeCC--CcE--EEEEeeecccCeEEEEEccCCcEEEEec-CCceEEEE--ECCCCCeEEEEe--ccCccceeEEc
Q 021319          217 LWDIS--EML--CVRTFTKLEWPVRTISFSHTGDYIASAS-EDLFIDIS--NVHTGRTVHQIP--CRAAMNSVEWN  283 (314)
Q Consensus       217 vwd~~--~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~s-~d~~v~v~--~~~~~~~~~~~~--~~~~i~~v~~~  283 (314)
                      +|++.  ++.  .+..+.. ...+..++|+|+|++|++++ .++.+.+|  |..+++......  ....+.||+|.
T Consensus       286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            99995  333  4444444 45678899999999988887 56889996  455676543321  23467888885

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=7.3e-23  Score=190.67  Aligned_cols=262  Identities=16%  Similarity=0.163  Sum_probs=186.6

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-----------------CCEEEEEEcCCCCCEEEEE
Q 021319           23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-----------------DSVDQLCWDPKHADLIATA   85 (314)
Q Consensus        23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-----------------~~v~~l~~~~~~~~~l~s~   85 (314)
                      +..+.|+  |+.+++++.|+ | +||+.+.... ..  .+..|.                 ..|.+++|+|+ +.++++ 
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~-~~--~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-   98 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSA-QT--TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-   98 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC--------C--EEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEe-eE--EeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-
Confidence            4557787  77788888888 8 9998764320 01  122222                 56999999998 544444 


Q ss_pred             eCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccC-----CeEeeeeccCcc---------
Q 021319           86 SGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK-----FKPIHRRKFGYE---------  151 (314)
Q Consensus        86 ~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~---------  151 (314)
                       .|+.+++||+.+++.............++|+|||+.|+.+ .++.|.+||+.+     .+..........         
T Consensus        99 -~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A           99 -TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             -ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred             -ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence             4599999999988765544444455568999999999985 679999999987     655433222222         


Q ss_pred             ------eeeEEeccCCCeEEEEc---------------------------------CCceEEEEeCCCCCceeee--eec
Q 021319          152 ------VNEIAWNMTGEMFFLTT---------------------------------GNGTVEVLTYPSLRPLDTV--VAH  190 (314)
Q Consensus       152 ------~~~~~~~~~~~~~~~~~---------------------------------~~g~~~~~~~~~~~~~~~~--~~~  190 (314)
                            +..+.|+|+++.++++.                                 .+..+.+|+....+.....  ..|
T Consensus       177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  256 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK  256 (706)
T ss_dssp             GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred             hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence                  47899999999998886                                 4567888988766543322  245


Q ss_pred             ccceEEEEECCCCCEEEEeeCCC-----eEEEeeCCCcEEEEEee-e-ccc---CeEEEEEcc--CCcEEEEecCCceEE
Q 021319          191 TAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEMLCVRTFT-K-LEW---PVRTISFSH--TGDYIASASEDLFID  258 (314)
Q Consensus       191 ~~~i~~i~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~-~-~~~---~v~~~~~sp--~~~~l~s~s~d~~v~  258 (314)
                      ...+.+++|+|||+.|++++.++     .|.+||+.++.....+. . ...   .+..++|+|  +|++|++++.|+.++
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~  336 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH  336 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence            66789999999999999887775     89999999883333322 2 111   246789999  999999999999999


Q ss_pred             EEECC-CCCeEEEEec-cCccce-eEEcCCCCeeEEEecC
Q 021319          259 ISNVH-TGRTVHQIPC-RAAMNS-VEWNPKYNLLAYAGDD  295 (314)
Q Consensus       259 v~~~~-~~~~~~~~~~-~~~i~~-v~~~~~~~~la~~~~d  295 (314)
                      +|.+. +++.+..+.. ...+.+ ++|+|+++.|++++.+
T Consensus       337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            99876 6666666543 345666 7999999988777655

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=5.2e-22  Score=169.30  Aligned_cols=248  Identities=13%  Similarity=0.185  Sum_probs=170.8

Q ss_pred             ecccccEEEEEECCCCCEEEEeeC---CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe-CCCcEE
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-GDKTVR   92 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~---D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~D~~v~   92 (314)
                      ..+...+..++|+|||+ |++++.   ++.|++|+++...  ......+..+...+..++|+|++ ++|++++ .+++|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~--~~~~~~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT--AHKLNTVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAE  111 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE--EEEEEEEEEESCCCSEEEEETTT-TEEEEEETTTTEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc--EEEeeeeecCCCCCEEEEECCCC-CEEEEEeCCCCEEE
Confidence            34556788899999999 555543   6899999996422  11222334567788899999986 5566666 789999


Q ss_pred             EEeCC-CCceeee--EEecC----------ceEEEEEccCCCEEEEEeCCCcEEEEEcc-CCeEe--ee--eccCcceee
Q 021319           93 LWDAR-SGKCSQQ--AELSG----------ENINITYKPDGTHIAVGNRDDELTILDVR-KFKPI--HR--RKFGYEVNE  154 (314)
Q Consensus        93 iwd~~-~~~~~~~--~~~~~----------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~--~~--~~~~~~~~~  154 (314)
                      +||+. ++.....  ....+          ....++|+|+|+.+++...++.+.+||+. ..+..  ..  ...+.....
T Consensus       112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            99985 3333222  21111          24568999999966666678889999998 33222  11  122335678


Q ss_pred             EEeccCCCeEEE-EcCCceEEEEeCCC--CC--ceeeeeecc------cceEEEEECCCCCEE-EEeeCCCeEEEeeCC-
Q 021319          155 IAWNMTGEMFFL-TTGNGTVEVLTYPS--LR--PLDTVVAHT------AGCYCIAIDPMGRYF-AVGSADSLVSLWDIS-  221 (314)
Q Consensus       155 ~~~~~~~~~~~~-~~~~g~~~~~~~~~--~~--~~~~~~~~~------~~i~~i~~~~~~~~l-~t~~~dg~i~vwd~~-  221 (314)
                      ++|+|+++.+++ ...++.+.+|++..  .+  .+..+....      ..+..++|+|+|++| ++...++.|.+||+. 
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            999999996555 56788999998764  22  112222222      347889999999987 455668999999997 


Q ss_pred             --CcEEEEEeeecccCeEEEEEccCCcEEEEecCC-ceEEEE--ECCCCCeE
Q 021319          222 --EMLCVRTFTKLEWPVRTISFSHTGDYIASASED-LFIDIS--NVHTGRTV  268 (314)
Q Consensus       222 --~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-~~v~v~--~~~~~~~~  268 (314)
                        ....+..+..+...+..++|+|+|++|++++.+ +.+.+|  |..+|+..
T Consensus       272 ~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          272 DGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             GGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence              335556665555567899999999998888765 899999  55567655

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=9.4e-21  Score=162.40  Aligned_cols=268  Identities=12%  Similarity=0.119  Sum_probs=178.5

Q ss_pred             CCEEEEe----eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC----CcEEEEeCCC--Cce
Q 021319           32 GTKLASG----SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KTVRLWDARS--GKC  101 (314)
Q Consensus        32 g~~l~s~----~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D----~~v~iwd~~~--~~~  101 (314)
                      ..+++.|    +.++.|.+|.++.... ........ +...+..++|+|++ ++|++++.+    +.|.+|++..  +..
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g-~~~~~~~~-~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~   89 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETG-ESLPLSDA-EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTL   89 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTC-CEEEEEEE-ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCC-CEEEeecc-cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence            3445555    3467899998865332 22222222 66777889999985 677777775    8999998765  443


Q ss_pred             eeeEEe---cCceEEEEEccCCCEEEEEe-CCCcEEEEEccCCeEeeee----c-----------cCcceeeEEeccCCC
Q 021319          102 SQQAEL---SGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRR----K-----------FGYEVNEIAWNMTGE  162 (314)
Q Consensus       102 ~~~~~~---~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~----~-----------~~~~~~~~~~~~~~~  162 (314)
                      ......   ......+++  +++.|+++. .++.+.+|++.....+...    .           ....+..++|+|+++
T Consensus        90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~  167 (361)
T 3scy_A           90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK  167 (361)
T ss_dssp             EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred             EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence            332222   234455666  888777766 5788999998653322111    0           112246799999999


Q ss_pred             eEEEE-cCCceEEEEeCCCCCc------e-------eeeeecccceEEEEECCCCCEEEEee-CCCeEEEeeCCCcEE--
Q 021319          163 MFFLT-TGNGTVEVLTYPSLRP------L-------DTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLC--  225 (314)
Q Consensus       163 ~~~~~-~~~g~~~~~~~~~~~~------~-------~~~~~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~~~--  225 (314)
                      .++++ ..++.+.+|++.....      +       .....+...+..++|+|+|+++++++ .++.|.+||+.++..  
T Consensus       168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~  247 (361)
T 3scy_A          168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE  247 (361)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred             EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence            66554 4688999998764331      1       11123445688999999999887776 689999999986643  


Q ss_pred             EEEeee---cccCeEEEEEccCCcEEEEecC--CceEEEEECC--CCC--eEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319          226 VRTFTK---LEWPVRTISFSHTGDYIASASE--DLFIDISNVH--TGR--TVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       226 ~~~~~~---~~~~v~~~~~sp~~~~l~s~s~--d~~v~v~~~~--~~~--~~~~~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      +..+..   +......++|+|+|++|+++..  ++.|.+|++.  +++  .+..+.....++.++|+|++++|++++.+.
T Consensus       248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~  327 (361)
T 3scy_A          248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT  327 (361)
T ss_dssp             EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT
T ss_pred             eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC
Confidence            333322   2234679999999999876665  4889999985  455  344444445788999999999998888542


Q ss_pred             cccccccceEEeccc
Q 021319          297 NKYQADEGVFRIYGF  311 (314)
Q Consensus       297 ~~~~~~~~~~~~~~~  311 (314)
                             +.++||.+
T Consensus       328 -------~~v~v~~~  335 (361)
T 3scy_A          328 -------NVIQIFER  335 (361)
T ss_dssp             -------TEEEEEEE
T ss_pred             -------CCEEEEEE
Confidence                   46666544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=6.7e-23  Score=191.38  Aligned_cols=277  Identities=10%  Similarity=0.055  Sum_probs=188.5

Q ss_pred             eeeecccc---cEEEEEECCCCCEEEEeeCC---------CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCE
Q 021319           14 REYTGHKK---KVHSVAWNCTGTKLASGSVD---------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADL   81 (314)
Q Consensus        14 ~~~~gH~~---~V~~v~~s~~g~~l~s~~~D---------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~   81 (314)
                      +.+.+|..   .|.+++|||||++|++++.+         +.+.+||++....  .......+|...+..++|+|++ +.
T Consensus        51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG-~~  127 (723)
T 1xfd_A           51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKG-QQ  127 (723)
T ss_dssp             EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--EECCCTTCCSCCCSBCCBCSST-TC
T ss_pred             EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce--EeccCCccccccccccEECCCC-CE
Confidence            34455554   49999999999999999875         6788999976432  1111123455558889999986 56


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeeEEec-C------------------ceEEEEEccCCCEEEEEeCCC------------
Q 021319           82 IATASGDKTVRLWDARSGKCSQQAELS-G------------------ENINITYKPDGTHIAVGNRDD------------  130 (314)
Q Consensus        82 l~s~~~D~~v~iwd~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~l~~~~~d~------------  130 (314)
                      |+.++. +.|++||..+++........ .                  ....++|+|||+.|+.++.++            
T Consensus       128 la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~  206 (723)
T 1xfd_A          128 LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT  206 (723)
T ss_dssp             EEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred             EEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC
Confidence            777765 79999999888765443321 1                  125799999999999887543            


Q ss_pred             ----------------------cEEEEEccCCeEeeeecc-------CcceeeEEeccCCCeEEEEcC----CceEEEEe
Q 021319          131 ----------------------ELTILDVRKFKPIHRRKF-------GYEVNEIAWNMTGEMFFLTTG----NGTVEVLT  177 (314)
Q Consensus       131 ----------------------~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~  177 (314)
                                            .+.+||+.+.+.......       ...+..++|+|+++.+++...    +..+.+|+
T Consensus       207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  286 (723)
T 1xfd_A          207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD  286 (723)
T ss_dssp             SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred             CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence                                  688999887654333322       345778999999998766542    35788888


Q ss_pred             CCCCCceeeeee-cccce----EEEEECCCCCEEEE--eeCCC------eEEEee-CCCcE--EEEEeeecccCeEE-EE
Q 021319          178 YPSLRPLDTVVA-HTAGC----YCIAIDPMGRYFAV--GSADS------LVSLWD-ISEML--CVRTFTKLEWPVRT-IS  240 (314)
Q Consensus       178 ~~~~~~~~~~~~-~~~~i----~~i~~~~~~~~l~t--~~~dg------~i~vwd-~~~~~--~~~~~~~~~~~v~~-~~  240 (314)
                      ..+.+....+.. +...+    ..++|+|||+.|+.  +..++      .|.+|| ...+.  +...+......+.. ++
T Consensus       287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~  366 (723)
T 1xfd_A          287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA  366 (723)
T ss_dssp             TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred             CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence            877665544433 23333    37899999997664  45667      566777 33333  14445444555655 69


Q ss_pred             EccCCcEEEEecCC---ceEEEEECCCCC--eEEEEe----ccCccceeEEcCCCCeeEEEec
Q 021319          241 FSHTGDYIASASED---LFIDISNVHTGR--TVHQIP----CRAAMNSVEWNPKYNLLAYAGD  294 (314)
Q Consensus       241 ~sp~~~~l~s~s~d---~~v~v~~~~~~~--~~~~~~----~~~~i~~v~~~~~~~~la~~~~  294 (314)
                      |+|+|++|+..+.+   +.+++|++....  ....+.    +...+..++|+|+++.|+....
T Consensus       367 ~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             EcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            99999999766554   789999986432  233333    2456889999999998876543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=1.3e-21  Score=166.34  Aligned_cols=225  Identities=11%  Similarity=0.071  Sum_probs=173.1

Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC--ceEEEEEccCCCEEEE-EeCCCcEEEEEccCCeEeeeeccC
Q 021319           73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAV-GNRDDELTILDVRKFKPIHRRKFG  149 (314)
Q Consensus        73 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~  149 (314)
                      ++.+. +.++++++.+++|++||..+++.........  ....++++|+++.+++ ...++.|.+||+.+.+.+......
T Consensus         6 ~~~~~-~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B            6 ALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             CCCTT-CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             cccCC-CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence            34544 5688999999999999999998877776655  5678999999987654 456889999999988877665542


Q ss_pred             -------cceeeEEeccCCCeEEEEcCC------------ceEEEEeCCCCCc---eeeeeecccceEEEEECCCCCEEE
Q 021319          150 -------YEVNEIAWNMTGEMFFLTTGN------------GTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFA  207 (314)
Q Consensus       150 -------~~~~~~~~~~~~~~~~~~~~~------------g~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~  207 (314)
                             ..+..++|+|+++.++++..+            +.+.+|+....+.   +... .+...+.+++|+|+|+ ++
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LY  162 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EE
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EE
Confidence                   236789999999999888754            8999999876332   2222 2344688999999999 55


Q ss_pred             EeeCCCeEEEeeCCCcEEEEEeeecc------------------------------------------------------
Q 021319          208 VGSADSLVSLWDISEMLCVRTFTKLE------------------------------------------------------  233 (314)
Q Consensus       208 t~~~dg~i~vwd~~~~~~~~~~~~~~------------------------------------------------------  233 (314)
                      +++.  .|.+||+.+++.+..+....                                                      
T Consensus       163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  240 (349)
T 1jmx_B          163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  240 (349)
T ss_dssp             EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence            5543  39999998887766554221                                                      


Q ss_pred             --------------cCeEEEEEcc-CCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcc
Q 021319          234 --------------WPVRTISFSH-TGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK  298 (314)
Q Consensus       234 --------------~~v~~~~~sp-~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~  298 (314)
                                    ..+..++|+| ++++++++  ++.|.+||..+++.+..+.....+.+++|+|+++.|++++.+   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---  315 (349)
T 1jmx_B          241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF---  315 (349)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS---
T ss_pred             cCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC---
Confidence                          1345677889 99999988  889999999999988888776778999999999988886654   


Q ss_pred             cccccceEEecccc
Q 021319          299 YQADEGVFRIYGFE  312 (314)
Q Consensus       299 ~~~~~~~~~~~~~~  312 (314)
                           +.+++|+.+
T Consensus       316 -----~~v~v~d~~  324 (349)
T 1jmx_B          316 -----NDLAVFNPD  324 (349)
T ss_dssp             -----SEEEEEETT
T ss_pred             -----CeEEEEecc
Confidence                 567788764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=1.3e-21  Score=169.14  Aligned_cols=277  Identities=11%  Similarity=0.066  Sum_probs=184.8

Q ss_pred             ceeeecccccEEE-----EEECCCCCEEEEeeC-CCc--EEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEE
Q 021319           13 SREYTGHKKKVHS-----VAWNCTGTKLASGSV-DQT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT   84 (314)
Q Consensus        13 ~~~~~gH~~~V~~-----v~~s~~g~~l~s~~~-D~~--v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s   84 (314)
                      .+.++.|......     .+|||||++|+.++. ++.  |.+||++..   . ......++...+..+.|+|++ ..|+.
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~-~~~lt~~~~~~~~~~~~spdg-~~l~~   97 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---V-ATQLTEGRGDNTFGGFLSPDD-DALFY   97 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC---E-EEECCCSSCBCSSSCEECTTS-SEEEE
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC---c-eEEeeeCCCCCccceEEcCCC-CEEEE
Confidence            3456667766666     889999999999887 775  666666542   2 222234555555567899985 67888


Q ss_pred             EeCCCcEEEEeCCCCceeeeEEecCceE---EEEEccCCCEEEEEe----------------------CCCcEEEEEccC
Q 021319           85 ASGDKTVRLWDARSGKCSQQAELSGENI---NITYKPDGTHIAVGN----------------------RDDELTILDVRK  139 (314)
Q Consensus        85 ~~~D~~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~----------------------~d~~i~i~d~~~  139 (314)
                      ++.++.|.+||+.+++............   ...++|+++.++...                      .+..|.+||+.+
T Consensus        98 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  177 (388)
T 3pe7_A           98 VKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT  177 (388)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred             EeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence            8899999999999988665555444332   234589999887432                      335789999988


Q ss_pred             CeEeeeeccCcceeeEEecc-CCCeEEEEcCC------ceEEEEeCCCCCceeeeeecc--cceEEEEECCCCCEEEEee
Q 021319          140 FKPIHRRKFGYEVNEIAWNM-TGEMFFLTTGN------GTVEVLTYPSLRPLDTVVAHT--AGCYCIAIDPMGRYFAVGS  210 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~t~~  210 (314)
                      .+..........+..+.|+| ++..++.....      ..+.+++....+. ..+..+.  ..+...+|+|||+.|+..+
T Consensus       178 g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          178 GESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             CCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             CceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEe
Confidence            76544444455678899999 99888776543      3677777654433 2333333  3477889999999775433


Q ss_pred             C-CC----eEEEeeCCCcEEE--EEeeecc---cCeEEEEEccCCcEEEEe---------cCCceEEEEECCCCCeEEEE
Q 021319          211 A-DS----LVSLWDISEMLCV--RTFTKLE---WPVRTISFSHTGDYIASA---------SEDLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       211 ~-dg----~i~vwd~~~~~~~--~~~~~~~---~~v~~~~~sp~~~~l~s~---------s~d~~v~v~~~~~~~~~~~~  271 (314)
                      . ++    .|.+||+.+++..  ..+..+.   .....++|+|||+.|+..         ..+..|.+||..+++.....
T Consensus       257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  336 (388)
T 3pe7_A          257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA  336 (388)
T ss_dssp             EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE
T ss_pred             cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence            3 22    3999999887643  2222210   011224799999988854         45668999999887654333


Q ss_pred             eccC-----------ccceeEEcCCCCeeEEEecC
Q 021319          272 PCRA-----------AMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       272 ~~~~-----------~i~~v~~~~~~~~la~~~~d  295 (314)
                      .+..           .+.+++|+|+++.|++++..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~  371 (388)
T 3pe7_A          337 RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV  371 (388)
T ss_dssp             ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             cccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence            3333           47899999999999888754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=2.5e-22  Score=187.44  Aligned_cols=262  Identities=14%  Similarity=0.114  Sum_probs=178.7

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC---CEEEEEEcCCCCCEEEEEeC---------CCcEE
Q 021319           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASG---------DKTVR   92 (314)
Q Consensus        25 ~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~---------D~~v~   92 (314)
                      +++|+|||+++++ +.|+.|++||++...    ....+.+|..   .+..++|+|++ +.|++++.         |+.|+
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQ----SYTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCC----EEEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCc----EEEEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEE
Confidence            7899999965554 469999999987632    1222333433   48899999985 57777765         78999


Q ss_pred             EEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCc-------------------cee
Q 021319           93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-------------------EVN  153 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------~~~  153 (314)
                      +||+.+++......+......++|+|||+.|+.+. ++.|.+||+.+.+.......+.                   ...
T Consensus        94 ~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           94 IYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             EEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             EEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence            99999887632122334566799999999999885 7899999997765433221111                   114


Q ss_pred             eEEeccCCCeEEEEcCCc----------------------------------eEEEEeCCCCCce--------eeeeecc
Q 021319          154 EIAWNMTGEMFFLTTGNG----------------------------------TVEVLTYPSLRPL--------DTVVAHT  191 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g----------------------------------~~~~~~~~~~~~~--------~~~~~~~  191 (314)
                      .+.|+|+|+.++++..+.                                  .+.+|+....+..        ..+..|.
T Consensus       173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            799999999998876431                                  6778887665432        1123467


Q ss_pred             cceEEEEECCCCCEEEEeeCC----CeEEEee----CCCcEEEEEe----eecccCeE-----EEEEccCCcEEEE--ec
Q 021319          192 AGCYCIAIDPMGRYFAVGSAD----SLVSLWD----ISEMLCVRTF----TKLEWPVR-----TISFSHTGDYIAS--AS  252 (314)
Q Consensus       192 ~~i~~i~~~~~~~~l~t~~~d----g~i~vwd----~~~~~~~~~~----~~~~~~v~-----~~~~sp~~~~l~s--~s  252 (314)
                      ..+..++|+||++++++....    ..|.+||    ..++++...+    ..+...+.     .++|+|||+.|+.  ..
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  332 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD  332 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence            778999999998877774432    2488899    7777655444    34554555     7899999996554  44


Q ss_pred             CCc--eEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecC
Q 021319          253 EDL--FIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       253 ~d~--~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      .++  .|.+|+..+++ ...+.. ...+..+.++ ++..|++.+.+
T Consensus       333 ~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          333 KDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             TTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred             cCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence            555  56677776666 334432 3457777777 77777777654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.88  E-value=5.7e-20  Score=157.95  Aligned_cols=268  Identities=13%  Similarity=0.145  Sum_probs=177.8

Q ss_pred             EEEeeC--CCcEEEeecCCCCCCceeeEEe-e-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC-CCceeeeEEec-
Q 021319           35 LASGSV--DQTARVWHIEPHGHGKVKDIEL-R-GHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGKCSQQAELS-  108 (314)
Q Consensus        35 l~s~~~--D~~v~iw~~~~~~~~~~~~~~~-~-~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~~~~~~~~-  108 (314)
                      ++.|++  ++.|.+|+++... +....... . +....+..++|+|++ ++|++++.+ .|.+||+. +++........ 
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~-g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~   81 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEK-LTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTT-TEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEccCCCcEEEEEEECCC-CCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence            444544  2568887765422 22221111 1 233467789999985 577788877 99999987 77654433221 


Q ss_pred             -CceEEEEEccCCCE--EEEEe-------------CCCcEEEEEccC-CeEeeeec-----cCcceeeEEeccCCCeEEE
Q 021319          109 -GENINITYKPDGTH--IAVGN-------------RDDELTILDVRK-FKPIHRRK-----FGYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus       109 -~~~~~~~~~~~~~~--l~~~~-------------~d~~i~i~d~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  166 (314)
                       +....++++|+|+.  ++++.             .++.+.+|++.. .+......     ....+..++|+|+++.+++
T Consensus        82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence             33345788999995  44442             688999999863 43322222     3456888999999998776


Q ss_pred             Ec-CCceEEEEeCC-CCCc--eeeee--ecccceEEEEECCCCCEEEEeeC-CCeEEEeeCC--CcEEE---EEeeec--
Q 021319          167 TT-GNGTVEVLTYP-SLRP--LDTVV--AHTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDIS--EMLCV---RTFTKL--  232 (314)
Q Consensus       167 ~~-~~g~~~~~~~~-~~~~--~~~~~--~~~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~--~~~~~---~~~~~~--  232 (314)
                      +. .++.+.+|+.. ..+.  +..+.  .|...+..++|+|+|+++++++. ++.|.+|++.  +++..   +.+...  
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  241 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence            64 56899999987 4432  22222  23567899999999999887765 6899999865  44432   222211  


Q ss_pred             -----cc------CeEEEE-EccCCcEEEEecCCc------eEEEEECC-CCCeEEE---Ee-ccCccceeEEcC---CC
Q 021319          233 -----EW------PVRTIS-FSHTGDYIASASEDL------FIDISNVH-TGRTVHQ---IP-CRAAMNSVEWNP---KY  286 (314)
Q Consensus       233 -----~~------~v~~~~-~sp~~~~l~s~s~d~------~v~v~~~~-~~~~~~~---~~-~~~~i~~v~~~~---~~  286 (314)
                           ..      .+..++ |+|||++|++++.+.      .|.+|++. +++....   .. .......++|+|   ++
T Consensus       242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg  321 (365)
T 1jof_A          242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence                 11      478899 999999988776432      89999986 5664431   32 234678999999   89


Q ss_pred             CeeEEEecCCcccccccceEEecccc
Q 021319          287 NLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       287 ~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ++|++++.+       +++++||.++
T Consensus       322 ~~l~v~~~~-------~~~v~v~~~~  340 (365)
T 1jof_A          322 EWMAITDDQ-------EGWLEIYRWK  340 (365)
T ss_dssp             TEEEEECSS-------SCEEEEEEEE
T ss_pred             CEEEEEEcC-------CCeEEEEEEc
Confidence            999988865       2678888764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=4.9e-21  Score=168.15  Aligned_cols=202  Identities=13%  Similarity=0.123  Sum_probs=144.0

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCC-------C-Ccee---eEEeecCCCCEEEEEEcCCCCCEEE----E
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-------H-GKVK---DIELRGHADSVDQLCWDPKHADLIA----T   84 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~-------~-~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~----s   84 (314)
                      ...++.+++++++.++++++.|+ ++||+.....       . ....   ......|...|.+++|+|++ ++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN-LTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-CEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-CEEEEEEec
Confidence            44689999999999999999888 8998753110       0 0100   00112466789999999985 5777    8


Q ss_pred             EeCCCcEEEEeCCCC--------ceeeeEE----ecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEeeeeccCcc
Q 021319           85 ASGDKTVRLWDARSG--------KCSQQAE----LSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYE  151 (314)
Q Consensus        85 ~~~D~~v~iwd~~~~--------~~~~~~~----~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  151 (314)
                      ++.|++|++||+.++        +......    +...+..++|+|+ +.+|++++.|+.+++||+++...         
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~---------  184 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK---------  184 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE---------
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc---------
Confidence            899999999998654        1111111    2345667888887 77888888888888888765421         


Q ss_pred             eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee
Q 021319          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~  231 (314)
                                                      .....+|...+++++|+|+|++|++|+.||.|++||++ +.....+..
T Consensus       185 --------------------------------~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~  231 (434)
T 2oit_A          185 --------------------------------VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPC  231 (434)
T ss_dssp             --------------------------------EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECC
T ss_pred             --------------------------------eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccC
Confidence                                            11223477789999999999999999999999999998 444444443


Q ss_pred             c-------ccCeEEEEEccCCcEEEEe-cCCc------eEEEEECCCC
Q 021319          232 L-------EWPVRTISFSHTGDYIASA-SEDL------FIDISNVHTG  265 (314)
Q Consensus       232 ~-------~~~v~~~~~sp~~~~l~s~-s~d~------~v~v~~~~~~  265 (314)
                      +       ...+.+++|++++.++++. +.||      .+++|++.+.
T Consensus       232 ~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          232 PPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            3       2378999999999888653 3443      3899998764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=4.2e-21  Score=168.58  Aligned_cols=215  Identities=13%  Similarity=0.139  Sum_probs=157.7

Q ss_pred             CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe----------------EeeeeccCcce
Q 021319           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK----------------PIHRRKFGYEV  152 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~  152 (314)
                      +.+++|+....     . .......+++++++.++++++.++ +.+|+.....                +.........+
T Consensus        23 ~~vri~~~~~~-----~-~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   95 (434)
T 2oit_A           23 KKVRIFDSPEE-----L-PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPI   95 (434)
T ss_dssp             CEEECSCCCSS-----C-CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCE
T ss_pred             eeEEecCCccc-----c-CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcc
Confidence            46788764311     0 122344577889999999998887 8887753210                11122334568


Q ss_pred             eeEEeccCCCeEE----EEcCCceEEEEeCCCC--------Cc---eeeeeecccceEEEEECCC-CCEEEEeeCCCeEE
Q 021319          153 NEIAWNMTGEMFF----LTTGNGTVEVLTYPSL--------RP---LDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVS  216 (314)
Q Consensus       153 ~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~--------~~---~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~  216 (314)
                      .+++|+++++.++    +++.++.+++|+....        ++   +..+.+|...|++++|+|+ +.+|++++.||+|+
T Consensus        96 ~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~  175 (434)
T 2oit_A           96 HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIA  175 (434)
T ss_dssp             EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEE
Confidence            9999999999999    5677999999987543        22   3345568999999999998 88999999999999


Q ss_pred             EeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec--------cCccceeEEcCCCCe
Q 021319          217 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--------RAAMNSVEWNPKYNL  288 (314)
Q Consensus       217 vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~--------~~~i~~v~~~~~~~~  288 (314)
                      +||++++..+.....|...|.+++|+|+|++|++|+.|+.|++||.. ++....+..        ...|.+++|++++.+
T Consensus       176 iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~  254 (434)
T 2oit_A          176 VLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF  254 (434)
T ss_dssp             EEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred             EEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence            99999887776666788899999999999999999999999999998 555555432        127899999998887


Q ss_pred             eEEEe-cCCcccccccceEEeccccC
Q 021319          289 LAYAG-DDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       289 la~~~-~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +++.+ .|+. . -....+++|++.+
T Consensus       255 l~~~~~~dg~-~-~~~~~v~i~~l~~  278 (434)
T 2oit_A          255 AIVYAAADGT-L-ETSPDVVMALLPK  278 (434)
T ss_dssp             EEEEEETTCC-S-SSCCEEEEEECCC
T ss_pred             EEEEccCCCc-c-CCCCceEEEEecc
Confidence            75443 3321 1 0113478888753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=6.7e-21  Score=173.65  Aligned_cols=231  Identities=13%  Similarity=0.024  Sum_probs=165.0

Q ss_pred             CCCEEEEEEcCCCCCEEEEEeC-CCcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeC---CCcEEEEEccC-
Q 021319           66 ADSVDQLCWDPKHADLIATASG-DKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNR---DDELTILDVRK-  139 (314)
Q Consensus        66 ~~~v~~l~~~~~~~~~l~s~~~-D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~-  139 (314)
                      ..+|..++++|++ +.|++++. |++++||++..+...+..... .....+.|+|| +.++++..   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCC-CeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            5579999999985 57777776 999999998766654443333 24457889999 77777765   45556665433 


Q ss_pred             -CeEeeeeccCcceeeEEeccCCCe-EEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC----C
Q 021319          140 -FKPIHRRKFGYEVNEIAWNMTGEM-FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD----S  213 (314)
Q Consensus       140 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d----g  213 (314)
                       ................+|+|+++. +++....+...+|++.+.+... +..+..  .+++|+|||+++|.++.+    +
T Consensus        99 ~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-l~~~~~--~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A           99 RPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-LARLPG--FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             STTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-EEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred             CCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-eecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence             211112222333446688898864 4444555666699886655433 333333  789999999999988777    7


Q ss_pred             eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCc--eEEEEECCCCCeEEEEe-ccCccceeE--------E
Q 021319          214 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL--FIDISNVHTGRTVHQIP-CRAAMNSVE--------W  282 (314)
Q Consensus       214 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~--~v~v~~~~~~~~~~~~~-~~~~i~~v~--------~  282 (314)
                      .|.+||+.+++.. .+..+...+..++|||||++|++++.++  .|++||+.+++.. .+. +...+.+++        |
T Consensus       176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  253 (582)
T 3o4h_A          176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGY  253 (582)
T ss_dssp             EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEE
T ss_pred             EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeE
Confidence            8999999877644 5667777889999999999999888888  8999999988876 433 344677788        9


Q ss_pred             cCCCCeeEEEecCCcccccccceEEeccc
Q 021319          283 NPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       283 ~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      +|++.++++++.|        |+++||.+
T Consensus       254 spdg~~~~~~~~~--------g~~~l~~~  274 (582)
T 3o4h_A          254 LPDGRLAVVARRE--------GRSAVFID  274 (582)
T ss_dssp             CTTSCEEEEEEET--------TEEEEEET
T ss_pred             cCCCcEEEEEEcC--------CcEEEEEE
Confidence            9999888888866        56777754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.86  E-value=7.8e-20  Score=158.21  Aligned_cols=264  Identities=9%  Similarity=0.018  Sum_probs=172.7

Q ss_pred             cEEEEEECCCCCEEEEeeCC---CcEEEeecCCCCCCceeeEEeecCCCC-EEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           22 KVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D---~~v~iw~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      .+.+++|||||++|+....+   ..|.+|+++..   ..  ..+..+... ...+.|+|++ +.|+.++.++.|.+||+.
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~---~~--~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ---QA--VQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT---EE--EECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETT
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCC---cE--EEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECC
Confidence            37788999999998876543   36777776542   22  123333333 3337899985 688888888899999998


Q ss_pred             CCceeeeEEecCceE----E----------------EEEccCCCEEEEE-----eCCCcEEEEEccCCeEeeeeccCcce
Q 021319           98 SGKCSQQAELSGENI----N----------------ITYKPDGTHIAVG-----NRDDELTILDVRKFKPIHRRKFGYEV  152 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~  152 (314)
                      +++............    .                ..++|+++.++..     ..+..|.+||+.+.+..........+
T Consensus       111 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~  190 (396)
T 3c5m_A          111 TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWL  190 (396)
T ss_dssp             TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCE
T ss_pred             CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCccc
Confidence            887654443222211    1                2346666665543     34567899999876654444445567


Q ss_pred             eeEEecc-CCCeEEEEcCC------ceEEEEeCCCCCceeeeeec--ccceEEEEECCCCCEEEEeeCC-----CeEEEe
Q 021319          153 NEIAWNM-TGEMFFLTTGN------GTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDPMGRYFAVGSAD-----SLVSLW  218 (314)
Q Consensus       153 ~~~~~~~-~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~t~~~d-----g~i~vw  218 (314)
                      ..+.|+| ++..++....+      ..+.+++....+.. .+..+  ...+..++|+|+|++|+..+.+     +.|.+|
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  269 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA  269 (396)
T ss_dssp             EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred             ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence            8889999 77766655433      35777777554322 22222  2357889999999987766544     459999


Q ss_pred             eCCCcEEEEEeeecccCeEEEEEcc-CCcEEEEec----------------CCceEEEEECCCCCeEEEEeccC------
Q 021319          219 DISEMLCVRTFTKLEWPVRTISFSH-TGDYIASAS----------------EDLFIDISNVHTGRTVHQIPCRA------  275 (314)
Q Consensus       219 d~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~s----------------~d~~v~v~~~~~~~~~~~~~~~~------  275 (314)
                      |+.+++..... ... ... +.|+| +|+++++++                .+..|.+||..+++......+..      
T Consensus       270 d~~~g~~~~l~-~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~  346 (396)
T 3c5m_A          270 NPETLENEEVM-VMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLD  346 (396)
T ss_dssp             CTTTCCEEEEE-ECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBT
T ss_pred             ECCCCCeEEee-eCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccc
Confidence            99877543322 122 123 88999 999988765                34789999998876533222222      


Q ss_pred             -----ccceeEEcCCCCeeEEEecC
Q 021319          276 -----AMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       276 -----~i~~v~~~~~~~~la~~~~d  295 (314)
                           .+..++|+|+++.|++++.+
T Consensus       347 ~~~~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          347 GDRQITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             TBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             ccccCCCCCceEccCCCeEEEEecC
Confidence                 26778999999999888865

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=4.9e-19  Score=152.11  Aligned_cols=241  Identities=7%  Similarity=0.050  Sum_probs=165.0

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceee-EEeecCCCCEEEEEEcCCCCC-EEEEEe------------
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHAD-LIATAS------------   86 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~-~l~s~~------------   86 (314)
                      ..+..++|+|||++|++++.+ .|.+|+++..  +.... .....+ +.+..++|+|++.. +++++.            
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~--g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSP--TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEET--TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCC--CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            467899999999999999888 9999998621  12211 111111 23455788998643 344553            


Q ss_pred             -CCCcEEEEeCC-CCceeeeEE-----ecCceEEEEEccCCCEEEEEeC-CCcEEEEEcc-CCeEe--eeec---cCcce
Q 021319           87 -GDKTVRLWDAR-SGKCSQQAE-----LSGENINITYKPDGTHIAVGNR-DDELTILDVR-KFKPI--HRRK---FGYEV  152 (314)
Q Consensus        87 -~D~~v~iwd~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~-~~~~~--~~~~---~~~~~  152 (314)
                       .++++++|++. +++......     .......++|+|+|++++++.. ++.|.+||+. +.+..  ....   .+..+
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence             68999999987 465543332     1245667999999998887664 6789999997 55432  2222   14557


Q ss_pred             eeEEeccCCCeEEEEcC-CceEEEEeCCC--CCce---eeee-------eccc------ceEEEE-ECCCCCEEEEeeCC
Q 021319          153 NEIAWNMTGEMFFLTTG-NGTVEVLTYPS--LRPL---DTVV-------AHTA------GCYCIA-IDPMGRYFAVGSAD  212 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~--~~~~---~~~~-------~~~~------~i~~i~-~~~~~~~l~t~~~d  212 (314)
                      ..++|+|+++.++++.. ++.+.+|++..  .+..   ..+.       +|..      .+..++ |+|||++|++++.+
T Consensus       196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            88999999998877664 68999987642  3221   1111       1121      478999 99999998877653


Q ss_pred             C------eEEEeeCC-CcEEEE---EeeecccCeEEEEEcc---CCcEEEEecCC-ceEEEEECCCC
Q 021319          213 S------LVSLWDIS-EMLCVR---TFTKLEWPVRTISFSH---TGDYIASASED-LFIDISNVHTG  265 (314)
Q Consensus       213 g------~i~vwd~~-~~~~~~---~~~~~~~~v~~~~~sp---~~~~l~s~s~d-~~v~v~~~~~~  265 (314)
                      .      .|.+|++. +++...   ....+...+..++|+|   +|++|++++.+ +.|.+|++...
T Consensus       276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            3      89999996 554432   1222344567789999   89999999875 89999998765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=1.6e-20  Score=175.19  Aligned_cols=221  Identities=10%  Similarity=0.125  Sum_probs=158.8

Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCc----eEEEEEccCCCEEEEEeC---------CCcEEEEEc
Q 021319           71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE----NINITYKPDGTHIAVGNR---------DDELTILDV  137 (314)
Q Consensus        71 ~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~---------d~~i~i~d~  137 (314)
                      .+.|+|++ .+++ .+.|++|++||..+++..........    ...++|+|||++|+.++.         ++.+.+||+
T Consensus        20 ~~~~s~dg-~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQ-EYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSS-EEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCC-eEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            67899986 4554 45799999999999887655543322    668999999999998876         689999999


Q ss_pred             cCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee-eecccce-----------------EEEEE
Q 021319          138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGC-----------------YCIAI  199 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~i-----------------~~i~~  199 (314)
                      .+.+.+........+..++|+|+|+.++++. ++.+++|+....+..... .++...+                 .+++|
T Consensus        98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w  176 (719)
T 1z68_A           98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW  176 (719)
T ss_dssp             TTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred             CCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence            8887632223334678899999999988875 679999998766543322 2222212                 48999


Q ss_pred             CCCCCEEEEeeCCC----------------------------------eEEEeeCCCcEEE---E-----EeeecccCeE
Q 021319          200 DPMGRYFAVGSADS----------------------------------LVSLWDISEMLCV---R-----TFTKLEWPVR  237 (314)
Q Consensus       200 ~~~~~~l~t~~~dg----------------------------------~i~vwd~~~~~~~---~-----~~~~~~~~v~  237 (314)
                      +|||++||.++.|.                                  .|++||+.++...   +     .+..+...+.
T Consensus       177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (719)
T 1z68_A          177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS  256 (719)
T ss_dssp             CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence            99999999887652                                  7889999877542   1     1224566789


Q ss_pred             EEEEccCCcEEEEecC--C--ceEEEEE----CCCCCeEEEE-----eccCccc-----eeEEcCCCCeeEEEec
Q 021319          238 TISFSHTGDYIASASE--D--LFIDISN----VHTGRTVHQI-----PCRAAMN-----SVEWNPKYNLLAYAGD  294 (314)
Q Consensus       238 ~~~~sp~~~~l~s~s~--d--~~v~v~~----~~~~~~~~~~-----~~~~~i~-----~v~~~~~~~~la~~~~  294 (314)
                      .++||||++++++...  +  ..|.+||    ..+++....+     .+...+.     .++|+|+++.|+....
T Consensus       257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  331 (719)
T 1z68_A          257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS  331 (719)
T ss_dssp             EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred             EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence            9999999988887442  2  4588899    7776544322     2344566     8999999997776433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=3.2e-19  Score=164.92  Aligned_cols=279  Identities=8%  Similarity=-0.052  Sum_probs=183.7

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEe--eCCCcEEEeecCCCCCCceeeEEeecCCCCEE---------EEEEc--CC
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASG--SVDQTARVWHIEPHGHGKVKDIELRGHADSVD---------QLCWD--PK   77 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~--~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~--~~   77 (314)
                      +..+.+.+|...|..++|++++-++++.  +.++..+||.....  +.  ...+..|...+.         ...|+  |+
T Consensus        14 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD   89 (662)
T 3azo_A           14 IDAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GA--EESALPAPWNVRNRVFEYSGFPWAGVPRPA   89 (662)
T ss_dssp             CCHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SC--EEESSCTTCCBCCCGGGTCCCCEEEECCSS
T ss_pred             CCHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CC--cceeCCCCccccccccccCCccceeeeecC
Confidence            3455678899999999999988778887  66889999987432  22  224555655555         55565  88


Q ss_pred             CCC-EEEEEeCCCcEEEEeCC--C-CceeeeEEe-----cCceEEEEEccCCCEEEEEeCC----------CcEEEEEcc
Q 021319           78 HAD-LIATASGDKTVRLWDAR--S-GKCSQQAEL-----SGENINITYKPDGTHIAVGNRD----------DELTILDVR  138 (314)
Q Consensus        78 ~~~-~l~s~~~D~~v~iwd~~--~-~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d----------~~i~i~d~~  138 (314)
                      +.. ++++...+..|.+++..  . +........     ......++|+|||+.|+.++.+          ..|.+||+.
T Consensus        90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~  169 (662)
T 3azo_A           90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD  169 (662)
T ss_dssp             SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred             CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence            765 44444446677777775  3 443222221     2234578999999999988776          479999987


Q ss_pred             C------CeEeeee-ccCcceeeEEeccCCCeEEEEcCC--------ceEEEEeCC-CC---CceeeeeecccceEEEEE
Q 021319          139 K------FKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGN--------GTVEVLTYP-SL---RPLDTVVAHTAGCYCIAI  199 (314)
Q Consensus       139 ~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~-~~---~~~~~~~~~~~~i~~i~~  199 (314)
                      .      .+...-. .....+..++|+|+|+.+++...+        ..+++|+.. +.   +.......|...+..++|
T Consensus       170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~  249 (662)
T 3azo_A          170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW  249 (662)
T ss_dssp             STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred             CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence            7      4433222 233456778999999998876633        478899887 34   222233345678999999


Q ss_pred             CCCCCEEEEeeCCC--eEEEeeCCCcEEEEEeeecccC--------eEEEEEccCCcEEEEecCCceEEEE--ECCCCCe
Q 021319          200 DPMGRYFAVGSADS--LVSLWDISEMLCVRTFTKLEWP--------VRTISFSHTGDYIASASEDLFIDIS--NVHTGRT  267 (314)
Q Consensus       200 ~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~sp~~~~l~s~s~d~~v~v~--~~~~~~~  267 (314)
                      +|||+++++++.++  .|.+||+.+++.......+...        +..++|+|+++++++++. +.+++|  |..+++ 
T Consensus       250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-  327 (662)
T 3azo_A          250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-  327 (662)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-
T ss_pred             CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-
Confidence            99999888888888  5666676566544332222111        567899999999999999 999999  554444 


Q ss_pred             EEEEec-cCcccee-EEcCCCCeeEEEecC
Q 021319          268 VHQIPC-RAAMNSV-EWNPKYNLLAYAGDD  295 (314)
Q Consensus       268 ~~~~~~-~~~i~~v-~~~~~~~~la~~~~d  295 (314)
                      +..+.. ...+..+ +++++.-.+++++.+
T Consensus       328 ~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~  357 (662)
T 3azo_A          328 LVDAAGPWTEWAATLTVSGTRAVGVAASPR  357 (662)
T ss_dssp             EEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred             EEEecCCCCeEEEEEecCCCEEEEEEcCCC
Confidence            555542 3456666 554433333444433

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=3.2e-17  Score=135.73  Aligned_cols=240  Identities=13%  Similarity=0.144  Sum_probs=172.5

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEe----ecCCCCEEEEEEcCCCCCEEEEEeC-CCcEE
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL----RGHADSVDQLCWDPKHADLIATASG-DKTVR   92 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~~~-D~~v~   92 (314)
                      +|.....+++++++|+++++...++.|++|+.+.   ........    .+|...+..+++.+.++.++++... ++.|+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC---cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            4567899999999999999988899999998752   11211111    1345678899995334556665533 89999


Q ss_pred             EEeCCCCceeeeEEe--cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec---cCcceeeEEeccCCCeEEEE
Q 021319           93 LWDARSGKCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        93 iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  167 (314)
                      +|| .+++.......  ......+++.++++++++...++.|.+||... +.+....   ....+..++++++++.+++.
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            999 45665544422  13466799999999887777788999999643 3333332   22357889999999988877


Q ss_pred             cCCceEEEEeCCCCCceeeeeec--ccceEEEEECCCCCEEEEeeCCC-eEEEeeCCCcEEEEEeeeccc--CeEEEEEc
Q 021319          168 TGNGTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDPMGRYFAVGSADS-LVSLWDISEMLCVRTFTKLEW--PVRTISFS  242 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s  242 (314)
                      ..++.+.+|+... +.+..+..+  ...+..++++++|+++++...++ .|.+||. ++..+..+..+..  .+..++++
T Consensus       182 ~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~  259 (286)
T 1q7f_A          182 NRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  259 (286)
T ss_dssp             GGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             CCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence            8889999998643 334444332  35689999999999888887776 9999996 4555666654332  36789999


Q ss_pred             cCCcEEEEecCCceEEEEECCCC
Q 021319          243 HTGDYIASASEDLFIDISNVHTG  265 (314)
Q Consensus       243 p~~~~l~s~s~d~~v~v~~~~~~  265 (314)
                      |+|+++++ +.|+.|.+|+....
T Consensus       260 ~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          260 DDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             TTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCcEEEE-CCCCeEEEEEcccc
Confidence            99998877 57999999997654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=1.4e-17  Score=142.74  Aligned_cols=263  Identities=11%  Similarity=0.090  Sum_probs=177.8

Q ss_pred             eecccccEEEEEECCCCCEEEEee----------CCCcEEEeecCCCCCCceeeEEeec----CCCCEEEEEEcCCCCCE
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRG----HADSVDQLCWDPKHADL   81 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~----------~D~~v~iw~~~~~~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~   81 (314)
                      +..+..+  .++|+|||+++.++.          .+++|.+||..+..  ....+.+..    +......++++|++. +
T Consensus        47 i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~--~~~~i~~~~~~~~~g~~p~~i~~spdg~-~  121 (361)
T 2oiz_A           47 VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT--FEKEISLPPKRVQGLNYDGLFRQTTDGK-F  121 (361)
T ss_dssp             EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC--EEEEEEECTTBCCBCCCGGGEEECTTSS-E
T ss_pred             ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc--EEEEEEcCccccccCCCcceEEECCCCC-E
Confidence            4444444  899999999988876          36789999986532  222222221    223456789999864 5


Q ss_pred             EEEEe-C-CCcEEEEeCCCCceeee-EEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccC-CeEeee------eccCc
Q 021319           82 IATAS-G-DKTVRLWDARSGKCSQQ-AELSGENINITYKPDG-THIAVGNRDDELTILDVRK-FKPIHR------RKFGY  150 (314)
Q Consensus        82 l~s~~-~-D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~~~~~~------~~~~~  150 (314)
                      |+++. . +++|.+||+.+++.... ..... ...+.+.|++ ..+++.+.|+.+.+++... .+....      .....
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~  200 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD  200 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred             EEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence            55554 3 68999999999877665 43322 2224456665 5667778888888888754 332211      11111


Q ss_pred             ceeeEEeccCCCeEEEEcCCceEEEEeCCCCCce--eeeee------c----ccceEEEEECCCCCEEEEeeC-------
Q 021319          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPL--DTVVA------H----TAGCYCIAIDPMGRYFAVGSA-------  211 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~------~----~~~i~~i~~~~~~~~l~t~~~-------  211 (314)
                      ....+..++++..++....++.+.++++......  ..+..      +    ......++++|+++.++++..       
T Consensus       201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~  280 (361)
T 2oiz_A          201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT  280 (361)
T ss_dssp             SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred             CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence            1122333566667777777889999987543311  11110      0    111223789999887766543       


Q ss_pred             ----CCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCC--CeEEEE-eccCccceeEEcC
Q 021319          212 ----DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG--RTVHQI-PCRAAMNSVEWNP  284 (314)
Q Consensus       212 ----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~--~~~~~~-~~~~~i~~v~~~~  284 (314)
                          .+.|.+||+.+++.+.++..+.  +..++|+|+|++|++++. +.|.+||..++  +.+..+ ......+.++++|
T Consensus       281 ~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          281 HKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             TTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred             ccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence                3489999999999999988776  899999999999998887 99999999999  888886 4566778999999


Q ss_pred             CCC
Q 021319          285 KYN  287 (314)
Q Consensus       285 ~~~  287 (314)
                      +|.
T Consensus       358 ~G~  360 (361)
T 2oiz_A          358 VGG  360 (361)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            985

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=6.3e-19  Score=165.01  Aligned_cols=260  Identities=10%  Similarity=0.130  Sum_probs=171.4

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCC-----EEEEEEcCCCCCEEEEEeCC------
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-----VDQLCWDPKHADLIATASGD------   88 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~~l~s~~~D------   88 (314)
                      .....++.|+|||++++++  |+.|++|++.+..    ....+.+|...     ...++|+|++ +.|+.++.+      
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~   88 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN----SSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRH   88 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCC----EEEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSSS
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCc----eEEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEEE
Confidence            3456789999999999886  9999999997643    12235555532     2447899985 577777776      


Q ss_pred             ---CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCc---------------
Q 021319           89 ---KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY---------------  150 (314)
Q Consensus        89 ---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------  150 (314)
                         +.+.+||+.++++.............+|+|||+.|+.+ .++.|.+||+...+...-...+.               
T Consensus        89 ~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           89 SYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             CEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             ccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence               55669999998865544444567789999999999888 46899999987765432111111               


Q ss_pred             ----ceeeEEeccCCCeEEEEcC-CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC---
Q 021319          151 ----EVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE---  222 (314)
Q Consensus       151 ----~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~---  222 (314)
                          ....+.|+|+|+.++.... ++.+..|.+.......   .+......+.+.+.|..    .....|.+||+.+   
T Consensus       168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~  240 (740)
T 4a5s_A          168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSS  240 (740)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCS
T ss_pred             hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcCc----CCeeEEEEEECCCCCC
Confidence                1134889999998887653 3335555432111000   12334566666666542    1223689999988   


Q ss_pred             c---EEEEEeee------cccCeEEEEEccCCcEEEEec----CCceEEEEECCCCC------eEEEE---eccCccc--
Q 021319          223 M---LCVRTFTK------LEWPVRTISFSHTGDYIASAS----EDLFIDISNVHTGR------TVHQI---PCRAAMN--  278 (314)
Q Consensus       223 ~---~~~~~~~~------~~~~v~~~~~sp~~~~l~s~s----~d~~v~v~~~~~~~------~~~~~---~~~~~i~--  278 (314)
                      +   +.. .+..      +...+..++|+|||+.++...    .+..|.+||+.+++      .+..+   .+...+.  
T Consensus       241 ~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~  319 (740)
T 4a5s_A          241 VTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF  319 (740)
T ss_dssp             SSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred             CCcceEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence            6   333 3322      556688999999999766543    34579999998887      11211   2233333  


Q ss_pred             ---eeEEcCCCCeeE-EEecC
Q 021319          279 ---SVEWNPKYNLLA-YAGDD  295 (314)
Q Consensus       279 ---~v~~~~~~~~la-~~~~d  295 (314)
                         .++|+||++.|+ +.++.
T Consensus       320 ~~~~p~fspDG~~l~~~~s~~  340 (740)
T 4a5s_A          320 RPSEPHFTLDGNSFYKIISNE  340 (740)
T ss_dssp             SCCCCEECTTSSEEEEEEECT
T ss_pred             cCCCceEcCCCCEEEEEEEcC
Confidence               789999999888 66643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.82  E-value=1.7e-17  Score=141.09  Aligned_cols=265  Identities=9%  Similarity=0.081  Sum_probs=175.0

Q ss_pred             ccEEEEEECCCCCEEEEee---------CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC---
Q 021319           21 KKVHSVAWNCTGTKLASGS---------VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---   88 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~---------~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D---   88 (314)
                      ..+..+++  ||++++...         .++.|.+|+++...   ..  .+    ..+..+.|+|++ +.|+..+.+   
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---~~--~l----~~~~~~~~SpDg-~~la~~~~~~~~   82 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA---RR--FI----ENATMPRISPDG-KKIAFMRANEEK   82 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---EE--EE----ESCEEEEECTTS-SEEEEEEEETTT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc---eE--Ec----ccCCCeEECCCC-CEEEEEEeccCC
Confidence            45777888  898877642         36678889886532   11  23    457889999986 466655543   


Q ss_pred             C--cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC---------------------------CcEEEEEccC
Q 021319           89 K--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---------------------------DELTILDVRK  139 (314)
Q Consensus        89 ~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------------------------~~i~i~d~~~  139 (314)
                      +  .|.+||+.+++......... ...+.|+|||+.|+.++.+                           ..|.+||+..
T Consensus        83 ~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~  161 (347)
T 2gop_A           83 KVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES  161 (347)
T ss_dssp             TEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred             CcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence            3  47778888877655544444 6678999999999887632                           4688899987


Q ss_pred             CeEeeeeccCcceeeEEeccCCCeEEEEcCC------c-eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC
Q 021319          140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN------G-TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d  212 (314)
                      .+.+...... .+..+.|+|++ .++++..+      . ...+|.+... ....+..+ ..+..+  +|+|+.|+.++.+
T Consensus       162 ~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l~~~-~~~~~~--spdg~~l~~~~~~  235 (347)
T 2gop_A          162 EEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKMFEK-VSFYAV--DSDGERILLYGKP  235 (347)
T ss_dssp             TEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred             CeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ceEEeccC-cceeeE--CCCCCEEEEEEcc
Confidence            7653332223 67788999999 66666433      1 3344443322 23344444 444444  9999988877644


Q ss_pred             --------CeEEEeeCCCcEEEEEeeecccCeEE-EEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEc
Q 021319          213 --------SLVSLWDISEMLCVRTFTKLEWPVRT-ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN  283 (314)
Q Consensus       213 --------g~i~vwd~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~  283 (314)
                              ..|.+||  ++........++..+.. +.|+ ++ ++++++.++.+++| +.+++..........|.+++|+
T Consensus       236 ~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s  310 (347)
T 2gop_A          236 EKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVD  310 (347)
T ss_dssp             SSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEES
T ss_pred             ccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeee
Confidence                    3688888  45444334445667876 8999 88 99999999999999 8766654444456679999999


Q ss_pred             CCCCeeEEEecCC---cccccccce-EEecccc
Q 021319          284 PKYNLLAYAGDDK---NKYQADEGV-FRIYGFE  312 (314)
Q Consensus       284 ~~~~~la~~~~d~---~~~~~~~~~-~~~~~~~  312 (314)
                      |  .++++++.+.   .+|..+ |+ .++.+++
T Consensus       311 ~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n  340 (347)
T 2gop_A          311 E--IVVYLKETATRLRELFTWD-GEEKQLTDYN  340 (347)
T ss_dssp             S--SEEEEEECSSSCCEEEEES-SSEEECCCTT
T ss_pred             C--cEEEEEcCCCChHHheEeC-CcEEEecccc
Confidence            9  5666666554   356555 43 3444443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=8.7e-17  Score=136.07  Aligned_cols=266  Identities=9%  Similarity=0.071  Sum_probs=187.7

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~  100 (314)
                      ..|.++.|++++..+++.+.++.++.|.-.       ....+..+...+.+++|++++ ++++++..++.|.+||..+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------PWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------EEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCC
T ss_pred             cccceeeecCCccceeEEeecccCcccccc-------eeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCc
Confidence            357788999999888888889999999321       223456677778999999875 577788889999999998887


Q ss_pred             eeeeE-EecCceEEEEEccCCCEEEEEeCC----CcEEEEEccCCeEeeee---ccCcceeeEEeccCCCeEEEEcC---
Q 021319          101 CSQQA-ELSGENINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTG---  169 (314)
Q Consensus       101 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---  169 (314)
                      ..... .....+..++++|+++++++...+    +.|.+||....+.....   .....+..+++++++..+++...   
T Consensus        78 ~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  157 (333)
T 2dg1_A           78 IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS  157 (333)
T ss_dssp             EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred             EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence            65433 233556789999999988777666    68999998765433211   12345788999999988776654   


Q ss_pred             ---CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCC-cEEEEE-----eeec--ccCeE
Q 021319          170 ---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISE-MLCVRT-----FTKL--EWPVR  237 (314)
Q Consensus       170 ---~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~-~~~~~~-----~~~~--~~~v~  237 (314)
                         .+.+..++....+ ...+..+...+..++++|+++.++ +.+.++.|.+||+.+ +..+..     +...  ...+.
T Consensus       158 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~  236 (333)
T 2dg1_A          158 TNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPD  236 (333)
T ss_dssp             TBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEE
T ss_pred             cCCCceEEEEeCCCCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCC
Confidence               3556666554333 223333344578999999998654 445678999999853 221111     1111  13577


Q ss_pred             EEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccC-------ccceeEEcCCCCeeEEEecCC
Q 021319          238 TISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA-------AMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       238 ~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~-------~i~~v~~~~~~~~la~~~~d~  296 (314)
                      .++++++|+++++...++.|.+|+. +++.+..+....       .+.+++|+|++..|..++.++
T Consensus       237 ~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          237 SCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             ceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            8999999999888888899999998 567776665432       588999999987766555543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=2e-16  Score=130.95  Aligned_cols=235  Identities=10%  Similarity=0.118  Sum_probs=170.5

Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-------CceEEEEE-ccCCCEEEEEeC-CCcEEE
Q 021319           64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-------GENINITY-KPDGTHIAVGNR-DDELTI  134 (314)
Q Consensus        64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~l~~~~~-d~~i~i  134 (314)
                      ++...+.++++++++ +++++...++.|++||.. ++........       ..+..+++ .+++.++++... ++.|.+
T Consensus        27 g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCC-CEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            455678899999874 688888889999999987 5544433221       24567888 467766666543 789999


Q ss_pred             EEccCCeEeeeecc--CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee--ecccceEEEEECCCCCEEEEee
Q 021319          135 LDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVGS  210 (314)
Q Consensus       135 ~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~  210 (314)
                      || ...+.+.....  ...+..+++.+++..+++...++.+.+|+.. .+.+..+.  .+...+..++++++|+++++..
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            99 44554444432  2357889999999988887888999999854 33333332  2345689999999999888888


Q ss_pred             CCCeEEEeeCCCcEEEEEeeec--ccCeEEEEEccCCcEEEEecCCc-eEEEEECCCCCeEEEEeccC---ccceeEEcC
Q 021319          211 ADSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDL-FIDISNVHTGRTVHQIPCRA---AMNSVEWNP  284 (314)
Q Consensus       211 ~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~s~s~d~-~v~v~~~~~~~~~~~~~~~~---~i~~v~~~~  284 (314)
                      .++.|++||.. +..+..+...  ...+..++++|+|+++++...++ .|.+|+. +++.+..+....   .+.+++++|
T Consensus       183 ~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~  260 (286)
T 1q7f_A          183 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD  260 (286)
T ss_dssp             GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred             CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC
Confidence            89999999974 4455555433  24678999999999999888886 9999995 567776665322   367899999


Q ss_pred             CCCeeEEEecCCcccccccceEEeccccC
Q 021319          285 KYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       285 ~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +++++++ +.|        +.++||.+..
T Consensus       261 ~g~l~vs-~~~--------~~v~v~~~~~  280 (286)
T 1q7f_A          261 DGSVVLA-SKD--------YRLYIYRYVQ  280 (286)
T ss_dssp             TTEEEEE-ETT--------TEEEEEECSC
T ss_pred             CCcEEEE-CCC--------CeEEEEEccc
Confidence            9987776 434        5788998753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=1.1e-16  Score=135.50  Aligned_cols=236  Identities=14%  Similarity=0.107  Sum_probs=172.0

Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCC------------------------CcEEEEeCCCCceeeeEEe--cCceEEEEEccC
Q 021319           66 ADSVDQLCWDPKHADLIATASGD------------------------KTVRLWDARSGKCSQQAEL--SGENINITYKPD  119 (314)
Q Consensus        66 ~~~v~~l~~~~~~~~~l~s~~~D------------------------~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~  119 (314)
                      .+.+.+++++|++ +++++...+                        ++|.+||..+++.......  ...+..++++|+
T Consensus        23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            4568899999874 677777777                        4799999988887654321  135677999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCe-Eeeeec----------cCcceeeEEecc-CCCeEEEEc-CCceEEEEeCCCCCceee
Q 021319          120 GTHIAVGNRDDELTILDVRKFK-PIHRRK----------FGYEVNEIAWNM-TGEMFFLTT-GNGTVEVLTYPSLRPLDT  186 (314)
Q Consensus       120 ~~~l~~~~~d~~i~i~d~~~~~-~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~-~~g~~~~~~~~~~~~~~~  186 (314)
                      |+++++...++.|.+||..... .+....          .......+++++ ++..+++.. .++.+.+|+. ..+.+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEE
Confidence            9988888888999999975431 222221          112477899999 788888876 6899999984 4444444


Q ss_pred             eeec----------ccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEEEEEeee--cccCeEEEEEccCCcEEEEe--
Q 021319          187 VVAH----------TAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSHTGDYIASA--  251 (314)
Q Consensus       187 ~~~~----------~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~--  251 (314)
                      +...          -..+..++++|+ ++++++...++.|++||..+++.+..+..  +...+..++|+| +..+++.  
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~  259 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK  259 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence            4322          233889999998 77778888889999999987888777743  445688999999 4444443  


Q ss_pred             -----cCCceEEEEECCCCCeEEEEe----ccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          252 -----SEDLFIDISNVHTGRTVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       252 -----s~d~~v~v~~~~~~~~~~~~~----~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                           +.+..+.+|+..+++.+..+.    ......+|+++|++.++++...+        +.+++|+++
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~--------~~I~~~~~~  321 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT--------NTVWKFTLT  321 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS--------CCEEEEEEE
T ss_pred             EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC--------CEEEEEeCC
Confidence                 344589999999999888874    23458899999999777766655        467777663

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=1.4e-16  Score=134.82  Aligned_cols=239  Identities=11%  Similarity=0.026  Sum_probs=174.2

Q ss_pred             cccEEEEEECCCCCEEEEeeCC------------------------CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEc
Q 021319           20 KKKVHSVAWNCTGTKLASGSVD------------------------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD   75 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D------------------------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~   75 (314)
                      .+.+.+|+++|+|+++++...+                        +.|.+||.++.   ........++......++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEEEEEEC
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCceEEEEC
Confidence            4679999999999999998877                        47899987643   22222222455678899999


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCc-eeeeEEe----------cCceEEEEEcc-CCCEEEEEe-CCCcEEEEEccCCeE
Q 021319           76 PKHADLIATASGDKTVRLWDARSGK-CSQQAEL----------SGENINITYKP-DGTHIAVGN-RDDELTILDVRKFKP  142 (314)
Q Consensus        76 ~~~~~~l~s~~~D~~v~iwd~~~~~-~~~~~~~----------~~~~~~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~  142 (314)
                      |++ +++++...++.|++||..... ....+..          ...+..++++| ++.++++.+ .++.|.+||. ..+.
T Consensus       100 ~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~  177 (329)
T 3fvz_A          100 TDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKF  177 (329)
T ss_dssp             TTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCE
T ss_pred             CCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCE
Confidence            875 588888889999999986442 2222211          12466799999 788887776 6899999994 4444


Q ss_pred             eeeecc-C----------cceeeEEeccC-CCeEEEEcCCceEEEEeCCCCCceeeee--ecccceEEEEECC------C
Q 021319          143 IHRRKF-G----------YEVNEIAWNMT-GEMFFLTTGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDP------M  202 (314)
Q Consensus       143 ~~~~~~-~----------~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~------~  202 (314)
                      +..... +          .....++++++ +..+++...++.+.+|+..+.+.+..+.  .+...+..++++|      +
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence            433321 1          23678999998 7777888889999999987666665553  3556788999999      3


Q ss_pred             CCEEEEeeCCCeEEEeeCCCcEEEEEee---ecccCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319          203 GRYFAVGSADSLVSLWDISEMLCVRTFT---KLEWPVRTISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       203 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      ++..++...+..|++||..+++.+..+.   .+-..+..|+++|+|.++++...++.|++|+..
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             CCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            3333333344589999999998888773   344568899999999999999999999999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=1.9e-16  Score=135.61  Aligned_cols=254  Identities=15%  Similarity=0.088  Sum_probs=170.5

Q ss_pred             CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe----------CCCcEEEEeCCCCceeeeEEec-
Q 021319           40 VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS----------GDKTVRLWDARSGKCSQQAELS-  108 (314)
Q Consensus        40 ~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~D~~v~iwd~~~~~~~~~~~~~-  108 (314)
                      .|+.|.+||.++..   .. ..+..+..+  .++++|++ ++++++.          .+++|.+||..+.+........ 
T Consensus        29 ~d~~v~v~D~~t~~---~~-~~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~  101 (361)
T 2oiz_A           29 TESRVHVYDYTNGK---FL-GMVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP  101 (361)
T ss_dssp             GGCEEEEEETTTCC---EE-EEEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred             ccCeEEEEECCCCe---EE-EEecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence            47899999976532   22 244555544  88999986 4666554          3678999999988887766543 


Q ss_pred             ------CceEEEEEccCCCEEEEEeC--CCcEEEEEccCCeEeee-eccCcceeeEEeccCC-CeEEEEcCCceEEEEeC
Q 021319          109 ------GENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTY  178 (314)
Q Consensus       109 ------~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~  178 (314)
                            .....++++|||++|+++..  ++.|.+||+.+.+.+.. +..+.. ..+...|.+ ..+++.+.+|.+.++..
T Consensus       102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~  180 (361)
T 2oiz_A          102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINL  180 (361)
T ss_dssp             TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred             cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence                  23446889999999998864  57899999999888776 554322 224455554 56677778888888876


Q ss_pred             CC-CCceee------eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc--EEEEEeeecc----------cCeEEE
Q 021319          179 PS-LRPLDT------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLE----------WPVRTI  239 (314)
Q Consensus       179 ~~-~~~~~~------~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~----------~~v~~~  239 (314)
                      .. .+....      +..... ...+.+++++..++..+.++.|.++|+...  .....+....          .....+
T Consensus       181 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~  259 (361)
T 2oiz_A          181 GEDGKVASQSRSKQMFSVKDD-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV  259 (361)
T ss_dssp             CTTSSEEEEEECCCCSCTTTS-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred             CCCCcEeeeccccceEcCCCC-ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence            43 222211      111111 112233566767776778899999998643  2223221110          111237


Q ss_pred             EEccCCcEEEEecC-----------CceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEe
Q 021319          240 SFSHTGDYIASASE-----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRI  308 (314)
Q Consensus       240 ~~sp~~~~l~s~s~-----------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~  308 (314)
                      +|+|+++.++.+..           +..|.+||..+++.+..++... ..+++|+|++++|++++.         +++.|
T Consensus       260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~---------~~v~v  329 (361)
T 2oiz_A          260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG---------GNVNV  329 (361)
T ss_dssp             EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS---------SCEEE
T ss_pred             EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC---------CeEEE
Confidence            89999887776532           3589999999999999988777 999999999998887763         56777


Q ss_pred             cccc
Q 021319          309 YGFE  312 (314)
Q Consensus       309 ~~~~  312 (314)
                      |+.+
T Consensus       330 ~D~~  333 (361)
T 2oiz_A          330 YDIS  333 (361)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            7654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.77  E-value=9.5e-16  Score=127.57  Aligned_cols=232  Identities=13%  Similarity=0.063  Sum_probs=164.2

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK  141 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  141 (314)
                      +..+.....+++|+|++..+++++..++.|..||..++ ..........+..++++++|+++++...++.|.+||..+.+
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence            44556667899999986447888889999999999877 32222223456789999999988777777899999986655


Q ss_pred             Eeeeec--c---CcceeeEEeccCCCeEEEEc-----------------CCceEEEEeCCCCCceeeeeecccceEEEEE
Q 021319          142 PIHRRK--F---GYEVNEIAWNMTGEMFFLTT-----------------GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI  199 (314)
Q Consensus       142 ~~~~~~--~---~~~~~~~~~~~~~~~~~~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~  199 (314)
                      ......  .   ...+..++++++|..+++..                 ..+.+..++..  ..+..+..+...+..++|
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~~~~gi~~  179 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRVKPNGLAF  179 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCSSEEEEEE
T ss_pred             EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCCCCccEEE
Confidence            332211  1   12356789999999887632                 13455555543  334444455566889999


Q ss_pred             CCCCCEEEEeeCCCeEEEeeCC-CcEE---EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccC
Q 021319          200 DPMGRYFAVGSADSLVSLWDIS-EMLC---VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA  275 (314)
Q Consensus       200 ~~~~~~l~t~~~dg~i~vwd~~-~~~~---~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~  275 (314)
                      +|+++.+++.+.++.|.+||+. ++..   ...+......+..++++|+|++.++.  ++.|.+|+.. ++.+..+....
T Consensus       180 s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~  256 (296)
T 3e5z_A          180 LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQ  256 (296)
T ss_dssp             CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSS
T ss_pred             CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCC
Confidence            9999988777778999999986 4443   23332233456789999999987766  7889999986 77777776443


Q ss_pred             ccceeEE-cCCCCeeEEEecCCcccc
Q 021319          276 AMNSVEW-NPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       276 ~i~~v~~-~~~~~~la~~~~d~~~~~  300 (314)
                      .+++++| .|+++.|..++.+ .+|.
T Consensus       257 ~~~~~~f~~~d~~~L~v~t~~-~l~~  281 (296)
T 3e5z_A          257 TTSNLCFGGPEGRTLYMTVST-EFWS  281 (296)
T ss_dssp             CCCEEEEESTTSCEEEEEETT-EEEE
T ss_pred             CceeEEEECCCCCEEEEEcCC-eEEE
Confidence            4999999 6898888777755 3444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=3.1e-15  Score=124.42  Aligned_cols=241  Identities=10%  Similarity=0.042  Sum_probs=169.6

Q ss_pred             eeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      +.+..+.....+++|+|+|+ .++++..++.|..|+.+..    .  ..+..+...+.++++++++ .++++...++.|.
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~--~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~   93 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----L--SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLE   93 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----E--EEEESSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----e--EEEECCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence            44556677889999999998 7888888999999997642    2  2344567789999999875 5777777779999


Q ss_pred             EEeCCCCceeeeEEec-----CceEEEEEccCCCEEEEE----e-------------CCCcEEEEEccCCeEeeeeccCc
Q 021319           93 LWDARSGKCSQQAELS-----GENINITYKPDGTHIAVG----N-------------RDDELTILDVRKFKPIHRRKFGY  150 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~----~-------------~d~~i~i~d~~~~~~~~~~~~~~  150 (314)
                      +||..+++........     .....+++.|+|+++++.    +             ..+.|..++.. .+.........
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~  172 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV  172 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC
Confidence            9999888754432211     122358899999988863    2             13456666654 33222222334


Q ss_pred             ceeeEEeccCCCeEEEEcCCceEEEEeCC-CCCc---eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE
Q 021319          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRP---LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~---~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~  226 (314)
                      ....++|+|+++.+++...++.+.+|+.. ..+.   ...+..+...+..++++++|++.++.  ++.|.+||.. ++.+
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL  249 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence            56789999999988667778999999875 2222   12222244556789999999977666  7889999986 6667


Q ss_pred             EEeeecccCeEEEEE-ccCCcEEEEecCCceEEEEECCCCCe
Q 021319          227 RTFTKLEWPVRTISF-SHTGDYIASASEDLFIDISNVHTGRT  267 (314)
Q Consensus       227 ~~~~~~~~~v~~~~~-sp~~~~l~s~s~d~~v~v~~~~~~~~  267 (314)
                      ..+..+.. +.+++| +|+++.|+.++.++ +.-++..+.+.
T Consensus       250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             EEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             EEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence            77766665 889999 58999999888875 44445555443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.75  E-value=9.4e-16  Score=129.62  Aligned_cols=260  Identities=9%  Similarity=0.035  Sum_probs=180.3

Q ss_pred             CCCcEEEeecCCCCCCceeeEEee-----cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEE
Q 021319           40 VDQTARVWHIEPHGHGKVKDIELR-----GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI  114 (314)
Q Consensus        40 ~D~~v~iw~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~  114 (314)
                      .+++|.++|.++..   .......     ........+++..  +.+.++...++.|.+||..+++....+.....+..+
T Consensus        15 ~~~~l~~~d~~t~~---~~~~i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCE---VENEVFYRANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTE---EECSHHHHHHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEE
T ss_pred             CCceEEEEECCCCE---EhhhhHhhhcCcccCccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEE
Confidence            48899999987532   1110000     1123456777753  456677777899999999999987777655667788


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCc------ceeeEEeccCCCeEEEEc-CCceEEEEeCCCCCceeee
Q 021319          115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY------EVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLDTV  187 (314)
Q Consensus       115 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~  187 (314)
                      +++++++..++...++.|.++|+.+.+....+..+.      ....+++ ..+..+++.. .++.+.+++..+.+....+
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i  168 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL  168 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence            998898544444478999999999988777666555      5667777 4444444444 4889999998877665555


Q ss_pred             eecccceEEEEECCCCCEEEEeeCC----------CeEEEeeCCCcEEEEEeeec-ccCeEEEEEccCCcEEEEecCCce
Q 021319          188 VAHTAGCYCIAIDPMGRYFAVGSAD----------SLVSLWDISEMLCVRTFTKL-EWPVRTISFSHTGDYIASASEDLF  256 (314)
Q Consensus       188 ~~~~~~i~~i~~~~~~~~l~t~~~d----------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~s~d~~  256 (314)
                      .. ...+..++++|+|++++++..+          +.|.++|..+++..+.+... ......++|+|++++|..+..  .
T Consensus       169 ~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~  245 (328)
T 3dsm_A          169 TI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D  245 (328)
T ss_dssp             EC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S
T ss_pred             Ec-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E
Confidence            43 3456789999999988777655          78999999988877666432 235789999999998887765  8


Q ss_pred             EEEEECCCCCeEEE--Eec-cCccceeEEcCC-CCeeEEEecCCcccccccceEEecccc
Q 021319          257 IDISNVHTGRTVHQ--IPC-RAAMNSVEWNPK-YNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       257 v~v~~~~~~~~~~~--~~~-~~~i~~v~~~~~-~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      |.++|..+++....  +.. ......++++|+ +.++++...|   | ...|.+.+|+.+
T Consensus       246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~---y-~~~~~V~v~d~~  301 (328)
T 3dsm_A          246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAID---Y-QQQGIVYRYSPQ  301 (328)
T ss_dssp             EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTT---S-SSEEEEEEECTT
T ss_pred             EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccc---c-ccCCEEEEECCC
Confidence            99999988775421  121 346789999994 5555544111   1 124667777653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=4.2e-16  Score=145.90  Aligned_cols=263  Identities=13%  Similarity=0.143  Sum_probs=167.7

Q ss_pred             EEEEECCCCCEEEEeeCC---------CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           24 HSVAWNCTGTKLASGSVD---------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        24 ~~v~~s~~g~~l~s~~~D---------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      .++.|||||++|+.++.+         +.+.+||++++.     ...+..|...+...+|+|++. .|+.+ .|+.|.+|
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~-----~~~l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~  137 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-----LITEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVK  137 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-----ECCSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEE
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc-----EEEcccCCCcceeeEECCCCC-EEEEE-ECCeEEEE
Confidence            458899999999999887         455699987632     224567788899999999864 56666 46899999


Q ss_pred             eCCCCceeeeEEec-------------------CceEEEEEccCCCEEEEEeCCC-------------------------
Q 021319           95 DARSGKCSQQAELS-------------------GENINITYKPDGTHIAVGNRDD-------------------------  130 (314)
Q Consensus        95 d~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~d~-------------------------  130 (314)
                      |..++...+.....                   +....+.|+|||+.|+....|.                         
T Consensus       138 ~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~  217 (740)
T 4a5s_A          138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP  217 (740)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred             ECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence            99887654321111                   1112478999999999875332                         


Q ss_pred             -----------cEEEEEccC---C---eEeeeec------cCcceeeEEeccCCCeEEEEcC----CceEEEEeCCCCC-
Q 021319          131 -----------ELTILDVRK---F---KPIHRRK------FGYEVNEIAWNMTGEMFFLTTG----NGTVEVLTYPSLR-  182 (314)
Q Consensus       131 -----------~i~i~d~~~---~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~-  182 (314)
                                 .+.+||+.+   .   +......      ....+..++|+|+++.++....    ...+.+|+..+.+ 
T Consensus       218 yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~  297 (740)
T 4a5s_A          218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG  297 (740)
T ss_dssp             CCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred             CCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence                       367788876   5   2221111      2344678899999986655432    3468888876655 


Q ss_pred             -----ceeee--eecccceE-----EEEECCCCCEEE-Eee-CCC--eEEEeeCCCcEEEEEeeecccCeEEEEEccCCc
Q 021319          183 -----PLDTV--VAHTAGCY-----CIAIDPMGRYFA-VGS-ADS--LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD  246 (314)
Q Consensus       183 -----~~~~~--~~~~~~i~-----~i~~~~~~~~l~-t~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~  246 (314)
                           ....+  ..|...+.     ..+|+|||+.++ ..+ .+|  .|.+||...+... .+....+.+..+.. ++++
T Consensus       298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~  375 (740)
T 4a5s_A          298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSD  375 (740)
T ss_dssp             EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSS
T ss_pred             ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCC
Confidence                 12222  33444433     678999999876 554 444  5888888765443 45555677776542 4455


Q ss_pred             E-EEEecC----CceEEEEEC--CCCCeEEEEec-----cCccceeEEcCCCCeeEEEecC
Q 021319          247 Y-IASASE----DLFIDISNV--HTGRTVHQIPC-----RAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       247 ~-l~s~s~----d~~v~v~~~--~~~~~~~~~~~-----~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      . +++++.    .+..+||.+  ..+.....+.+     ......+.|+|++..++.....
T Consensus       376 ~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~  436 (740)
T 4a5s_A          376 YLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSG  436 (740)
T ss_dssp             EEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred             EEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCC
Confidence            4 445554    234455544  33333223332     2467899999999887655543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.75  E-value=2.8e-15  Score=126.70  Aligned_cols=251  Identities=8%  Similarity=0.038  Sum_probs=180.5

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~  100 (314)
                      .....+.+. +++..++...++.|.+||.++..  .+.  .+. .......+++++++ .+.++...++.|.+||..+++
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~--~~~--~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~  116 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK--EVG--RIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYE  116 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC--EEE--EEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccE--EEE--EcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCe
Confidence            346777774 45566667778999999987632  112  233 34567889998775 555555589999999999998


Q ss_pred             eeeeEEecC------ceEEEEEccCCCEEEEEe--CCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC--
Q 021319          101 CSQQAELSG------ENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN--  170 (314)
Q Consensus       101 ~~~~~~~~~------~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  170 (314)
                      .........      ....+++  ++..++++.  .++.|.++|+.+.+.+..+..+.....+.++++++.+++...+  
T Consensus       117 ~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~  194 (328)
T 3dsm_A          117 ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYE  194 (328)
T ss_dssp             EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCT
T ss_pred             EEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCcc
Confidence            777666554      4555666  345555554  4889999999999888877777677889999999877776654  


Q ss_pred             --------ceEEEEeCCCCCceeeeeec-ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE-E-eeecccCeEEE
Q 021319          171 --------GTVEVLTYPSLRPLDTVVAH-TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-T-FTKLEWPVRTI  239 (314)
Q Consensus       171 --------g~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~-~~~~~~~v~~~  239 (314)
                              +.+.+++..+.+....+... ...+..++++|+++.|.++..  .|.+||..+++... . +.........+
T Consensus       195 ~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi  272 (328)
T 3dsm_A          195 GSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGL  272 (328)
T ss_dssp             TCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEE
T ss_pred             CCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEE
Confidence                    78999998776655444322 236899999999998887765  89999998765431 1 11113457889


Q ss_pred             EEcc-CCcEEEEe----cCCceEEEEECCCCCeEEEEeccCccceeEEc
Q 021319          240 SFSH-TGDYIASA----SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN  283 (314)
Q Consensus       240 ~~sp-~~~~l~s~----s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~  283 (314)
                      +++| ++.+.++.    ..++.|.+||.. ++.+..+.....-..++|-
T Consensus       273 ~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~  320 (328)
T 3dsm_A          273 TVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK  320 (328)
T ss_dssp             EECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred             EEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence            9999 56666666    678999999998 9999888765556666663

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.74  E-value=6.8e-16  Score=142.65  Aligned_cols=250  Identities=13%  Similarity=-0.015  Sum_probs=158.9

Q ss_pred             eeeecccccEE---------EEEEC--CCCCE-EEEeeC-CCcEEEeecCCCCCCceeeEEeec-----CCCCEEEEEEc
Q 021319           14 REYTGHKKKVH---------SVAWN--CTGTK-LASGSV-DQTARVWHIEPHGHGKVKDIELRG-----HADSVDQLCWD   75 (314)
Q Consensus        14 ~~~~gH~~~V~---------~v~~s--~~g~~-l~s~~~-D~~v~iw~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~   75 (314)
                      +.+..|...+.         ...|+  |||+. |+.++. +..|.+|+++....+..  ..+..     |...+..++|+
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~--~~l~~~~~~~~~~~~~~~~~s  138 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP--RPLTPVSAVGGGLRWADPVLL  138 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC--EECSCCCCSTTCEEEEEEEEE
T ss_pred             ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC--EeccCCccCCCCccccCcEEC
Confidence            45666665655         56565  99998 776553 44454444430010111  23334     66778899999


Q ss_pred             CCCCCEEEEEeCC----------CcEEEEeCCC------CceeeeE-EecCceEEEEEccCCCEEEEEeCCC--------
Q 021319           76 PKHADLIATASGD----------KTVRLWDARS------GKCSQQA-ELSGENINITYKPDGTHIAVGNRDD--------  130 (314)
Q Consensus        76 ~~~~~~l~s~~~D----------~~v~iwd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~--------  130 (314)
                      |++ +.|++++.|          ..|.+||+.+      +...... ........++|+|||+.|+..+.++        
T Consensus       139 pDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~  217 (662)
T 3azo_A          139 PER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGT  217 (662)
T ss_dssp             TTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCE
T ss_pred             CCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCc
Confidence            986 577777766          5899999987      5543332 2223344578999999999877543        


Q ss_pred             cEEEEEcc-CC---eEeeeec-cCcceeeEEeccCCCeEEEEcCCc--eEEEEeCCCCCceeeeeecccc--------eE
Q 021319          131 ELTILDVR-KF---KPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNG--TVEVLTYPSLRPLDTVVAHTAG--------CY  195 (314)
Q Consensus       131 ~i~i~d~~-~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~--------i~  195 (314)
                      .|.+||+. +.   +...... ....+..+.|+|+++.++++..++  .+..++....+.......+...        +.
T Consensus       218 ~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~  297 (662)
T 3azo_A          218 ELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMR  297 (662)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCC
T ss_pred             EEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCc
Confidence            69999998 45   3222222 245678899999999777777777  5555655444332222222221        46


Q ss_pred             EEEECCCCCEEEEeeCCCeEEEe--eCCCcEEEEEeeecccCeEEE-EEccCCcEEEEecCCc--eEEEEECCCCCeE
Q 021319          196 CIAIDPMGRYFAVGSADSLVSLW--DISEMLCVRTFTKLEWPVRTI-SFSHTGDYIASASEDL--FIDISNVHTGRTV  268 (314)
Q Consensus       196 ~i~~~~~~~~l~t~~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s~s~d~--~v~v~~~~~~~~~  268 (314)
                      .++|+|++++++++.. +.+++|  |+..+. ++.+..+...+..+ +++++.-++++++.+.  .+.++|..+++..
T Consensus       298 ~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          298 WFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR  373 (662)
T ss_dssp             SEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             eEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence            7899999999999998 999999  555554 56666666667766 5544444555666664  4555676676643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=6.5e-16  Score=133.31  Aligned_cols=249  Identities=11%  Similarity=0.032  Sum_probs=157.4

Q ss_pred             EeecCCCCEEE-----EEEcCCCCCEEEEEeC-CCc--EEEEeCCCCceeeeEEecCceE-EEEEccCCCEEEEEeCCCc
Q 021319           61 ELRGHADSVDQ-----LCWDPKHADLIATASG-DKT--VRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDE  131 (314)
Q Consensus        61 ~~~~h~~~v~~-----l~~~~~~~~~l~s~~~-D~~--v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~  131 (314)
                      .+..|......     .+|+|++ +.|+.++. ++.  |.+||+.+++............ ...|+||++.|+.+..+..
T Consensus        25 ~lt~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~  103 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN  103 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred             EecCCcccccchhhcCccCCCCC-CEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence            45566655555     7899986 46666665 674  7888998887655443333232 5679999999999999999


Q ss_pred             EEEEEccCCeEeeeeccCcc-eeeE--EeccCCCeEEEE----------------------cCCceEEEEeCCCCCceee
Q 021319          132 LTILDVRKFKPIHRRKFGYE-VNEI--AWNMTGEMFFLT----------------------TGNGTVEVLTYPSLRPLDT  186 (314)
Q Consensus       132 i~i~d~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~----------------------~~~g~~~~~~~~~~~~~~~  186 (314)
                      +.+||+.+.+.......... ....  ..++++..++..                      .....+.++++...+. ..
T Consensus       104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~  182 (388)
T 3pe7_A          104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TV  182 (388)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EE
T ss_pred             EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-EE
Confidence            99999988765543332221 2222  347888877642                      1346788888876643 34


Q ss_pred             eeecccceEEEEECC-CCCEEEEeeCC------CeEEEeeCCCcEEEEEeeecc--cCeEEEEEccCCcEEEEecCC---
Q 021319          187 VVAHTAGCYCIAIDP-MGRYFAVGSAD------SLVSLWDISEMLCVRTFTKLE--WPVRTISFSHTGDYIASASED---  254 (314)
Q Consensus       187 ~~~~~~~i~~i~~~~-~~~~l~t~~~d------g~i~vwd~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~s~d---  254 (314)
                      +..+...+..++|+| +|+.|+....+      ..|.++|..... .+.+..+.  ..+...+|+|||+.|+..+.+   
T Consensus       183 l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  261 (388)
T 3pe7_A          183 ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS  261 (388)
T ss_dssp             EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred             eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCC
Confidence            445666789999999 99988876653      368888876543 33343333  247788999999988765432   


Q ss_pred             --ceEEEEECCCCCeEEEEeccC------ccceeEEcCCCCeeEEEecCCcccc-cccceEEecccc
Q 021319          255 --LFIDISNVHTGRTVHQIPCRA------AMNSVEWNPKYNLLAYAGDDKNKYQ-ADEGVFRIYGFE  312 (314)
Q Consensus       255 --~~v~v~~~~~~~~~~~~~~~~------~i~~v~~~~~~~~la~~~~d~~~~~-~~~~~~~~~~~~  312 (314)
                        ..|.+||+.+++.........      ....++|+|+++.|++...+...|. .....+.+|+++
T Consensus       262 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          262 PDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK  328 (388)
T ss_dssp             CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred             CcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence              249999999987533222111      1345689999999887654321111 123456666653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.74  E-value=2.6e-13  Score=112.41  Aligned_cols=265  Identities=11%  Similarity=0.025  Sum_probs=186.3

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      +..+...+.+++++++|...++...++.|.+|+.+ .   .........+...+..+++++++ .+.++...++.|..||
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-G---KITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRIT   84 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEEC
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C---CeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEEC
Confidence            34556789999999999988887778899999875 2   22333333455678999999864 5777766688999999


Q ss_pred             CCCCceeeeEEe---cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-e-ccCcceeeEEeccCCCeEEEEcCC
Q 021319           96 ARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-R-KFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        96 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      .. ++. .....   ......+++.+++.++++...++.+..+|. ..+.... . .....+..+++.+++..+++....
T Consensus        85 ~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  161 (299)
T 2z2n_A           85 KK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQN  161 (299)
T ss_dssp             TT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCC
Confidence            86 443 22221   234567889999988877777888999998 4332221 1 123457788899999888877778


Q ss_pred             ceEEEEeCCCCCceee-eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE-eeecccCeEEEEEccCCcEE
Q 021319          171 GTVEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHTGDYI  248 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l  248 (314)
                      +.+..++. ..+.... .......+..+++++++++.++...++.|..||. ++..... .......+..++++|+|++.
T Consensus       162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~  239 (299)
T 2z2n_A          162 NAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLW  239 (299)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred             CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEE
Confidence            89999987 4332221 2223456889999999998777767889999998 5543321 22233568899999999988


Q ss_pred             EEecCCceEEEEECCCCCeEEEEec---cCccceeEEcCCCCeeEEEe
Q 021319          249 ASASEDLFIDISNVHTGRTVHQIPC---RAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       249 ~s~s~d~~v~v~~~~~~~~~~~~~~---~~~i~~v~~~~~~~~la~~~  293 (314)
                      ++...++.|..++. +++ +..+..   ...+.++++ +++.+.++.+
T Consensus       240 v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~  284 (299)
T 2z2n_A          240 FTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME  284 (299)
T ss_dssp             EEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred             EeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence            87777889999998 443 444432   246889999 8888776554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.73  E-value=4.3e-14  Score=119.44  Aligned_cols=234  Identities=10%  Similarity=0.029  Sum_probs=159.5

Q ss_pred             eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC----Cc
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KT   90 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D----~~   90 (314)
                      .+.++...+.+++|+++|++++++..++.|.+|+.+...   ... ....+...+.+++++|++ +++++...+    +.
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~---~~~-~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE---IKR-PFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGG  113 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC---EEE-EEECSSSSEEEEEECTTS-CEEEEECTTSSSCCE
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc---EEE-EeeCCCCCcceEEECCCC-cEEEEeCCCCCCCce
Confidence            455677778999999999988888889999999876432   222 122466789999999875 577776666    68


Q ss_pred             EEEEeCCCCceeeeEE---ecCceEEEEEccCCCEEEEEeC------CCcEEEEEccCCeEeeeeccCcceeeEEeccCC
Q 021319           91 VRLWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNR------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG  161 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      |.+||..++.......   .......+.++|+|+++++...      .+.|..+|....+.............++|++++
T Consensus       114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE  193 (333)
T ss_dssp             EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred             EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence            9999998776543221   1234567899999987776653      245666666543332211222346788999999


Q ss_pred             CeEE-EEcCCceEEEEeCCC-CCceeee-----eecc--cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec
Q 021319          162 EMFF-LTTGNGTVEVLTYPS-LRPLDTV-----VAHT--AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (314)
Q Consensus       162 ~~~~-~~~~~g~~~~~~~~~-~~~~~~~-----~~~~--~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~  232 (314)
                      +.++ +...++.+.+|+... ...+..+     ....  ..+..++++++|+++++...++.|.+||. +++.+..+...
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~  272 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP  272 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence            8554 445678999998753 2222111     1111  35788999999998888777899999998 45556666443


Q ss_pred             cc------CeEEEEEccCCcEEEEecCC
Q 021319          233 EW------PVRTISFSHTGDYIASASED  254 (314)
Q Consensus       233 ~~------~v~~~~~sp~~~~l~s~s~d  254 (314)
                      ..      .+.+++|+|+++.|+.++.+
T Consensus       273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          273 GRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             TGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCccccccCcceEEECCCCCEEEEEeCc
Confidence            32      57899999998777655554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.73  E-value=5.7e-15  Score=121.58  Aligned_cols=209  Identities=12%  Similarity=0.053  Sum_probs=165.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeEEecC--ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC--cceee
Q 021319           79 ADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNE  154 (314)
Q Consensus        79 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~  154 (314)
                      +++|++++.|+.|.+||..+|+.+..+....  ....+.+.|+|++++  +.++.+..+|. +.+.+.++..+  ..+..
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            3689999999999999998999887776654  456788999999888  45778999998 78877777654  46778


Q ss_pred             EEeccCCCeEEEEcC-CceEEEEeCCCCCceeeee------ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE
Q 021319          155 IAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVV------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR  227 (314)
Q Consensus       155 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~  227 (314)
                      +.+.++++.+++... ++.+..++. ..+.+..+.      .+...+..+++.++|+++++...++.|..||.. ++.+.
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w  159 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN  159 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence            889999999998877 777877764 444443332      112234566789999999999999999999987 88888


Q ss_pred             EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccC-------ccceeEEcCCCCeeEEEe
Q 021319          228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA-------AMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       228 ~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~-------~i~~v~~~~~~~~la~~~  293 (314)
                      ++.... .+.++...|+|.++++++.++.|..+|..+|+.+.++....       -+.+++.-++++++++..
T Consensus       160 ~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          160 SVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            876543 45567888999999999999999999999999999986321       267888899999998773

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=5.1e-15  Score=137.97  Aligned_cols=243  Identities=12%  Similarity=0.013  Sum_probs=164.0

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCC-----cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc--
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQ-----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT--   90 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~-----~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~--   90 (314)
                      +|...+..++|||||++|+.++.++     .|++||++++.   .....+..  ..+..++|+|++ +.|+.++.|+.  
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~---~~~~~~~~--~~~~~~~wspDg-~~l~~~~~~~~~~  195 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK---ELPDVLER--VKFSCMAWTHDG-KGMFYNAYPQQDG  195 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE---EEEEEEEE--ECSCCEEECTTS-SEEEEEECCCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC---CCcccccC--cccceEEEEeCC-CEEEEEEECCccc
Confidence            3545789999999999998776543     89999997632   22222222  225678999985 56777777765  


Q ss_pred             --------------EEEEeCCCCceeeeE--Ee---cCceEEEEEccCCCEEEEEeC-----CCcEEEEEccC------C
Q 021319           91 --------------VRLWDARSGKCSQQA--EL---SGENINITYKPDGTHIAVGNR-----DDELTILDVRK------F  140 (314)
Q Consensus        91 --------------v~iwd~~~~~~~~~~--~~---~~~~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~  140 (314)
                                    |.+|++.++......  ..   ......+.|+|||++|+....     +..+.++|+..      .
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                          999999877632111  11   122467899999999987764     56799999875      3


Q ss_pred             e-EeeeeccCcceeeEEeccCCCeEEEEcC----CceEEEEeCCCCCc--eeeeeeccc--ceEEEEECCCCCEEEEeeC
Q 021319          141 K-PIHRRKFGYEVNEIAWNMTGEMFFLTTG----NGTVEVLTYPSLRP--LDTVVAHTA--GCYCIAIDPMGRYFAVGSA  211 (314)
Q Consensus       141 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~--~~~~~~~~~--~i~~i~~~~~~~~l~t~~~  211 (314)
                      . ...............|++++..+++.+.    .+.+.+++......  ...+..|..  .+..+++++++.++++...
T Consensus       276 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~  355 (710)
T 2xdw_A          276 ILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH  355 (710)
T ss_dssp             SCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred             ccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence            2 1222222111122357788887776654    34688888765532  244444544  5778889888888888888


Q ss_pred             CCe--EEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe----cCCceEEEEECCCCC
Q 021319          212 DSL--VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA----SEDLFIDISNVHTGR  266 (314)
Q Consensus       212 dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~----s~d~~v~v~~~~~~~  266 (314)
                      ++.  |.+||+.+++.++.+..+...+..++++|+++.++..    ...+.+..||+.+++
T Consensus       356 ~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            884  6667776777667776666678889999998766522    235789999998876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.73  E-value=4.2e-15  Score=121.73  Aligned_cols=239  Identities=10%  Similarity=-0.022  Sum_probs=166.8

Q ss_pred             cEEEEEECCCCCEEE-EeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319           22 KVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~-s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~  100 (314)
                      ...+++++++|+.++ +...++.|.+|+.....   ... ....+...+.++++++++ +++++.. ++.|.+||.....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~~-~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTV-LPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC--------EE-CCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cce-EeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce
Confidence            788999999999887 55778999999864321   111 112333567789999874 5666555 8899999987654


Q ss_pred             eeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEEEcCCceEEEEeC
Q 021319          101 CSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (314)
Q Consensus       101 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (314)
                      ....... ......+++.++++.+++...++.|.+++..+......... ...+..+++++++..+++...++.+.+|+.
T Consensus        99 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEec
Confidence            3322111 14567899999999777777788899998665433222111 235678899999998777777889999987


Q ss_pred             CCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEE
Q 021319          179 PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFID  258 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~  258 (314)
                      ...........+...+..++++++|.++++...++.|.+||.............-..+..++++|+|+++++.+.++.|.
T Consensus       179 ~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~  258 (270)
T 1rwi_B          179 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  258 (270)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             CCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence            65543322223335689999999998888777788999999876543322112224588999999999999999999999


Q ss_pred             EEECCCCC
Q 021319          259 ISNVHTGR  266 (314)
Q Consensus       259 v~~~~~~~  266 (314)
                      +++....+
T Consensus       259 ~~~~~~~~  266 (270)
T 1rwi_B          259 KLTSLEHH  266 (270)
T ss_dssp             EECCCGGG
T ss_pred             EEcCCCcc
Confidence            99886544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=2.3e-13  Score=122.73  Aligned_cols=258  Identities=14%  Similarity=0.088  Sum_probs=181.2

Q ss_pred             CCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC--CCceeeeEEe
Q 021319           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAEL  107 (314)
Q Consensus        30 ~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~--~~~~~~~~~~  107 (314)
                      |.+.++++...++.|.++|.++..   +. ..+. ....+..+.++|++ .++++++.|+.|.+||+.  +++.+.....
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~---v~-~~i~-~g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYE---IK-TVLD-TGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC---EE-EEEE-CSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCceEEEEeCCCCeEEEEECCCCe---EE-EEEe-CCCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence            444567788889999999987632   22 1232 23456789999985 577788899999999996  7777777766


Q ss_pred             cCceEEEEEc----cCCCEEEEEe-CCCcEEEEEccCCeEeeeeccCc------------ceeeEEeccCCCeEEEE-cC
Q 021319          108 SGENINITYK----PDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGY------------EVNEIAWNMTGEMFFLT-TG  169 (314)
Q Consensus       108 ~~~~~~~~~~----~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~  169 (314)
                      ......++++    |||++++++. .++.+.++|..+.+++..+....            .+..+..++.+..+++. .+
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            6677889999    6999888765 46889999999988877654321            34566667776655554 56


Q ss_pred             CceEEEEeCCCCCceeee-eecccceEEEEECCCCCEEEEee-CCCeEEEeeCCCcEEEEEeee-cc--cCeEEEE-Ecc
Q 021319          170 NGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTK-LE--WPVRTIS-FSH  243 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~~~~~~~~~-~~--~~v~~~~-~sp  243 (314)
                      .|.+.++++...+.+... .........+.|+|+++++++++ .++.|.++|+.+++.+..+.. ..  .+-.... ++|
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p  398 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP  398 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred             CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence            699999998765432211 12234466889999999876655 568899999999987776643 22  1112223 578


Q ss_pred             CC-cEEEEec-CCceEEEEECCC-------CCeEEEEeccC-ccceeEEcCCCCeeEEEe
Q 021319          244 TG-DYIASAS-EDLFIDISNVHT-------GRTVHQIPCRA-AMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       244 ~~-~~l~s~s-~d~~v~v~~~~~-------~~~~~~~~~~~-~i~~v~~~~~~~~la~~~  293 (314)
                      ++ .+.+++. .++.|.++|..+       .+.++.++..+ .-.-|+.||+++.|....
T Consensus       399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence            74 4555553 468999999987       56777776533 335588999998876655

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=2.5e-14  Score=133.27  Aligned_cols=261  Identities=8%  Similarity=0.001  Sum_probs=170.3

Q ss_pred             CCCCEEEEeeCCC---cEEEeecCCCCCCceeeEE----eecCCCCEEEEEEcCCCCCEEEEEeCC-C----cEEEEeCC
Q 021319           30 CTGTKLASGSVDQ---TARVWHIEPHGHGKVKDIE----LRGHADSVDQLCWDPKHADLIATASGD-K----TVRLWDAR   97 (314)
Q Consensus        30 ~~g~~l~s~~~D~---~v~iw~~~~~~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~l~s~~~D-~----~v~iwd~~   97 (314)
                      |+|++++-...++   .-.+|-.+...........    ..+|...+..++|+|++. +|+.++.+ |    .|++||+.
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~  159 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVD  159 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECC
Confidence            8888766554322   2246655432211111110    123444688999999864 66544443 3    89999999


Q ss_pred             CCceeeeEEecCceEEEEEccCCCEEEEEeCCCc----------------EEEEEccCCeE----eeeec-cCcceeeEE
Q 021319           98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDE----------------LTILDVRKFKP----IHRRK-FGYEVNEIA  156 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~----~~~~~-~~~~~~~~~  156 (314)
                      +++.............++|+|||+.|+.+..++.                |.+|++.+.+.    +.... .......+.
T Consensus       160 tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~  239 (710)
T 2xdw_A          160 GAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE  239 (710)
T ss_dssp             TTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence            9886653222222346899999999999887765                99999876542    22211 123356789


Q ss_pred             eccCCCeEEEEcC-----CceEEEEeCCC------CC-ceeeeeecccceEEEEECCCCCEEEEeeCC----CeEEEeeC
Q 021319          157 WNMTGEMFFLTTG-----NGTVEVLTYPS------LR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD----SLVSLWDI  220 (314)
Q Consensus       157 ~~~~~~~~~~~~~-----~g~~~~~~~~~------~~-~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d----g~i~vwd~  220 (314)
                      |+|+++.+++...     +..++++++..      .. ....+..+...+.. .|+|+|+.|+..+.+    +.|.+||+
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~  318 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF  318 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence            9999998887754     56888888764      32 34455555555544 488888877765543    36999999


Q ss_pred             CCcE--EEEEeeeccc--CeEEEEEccCCcEEEEecCCce--EEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEE
Q 021319          221 SEML--CVRTFTKLEW--PVRTISFSHTGDYIASASEDLF--IDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       221 ~~~~--~~~~~~~~~~--~v~~~~~sp~~~~l~s~s~d~~--v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~  292 (314)
                      .++.  ..+.+..+..  .+..++|++++.++++...|+.  |.+|+..+|+.++.+.. .+.+..++++|++..++..
T Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred             CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence            7753  1233333322  5778999988899999999985  56677767877666653 4568889999998766544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.70  E-value=1.6e-14  Score=118.20  Aligned_cols=235  Identities=10%  Similarity=-0.031  Sum_probs=160.7

Q ss_pred             CEEEEEEcCCCCCEEE-EEeCCCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee
Q 021319           68 SVDQLCWDPKHADLIA-TASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR  145 (314)
Q Consensus        68 ~v~~l~~~~~~~~~l~-s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  145 (314)
                      ...++++++++ ++++ +...++.|.+||..++........ ......+++.++++++++.. ++.|.+||.........
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            56788999875 5666 557789999999765543221111 13455688999998665555 88999999866433221


Q ss_pred             e-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319          146 R-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (314)
Q Consensus       146 ~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~  224 (314)
                      . .....+..+++.+++..+++...++.+..++................+..++++++|+++++...++.|.+||.....
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            1 112457788999999988877788899998754433322222223457899999999988877778899999987765


Q ss_pred             EEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec--cCccceeEEcCCCCeeEEEecCCcccccc
Q 021319          225 CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKNKYQAD  302 (314)
Q Consensus       225 ~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~--~~~i~~v~~~~~~~~la~~~~d~~~~~~~  302 (314)
                      ...........+..++++|+|.++++...++.|.+|+....... ....  ...+.++++.|+++++++...+       
T Consensus       183 ~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~-------  254 (270)
T 1rwi_B          183 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPFTGLNTPLAVAVDSDRTVYVADRGN-------  254 (270)
T ss_dssp             EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECCCCSCSCEEEEEECTTCCEEEEEGGG-------
T ss_pred             eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eeccCCCCCceeEEECCCCCEEEEECCC-------
Confidence            43322222246789999999988888888899999998654432 2222  2458899999999877766644       


Q ss_pred             cceEEeccccC
Q 021319          303 EGVFRIYGFEN  313 (314)
Q Consensus       303 ~~~~~~~~~~~  313 (314)
                       +.+++|.+++
T Consensus       255 -~~v~~~~~~~  264 (270)
T 1rwi_B          255 -DRVVKLTSLE  264 (270)
T ss_dssp             -TEEEEECCCG
T ss_pred             -CEEEEEcCCC
Confidence             6888988754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.70  E-value=3.5e-15  Score=138.76  Aligned_cols=243  Identities=14%  Similarity=0.005  Sum_probs=158.3

Q ss_pred             cccccEEEEEECCCCCEEE-----EeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc--
Q 021319           18 GHKKKVHSVAWNCTGTKLA-----SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT--   90 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~-----s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~--   90 (314)
                      +|...+..++|||||++|+     +|+.+..|++||++++..  .....+.+..  ...++|+|++ ..|+.++.|..  
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~--~~~~~~~~~~--~~~~~wspDg-~~l~~~~~d~~~~  192 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW--SKVDVIEGGK--YATPKWTPDS-KGFYYEWLPTDPS  192 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB--CSSCCBSCCT--TCCCEECTTS-SEEEEEECCCCTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC--cCCcccCccc--ccceEEecCC-CEEEEEEecCCCC
Confidence            4566799999999999988     555667999999976431  1011121111  1578999985 57778888776  


Q ss_pred             -----------EEEEeCCCCcee--eeEEe--c-CceEEEEEccCCCEEEEEeCCC----cEEEEEccCCeEeeeeccCc
Q 021319           91 -----------VRLWDARSGKCS--QQAEL--S-GENINITYKPDGTHIAVGNRDD----ELTILDVRKFKPIHRRKFGY  150 (314)
Q Consensus        91 -----------v~iwd~~~~~~~--~~~~~--~-~~~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~  150 (314)
                                 |++|++.++...  .....  . .....+.++|||++|+.++.++    .+.+++....+...-.....
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~  272 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG  272 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC
Confidence                       999999887632  11111  1 2456789999999998877665    56666654433222122222


Q ss_pred             ceeeEEeccCCCeEEEEc---CCceEEEEeCCCCCc--eeeeeec--ccceEEEEECCCCCEEEEeeCCCeEEEeeCC-C
Q 021319          151 EVNEIAWNMTGEMFFLTT---GNGTVEVLTYPSLRP--LDTVVAH--TAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-E  222 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~--~~~~~~~--~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~-~  222 (314)
                      ......+ +++..++.+.   .++.+.+++......  ...+..+  ...+..++++ ++.++++...|+..++|.+. +
T Consensus       273 ~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~  350 (695)
T 2bkl_A          273 AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK  350 (695)
T ss_dssp             CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence            3344445 5555444443   357888898865442  2333333  3357778887 67788899999988888654 3


Q ss_pred             cEEEEEeeec-ccCeEEEEEccCCcEEE----EecCCceEEEEECCCCCe
Q 021319          223 MLCVRTFTKL-EWPVRTISFSHTGDYIA----SASEDLFIDISNVHTGRT  267 (314)
Q Consensus       223 ~~~~~~~~~~-~~~v~~~~~sp~~~~l~----s~s~d~~v~v~~~~~~~~  267 (314)
                      +..++.+..+ ...+..++++|+++.++    +....+.+++||+.+++.
T Consensus       351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            5555555443 44577788999998777    334458899999988764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.70  E-value=2e-13  Score=123.05  Aligned_cols=268  Identities=12%  Similarity=0.080  Sum_probs=184.1

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEc----CCCCCEEEEEeCCCcEEEEeC
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD----PKHADLIATASGDKTVRLWDA   96 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~~~~l~s~~~D~~v~iwd~   96 (314)
                      ..++.+.|+|||+++.+++.|+.|.+||+.......+  .++.... ....++++    |++..++++.-.+++|.++|.
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~  273 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG  273 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe--EEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence            3577999999999999999999999999851111122  2333322 35688999    576555566666799999999


Q ss_pred             CCCceeeeEEecC------------ceEEEEEccCCCEEEE-EeCCCcEEEEEccCCeEe--eeeccCcceeeEEeccCC
Q 021319           97 RSGKCSQQAELSG------------ENINITYKPDGTHIAV-GNRDDELTILDVRKFKPI--HRRKFGYEVNEIAWNMTG  161 (314)
Q Consensus        97 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~  161 (314)
                      .+.+.+.......            ....+..++++..+++ ...++.|.++|....+..  ..+..+.......|++++
T Consensus       274 ~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdg  353 (567)
T 1qks_A          274 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH  353 (567)
T ss_dssp             TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTS
T ss_pred             CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCC
Confidence            9888776654321            3345777787665554 455688999998765432  233445556788999999


Q ss_pred             CeEEEEc-CCceEEEEeCCCCCceeeeee-----cccceEEEEECCC-CCEEEEee-CCCeEEEeeCCC-------cEEE
Q 021319          162 EMFFLTT-GNGTVEVLTYPSLRPLDTVVA-----HTAGCYCIAIDPM-GRYFAVGS-ADSLVSLWDISE-------MLCV  226 (314)
Q Consensus       162 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~-----~~~~i~~i~~~~~-~~~l~t~~-~dg~i~vwd~~~-------~~~~  226 (314)
                      ++++++. .++.+.+++..+.+.+..+..     |.+....+ ++|+ +...+++. .++.|.++|..+       .+.+
T Consensus       354 r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv  432 (567)
T 1qks_A          354 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL  432 (567)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence            9887765 678999999988765544432     33222222 5787 44555554 468999999987       6677


Q ss_pred             EEeeecccCeEEEEEccCCcEEEEecC-------CceEEEEECCCC-----CeE-EEEec---------cCccceeEEcC
Q 021319          227 RTFTKLEWPVRTISFSHTGDYIASASE-------DLFIDISNVHTG-----RTV-HQIPC---------RAAMNSVEWNP  284 (314)
Q Consensus       227 ~~~~~~~~~v~~~~~sp~~~~l~s~s~-------d~~v~v~~~~~~-----~~~-~~~~~---------~~~i~~v~~~~  284 (314)
                      +++......-.-+..+|++++|.....       ...|.|+|..+.     ... ..++.         ...+..++|+|
T Consensus       433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (567)
T 1qks_A          433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK  512 (567)
T ss_dssp             EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred             EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence            777654333344789999999887663       358999999876     222 33431         34688999999


Q ss_pred             CCCeeEEE
Q 021319          285 KYNLLAYA  292 (314)
Q Consensus       285 ~~~~la~~  292 (314)
                      +|..+..+
T Consensus       513 ~G~~~~~s  520 (567)
T 1qks_A          513 DGTEVWFS  520 (567)
T ss_dssp             TSSEEEEE
T ss_pred             CCCEEEEE
Confidence            99887655

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.70  E-value=1.6e-12  Score=107.76  Aligned_cols=263  Identities=10%  Similarity=0.015  Sum_probs=184.5

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      .....+.++.++++|...++...++.|.+|+.+ .   ......+..+...+..+++++++ ++.++...++.|..+|..
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G---RIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C---ceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC
Confidence            445688999999999988888788999999865 2   23333344445678899998764 577766668899999987


Q ss_pred             CCceeeeEEe---cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-ec-cCcceeeEEeccCCCeEEEEcCCce
Q 021319           98 SGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RK-FGYEVNEIAWNMTGEMFFLTTGNGT  172 (314)
Q Consensus        98 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~g~  172 (314)
                       ++.. ....   ......+++.+++++.++...++.+..+|.. .+.... .. ....+..+++.+++..+++...++.
T Consensus        92 -g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A           92 -GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             -SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             -CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence             5543 2222   2345678889999887777768889999987 333221 11 2345778889999997777777888


Q ss_pred             EEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE-EeeecccCeEEEEEccCCcEEEE
Q 021319          173 VEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       173 ~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      +..++. ..+... ....+...+..++++++|++.++....+.|..||. ++.... .+......+.+++++|+|++.++
T Consensus       169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~  246 (300)
T 2qc5_A          169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT  246 (300)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence            988887 333221 11123456889999999988777767788999998 443322 22223446789999999998887


Q ss_pred             ecCCceEEEEECCCCCeEEEEec---cCccceeEEcCCCCeeEEE
Q 021319          251 ASEDLFIDISNVHTGRTVHQIPC---RAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~~~---~~~i~~v~~~~~~~~la~~  292 (314)
                      ...++.|..++. +++.. .+..   ...+.++++.|++++.++.
T Consensus       247 ~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          247 EWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFAL  289 (300)
T ss_dssp             ETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred             ccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEc
Confidence            777889999998 45433 3322   3468899999998866544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.69  E-value=4.6e-14  Score=118.10  Aligned_cols=244  Identities=9%  Similarity=-0.030  Sum_probs=163.4

Q ss_pred             eeecccccEEEEEECCCCCEEEE-------eeCCCcEEEeecCCCCCCceeeEEe---ecCCCCEEEEEEcCCCCCEEEE
Q 021319           15 EYTGHKKKVHSVAWNCTGTKLAS-------GSVDQTARVWHIEPHGHGKVKDIEL---RGHADSVDQLCWDPKHADLIAT   84 (314)
Q Consensus        15 ~~~gH~~~V~~v~~s~~g~~l~s-------~~~D~~v~iw~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s   84 (314)
                      .+.+......+++|+++|..+++       +..++.|.+|+.....   ......   .++...+..++++++++.++++
T Consensus        12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~   88 (314)
T 1pjx_A           12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---KTVICKPEVNGYGGIPAGCQCDRDANQLFVA   88 (314)
T ss_dssp             EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---EEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred             hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---EEEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence            34445556789999999998888       6778999999875432   222111   1245678899999873344444


Q ss_pred             EeCCCcEEEEeCCCCceeee-EEec-----CceEEEEEccCCCEEEEEeCC---------------CcEEEEEccCCeEe
Q 021319           85 ASGDKTVRLWDARSGKCSQQ-AELS-----GENINITYKPDGTHIAVGNRD---------------DELTILDVRKFKPI  143 (314)
Q Consensus        85 ~~~D~~v~iwd~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~  143 (314)
                      . .+..|.+||.. ++.... ....     .....+++.++|++.++...+               +.+..+|.. .+..
T Consensus        89 ~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~  165 (314)
T 1pjx_A           89 D-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             E-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred             E-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence            4 44579999988 665433 2111     224578899999887776554               467777765 3322


Q ss_pred             eeeccCcceeeEEec----cCCCeEEEE-cCCceEEEEeCC-CCC-----ceeeeeecc-cceEEEEECCCCCEEEEeeC
Q 021319          144 HRRKFGYEVNEIAWN----MTGEMFFLT-TGNGTVEVLTYP-SLR-----PLDTVVAHT-AGCYCIAIDPMGRYFAVGSA  211 (314)
Q Consensus       144 ~~~~~~~~~~~~~~~----~~~~~~~~~-~~~g~~~~~~~~-~~~-----~~~~~~~~~-~~i~~i~~~~~~~~l~t~~~  211 (314)
                      ...........++++    ++++.++++ ..++.+.+|+.. ..+     ....+..+. ..+..++++++|+++++...
T Consensus       166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence            222222345778888    888655444 567899999864 222     111222232 55788999999998888878


Q ss_pred             CCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEE-EEecCCceEEEEECCC
Q 021319          212 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHT  264 (314)
Q Consensus       212 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~s~d~~v~v~~~~~  264 (314)
                      ++.|.+||..+++.+..+..+...+.+++|+|++++| ++...++.|..+++..
T Consensus       246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            8899999988666655665555678999999999944 5556678899998764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=3.8e-14  Score=120.34  Aligned_cols=225  Identities=12%  Similarity=0.039  Sum_probs=144.6

Q ss_pred             ccEEEEEECCCCCEEEEeeCC---Cc--EEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC--------
Q 021319           21 KKVHSVAWNCTGTKLASGSVD---QT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG--------   87 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D---~~--v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--------   87 (314)
                      ..+..++|||||++|+.++.+   +.  |.+|+++..   ...  .+..+.. +..+.|+|++ +.|+.++.        
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g---~~~--~l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~~~~  131 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL---SSK--KILEAKN-IRSLEWNEDS-RKLLIVGFKRREDEDF  131 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT---EEE--EEEEESE-EEEEEECTTS-SEEEEEEECCCC----
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC---ceE--EEEcCCC-ccceeECCCC-CEEEEEEccCCCcCCc
Confidence            457789999999999988754   34  555666532   222  2223334 8999999986 45555542        


Q ss_pred             -------------------CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-------cEEEEEccCCe
Q 021319           88 -------------------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-------ELTILDVRKFK  141 (314)
Q Consensus        88 -------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~  141 (314)
                                         ...|.+||+.+++....+... ....+.|+|+| +++++..+.       ...+|.+...+
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~  209 (347)
T 2gop_A          132 IFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK  209 (347)
T ss_dssp             -----CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred             EEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc
Confidence                               257889999888763333323 55678899999 777775542       33444443333


Q ss_pred             EeeeeccCcceeeEEeccCCCeEEEEcCC--------ceEEEEeCCCCCceeeeeecccceEE-EEECCCCCEEEEeeCC
Q 021319          142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGN--------GTVEVLTYPSLRPLDTVVAHTAGCYC-IAIDPMGRYFAVGSAD  212 (314)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~t~~~d  212 (314)
                      ...-... ....  .++|+|+.+++...+        ..+.+++  ..+.......+...+.. +.|+ ++ ++++++.+
T Consensus       210 ~~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~  282 (347)
T 2gop_A          210 EEKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEE  282 (347)
T ss_dssp             EEEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred             eEEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence            2221111 2233  338999988776543        3677776  33332223345566775 8999 88 88999999


Q ss_pred             CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceE-EEEECCCCC
Q 021319          213 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI-DISNVHTGR  266 (314)
Q Consensus       213 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v-~v~~~~~~~  266 (314)
                      +.+++| +.+++... +..+...+.+++|+|  .++++++.++.. .+|.+. ++
T Consensus       283 ~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          283 GSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             TEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             CcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence            999999 87555433 334466789999999  677777777654 667665 44

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.68  E-value=1e-14  Score=135.56  Aligned_cols=261  Identities=11%  Similarity=0.068  Sum_probs=168.7

Q ss_pred             CCCCCEEEEeeCCC---cEEEeecCCCCCCceeeEE----eecCCCCEEEEEEcCCCCCEEE-----EEeCCCcEEEEeC
Q 021319           29 NCTGTKLASGSVDQ---TARVWHIEPHGHGKVKDIE----LRGHADSVDQLCWDPKHADLIA-----TASGDKTVRLWDA   96 (314)
Q Consensus        29 s~~g~~l~s~~~D~---~v~iw~~~~~~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~l~-----s~~~D~~v~iwd~   96 (314)
                      +|+|++++-...++   .-.||..+...........    -.+|...+..++|+|++ ++|+     +|+.+..|++||+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEET
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEEC
Confidence            47899887776554   4567765432222111111    12455578899999986 4665     3444578999999


Q ss_pred             CCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCc-------------EEEEEccCCe----Eeeeec-cCcceeeEEe
Q 021319           97 RSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDE-------------LTILDVRKFK----PIHRRK-FGYEVNEIAW  157 (314)
Q Consensus        97 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~-------------i~i~d~~~~~----~~~~~~-~~~~~~~~~~  157 (314)
                      .+++.......... ...++|+|||+.|+.++.+..             |.+|++.+.+    .+.... ....+..+.|
T Consensus       155 ~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          155 DSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             TTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred             CCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence            99876411112221 156889999999999888776             9999987654    222221 1235678899


Q ss_pred             ccCCCeEEEEcCCc----eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee---CCCeEEEeeCCCcEE---EE
Q 021319          158 NMTGEMFFLTTGNG----TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLC---VR  227 (314)
Q Consensus       158 ~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~---~dg~i~vwd~~~~~~---~~  227 (314)
                      +|+|+.+++...++    .+++++....+ ...+..+........+ ++|++++...   .++.|.+||+.++..   ..
T Consensus       235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~  312 (695)
T 2bkl_A          235 SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKE  312 (695)
T ss_dssp             CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEE
T ss_pred             CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeE
Confidence            99999888776554    55666543333 3445555555555555 5666444443   257899999976542   22


Q ss_pred             Eeeec-ccCeEEEEEccCCcEEEEecCCceEEEEECC-CCCeEEEEec--cCccceeEEcCCCCeeEEEe
Q 021319          228 TFTKL-EWPVRTISFSHTGDYIASASEDLFIDISNVH-TGRTVHQIPC--RAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       228 ~~~~~-~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~-~~~~~~~~~~--~~~i~~v~~~~~~~~la~~~  293 (314)
                      .+..+ ...+..++|+ ++.++++...|+..++|.+. +++.++.+..  .+.+..++++|++..++...
T Consensus       313 l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  381 (695)
T 2bkl_A          313 IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF  381 (695)
T ss_dssp             EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred             EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence            23222 4457888888 78899999999988888664 4666655542  45688999999987776443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.68  E-value=2.2e-13  Score=112.06  Aligned_cols=233  Identities=12%  Similarity=0.078  Sum_probs=171.0

Q ss_pred             CCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec
Q 021319           30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS  108 (314)
Q Consensus        30 ~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~  108 (314)
                      ..++.|++++.|+.|++||.+++.    ...++..+. ..+.++.+.|++ ++++  +.++.|..||. +++.+......
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~----~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKE----IVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTE----EEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECC
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCe----EEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCC
Confidence            356889999999999999986532    223444444 467888999975 6777  45789999999 78877776653


Q ss_pred             --CceEEEEEccCCCEEEEEeC-CCcEEEEEccCCeEeeeeccC-------cceeeEEeccCCCeEEEEcCCceEEEEeC
Q 021319          109 --GENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFG-------YEVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (314)
Q Consensus       109 --~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (314)
                        .....+.+.++|+.+++.+. ++.+..+|. ..+.+......       .....+...++++++++...++.+..|+.
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~  153 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP  153 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC
Confidence              24456788999999999887 777877775 55555443321       13445677889999999999999999998


Q ss_pred             CCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc------CeEEEEEccCCcEEEEec
Q 021319          179 PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW------PVRTISFSHTGDYIASAS  252 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~------~v~~~~~sp~~~~l~s~s  252 (314)
                      . .+.+.++... ..+..+...++|+++++++.++.|..+|..+++.+.++...+.      .+..++..++|.++++..
T Consensus       154 ~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          154 N-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             T-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             C-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            7 7766666543 4567788899999999998888999999998998888764321      267788889999988874


Q ss_pred             CC--------ceEEEEEC-CCCCeEEEEec
Q 021319          253 ED--------LFIDISNV-HTGRTVHQIPC  273 (314)
Q Consensus       253 ~d--------~~v~v~~~-~~~~~~~~~~~  273 (314)
                      ..        +..+++++ .+|+.+.++..
T Consensus       232 ~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          232 QGHDREAGKGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             CTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred             cCccccccccCCceEEEECCCCCEEEEecC
Confidence            21        12345555 47777777653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=4e-15  Score=128.50  Aligned_cols=233  Identities=11%  Similarity=0.062  Sum_probs=147.9

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEE-------------------EEEcCCCCCEEEEE
Q 021319           25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ-------------------LCWDPKHADLIATA   85 (314)
Q Consensus        25 ~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~-------------------l~~~~~~~~~l~s~   85 (314)
                      .+.|+|||++|+.++.++.|++|+++...   .. .....+......                   ..|+|++. .++..
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~---~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~  159 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLE---EQ-VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFA  159 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCC---EE-EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCC---cE-EEEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeee
Confidence            37899999999999999999999986532   11 112223222212                   23455543 33322


Q ss_pred             -----eCCCcEEEEeCCCCceeeeEEecCceEEEEEcc-CCCEEEEEeCC------CcEEEEEccCCeEeeeecc--Ccc
Q 021319           86 -----SGDKTVRLWDARSGKCSQQAELSGENINITYKP-DGTHIAVGNRD------DELTILDVRKFKPIHRRKF--GYE  151 (314)
Q Consensus        86 -----~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~--~~~  151 (314)
                           ..+..|.+||+.+++.............+.|+| +++.|+..+.+      ..|.++|+...+.......  ...
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~  239 (396)
T 3c5m_A          160 EFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGES  239 (396)
T ss_dssp             HHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEE
T ss_pred             eeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcc
Confidence                 466789999999887665554455566789999 78877765543      3588888765432222221  234


Q ss_pred             eeeEEeccCCCeEEEEcCC-----ceEEEEeCCCCCceeeeeecccceEEEEECC-CCCEEEEee---------------
Q 021319          152 VNEIAWNMTGEMFFLTTGN-----GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGS---------------  210 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~t~~---------------  210 (314)
                      +..+.|+|+++.+++...+     +.+.+|+....+... +.... ... +.|+| +|++++.++               
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~  316 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNI  316 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECC-SEE-EEEECSSSSEEEEEECCC----------CC
T ss_pred             ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCC-CCC-CCccCCCCceEEEecCCcceeecccccccc
Confidence            6778999999977666432     448999886654322 22111 223 88999 999888754               


Q ss_pred             -CCCeEEEeeCCCcEEEEEeeeccc-----------CeEEEEEccCCcEEEEecC-Cce--EEEEECCCCC
Q 021319          211 -ADSLVSLWDISEMLCVRTFTKLEW-----------PVRTISFSHTGDYIASASE-DLF--IDISNVHTGR  266 (314)
Q Consensus       211 -~dg~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~sp~~~~l~s~s~-d~~--v~v~~~~~~~  266 (314)
                       .+..|.+||+.++... .+..+..           .+..++|+|+|+.|+.++. ++.  +.+.+..++.
T Consensus       317 ~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          317 ENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             CCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             CCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence             3468999999876542 3333333           2456789999998887765 444  4444554544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.65  E-value=1.5e-12  Score=108.25  Aligned_cols=225  Identities=12%  Similarity=0.103  Sum_probs=155.7

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR  146 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  146 (314)
                      .-.....|+|.++.++++...++.|..||..++.. ........+..+++.+++++++. . +..|.++|..+.+.....
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            33467889987677888888899999999987765 33445566778999999995554 3 568999998766543221


Q ss_pred             c-----cCcceeeEEeccCCCeEEEEcCC---------ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-EeeC
Q 021319          147 K-----FGYEVNEIAWNMTGEMFFLTTGN---------GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGSA  211 (314)
Q Consensus       147 ~-----~~~~~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~~~  211 (314)
                      .     ....++.+++.++|..++.....         ....+|.+........+..+....+.++|+|+++.|+ +.+.
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~  169 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCC
Confidence            1     12346789999999977755321         2233444332222333334445578999999998764 5555


Q ss_pred             CCeEEEeeC--CCcEE-----EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc-CccceeEEc
Q 021319          212 DSLVSLWDI--SEMLC-----VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWN  283 (314)
Q Consensus       212 dg~i~vwd~--~~~~~-----~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~-~~i~~v~~~  283 (314)
                      ++.|..||+  .++..     ...+.........++++++|.+.++...++.|.+||..+|+.+..+... ..+++++|.
T Consensus       170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence            789999987  34432     1222223345788999999998888888889999999999998887654 578999998


Q ss_pred             -CCCCeeEEEec
Q 021319          284 -PKYNLLAYAGD  294 (314)
Q Consensus       284 -~~~~~la~~~~  294 (314)
                       |++..|..++.
T Consensus       250 g~d~~~L~vt~~  261 (297)
T 3g4e_A          250 GKNYSEMYVTCA  261 (297)
T ss_dssp             SGGGCEEEEEEB
T ss_pred             CCCCCEEEEEcC
Confidence             88776644443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=7.9e-13  Score=110.50  Aligned_cols=226  Identities=12%  Similarity=0.120  Sum_probs=153.5

Q ss_pred             ecCCCCEEEEEEcCCCCCEEEE-------EeCCCcEEEEeCCCCceeeeEE-----ecCceEEEEEccC-CCEEEEEeCC
Q 021319           63 RGHADSVDQLCWDPKHADLIAT-------ASGDKTVRLWDARSGKCSQQAE-----LSGENINITYKPD-GTHIAVGNRD  129 (314)
Q Consensus        63 ~~h~~~v~~l~~~~~~~~~l~s-------~~~D~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~l~~~~~d  129 (314)
                      ...-....+++|++++ .++++       +..++.|.+||..+++......     ....+..+++.++ +++++ +...
T Consensus        14 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~   91 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMR   91 (314)
T ss_dssp             ECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETT
T ss_pred             hccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECC
Confidence            3344556789999764 67766       5778999999988877543322     2345677889999 65444 4445


Q ss_pred             CcEEEEEccCCeEeee-ec-----cCcceeeEEeccCCCeEEEEcCC---------------ceEEEEeCCCCCceeeee
Q 021319          130 DELTILDVRKFKPIHR-RK-----FGYEVNEIAWNMTGEMFFLTTGN---------------GTVEVLTYPSLRPLDTVV  188 (314)
Q Consensus       130 ~~i~i~d~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~---------------g~~~~~~~~~~~~~~~~~  188 (314)
                      ..+.+||.. .+.... ..     ....+..+++.+++..+++...+               +.+..++.. .+ ...+.
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~  168 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVD  168 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEec
Confidence            579999987 443322 11     11346789999999888777654               566666654 22 23333


Q ss_pred             ecccceEEEEEC----CCCCEEEEe-eCCCeEEEeeCC-CcEE-----EEEeeecc-cCeEEEEEccCCcEEEEecCCce
Q 021319          189 AHTAGCYCIAID----PMGRYFAVG-SADSLVSLWDIS-EMLC-----VRTFTKLE-WPVRTISFSHTGDYIASASEDLF  256 (314)
Q Consensus       189 ~~~~~i~~i~~~----~~~~~l~t~-~~dg~i~vwd~~-~~~~-----~~~~~~~~-~~v~~~~~sp~~~~l~s~s~d~~  256 (314)
                      .+...+..++++    |+++.+..+ ..++.|.+||.. ++..     ...+..+. ..+..++++++|.++++...++.
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence            344557889999    999765544 567899999976 3432     22222222 45788999999999998888899


Q ss_pred             EEEEECCCCCeEEEEecc-CccceeEEcCCCCeeEEEe
Q 021319          257 IDISNVHTGRTVHQIPCR-AAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       257 v~v~~~~~~~~~~~~~~~-~~i~~v~~~~~~~~la~~~  293 (314)
                      |.+||..+++.+..+... ..+.+++|+|+++.|..++
T Consensus       249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe
Confidence            999999877776666543 5789999999998554444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.64  E-value=4e-12  Score=105.26  Aligned_cols=244  Identities=8%  Similarity=0.002  Sum_probs=167.8

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEE--ecCceEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVR  138 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (314)
                      .+..+...+.++++++++ .+.++...++.|.+||.. +.......  .......+++.+++...++...++.+..||..
T Consensus         9 ~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKG-KVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             ECCSSSCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             cCCCcCCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            344555678999999875 566666668899999988 55432221  12456678899999887777768889999976


Q ss_pred             CCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEeeCCCeEE
Q 021319          139 KFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVS  216 (314)
Q Consensus       139 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~  216 (314)
                      ......... ....+..+++.+++..+++...++.+..++. ..+... ........+..+++++++++.++...++.|.
T Consensus        87 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           87 GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            322111111 2345778889999988888878889998887 332211 1122345689999999998888777778999


Q ss_pred             EeeCCCcEEEEE-eeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec---cCccceeEEcCCCCeeEEE
Q 021319          217 LWDISEMLCVRT-FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC---RAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       217 vwd~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~---~~~i~~v~~~~~~~~la~~  292 (314)
                      .||. +++.... .......+..++++|+|.+.++...++.|.+++. +++... +..   ...+.++++.|+++++++.
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEec
Confidence            9998 5544332 2223345789999999998888777889999999 766443 322   2468899999999877665


Q ss_pred             ecCCcccccc-cceEEecc
Q 021319          293 GDDKNKYQAD-EGVFRIYG  310 (314)
Q Consensus       293 ~~d~~~~~~~-~~~~~~~~  310 (314)
                      ..+..++.++ .|+++.|.
T Consensus       243 ~~~~~i~~~d~~g~~~~~~  261 (299)
T 2z2n_A          243 WGANKIGRLTSNNIIEEYP  261 (299)
T ss_dssp             TTTTEEEEEETTTEEEEEE
T ss_pred             cCCceEEEECCCCceEEEe
Confidence            4555554443 45665554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.64  E-value=4.2e-13  Score=114.25  Aligned_cols=254  Identities=14%  Similarity=0.082  Sum_probs=165.3

Q ss_pred             EEECCCCCEEEEee----------CCCcEEEeecCCCCCCceeeEEeec--C---CCCEEEEEEcCCCCCEEEEEeC-CC
Q 021319           26 VAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRG--H---ADSVDQLCWDPKHADLIATASG-DK   89 (314)
Q Consensus        26 v~~s~~g~~l~s~~----------~D~~v~iw~~~~~~~~~~~~~~~~~--h---~~~v~~l~~~~~~~~~l~s~~~-D~   89 (314)
                      +.++|||+++..+.          .++.|.+||..+..  .+..+.+..  +   ......+.++|++..++++... ++
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~  160 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  160 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence            99999999877665          36789999987642  223333321  0   1234568899986544444333 68


Q ss_pred             cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccC-CeEeeeeccC-----cce-eeEEec-cCC
Q 021319           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRRKFG-----YEV-NEIAWN-MTG  161 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~-----~~~-~~~~~~-~~~  161 (314)
                      +|.++|..+++....+...+.  ...+....+.+++.+.||++.+.++.. .+........     .++ ....|. +++
T Consensus       161 ~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          161 AVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             eEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            999999999998887765442  111222334455556667766666654 3322111100     011 123453 455


Q ss_pred             CeEEEEcCCceEEEEeCCCCCc--eeeee----------ecccceEEEEECCCCCEEEEeeC----------CCeEEEee
Q 021319          162 EMFFLTTGNGTVEVLTYPSLRP--LDTVV----------AHTAGCYCIAIDPMGRYFAVGSA----------DSLVSLWD  219 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~--~~~~~----------~~~~~i~~i~~~~~~~~l~t~~~----------dg~i~vwd  219 (314)
                      ..++ .+.+|++++++......  ...+.          -.......++++++++.++....          ...|.+.|
T Consensus       239 ~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD  317 (386)
T 3sjl_D          239 RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  317 (386)
T ss_dssp             EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence            4444 55579999999854431  22221          01233446788999888776643          24799999


Q ss_pred             CCCcEEEEEeeecccCeEEEEEccCCc-EEEEe-cCCceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319          220 ISEMLCVRTFTKLEWPVRTISFSHTGD-YIASA-SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       220 ~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~-s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~  285 (314)
                      +.+.+.++++... ..+..|+++||++ +|++. ..++.|.|+|..+++.+..++..+.-+.+.+++|
T Consensus       318 ~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          318 AKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             TTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             CCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            9999998887543 3678899999997 66665 5589999999999999999988888888888887

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.63  E-value=5e-13  Score=113.74  Aligned_cols=269  Identities=12%  Similarity=0.052  Sum_probs=175.9

Q ss_pred             EECCCCCEEEEeeC-----CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe---------CCCcEE
Q 021319           27 AWNCTGTKLASGSV-----DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVR   92 (314)
Q Consensus        27 ~~s~~g~~l~s~~~-----D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~D~~v~   92 (314)
                      ...|+++.+.....     ++.|.+.|..+..   +. ..+..-..+ . +.++|++..+.++..         .++.|.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~---v~-~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR---VI-GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE---EE-EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe---EE-EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence            45688988777654     6789999887532   22 233333334 4 999998765555442         467899


Q ss_pred             EEeCCCCceeeeEEecC--------ceEEEEEccCCCEEEEEeC--CCcEEEEEccCCeEeeeeccCcceeeEEeccCCC
Q 021319           93 LWDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      +||..+.+.........        ....+.++|||++++++..  ++.+.++|+.+.+.+.++..+..  ...+.....
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~  190 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPD  190 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETT
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCc
Confidence            99999999887776532        3456899999999998864  68899999999998887765321  222333345


Q ss_pred             eEEEEcCCceEEEEeCCC-CCceeeeeec----ccce-EEEEE-CCCCCEEEEeeCCCeEEEeeCCCc--EEEEEeee--
Q 021319          163 MFFLTTGNGTVEVLTYPS-LRPLDTVVAH----TAGC-YCIAI-DPMGRYFAVGSADSLVSLWDISEM--LCVRTFTK--  231 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~----~~~i-~~i~~-~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~--  231 (314)
                      .++..+.+|.+.++++.. .+.......+    ...+ ....| .++|++++.. .+|.|.+.|+...  +.++.+..  
T Consensus       191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs-~~g~V~v~d~~~~~~~v~~~~~~~~  269 (386)
T 3sjl_D          191 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT-YTGKIHQIDLSSGDAKFLPAVEALT  269 (386)
T ss_dssp             EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB-TTSEEEEEECTTSSCEECCCEESSC
T ss_pred             eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEe-CCCEEEEEECCCCcceeecceeccc
Confidence            556666777777777654 2321111000    1111 12345 4688766644 4799999999654  33333320  


Q ss_pred             --------cccCeEEEEEccCCcEEEEecC----------CceEEEEECCCCCeEEEEeccCccceeEEcCCCC-eeEEE
Q 021319          232 --------LEWPVRTISFSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYA  292 (314)
Q Consensus       232 --------~~~~v~~~~~sp~~~~l~s~s~----------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-~la~~  292 (314)
                              .......++++|+++.++.+..          ...|.+.|+.+++.+..++...++.+++++|+++ +|.++
T Consensus       270 ~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~t  349 (386)
T 3sjl_D          270 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL  349 (386)
T ss_dssp             HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEE
T ss_pred             cccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEE
Confidence                    0112345778999988887642          2579999999999999998877899999999996 55554


Q ss_pred             ecCCcccccccceEEeccc
Q 021319          293 GDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       293 ~~d~~~~~~~~~~~~~~~~  311 (314)
                      ..       .+|++-|+|.
T Consensus       350 n~-------~~~~VsViD~  361 (386)
T 3sjl_D          350 ST-------GDKTLYIHDA  361 (386)
T ss_dssp             ET-------TTTEEEEEET
T ss_pred             cC-------CCCeEEEEEC
Confidence            43       1345556654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.62  E-value=8.1e-12  Score=107.15  Aligned_cols=267  Identities=11%  Similarity=-0.015  Sum_probs=171.4

Q ss_pred             EECCCCCEEEEeeC--CC---cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe----------CCCcE
Q 021319           27 AWNCTGTKLASGSV--DQ---TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS----------GDKTV   91 (314)
Q Consensus        27 ~~s~~g~~l~s~~~--D~---~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~D~~v   91 (314)
                      ...|+++++..+..  ..   +|.++|..+..   .. ..++.-..+  .+.++|++. .++.+.          .++.|
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~---~~-~~i~~g~~p--~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v   99 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGS---IL-GHVNGGFLP--NPVAAHSGS-EFALASTSFSRIAKGKRTDYV   99 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCe---EE-EEecCCCCC--CeEECCCCC-EEEEEeccccccccCCCCCeE
Confidence            44578887666643  33   78899987532   22 233332333  889999865 444443          36789


Q ss_pred             EEEeCCCCceeeeEEec--------CceEEEEEccCCCEEEEEeC--CCcEEEEEccCCeEeee-eccCcceeeEEeccC
Q 021319           92 RLWDARSGKCSQQAELS--------GENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHR-RKFGYEVNEIAWNMT  160 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~  160 (314)
                      .+||..+.+........        .....+.++|||++|+++..  ++.|.++| .+.+.+.. +..+..   +.+.+.
T Consensus       100 ~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~  175 (373)
T 2mad_H          100 EVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPG  175 (373)
T ss_pred             EEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeC
Confidence            99999888777665543        23446889999999998874  47899999 88887766 554322   333444


Q ss_pred             C-CeEEEEcCCceEEEEeCCCCCceeeee-----ecccce-EEEEECCCCCEEEEeeCCCeEEEeeCCCc--EEEEEeee
Q 021319          161 G-EMFFLTTGNGTVEVLTYPSLRPLDTVV-----AHTAGC-YCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTK  231 (314)
Q Consensus       161 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~i-~~i~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~  231 (314)
                      + ..++..+.+|.+.+++. ..+......     .....+ ....+.+++..++..+.++.+.+.|+...  ..+..+..
T Consensus       176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~  254 (373)
T 2mad_H          176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeee
Confidence            4 45566677888888888 554432211     111111 22345555544443346788999998654  22333221


Q ss_pred             c----------ccCeEEEEEccCCcEEEEecC----------CceEEEEECCCCCeEEEEeccCccceeEEcCCCC-eeE
Q 021319          232 L----------EWPVRTISFSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLA  290 (314)
Q Consensus       232 ~----------~~~v~~~~~sp~~~~l~s~s~----------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-~la  290 (314)
                      .          ......++++|+++.+..+..          ++.|.+.|..+++.+..++.......++|+|+++ .+.
T Consensus       255 ~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~  334 (373)
T 2mad_H          255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLY  334 (373)
T ss_pred             cCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEE
Confidence            1          122344789999988777643          3579999999999999998777899999999999 555


Q ss_pred             EEecCCcccccccceEEecccc
Q 021319          291 YAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       291 ~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +++..       ++++-||+.+
T Consensus       335 v~~~~-------~~~V~ViD~~  349 (373)
T 2mad_H          335 ALSAG-------TEVLHIYDAG  349 (373)
T ss_pred             EEcCC-------CCeEEEEECC
Confidence            55521       2566666653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.62  E-value=6.1e-13  Score=124.52  Aligned_cols=260  Identities=11%  Similarity=0.082  Sum_probs=163.6

Q ss_pred             CCCCCEEEEeeCCCc---EEEeecCCC---CCCceeeE----EeecCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEE
Q 021319           29 NCTGTKLASGSVDQT---ARVWHIEPH---GHGKVKDI----ELRGHADSVDQLCWDPKHADLIATASGD-----KTVRL   93 (314)
Q Consensus        29 s~~g~~l~s~~~D~~---v~iw~~~~~---~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~l~s~~~D-----~~v~i   93 (314)
                      +|+|++++-...++.   -.+|..+..   ........    ...+|...+..++|+|++. +|+.++.+     ..|++
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR-LLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS-EEEEEEEETTCSEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEE
Confidence            389998877665543   667866532   21111110    1123444678899999864 55554433     45999


Q ss_pred             EeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCc--------------EEEEEccCCe----Eeeeecc-Ccceee
Q 021319           94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE--------------LTILDVRKFK----PIHRRKF-GYEVNE  154 (314)
Q Consensus        94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~--------------i~i~d~~~~~----~~~~~~~-~~~~~~  154 (314)
                      ||+.+++.............++|+|| +.|+.+..++.              |.+|++.+.+    .+..... ......
T Consensus       194 ~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          194 VGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             EETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             EECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            99999886543211111235789999 98888876654              7888886553    2222111 123678


Q ss_pred             EEeccCCCeEEEEcCC-----ceEEEEeCCCC--CceeeeeecccceEEEEECCCCCEEEEeeCC----CeEEEeeCCCc
Q 021319          155 IAWNMTGEMFFLTTGN-----GTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD----SLVSLWDISEM  223 (314)
Q Consensus       155 ~~~~~~~~~~~~~~~~-----g~~~~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d----g~i~vwd~~~~  223 (314)
                      +.|+|+|+.+++...+     ..+++++....  +....+..+....... ++|+|+.|+..+.+    +.|.+||+.++
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            8999999988877643     47888887654  3134444444444444 34888888776653    45999999874


Q ss_pred             --EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECC-CCCeEEEEe--ccCccceeEEcCCCCeeEEE
Q 021319          224 --LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH-TGRTVHQIP--CRAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       224 --~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~-~~~~~~~~~--~~~~i~~v~~~~~~~~la~~  292 (314)
                        .....+..+...+..++++ ++.++++...|+..++|... +++.++.+.  ..+.+..++|+|++..|+..
T Consensus       352 ~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~  424 (741)
T 1yr2_A          352 TPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS  424 (741)
T ss_dssp             SCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred             ccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence              3333344444456677887 67788899999987777654 466666654  24568899999998766543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.60  E-value=3.1e-13  Score=126.55  Aligned_cols=239  Identities=12%  Similarity=0.043  Sum_probs=151.7

Q ss_pred             ccccEEEEEECCCCCEEEEeeCC-----CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc---
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVD-----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT---   90 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D-----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~---   90 (314)
                      |...+..++|||||++|+.++.+     ..|++||++++.   .....+  +...+..++|+|+ . .|+.++.|..   
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~---~~~~~~--~~~~~~~~~wspD-~-~l~~~~~~~~~~~  233 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK---PLADEL--KWVKFSGLAWLGN-D-ALLYSRFAEPKEG  233 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC---EEEEEE--EEEESCCCEESTT-S-EEEEEECCCC---
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC---CCCccC--CCceeccEEEECC-C-EEEEEEecCcccc
Confidence            44578899999999999887654     469999997643   221111  1112356899997 4 5556666544   


Q ss_pred             -----------EEEEeCCCCcee--eeEEecC---ceEEEEEccCCCEEEEEeCCC-----cEEEEEccCCeE--eeeec
Q 021319           91 -----------VRLWDARSGKCS--QQAELSG---ENINITYKPDGTHIAVGNRDD-----ELTILDVRKFKP--IHRRK  147 (314)
Q Consensus        91 -----------v~iwd~~~~~~~--~~~~~~~---~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~--~~~~~  147 (314)
                                 |.+|++.++...  .......   ....+.|+|||++|+....++     .+.++|+.....  .....
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~  313 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI  313 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred             cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence                       889998776532  1122211   256788999999998777543     799999876521  12221


Q ss_pred             -cCcceeeEEeccCCCeEEEEcC----CceEEEEeCCCC-Cceeee-eecccceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319          148 -FGYEVNEIAWNMTGEMFFLTTG----NGTVEVLTYPSL-RPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (314)
Q Consensus       148 -~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~-~~~~~~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~  220 (314)
                       ........ +.++++.+++.+.    ++.+.+++.... .....+ ..+...+..++++ ++.++++...|+..++|.+
T Consensus       314 ~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          314 PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence             11122222 3478887777654    456888887653 122233 3344446677777 5677888888998777755


Q ss_pred             C-CcEEEEEeeec-ccCeEEEEEccCCcEEE----EecCCceEEEEECCCCC
Q 021319          221 S-EMLCVRTFTKL-EWPVRTISFSHTGDYIA----SASEDLFIDISNVHTGR  266 (314)
Q Consensus       221 ~-~~~~~~~~~~~-~~~v~~~~~sp~~~~l~----s~s~d~~v~v~~~~~~~  266 (314)
                      . ++..++.+... ...+..++++|+++.|+    +....+.+++||+.+++
T Consensus       392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            4 45555555432 45688899999988666    33345889999998875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.56  E-value=3.6e-11  Score=101.31  Aligned_cols=220  Identities=11%  Similarity=0.060  Sum_probs=150.0

Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc
Q 021319           69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF  148 (314)
Q Consensus        69 v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  148 (314)
                      .....|+|+++.++++...++.|..||..+++.. .......+..+.+.+++++++.. . ..|.+||..+.+.......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECS
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeC
Confidence            4567899876677788878899999999877543 33344567788899999877654 3 4599999876554322111


Q ss_pred             -----CcceeeEEeccCCCeEEEEcC------CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEe-eCCCeEE
Q 021319          149 -----GYEVNEIAWNMTGEMFFLTTG------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG-SADSLVS  216 (314)
Q Consensus       149 -----~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~  216 (314)
                           ...+..+.+++++..++....      .+.+..++  .. .+..+..+......++|+|+++.++.+ +.++.|.
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~  204 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM  204 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence                 134778899999987765542      35566665  22 222333333457889999999876544 4568999


Q ss_pred             EeeCC--Cc-E-----EEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc-CccceeEEc-CCC
Q 021319          217 LWDIS--EM-L-----CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWN-PKY  286 (314)
Q Consensus       217 vwd~~--~~-~-----~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~-~~i~~v~~~-~~~  286 (314)
                      +||+.  ++ .     ....+.........++++++|.+.++...++.|.+|+. +++.+..+... ..+++++|. |++
T Consensus       205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~  283 (326)
T 2ghs_A          205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDA  283 (326)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTS
T ss_pred             EEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCC
Confidence            99985  44 2     12222222345678999999998887777788999998 67777766543 368999998 887


Q ss_pred             CeeEEEecC
Q 021319          287 NLLAYAGDD  295 (314)
Q Consensus       287 ~~la~~~~d  295 (314)
                      ..|..++..
T Consensus       284 ~~L~vt~~~  292 (326)
T 2ghs_A          284 SRLLVTSAR  292 (326)
T ss_dssp             CEEEEEEBC
T ss_pred             CEEEEEecC
Confidence            766544443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.56  E-value=1.2e-11  Score=107.38  Aligned_cols=232  Identities=9%  Similarity=0.013  Sum_probs=156.8

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC--cEEEEEccCCeEee
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD--ELTILDVRKFKPIH  144 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~  144 (314)
                      .....++|++++ +++++...++.|++||..++............. ++++++++.|+++..++  .|.+++........
T Consensus       131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            356789999875 577777778999999998877655443333333 88999999999888766  68888876543222


Q ss_pred             ee----c-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee-----eecccc-eE-EEEECCC-CCEEEEeeC
Q 021319          145 RR----K-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-----VAHTAG-CY-CIAIDPM-GRYFAVGSA  211 (314)
Q Consensus       145 ~~----~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~-i~-~i~~~~~-~~~l~t~~~  211 (314)
                      ..    . ....+..++++|.+..++++..++.+..|+...... ..+     .++... +. .++|+|+ +.++++-..
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            22    1 334567889999555555577788899998765432 122     111111 23 9999995 666666667


Q ss_pred             CCeEEEeeCCCcEEEEEeeecc---------------cCeEEEEEccCCcEEEEec-CCceEEEEECCCCCeEEEEec--
Q 021319          212 DSLVSLWDISEMLCVRTFTKLE---------------WPVRTISFSHTGDYIASAS-EDLFIDISNVHTGRTVHQIPC--  273 (314)
Q Consensus       212 dg~i~vwd~~~~~~~~~~~~~~---------------~~v~~~~~sp~~~~l~s~s-~d~~v~v~~~~~~~~~~~~~~--  273 (314)
                      ++.|+.|+....  +..+.+..               .....++++|+|+++++-+ .+..|+.|+..+++.......  
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~  365 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVD  365 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTT
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCC
Confidence            789999997644  22332221               2368899999999888888 899999999877765433322  


Q ss_pred             -------------cCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          274 -------------RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       274 -------------~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                                   -.....|++.|++.++++-..+        +.+|.+.+
T Consensus       366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n--------~~Ir~i~~  408 (409)
T 3hrp_A          366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG--------KAIRKYAV  408 (409)
T ss_dssp             CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT--------CEEEEEEE
T ss_pred             CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC--------CeEEEEEe
Confidence                         1246789999997766654433        45665554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.55  E-value=2.5e-11  Score=105.50  Aligned_cols=232  Identities=13%  Similarity=0.100  Sum_probs=157.0

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEeCCC
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK--TVRLWDARS   98 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~--~v~iwd~~~   98 (314)
                      .....|+|+++++++++...++.|++|+.+..   .+... ... ..... ++|++++ +.|+.+..++  .|.+++...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---~~~~~-~~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---KVTTV-HPG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---EEEEE-EET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---EEEEe-ecc-CCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCC
Confidence            46889999999998888888899999998642   22221 222 22233 8899875 5666777655  788888876


Q ss_pred             CceeeeE----E-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee----eccC--ccee-eEEeccC-CCeEE
Q 021319           99 GKCSQQA----E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR----RKFG--YEVN-EIAWNMT-GEMFF  165 (314)
Q Consensus        99 ~~~~~~~----~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~--~~~~-~~~~~~~-~~~~~  165 (314)
                      +......    . .......++++|++..|+++..++.|..||+........    ....  .... .++++|. +.+++
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            5543322    1 123345688899656666677788899999876542211    1111  1112 8999995 66666


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecc---------------cceEEEEECCCCCEEEEee-CCCeEEEeeCCCcEEEEEe
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHT---------------AGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~---------------~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~~~~~~~  229 (314)
                      +-..++.|..++....  ...+.++.               ..+..++++++|+++++-. .++.|+.||+.++.. .++
T Consensus       284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~  360 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STV  360 (409)
T ss_dssp             EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEE
T ss_pred             EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEE
Confidence            6677889998886543  33333332               3478999999999777777 788999999877764 333


Q ss_pred             eec---------------ccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          230 TKL---------------EWPVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       230 ~~~---------------~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      .+.               -.....++++|++.++++-..+..|+.+++
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            332               124788999999988888888888877654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.55  E-value=3.2e-11  Score=100.60  Aligned_cols=227  Identities=12%  Similarity=0.085  Sum_probs=151.8

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK  141 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  141 (314)
                      +...........|+|++..++++...++.|..|+. ++..............+++.++|+++++...++.|..++.. .+
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence            34455567788999986557888888999999998 45533222334456678999999977766666789999875 32


Q ss_pred             Eeee--ecc---CcceeeEEeccCCCeEEE----EcC-------------CceEEEEeCCCCCceeeeeecccceEEEEE
Q 021319          142 PIHR--RKF---GYEVNEIAWNMTGEMFFL----TTG-------------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAI  199 (314)
Q Consensus       142 ~~~~--~~~---~~~~~~~~~~~~~~~~~~----~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~  199 (314)
                      ...-  ...   ...++.+++.++|..+++    +..             .+.+..++....+.. .+. ....++.++|
T Consensus       118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~-~~~-~~~~p~gl~~  195 (305)
T 3dr2_A          118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ-RMA-DLDHPNGLAF  195 (305)
T ss_dssp             EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-EEE-EESSEEEEEE
T ss_pred             EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-EEe-cCCCCcceEE
Confidence            2111  111   123567899999988775    221             245666665444332 222 3455788999


Q ss_pred             CCCCCEEEEeeCC------CeEEEeeCCCcEEE--EEee-ecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE
Q 021319          200 DPMGRYFAVGSAD------SLVSLWDISEMLCV--RTFT-KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ  270 (314)
Q Consensus       200 ~~~~~~l~t~~~d------g~i~vwd~~~~~~~--~~~~-~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~  270 (314)
                      +|+++.|+.+...      +.|.+||+......  ..+. ........++++++|++.++. .++ |.+|+. .++.+..
T Consensus       196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~  272 (305)
T 3dr2_A          196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGH  272 (305)
T ss_dssp             CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEE
T ss_pred             cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEE
Confidence            9999988777665      68999998754311  1111 112334568999999955544 554 999998 6777877


Q ss_pred             EeccCccceeEEcCCCCeeEEEecC
Q 021319          271 IPCRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       271 ~~~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      +.....+.+++|.|+++.|..++.+
T Consensus       273 ~~~~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          273 IPTPGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             EECSSCCCEEEECTTSCEEEEEETT
T ss_pred             EECCCceeEEEEeCCCCEEEEEcCC
Confidence            7665578999999998877766654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.54  E-value=7.8e-12  Score=108.23  Aligned_cols=267  Identities=10%  Similarity=0.022  Sum_probs=172.4

Q ss_pred             CCCCEEEEeeC-C----CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe---------CCCcEEEEe
Q 021319           30 CTGTKLASGSV-D----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWD   95 (314)
Q Consensus        30 ~~g~~l~s~~~-D----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~D~~v~iwd   95 (314)
                      ++++.+..+.. +    +.|.+.|..+..  .+.  ++..-..+  .+.++|++..+.++..         .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~--vv~--~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGR--ILG--MTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTE--EEE--EEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCE--EEE--EEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence            45665444433 3    689999987632  222  23222334  7899999766655542         467999999


Q ss_pred             CCCCceeeeEEec--------CceEEEEEccCCCEEEEEeC--CCcEEEEEccCCeEeeeeccCcceeeEEeccC-CCeE
Q 021319           96 ARSGKCSQQAELS--------GENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMT-GEMF  164 (314)
Q Consensus        96 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  164 (314)
                      ..+++......+.        .....+.++|||++++++..  ++.|.++|+.+.+.+.++..+..   ....|. ...+
T Consensus       156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~  232 (426)
T 3c75_H          156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVF  232 (426)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEE
T ss_pred             CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEE
Confidence            9999988777653        23346889999999999874  57899999999998877765432   122222 2445


Q ss_pred             EEEcCCceEEEEeCCCCCceee----eeecccc-eEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE--EEEeee------
Q 021319          165 FLTTGNGTVEVLTYPSLRPLDT----VVAHTAG-CYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTK------  231 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~-i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~------  231 (314)
                      +..+.+|.+.+.+....+....    +...... ...+.+++++..++..+..+.+.+.|+.....  +..+..      
T Consensus       233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i  312 (426)
T 3c75_H          233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER  312 (426)
T ss_dssp             EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred             EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence            5556667666666633332211    1111111 12346788888776667788999999865432  121110      


Q ss_pred             ----cccCeEEEEEccCCcEEEEecC----------CceEEEEECCCCCeEEEEeccCccceeEEcCCCC-eeEEEecCC
Q 021319          232 ----LEWPVRTISFSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAGDDK  296 (314)
Q Consensus       232 ----~~~~v~~~~~sp~~~~l~s~s~----------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-~la~~~~d~  296 (314)
                          .......++++|+++.++.+..          ++.|.+.|..+.+.+..++.......++|+|+++ .++++... 
T Consensus       313 ~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~-  391 (426)
T 3c75_H          313 ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG-  391 (426)
T ss_dssp             GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT-
T ss_pred             ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC-
Confidence                0111223789999887766532          4579999999999999998777799999999998 77766632 


Q ss_pred             cccccccceEEecccc
Q 021319          297 NKYQADEGVFRIYGFE  312 (314)
Q Consensus       297 ~~~~~~~~~~~~~~~~  312 (314)
                            ++++-|+|.+
T Consensus       392 ------s~~VsVID~~  401 (426)
T 3c75_H          392 ------TQTLHIYDAA  401 (426)
T ss_dssp             ------TTEEEEEETT
T ss_pred             ------CCeEEEEECC
Confidence                  2566666653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.53  E-value=1.3e-10  Score=99.68  Aligned_cols=238  Identities=13%  Similarity=0.013  Sum_probs=155.2

Q ss_pred             EEEECCCCCEEEEee----------CCCcEEEeecCCCCCCceeeEEee--cC---CCCEEEEEEcCCCCCEEEEEe-C-
Q 021319           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELR--GH---ADSVDQLCWDPKHADLIATAS-G-   87 (314)
Q Consensus        25 ~v~~s~~g~~l~s~~----------~D~~v~iw~~~~~~~~~~~~~~~~--~h---~~~v~~l~~~~~~~~~l~s~~-~-   87 (314)
                      .+++||||+++..+.          .++.|.+||..+..  ....+.+.  .+   ......+.++|++. +|+.+. . 
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~--~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~  146 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAA  146 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc--EEEEEECCCccccccCCCccceEECCCCC-EEEEEecCC
Confidence            889999999988875          36789999986432  22222222  00   12345789999865 555554 3 


Q ss_pred             CCcEEEEeCCCCceeee-EEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeec-----cCc-c-eeeEEec
Q 021319           88 DKTVRLWDARSGKCSQQ-AELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK-----FGY-E-VNEIAWN  158 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~-~-~~~~~~~  158 (314)
                      +.+|.++| .+++.... ......   +.+.|++ ..+++.+.|+.+.++|. +.+......     ... + .....+.
T Consensus       147 ~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             CCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence            58899999 99887766 544332   3344554 34455667888999998 665543221     110 1 1122344


Q ss_pred             cCCCeEEEEcCCceEEEEeCCCCCc--eeeeee----------cccceEEEEECCCCCEEEEeeC----------CCeEE
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPSLRP--LDTVVA----------HTAGCYCIAIDPMGRYFAVGSA----------DSLVS  216 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~----------~~~~i~~i~~~~~~~~l~t~~~----------dg~i~  216 (314)
                      +++..++.....+.+.+++......  +..+..          .......++++|+++.+.++..          .+.|.
T Consensus       222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~  301 (373)
T 2mad_H          222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence            5555545555677888888754321  111110          1223445789999988777543          35799


Q ss_pred             EeeCCCcEEEEEeeecccCeEEEEEccCCc-EEEEec-CCceEEEEECCCCCeEEEE
Q 021319          217 LWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       217 vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s-~d~~v~v~~~~~~~~~~~~  271 (314)
                      ++|+.+++.++++... .....++|+|||+ +++++. .++.|.|+|..+++.+..+
T Consensus       302 VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          302 SVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            9999999998888533 3578899999999 777777 4899999999999988773

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=7.4e-12  Score=106.32  Aligned_cols=256  Identities=11%  Similarity=0.023  Sum_probs=159.8

Q ss_pred             ccEEEEEECCCCCEEEEee--CCCcEEEeecCCCCCCceeeE-----EeecCCCCEEEEEEcCCCCCEEEEEeC-----C
Q 021319           21 KKVHSVAWNCTGTKLASGS--VDQTARVWHIEPHGHGKVKDI-----ELRGHADSVDQLCWDPKHADLIATASG-----D   88 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~--~D~~v~iw~~~~~~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~~l~s~~~-----D   88 (314)
                      .....|+++++|+.+++..  .++.++||.++.   +.....     ...+|...+..+++++++ .+.++-..     +
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~---g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ---DGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET---TEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC---CCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCC
Confidence            6899999999999999864  234477787751   222211     112456789999999874 45544333     5


Q ss_pred             CcEEEEeCCCCceeeeEEecC-------ceEEEEEccCCCEEEEE-e---CCCcEEEEEccCCeEeeeecc--CcceeeE
Q 021319           89 KTVRLWDARSGKCSQQAELSG-------ENINITYKPDGTHIAVG-N---RDDELTILDVRKFKPIHRRKF--GYEVNEI  155 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~-~---~d~~i~i~d~~~~~~~~~~~~--~~~~~~~  155 (314)
                      ..|.+||+.+++......+..       ....+++.+++..++++ .   .++.|.+||+.+.+.......  .......
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            789999999888666555421       23467888765555444 4   578899999987654433221  1000012


Q ss_pred             EeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC-eEEEeeCC---CcE-------
Q 021319          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS-LVSLWDIS---EML-------  224 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-~i~vwd~~---~~~-------  224 (314)
                      .+.+++..+.....++.+..|              ...+..++++|+++.|+.+...+ .+..++..   .+.       
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~--------------~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~  238 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRP--------------HLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG  238 (343)
T ss_dssp             CCEETTEECBEECTTSCEECC--------------CCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred             ceeECCEEEEeccCCCceece--------------ecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence            233344444444444443222              12467899999999888887766 44444421   100       


Q ss_pred             -EEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec--cCccceeEEcCCCCeeEEEecC
Q 021319          225 -CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       225 -~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~--~~~i~~v~~~~~~~~la~~~~d  295 (314)
                       .+.. .+.......++++++|.++++...++.|.+||..+++.......  .....+++|.|++.++++.+..
T Consensus       239 ~~~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          239 SKIER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             TTCEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             cceEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence             0011 12223456799999999999999999999999866654333322  2347899999999888777654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=4.6e-11  Score=99.27  Aligned_cols=226  Identities=11%  Similarity=0.058  Sum_probs=149.4

Q ss_pred             cccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319           18 GHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA   96 (314)
Q Consensus        18 gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~   96 (314)
                      .+..-.....|+|++ .++++...++.|..|+.+...   ...   ......+.++++++++. ++++ . +..|.+||.
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~---~~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~   80 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---VQR---VTMDAPVSSVALRQSGG-YVAT-I-GTKFCALNW   80 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---EEE---EECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEET
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc---EEE---EeCCCceEEEEECCCCC-EEEE-E-CCeEEEEEC
Confidence            344556788999965 456666678999999986532   221   23456789999998764 5554 3 578999999


Q ss_pred             CCCceeeeEEec-----CceEEEEEccCCCEEEEEeCC---------CcEEEEEccC-CeEeeeeccCcceeeEEeccCC
Q 021319           97 RSGKCSQQAELS-----GENINITYKPDGTHIAVGNRD---------DELTILDVRK-FKPIHRRKFGYEVNEIAWNMTG  161 (314)
Q Consensus        97 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      .+++........     .....+++.|+|++++.....         ....+|.+.. .+...........+.++|+|++
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg  160 (297)
T 3g4e_A           81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDH  160 (297)
T ss_dssp             TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTS
T ss_pred             CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCC
Confidence            887754433321     123458899999966654321         2234444332 2221112222346789999999


Q ss_pred             CeEEE-EcCCceEEEEeCC--CCCc-----eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc
Q 021319          162 EMFFL-TTGNGTVEVLTYP--SLRP-----LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE  233 (314)
Q Consensus       162 ~~~~~-~~~~g~~~~~~~~--~~~~-----~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~  233 (314)
                      +.+++ ....+.+..|++.  ....     +..+..+...+..++++++|++.++...++.|..||..+++.+..+....
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~  240 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV  240 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence            86654 4567889999863  3221     11122234567899999999988887778899999998888888877666


Q ss_pred             cCeEEEEEc-cCCcEEEEec
Q 021319          234 WPVRTISFS-HTGDYIASAS  252 (314)
Q Consensus       234 ~~v~~~~~s-p~~~~l~s~s  252 (314)
                      ..+.+++|. |+++.|...+
T Consensus       241 ~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          241 DKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             SBEEEEEEESGGGCEEEEEE
T ss_pred             CCceEEEEeCCCCCEEEEEc
Confidence            678999998 8887665443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.51  E-value=4e-10  Score=93.13  Aligned_cols=243  Identities=9%  Similarity=0.010  Sum_probs=163.7

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec---CceEEEEEccCCCEEEEEeCCCcEEEEEc
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDV  137 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  137 (314)
                      .+......+.++++.+++ .+.++...++.|.+||.. ++... ....   .....+++.++++..++...++.|..+|.
T Consensus        14 ~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~   90 (300)
T 2qc5_A           14 NLSIPDSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK   90 (300)
T ss_dssp             ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             ecCCCCCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence            344445678899998874 577766678999999987 55433 2221   34667888999987777766788999998


Q ss_pred             cCCeEee-eec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEeeCCCe
Q 021319          138 RKFKPIH-RRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSL  214 (314)
Q Consensus       138 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~  214 (314)
                      . .+... ... ....+..+++.+++..+++...++.+..++.. .+... .+......+..+++++++++.++...++.
T Consensus        91 ~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A           91 K-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             C-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence            7 33321 111 23457788889999888887778889888875 33221 12223456899999999997777666788


Q ss_pred             EEEeeCCCcEEEE-EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE-Ee-ccCccceeEEcCCCCeeEE
Q 021319          215 VSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IP-CRAAMNSVEWNPKYNLLAY  291 (314)
Q Consensus       215 i~vwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~-~~-~~~~i~~v~~~~~~~~la~  291 (314)
                      |..+|. ++.... ........+..++++|+|.+.++....+.|.+++. +++.... .+ ....+.++++.|++++.++
T Consensus       169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~  246 (300)
T 2qc5_A          169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT  246 (300)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence            999998 444332 12222345789999999998887777888999998 5554432 22 1345789999999987665


Q ss_pred             EecCCcccccc-cceEEecc
Q 021319          292 AGDDKNKYQAD-EGVFRIYG  310 (314)
Q Consensus       292 ~~~d~~~~~~~-~~~~~~~~  310 (314)
                      ...+..++.++ .|+++.|.
T Consensus       247 ~~~~~~i~~~~~~g~~~~~~  266 (300)
T 2qc5_A          247 EWGANQIGRITNDNTIQEYQ  266 (300)
T ss_dssp             ETTTTEEEEECTTSCEEEEE
T ss_pred             ccCCCeEEEECCCCcEEEEE
Confidence            54444443322 34554443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.51  E-value=1.5e-12  Score=111.28  Aligned_cols=169  Identities=11%  Similarity=0.082  Sum_probs=130.8

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEEccCCe-----------EeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCC
Q 021319          111 NINITYKPDGTHIAVGNRDDELTILDVRKFK-----------PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP  179 (314)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  179 (314)
                      ...+++++...++++|+.+ .+.+|++...+           +........ +..++|  +++.++++ .++.+++|+..
T Consensus        40 ~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred             ccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence            4458888999999999887 56669865332           223334555 899999  88888888 88999999988


Q ss_pred             CCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEE
Q 021319          180 SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI  259 (314)
Q Consensus       180 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v  259 (314)
                      ..........|..++..+.+.+.  .+|++..||.+.+||+.++...+    +...|.+++|||+|  ++.|..||.+++
T Consensus       115 sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~  186 (388)
T 1xip_A          115 ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred             hhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence            77766666677778888777654  38889999999999998776543    34579999999999  678999999999


Q ss_pred             EECCCCCe--EEEEe----------ccCccceeEEcCCCCeeEEE
Q 021319          260 SNVHTGRT--VHQIP----------CRAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       260 ~~~~~~~~--~~~~~----------~~~~i~~v~~~~~~~~la~~  292 (314)
                      |+...+..  ...++          +...|.+|.|.+++.+|++=
T Consensus       187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            98877664  45552          34579999999999888653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.47  E-value=2.9e-11  Score=104.65  Aligned_cols=254  Identities=12%  Similarity=0.052  Sum_probs=160.1

Q ss_pred             EEEECCCCCEEEEee----------CCCcEEEeecCCCCCCceeeEEeecC-----CCCEEEEEEcCCCCCEEEEEe-C-
Q 021319           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATAS-G-   87 (314)
Q Consensus        25 ~v~~s~~g~~l~s~~----------~D~~v~iw~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~l~s~~-~-   87 (314)
                      .+.++|||+++..+.          .++.|.++|..+..  .+..+.+.+.     ......+.++|++. +++.+. . 
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~  198 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSP  198 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCC
Confidence            789999999877765          36789999987642  2233333211     12345678899865 555544 3 


Q ss_pred             CCcEEEEeCCCCceeeeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeee----eccCc--ceeeEEeccC
Q 021319           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHR----RKFGY--EVNEIAWNMT  160 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~--~~~~~~~~~~  160 (314)
                      +++|.+.|..+++....+...+.   ....|++ ..+++.+.|+.+.+.+....+....    +....  ......+.++
T Consensus       199 ~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~d  275 (426)
T 3c75_H          199 APAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLR  275 (426)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTT
T ss_pred             CCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCC
Confidence            68999999999988877665432   1122222 3344445566666556533332211    11111  1123456788


Q ss_pred             CCeEEEEcCCceEEEEeCCCCCc--eeeee----------ecccceEEEEECCCCCEEEEeeC----------CCeEEEe
Q 021319          161 GEMFFLTTGNGTVEVLTYPSLRP--LDTVV----------AHTAGCYCIAIDPMGRYFAVGSA----------DSLVSLW  218 (314)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~--~~~~~----------~~~~~i~~i~~~~~~~~l~t~~~----------dg~i~vw  218 (314)
                      +..+++....+.+.+.+......  +..+.          ........++++|+++.+++...          .+.|.+.
T Consensus       276 g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI  355 (426)
T 3c75_H          276 SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL  355 (426)
T ss_dssp             TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence            88877777888999988754321  11110          01122234789999887666542          3579999


Q ss_pred             eCCCcEEEEEeeecccCeEEEEEccCCc-EEEEec-CCceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319          219 DISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s-~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~  285 (314)
                      |+.+.+.++++.... ....++|+||++ +++++. .++.|.|+|+.+++.+..+..-+.-..+..+||
T Consensus       356 D~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~~  423 (426)
T 3c75_H          356 NAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQIITTHD  423 (426)
T ss_dssp             ETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCCEEECCC
T ss_pred             ECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCcEEEcCC
Confidence            999999998886433 478899999999 888887 589999999999999988732222222444443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.45  E-value=1.6e-10  Score=96.31  Aligned_cols=234  Identities=12%  Similarity=0.096  Sum_probs=152.8

Q ss_pred             cceeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           12 HSREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ..+.+..+........|+|+|+ ++++...++.|..|+...    ...  .+..+...+..+++++++ +++++...++.
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~~~--~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~  108 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----TVD--VLLDATAFTNGNAVDAQQ-RLVHCEHGRRA  108 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----CEE--EEEESCSCEEEEEECTTS-CEEEEETTTTE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----CEE--EEeCCCCccceeeECCCC-CEEEEECCCCE
Confidence            3444555666788999999998 567777789999997631    222  334456778999999875 57666666789


Q ss_pred             EEEEeCCCCceeeeEEe-cC----ceEEEEEccCCCEEEE----EeC-------------CCcEEEEEccCCeEeeeecc
Q 021319           91 VRLWDARSGKCSQQAEL-SG----ENINITYKPDGTHIAV----GNR-------------DDELTILDVRKFKPIHRRKF  148 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~-~~----~~~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~  148 (314)
                      |.+||.. ++....... ..    ....+.+.++|++.++    |..             .+.|..+|..+.+..... .
T Consensus       109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~  186 (305)
T 3dr2_A          109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D  186 (305)
T ss_dssp             EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E
T ss_pred             EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c
Confidence            9999986 554322211 11    1235888999998775    332             245777777544332222 2


Q ss_pred             CcceeeEEeccCCCeEEEEcCC------ceEEEEeCCCCCceee---e-eecccceEEEEECCCCCEEEEeeCCCeEEEe
Q 021319          149 GYEVNEIAWNMTGEMFFLTTGN------GTVEVLTYPSLRPLDT---V-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLW  218 (314)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~---~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vw  218 (314)
                      ......++|+|+++.++++...      +.+..|+..... +..   + ......+..++++++|++.+ ++.+ .|.+|
T Consensus       187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~  263 (305)
T 3dr2_A          187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVF  263 (305)
T ss_dssp             ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEE
T ss_pred             CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEE
Confidence            2345778999999977766554      688888865432 111   1 11223456789999999555 4444 49999


Q ss_pred             eCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEE
Q 021319          219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI  259 (314)
Q Consensus       219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v  259 (314)
                      |. +++.+..+.... .+.+++|+|+++.|..++.++..++
T Consensus       264 ~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          264 DS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             CT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            98 466666665444 5888999999988887777754443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.45  E-value=2.8e-11  Score=112.43  Aligned_cols=239  Identities=13%  Similarity=0.118  Sum_probs=148.2

Q ss_pred             cccccEEEEEECCCCCEEEE-----eeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC---
Q 021319           18 GHKKKVHSVAWNCTGTKLAS-----GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK---   89 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s-----~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~---   89 (314)
                      +|...+..++|||||++||-     |+.+..|++||++++.   .....+.+.  ....++|+ ++ +.|+.++.|.   
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~---~~~~~~~~~--k~~~~~Ws-Dg-~~l~y~~~~~~~~  198 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ---PLETPLKDV--KFSGISWL-GN-EGFFYSSYDKPDG  198 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS---EEEEEEEEE--ESCCCEEE-TT-TEEEEEESSCCC-
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC---CCccccCCc--eeccEEEe-CC-CEEEEEEecCccc
Confidence            45667999999999998883     3344689999998643   222222221  12456898 65 5566666664   


Q ss_pred             ----------cEEEEeCCCCceee--eEEecC----ceEEEEEccCCCEEEEEeC----CCcEEEEEccCCe-Eeeeecc
Q 021319           90 ----------TVRLWDARSGKCSQ--QAELSG----ENINITYKPDGTHIAVGNR----DDELTILDVRKFK-PIHRRKF  148 (314)
Q Consensus        90 ----------~v~iwd~~~~~~~~--~~~~~~----~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~-~~~~~~~  148 (314)
                                .|.+|++.++....  ......    ....+.++|||++|+....    ...+.++|+.... .......
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~  278 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG  278 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence                      39999987765321  111111    2467889999999876543    2478899986652 1122211


Q ss_pred             Cc-ceeeEEeccCCCeEEEEc-C---CceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCCC---eEEEe
Q 021319          149 GY-EVNEIAWNMTGEMFFLTT-G---NGTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADS---LVSLW  218 (314)
Q Consensus       149 ~~-~~~~~~~~~~~~~~~~~~-~---~g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg---~i~vw  218 (314)
                      .. ..... +++++..+++.+ .   .+.+..+++.....  ...+..|...+.  .|+++++.|+....++   .|.+|
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence            11 12222 556666555443 3   36788888765443  244555665555  8889998877665544   68999


Q ss_pred             eCCCcEEEEEee-ecccCeEEEEEccCCcEEEEecCC----ceEEEEECCCCCe
Q 021319          219 DISEMLCVRTFT-KLEWPVRTISFSHTGDYIASASED----LFIDISNVHTGRT  267 (314)
Q Consensus       219 d~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~d----~~v~v~~~~~~~~  267 (314)
                      |+..... +.+. .....+..++++|+++.|+....+    +.+..+|+.+++.
T Consensus       356 d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          356 DYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             CTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             ECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            9875543 3333 223356777888888776655444    7899999887653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=8.4e-10  Score=92.91  Aligned_cols=220  Identities=11%  Similarity=0.025  Sum_probs=142.3

Q ss_pred             ccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           21 KKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        21 ~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      .......|+|++. ++++...++.|..|+.+..   ....  + .....+.++.|++++ +++++ .. ..|.+||..++
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---~~~~--~-~~~~~v~~i~~~~dg-~l~v~-~~-~gl~~~d~~~g  119 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASG---RKTV--H-ALPFMGSALAKISDS-KQLIA-SD-DGLFLRDTATG  119 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTT---EEEE--E-ECSSCEEEEEEEETT-EEEEE-ET-TEEEEEETTTC
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCC---cEEE--E-ECCCcceEEEEeCCC-eEEEE-EC-CCEEEEECCCC
Confidence            3467889999854 5666667889999987642   2222  2 234678999999875 45554 34 45999999888


Q ss_pred             ceeeeEEec-----CceEEEEEccCCCEEEEEeC------CCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE-
Q 021319          100 KCSQQAELS-----GENINITYKPDGTHIAVGNR------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-  167 (314)
Q Consensus       100 ~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (314)
                      +........     .....+.++|+|++++....      .+.|..++  ..+.............++|+++++.++++ 
T Consensus       120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred             cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence            754332221     12456889999987665432      23455555  33322211112245688999999866554 


Q ss_pred             cCCceEEEEeCC--CC-Cc--eeee---eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEE
Q 021319          168 TGNGTVEVLTYP--SL-RP--LDTV---VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI  239 (314)
Q Consensus       168 ~~~g~~~~~~~~--~~-~~--~~~~---~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  239 (314)
                      ..++.+.+|+..  .. ..  ...+   ......+..++++++|.+.++...++.|..||. +++.+..+......+.++
T Consensus       198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~  276 (326)
T 2ghs_A          198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP  276 (326)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred             CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence            557899999875  33 21  1112   122345788999999998777766788999998 566666666555568999


Q ss_pred             EEc-cCCcEEEEec
Q 021319          240 SFS-HTGDYIASAS  252 (314)
Q Consensus       240 ~~s-p~~~~l~s~s  252 (314)
                      +|+ |+++.|+.++
T Consensus       277 af~g~d~~~L~vt~  290 (326)
T 2ghs_A          277 AFIGPDASRLLVTS  290 (326)
T ss_dssp             EEESTTSCEEEEEE
T ss_pred             EEecCCCCEEEEEe
Confidence            998 8887665443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=8.7e-12  Score=106.52  Aligned_cols=169  Identities=14%  Similarity=0.154  Sum_probs=124.7

Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc---------e--eeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 021319           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGK---------C--SQQAELSGENINITYKPDGTHIAVGNRDDELTILD  136 (314)
Q Consensus        68 ~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d  136 (314)
                      +++.|++++.. .++++|+.+ .+++|++...+         .  .....+.. +..++|  +++.|+++ .++.|.+||
T Consensus        39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            57889999875 588888887 55669854322         1  12334455 778899  99999999 889999999


Q ss_pred             ccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeE
Q 021319          137 VRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLV  215 (314)
Q Consensus       137 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i  215 (314)
                      +++....... .+...+..+.+.+.  .+++...+|.+.+|++.......    +...++|++|+|+|  ++.|..||.+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            9876533221 22334555555433  48888999999999998655432    45689999999999  6789999999


Q ss_pred             EEeeCCCcEE--EEEe------e---ecccCeEEEEEccCCcEEEE
Q 021319          216 SLWDISEMLC--VRTF------T---KLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       216 ~vwd~~~~~~--~~~~------~---~~~~~v~~~~~sp~~~~l~s  250 (314)
                      ++|+.....+  .+++      .   .+...|.+|+|.+++.++++
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999887765  5555      2   25678999999999999886

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.39  E-value=9.4e-10  Score=94.52  Aligned_cols=217  Identities=11%  Similarity=0.095  Sum_probs=150.6

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCC----ceeeeEE---e----c-CceEEEEEccCCCEEEEEeCC------CcEEEEEc
Q 021319           76 PKHADLIATASGDKTVRLWDARSG----KCSQQAE---L----S-GENINITYKPDGTHIAVGNRD------DELTILDV  137 (314)
Q Consensus        76 ~~~~~~l~s~~~D~~v~iwd~~~~----~~~~~~~---~----~-~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~  137 (314)
                      ++...+++++..+++|.++|..+.    +..+..+   +    . ...-.+...|+| .+++...+      +.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            555667788888999999998644    3333331   1    1 123356788999 66655544      68999999


Q ss_pred             cCCeEeeeeccCc----ceeeEEeccCCCeEEEEc-------------------CCceEEEEeCCCCCceeeeeec--cc
Q 021319          138 RKFKPIHRRKFGY----EVNEIAWNMTGEMFFLTT-------------------GNGTVEVLTYPSLRPLDTVVAH--TA  192 (314)
Q Consensus       138 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~--~~  192 (314)
                      .+.+.+.+...+.    -...+.|+|+++.++++.                   ...++.+|++...+.+.++..-  ..
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9999888876442    134577899999888874                   3789999999876655555432  23


Q ss_pred             ceEEEEE--CCCCCEEEEee------CCCeEEEeeCCCcE--EEEEe--eec----------------ccCeEEEEEccC
Q 021319          193 GCYCIAI--DPMGRYFAVGS------ADSLVSLWDISEML--CVRTF--TKL----------------EWPVRTISFSHT  244 (314)
Q Consensus       193 ~i~~i~~--~~~~~~l~t~~------~dg~i~vwd~~~~~--~~~~~--~~~----------------~~~v~~~~~sp~  244 (314)
                      ....+.|  +|+++++.+++      .+++|.+|....+.  .++.+  ...                ......|.+|||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            4566666  99999877666      56688877665432  12221  110                123577999999


Q ss_pred             CcEEEEecC-CceEEEEECC---CCCeEEEEeccCc---------------cceeEEcCCCCeeEEEe
Q 021319          245 GDYIASASE-DLFIDISNVH---TGRTVHQIPCRAA---------------MNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       245 ~~~l~s~s~-d~~v~v~~~~---~~~~~~~~~~~~~---------------i~~v~~~~~~~~la~~~  293 (314)
                      |++|..+.. .+.|.++|+.   +.+.+..++.++.               -..++++|+++.|..+.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999988765 5789999985   3456666665533               48999999999998888

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=3.3e-10  Score=96.41  Aligned_cols=240  Identities=10%  Similarity=-0.076  Sum_probs=148.9

Q ss_pred             EEEEeeCCC----cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe---------CCCcEEEEeCCCCc
Q 021319           34 KLASGSVDQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWDARSGK  100 (314)
Q Consensus        34 ~l~s~~~D~----~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~D~~v~iwd~~~~~  100 (314)
                      .+++-..++    +|.+.|.++..   +.. ++..-..+  .+.++|++..+.++..         .+++|.+||..+++
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~---v~~-~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~  107 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGV---TLG-HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTE---EEE-EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             EEEECCccCCccceEEEEECCCCe---EEE-EEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence            344444444    77788876532   222 23322344  6999999766555542         47899999999999


Q ss_pred             eeeeEEec--------CceEEEEEccCCCEEEEEeC--CCcEEE--EEccCCeEeeeeccCcc--------eeeEEe---
Q 021319          101 CSQQAELS--------GENINITYKPDGTHIAVGNR--DDELTI--LDVRKFKPIHRRKFGYE--------VNEIAW---  157 (314)
Q Consensus       101 ~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~--d~~i~i--~d~~~~~~~~~~~~~~~--------~~~~~~---  157 (314)
                      ........        .....+.++|||++++++..  ...+.+  +|+.+   +..+..+..        ..-+..   
T Consensus       108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~d  184 (368)
T 1mda_H          108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCP  184 (368)
T ss_dssp             EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCT
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCC
Confidence            98887664        23456899999999998875  356888  88866   222211100        000111   


Q ss_pred             ----------------------------------ccCCCeEEEEcCCceEEEEeCCCCC--ceeeeee----------cc
Q 021319          158 ----------------------------------NMTGEMFFLTTGNGTVEVLTYPSLR--PLDTVVA----------HT  191 (314)
Q Consensus       158 ----------------------------------~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~----------~~  191 (314)
                                                        .+++..++.... +.+.+.+.....  .+..+..          ..
T Consensus       185 g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p  263 (368)
T 1mda_H          185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             CCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc
Confidence                                              112222222222 555555553211  1111100          01


Q ss_pred             cceEEEEECCCCCEEEEeeC---------CCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE-EEEec-CCceEEEE
Q 021319          192 AGCYCIAIDPMGRYFAVGSA---------DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY-IASAS-EDLFIDIS  260 (314)
Q Consensus       192 ~~i~~i~~~~~~~~l~t~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~s-~d~~v~v~  260 (314)
                      .....++++|+++.++++..         ++.+.++|+.+.+.+.++.... ....++|+|||++ +++.. .++.|.|+
T Consensus       264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVI  342 (368)
T 1mda_H          264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIY  342 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEE
Confidence            11222789999988776533         2356799999998888776544 4788999999984 55555 58999999


Q ss_pred             ECCCCCeEEEEeccCccceeEEcC
Q 021319          261 NVHTGRTVHQIPCRAAMNSVEWNP  284 (314)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~v~~~~  284 (314)
                      |+.+++.+..++-......+++.+
T Consensus       343 D~~t~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          343 DAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             ESSSCEEEEECCCCSCCCEEECCC
T ss_pred             ECCCCcEEEEEECCCCCCEEEeec
Confidence            999999999887666666776654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.35  E-value=2.8e-09  Score=91.56  Aligned_cols=220  Identities=14%  Similarity=0.111  Sum_probs=145.0

Q ss_pred             CCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEee--------cCCCCEEEEEEcCCCCCEEEEEeCC------CcEEEE
Q 021319           30 CTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELR--------GHADSVDQLCWDPKHADLIATASGD------KTVRLW   94 (314)
Q Consensus        30 ~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~~l~s~~~D------~~v~iw   94 (314)
                      +++++ ++++..++.|.|+|+.+..........+.        +.+ ....+...|++  +++++..+      +.|.+.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDA--IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEE-EEEEEEECSSC--EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCC-cccceeECCCe--EEEEcCCCcCCCCCCeEEEE
Confidence            77776 45566889999999864322111111121        111 23345566774  77777766      789999


Q ss_pred             eCCCCceeeeEEecCc----eEEEEEccCCCEEEEEe-------------------CCCcEEEEEccCCeEeeeeccC--
Q 021319           95 DARSGKCSQQAELSGE----NINITYKPDGTHIAVGN-------------------RDDELTILDVRKFKPIHRRKFG--  149 (314)
Q Consensus        95 d~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~--  149 (314)
                      |..+.+.+...+....    ...+.|+|+++.+++..                   .+.+|.+||+.+.+.+.++..+  
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            9999988877654322    22377899999888885                   3688999999988877777665  


Q ss_pred             -cceeeEEe--ccCCCeEEEEc------CCceEEEEeCCCCC--ceeee--ee----------------cccceEEEEEC
Q 021319          150 -YEVNEIAW--NMTGEMFFLTT------GNGTVEVLTYPSLR--PLDTV--VA----------------HTAGCYCIAID  200 (314)
Q Consensus       150 -~~~~~~~~--~~~~~~~~~~~------~~g~~~~~~~~~~~--~~~~~--~~----------------~~~~i~~i~~~  200 (314)
                       .....+.|  +|+++..++++      .++++.+|.....+  ....+  ..                -...+..|.++
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence             23455555  99999887776      45677665443211  00000  00                02346889999


Q ss_pred             CCCCEEEEeeC-CCeEEEeeCCC---cEEEEEeeecc----------c----CeEEEEEccCCcEEEEec
Q 021319          201 PMGRYFAVGSA-DSLVSLWDISE---MLCVRTFTKLE----------W----PVRTISFSHTGDYIASAS  252 (314)
Q Consensus       201 ~~~~~l~t~~~-dg~i~vwd~~~---~~~~~~~~~~~----------~----~v~~~~~sp~~~~l~s~s  252 (314)
                      +||++|.++.. .+.|.+||+.+   .+.+..+....          .    ....++++|||++|+.+.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999887766 57999999852   35555443220          1    257799999999999888

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.34  E-value=3.4e-10  Score=105.08  Aligned_cols=226  Identities=12%  Similarity=0.095  Sum_probs=144.8

Q ss_pred             cCCCCEEEEEEcCCCCCEEEEE----eCCCcEEEEeCCCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCc-------
Q 021319           64 GHADSVDQLCWDPKHADLIATA----SGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDE-------  131 (314)
Q Consensus        64 ~h~~~v~~l~~~~~~~~~l~s~----~~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~-------  131 (314)
                      +|...+..++|+|++..++.+.    +.+..|++||+.+++..... .... ...++|+ |++.|+.+..+..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            3556788899999865333333    33367999999999865432 2222 2457899 9999998887743       


Q ss_pred             ------EEEEEccCCe----Eeeeecc--CcceeeEEeccCCCeEEEEcC----CceEEEEeCCCCC-ceeeeeecccce
Q 021319          132 ------LTILDVRKFK----PIHRRKF--GYEVNEIAWNMTGEMFFLTTG----NGTVEVLTYPSLR-PLDTVVAHTAGC  194 (314)
Q Consensus       132 ------i~i~d~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~~~~~~~i  194 (314)
                            |.+|++.+.+    .+.....  ......+.|+++++.+++...    .+.++++++.... ....+..+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                  8888886643    2222221  223567889999998866543    2478888876543 344455555544


Q ss_pred             EEEEECCCCCEEE-EeeCC---CeEEEeeCCCcEE--EEEeeecccCeEEEEEccCCcEEEEecC-Cc--eEEEEECCCC
Q 021319          195 YCIAIDPMGRYFA-VGSAD---SLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASE-DL--FIDISNVHTG  265 (314)
Q Consensus       195 ~~i~~~~~~~~l~-t~~~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~s~-d~--~v~v~~~~~~  265 (314)
                      ... +++++..|+ ....+   +.|..+|+.++..  .+.+..+...+.  .|+|++++|+.... ++  .|.+|+.. +
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~-g  359 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE-G  359 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT-S
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC-C
Confidence            444 556665544 44443   5799999987543  234555555554  89999998877665 44  68888876 4


Q ss_pred             CeEEEEe--ccCccceeEEcCCCCeeEEEecC
Q 021319          266 RTVHQIP--CRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       266 ~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      ...+.+.  ..+.+..+.++|++..|+....+
T Consensus       360 ~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss  391 (693)
T 3iuj_A          360 KRVREVALPGLGSVSGFNGKHDDPALYFGFEN  391 (693)
T ss_dssp             CEEEEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred             CeeEEeecCCCceEEeeecCCCCCEEEEEecC
Confidence            4455554  23467788889988877666544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.32  E-value=2.7e-10  Score=96.98  Aligned_cols=221  Identities=13%  Similarity=-0.006  Sum_probs=143.5

Q ss_pred             EEEEEeCCC----cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEe----------CCCcEEEEEccCCeEeeee
Q 021319           81 LIATASGDK----TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN----------RDDELTILDVRKFKPIHRR  146 (314)
Q Consensus        81 ~l~s~~~D~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~  146 (314)
                      ..++...++    +|.++|..+++.+..+...... .+.++||+++++++.          .++.|.++|+.+.+.+.++
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I  112 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI  112 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEE
Confidence            444554454    8889999999999888877777 899999999999886          3678999999999998887


Q ss_pred             ccC--------cceeeEEeccCCCeEEEEcC--CceEEE--EeCCCCCceeeeee-c------ccceEEEEE--------
Q 021319          147 KFG--------YEVNEIAWNMTGEMFFLTTG--NGTVEV--LTYPSLRPLDTVVA-H------TAGCYCIAI--------  199 (314)
Q Consensus       147 ~~~--------~~~~~~~~~~~~~~~~~~~~--~g~~~~--~~~~~~~~~~~~~~-~------~~~i~~i~~--------  199 (314)
                      ..+        .....++++|+++.++++..  ...+.+  +|...   +..+.. .      .+.-.-+++        
T Consensus       113 ~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEE
T ss_pred             ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEE
Confidence            654        34678999999999988864  456777  77643   111110 0      000000111        


Q ss_pred             -----------------------------CCCCCEEEEeeCCCeEEEeeCCCc--EEEEEeee-------cc---cCeEE
Q 021319          200 -----------------------------DPMGRYFAVGSADSLVSLWDISEM--LCVRTFTK-------LE---WPVRT  238 (314)
Q Consensus       200 -----------------------------~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~-------~~---~~v~~  238 (314)
                                                   .+++..++..+. +.+.+.|+...  ..+..+..       ..   .....
T Consensus       190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~  268 (368)
T 1mda_H          190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM  268 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred             EECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence                                         222222222333 56666776432  22222210       00   11122


Q ss_pred             EEEccCCcEEEEecC---------CceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319          239 ISFSHTGDYIASASE---------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  309 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~---------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~  309 (314)
                      ++|+|+++.++.+..         +..+.++|+.+.+.+..++.......++|+|+++.++++...      .++++-++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~------~~~~VsVI  342 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA------GTEVLDIY  342 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET------TTTEEEEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccC------CCCeEEEE
Confidence            789999988876533         235669999999999888877789999999999865555541      02566677


Q ss_pred             ccc
Q 021319          310 GFE  312 (314)
Q Consensus       310 ~~~  312 (314)
                      |.+
T Consensus       343 D~~  345 (368)
T 1mda_H          343 DAA  345 (368)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.31  E-value=2.4e-08  Score=81.41  Aligned_cols=251  Identities=9%  Similarity=0.023  Sum_probs=151.7

Q ss_pred             CEEEEeeCCCcEEEeecCCCCCCcee-eEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-Cc
Q 021319           33 TKLASGSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GE  110 (314)
Q Consensus        33 ~~l~s~~~D~~v~iw~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~  110 (314)
                      .+|+-+.. +.|+.++++........ ...+......+..++|++.++.+.++-...+.|..+|...+......... ..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34444443 46777777643211100 00111122346789999876667777777899999998765433222211 35


Q ss_pred             eEEEEEccCCCEEEEE-eCCCcEEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEc-C--CceEEEEeCCCCCcee
Q 021319          111 NINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTT-G--NGTVEVLTYPSLRPLD  185 (314)
Q Consensus       111 ~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~--~g~~~~~~~~~~~~~~  185 (314)
                      ...+++.+++..|+++ ...+.|.++++............ .....+++++++..++++. .  .+.+..++..... ..
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence            6678899876655554 45678999887643211111112 3567889999655554444 3  4678777765432 22


Q ss_pred             eee-ecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319          186 TVV-AHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       186 ~~~-~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      .+. .....+..+++++++..|. +-...+.|..+|.........+..... ...++.. .+..+++....+.|.++|..
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~-P~gi~~d-~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCC-ceEEEEe-CCEEEEEECCCCeEEEEeCC
Confidence            221 2224578999999876655 444567999999975543333333333 3556654 34444444566899999999


Q ss_pred             CCCeEEEEeccC--ccceeEEcCCCC
Q 021319          264 TGRTVHQIPCRA--AMNSVEWNPKYN  287 (314)
Q Consensus       264 ~~~~~~~~~~~~--~i~~v~~~~~~~  287 (314)
                      +++.+..++...  ....+++.|++.
T Consensus       238 ~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          238 ISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCceEEEccccccccceeeecCccC
Confidence            999888886533  478899998875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.28  E-value=2.5e-09  Score=98.83  Aligned_cols=261  Identities=10%  Similarity=0.002  Sum_probs=169.9

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC---------CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA---------DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      +..+..++.++.|.-+|.+++.  .+.........         .....++..   +..|+.++.|+.|..+|..+|+..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~v~v~~~dg~l~alD~~tG~~~  151 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGN--RIWTYDPQIDRSTGFKGCCDVVNRGVALW---KGKVYVGAWDGRLIALDAATGKEV  151 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTE--EEEEECCCCCGGGGGGSSSCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEECCCCc--EEEEEcCCCCccccccccccCCCCCceEE---CCEEEEEcCCCEEEEEECCCCCEE
Confidence            4466667778888888876543  22222221110         000122322   347778889999999999999887


Q ss_pred             eeEEec-C-----ceEE-EEEccCCCEEEEEeC------CCcEEEEEccCCeEeeeeccCcce-----------------
Q 021319          103 QQAELS-G-----ENIN-ITYKPDGTHIAVGNR------DDELTILDVRKFKPIHRRKFGYEV-----------------  152 (314)
Q Consensus       103 ~~~~~~-~-----~~~~-~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~-----------------  152 (314)
                      -..... .     .... ...  .+..++++..      ++.|..+|.++.+.+.+.......                 
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            665543 1     1110 111  2345555543      688999999998887665432111                 


Q ss_pred             ----------------eeEEeccCCCeEEEEcCCc-------------------eEEEEeCCCCCceeeeee--c-----
Q 021319          153 ----------------NEIAWNMTGEMFFLTTGNG-------------------TVEVLTYPSLRPLDTVVA--H-----  190 (314)
Q Consensus       153 ----------------~~~~~~~~~~~~~~~~~~g-------------------~~~~~~~~~~~~~~~~~~--~-----  190 (314)
                                      ...++.+.+..++++..++                   .+..++..+.+.+-.+..  |     
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~  309 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY  309 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence                            2456778888888887664                   488888887776655442  2     


Q ss_pred             --ccceEEEEECCCC---CEEEEeeCCCeEEEeeCCCcEEEEEeeecccC-----------e------------------
Q 021319          191 --TAGCYCIAIDPMG---RYFAVGSADSLVSLWDISEMLCVRTFTKLEWP-----------V------------------  236 (314)
Q Consensus       191 --~~~i~~i~~~~~~---~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------v------------------  236 (314)
                        ...+..+....+|   +.++.++.+|.+.++|..+++.+..+.....+           +                  
T Consensus       310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~  389 (677)
T 1kb0_A          310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP  389 (677)
T ss_dssp             CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred             ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence              1223333444467   68999999999999999999887655321100           1                  


Q ss_pred             ------EEEEEccCCcEEEEecC-------------------------------------------CceEEEEECCCCCe
Q 021319          237 ------RTISFSHTGDYIASASE-------------------------------------------DLFIDISNVHTGRT  267 (314)
Q Consensus       237 ------~~~~~sp~~~~l~s~s~-------------------------------------------d~~v~v~~~~~~~~  267 (314)
                            ..++|+|+..+++..+.                                           .+.|..||..+|+.
T Consensus       390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~  469 (677)
T 1kb0_A          390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA  469 (677)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred             ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence                  14688999888877543                                           27899999999999


Q ss_pred             EEEEeccCccceeEEcCCCCeeEEEecCCccc
Q 021319          268 VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       268 ~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      +.+++...++.+..+.+.+.++++++.|+.++
T Consensus       470 ~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~  501 (677)
T 1kb0_A          470 AWSVEHVSPWNGGTLTTAGNVVFQGTADGRLV  501 (677)
T ss_dssp             EEEEEESSSCCCCEEEETTTEEEEECTTSEEE
T ss_pred             EeecCCCCCCcCcceEeCCCEEEEECCCCcEE
Confidence            99988777777777888888888887665443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.27  E-value=5.5e-12  Score=108.20  Aligned_cols=201  Identities=9%  Similarity=0.079  Sum_probs=115.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCc--ceeeEE
Q 021319           79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIA  156 (314)
Q Consensus        79 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~  156 (314)
                      +..+++++.|+.|..||..+|+....... ....+..+..++..+++++.|+.+..||.++.+.+.......  .+.. .
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~-s   86 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA-S   86 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT-C
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc-C
Confidence            35888999999999999999998776655 444444445677777788899999999998776654433211  1100 0


Q ss_pred             ecc-CCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC
Q 021319          157 WNM-TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP  235 (314)
Q Consensus       157 ~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~  235 (314)
                      ... .+..++++..++.+..|+..+.+.+..+..+.    ...++|++..+++++.|+.|+.||.++++.+..+....  
T Consensus        87 p~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--  160 (369)
T 2hz6_A           87 PCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--  160 (369)
T ss_dssp             SCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--
T ss_pred             ceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--
Confidence            011 34456667778999999988777665554432    23456678889999999999999999887654443221  


Q ss_pred             eEEEEEccCC---cEEEEecCCceEEEEECCCCCeEEEEeccCccce-eEEcCCCC
Q 021319          236 VRTISFSHTG---DYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS-VEWNPKYN  287 (314)
Q Consensus       236 v~~~~~sp~~---~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~-v~~~~~~~  287 (314)
                      ....+++++.   ..++.++.|+.+..||..+|+.+.+.....++.. ..+++++.
T Consensus       161 ~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          161 YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred             ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence            1222334432   5677789999999999999999988776555543 35555553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.26  E-value=3.3e-09  Score=97.94  Aligned_cols=256  Identities=11%  Similarity=0.066  Sum_probs=167.1

Q ss_pred             CCCEEEEeeCCCcEEEeecCCCCCCceeeEEee-cCC--CCEEE-EEEcCCCCCEEEEEeC------CCcEEEEeCCCCc
Q 021319           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHA--DSVDQ-LCWDPKHADLIATASG------DKTVRLWDARSGK  100 (314)
Q Consensus        31 ~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~-~h~--~~v~~-l~~~~~~~~~l~s~~~------D~~v~iwd~~~~~  100 (314)
                      ++..|+.++.|+.|..+|..++.  .+...... ...  ..+.. ...  .+ ..++.++.      ++.|+.+|..+|+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~~p~v--~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~  201 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGK--EVWHQNTFEGQKGSLTITGAPRV--FK-GKVIIGNGGAEYGVRGYITAYDAETGE  201 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCC--EEEEEETTTTCCSSCBCCSCCEE--ET-TEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCC--EEeeecCCcCcCcCcccccCcEE--EC-CEEEEEecccccCCCCEEEEEECCCCc
Confidence            35678888889999999987643  22222221 000  11111 111  12 34444442      7999999999998


Q ss_pred             eeeeEEecCce---------------------------------EEEEEccCCCEEEEEeCCC-----------------
Q 021319          101 CSQQAELSGEN---------------------------------INITYKPDGTHIAVGNRDD-----------------  130 (314)
Q Consensus       101 ~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~d~-----------------  130 (314)
                      .+-........                                 ..++++|++..++++..++                 
T Consensus       202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~  281 (677)
T 1kb0_A          202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY  281 (677)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence            76554432111                                 1367888999999887664                 


Q ss_pred             --cEEEEEccCCeEeeeeccCc----------ceeeEEeccCC---CeEEEEcCCceEEEEeCCCCCceeeeeecc----
Q 021319          131 --ELTILDVRKFKPIHRRKFGY----------EVNEIAWNMTG---EMFFLTTGNGTVEVLTYPSLRPLDTVVAHT----  191 (314)
Q Consensus       131 --~i~i~d~~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----  191 (314)
                        .|..+|.++.+.+..++...          ....+....+|   ..++.+..+|.+++++..+.+.+..+....    
T Consensus       282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~  361 (677)
T 1kb0_A          282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA  361 (677)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence              49999999998877655321          11122223355   567788889999999988777654432110    


Q ss_pred             -------cce------------------------EEEEECCCCCEEEEeeC-----------------------------
Q 021319          192 -------AGC------------------------YCIAIDPMGRYFAVGSA-----------------------------  211 (314)
Q Consensus       192 -------~~i------------------------~~i~~~~~~~~l~t~~~-----------------------------  211 (314)
                             ..+                        ..++++|++.++++...                             
T Consensus       362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (677)
T 1kb0_A          362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (677)
T ss_dssp             EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence                   000                        15688998888776543                             


Q ss_pred             --------------CCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCcc
Q 021319          212 --------------DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM  277 (314)
Q Consensus       212 --------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i  277 (314)
                                    .|.|..||+.+++.+-++.. ..++....+++.+..++.++.|+.++++|..+|+.+..+.....+
T Consensus       442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~  520 (677)
T 1kb0_A          442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV  520 (677)
T ss_dssp             CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             cccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCc
Confidence                          27899999999998776643 334455567788889999999999999999999999988754433


Q ss_pred             --ceeEEcCCCCeeEEE
Q 021319          278 --NSVEWNPKYNLLAYA  292 (314)
Q Consensus       278 --~~v~~~~~~~~la~~  292 (314)
                        .-+.|.++++.++..
T Consensus       521 ~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          521 VAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             CSCCEEEEETTEEEEEE
T ss_pred             ccCCEEEEeCCEEEEEE
Confidence              345666788655433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.25  E-value=9.3e-09  Score=83.05  Aligned_cols=193  Identities=8%  Similarity=0.013  Sum_probs=138.7

Q ss_pred             EEEEEEcCCCCCEEEEEeC--CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEE-eCCCcEEEEEccCCeEeee
Q 021319           69 VDQLCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHR  145 (314)
Q Consensus        69 v~~l~~~~~~~~~l~s~~~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~  145 (314)
                      ...+.|+++ +.+.++.+.  +++|++.|..+++......+........+..+++.|+.. -.++.+.++|..+.+.+.+
T Consensus        23 ~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           23 TQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             EEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             cccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEE
Confidence            578999986 345555543  689999999999988887765543333333345566554 4577899999999998887


Q ss_pred             eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecc-----cceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319          146 RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-----AGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (314)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~t~~~dg~i~vwd~  220 (314)
                      +..+ .......++++..++++..++++.+++..+.+....+....     ..++.+.+. +++..+....++.|.+.|.
T Consensus       102 i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~  179 (266)
T 2iwa_A          102 FTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISA  179 (266)
T ss_dssp             EECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred             EECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEEC
Confidence            7665 22334456688888888889999999998877666654221     136677777 6766666667789999999


Q ss_pred             CCcEEEEEeeecc-------------cCeEEEEEccCCc-EEEEecCCceEEEEECCC
Q 021319          221 SEMLCVRTFTKLE-------------WPVRTISFSHTGD-YIASASEDLFIDISNVHT  264 (314)
Q Consensus       221 ~~~~~~~~~~~~~-------------~~v~~~~~sp~~~-~l~s~s~d~~v~v~~~~~  264 (314)
                      .+++.+..+....             .....|+|+|+++ +++++.....+.+.++..
T Consensus       180 ~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          180 KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            9999888775321             2457899999976 555666778888887654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.23  E-value=5.8e-09  Score=84.26  Aligned_cols=194  Identities=8%  Similarity=0.063  Sum_probs=131.9

Q ss_pred             eeeEEecCc--eEEEEEccCCCEEEEEeC--CCcEEEEEccCCeEeeeeccCcce--eeEEeccCCCeEEEEcCCceEEE
Q 021319          102 SQQAELSGE--NINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEV--NEIAWNMTGEMFFLTTGNGTVEV  175 (314)
Q Consensus       102 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~  175 (314)
                      +....+...  ...+.+++++.+.++.+.  ++.|.++|+.+.+.+.....+...  ..+++. .+..+++.-.++.+.+
T Consensus        12 v~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~v   90 (266)
T 2iwa_A           12 LNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFI   90 (266)
T ss_dssp             EEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred             EEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEE
Confidence            344444432  356888988654444443  578999999999888776654332  233433 2345556667899999


Q ss_pred             EeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc--c---CeEEEEEccCCcEEEE
Q 021319          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE--W---PVRTISFSHTGDYIAS  250 (314)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--~---~v~~~~~sp~~~~l~s  250 (314)
                      ++..+.+.+.++......-  ..+++||+.++++..++.|.++|..+.+.+.++.-..  .   .++.+.|. ++...+.
T Consensus        91 iD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn  167 (266)
T 2iwa_A           91 YDRRTLSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWAN  167 (266)
T ss_dssp             EETTTTEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EECCCCcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEe
Confidence            9998888777664221222  3355577766666678899999999988877765322  1   35678887 7776666


Q ss_pred             ecCCceEEEEECCCCCeEEEEecc--------------CccceeEEcCCCCee-EEEecCCccc
Q 021319          251 ASEDLFIDISNVHTGRTVHQIPCR--------------AAMNSVEWNPKYNLL-AYAGDDKNKY  299 (314)
Q Consensus       251 ~s~d~~v~v~~~~~~~~~~~~~~~--------------~~i~~v~~~~~~~~l-a~~~~d~~~~  299 (314)
                      ...+..|.+.|..+++.+..+...              ...+.++|+|+++.| +++......|
T Consensus       168 ~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          168 IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             cCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            667889999999999999888753              134899999998655 4444555444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.23  E-value=6.8e-09  Score=96.10  Aligned_cols=262  Identities=11%  Similarity=0.091  Sum_probs=166.8

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC--------CCE-EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA--------DSV-DQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~--------~~v-~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      +..+..++.++.|..+|.+++..  +.........        ..+ ..++..   +..|+.++.|+.|..+|..+|+..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~v~v~~~dg~l~AlDa~TG~~~  144 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRL--IWKYDPQSDRHRAGEACCDAVNRGVAVW---KGKVYVGVLDGRLEAIDAKTGQRA  144 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCce--eEEEcCCCCccccccccccCCCCccEEE---CCEEEEEccCCEEEEEECCCCCEe
Confidence            55677777788999999876432  2222211100        001 112222   247788889999999999999877


Q ss_pred             eeEEec-Cc--eEEEEEcc---CCCEEEEEe------CCCcEEEEEccCCeEeeeeccCc--------------------
Q 021319          103 QQAELS-GE--NINITYKP---DGTHIAVGN------RDDELTILDVRKFKPIHRRKFGY--------------------  150 (314)
Q Consensus       103 ~~~~~~-~~--~~~~~~~~---~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~--------------------  150 (314)
                      -..... ..  ...+...|   ++ .++++.      .++.+..+|.++.+.+.+.....                    
T Consensus       145 W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~  223 (689)
T 1yiq_A          145 WSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF  223 (689)
T ss_dssp             EEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred             eeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence            555442 10  00111111   44 444443      36889999999988876543210                    


Q ss_pred             ------------ceeeEEeccCCCeEEEEcCCce-------------------EEEEeCCCCCceeeeee--cc------
Q 021319          151 ------------EVNEIAWNMTGEMFFLTTGNGT-------------------VEVLTYPSLRPLDTVVA--HT------  191 (314)
Q Consensus       151 ------------~~~~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~~~~~~~~~~--~~------  191 (314)
                                  .....++.+....++++..++.                   +..++..+.+.+-.+..  |.      
T Consensus       224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~  303 (689)
T 1yiq_A          224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTA  303 (689)
T ss_dssp             SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCC
T ss_pred             CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccC
Confidence                        0024567778888888887764                   88999888877655543  21      


Q ss_pred             -cceEEEEECCCCC---EEEEeeCCCeEEEeeCCCcEEEEEeeecc--c-------------------------------
Q 021319          192 -AGCYCIAIDPMGR---YFAVGSADSLVSLWDISEMLCVRTFTKLE--W-------------------------------  234 (314)
Q Consensus       192 -~~i~~i~~~~~~~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--~-------------------------------  234 (314)
                       ..+....+..+|+   .++.++.+|.++++|..+++.+.......  +                               
T Consensus       304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p  383 (689)
T 1yiq_A          304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP  383 (689)
T ss_dssp             CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred             CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence             1122223333565   78899999999999999998764322111  0                               


Q ss_pred             ------CeEEEEEccCCcEEEEecC---------------------------------------------CceEEEEECC
Q 021319          235 ------PVRTISFSHTGDYIASASE---------------------------------------------DLFIDISNVH  263 (314)
Q Consensus       235 ------~v~~~~~sp~~~~l~s~s~---------------------------------------------d~~v~v~~~~  263 (314)
                            ....++|+|+..+++..+.                                             ++.+..||..
T Consensus       384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~  463 (689)
T 1yiq_A          384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV  463 (689)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred             CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence                  0123688998887776532                                             4789999999


Q ss_pred             CCCeEEEEeccCccceeEEcCCCCeeEEEecCCccc
Q 021319          264 TGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       264 ~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      +|+.+.+++...+...-.+...+.++++++.|+.++
T Consensus       464 tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~  499 (689)
T 1yiq_A          464 KQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVI  499 (689)
T ss_dssp             TTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEE
T ss_pred             CCCeEeEccCCCCccCccceECCCEEEEECCCCcEE
Confidence            999999988777777667777888888888775433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.22  E-value=1.3e-08  Score=94.21  Aligned_cols=259  Identities=11%  Similarity=0.113  Sum_probs=165.1

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC---CEEE-EEEcCCCCCEEEEEe------CCCcEEEEeCCCCce
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQ-LCWDPKHADLIATAS------GDKTVRLWDARSGKC  101 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~---~v~~-l~~~~~~~~~l~s~~------~D~~v~iwd~~~~~~  101 (314)
                      +..++.++.|+.|..+|.+++.  .+.......+..   .+.. -.+. + + .++.++      .++.|..||..+|+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~--~~W~~~~~~~~~~~~~~~~sP~v~-~-g-~v~vg~~~~~~~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQ--RAWSVDTRADHKRSYTITGAPRVV-N-G-KVVIGNGGAEFGVRGYVTAYDAETGKE  195 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC--EEEEEECCSCTTSCCBCCSCCEEE-T-T-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CCEEEEEccCCEEEEEECCCCC--EeeeecCcCCCCCCccccCCcEEE-C-C-EEEEEeCCCccCCCCEEEEEECCCCcE
Confidence            4578888899999999987643  222222210111   1110 0111 2 3 343443      378999999999987


Q ss_pred             eeeEEecC-------------------------------ce-EEEEEccCCCEEEEEeCCCc------------------
Q 021319          102 SQQAELSG-------------------------------EN-INITYKPDGTHIAVGNRDDE------------------  131 (314)
Q Consensus       102 ~~~~~~~~-------------------------------~~-~~~~~~~~~~~l~~~~~d~~------------------  131 (314)
                      .-......                               .. ..+++.|++..++++..++.                  
T Consensus       196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~  275 (689)
T 1yiq_A          196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS  275 (689)
T ss_dssp             EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred             EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            65443210                               00 13678888999999887763                  


Q ss_pred             -EEEEEccCCeEeeeeccC-c---------ceeeEEeccCCC---eEEEEcCCceEEEEeCCCCCceeeeeecc------
Q 021319          132 -LTILDVRKFKPIHRRKFG-Y---------EVNEIAWNMTGE---MFFLTTGNGTVEVLTYPSLRPLDTVVAHT------  191 (314)
Q Consensus       132 -i~i~d~~~~~~~~~~~~~-~---------~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------  191 (314)
                       |..+|.++.+.+...+.. .         +........++.   .++.+..+|.+++++..+.+.+.......      
T Consensus       276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  355 (689)
T 1yiq_A          276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG  355 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence             999999999888765432 1         111111222443   67777889999999988776652211000      


Q ss_pred             -------------------------------c--ceEEEEECCCCCEEEEeeC---------------------------
Q 021319          192 -------------------------------A--GCYCIAIDPMGRYFAVGSA---------------------------  211 (314)
Q Consensus       192 -------------------------------~--~i~~i~~~~~~~~l~t~~~---------------------------  211 (314)
                                                     +  .-..++++|+..++++...                           
T Consensus       356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  435 (689)
T 1yiq_A          356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR  435 (689)
T ss_dssp             EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred             cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence                                           0  0113688888877776522                           


Q ss_pred             ------------------CCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319          212 ------------------DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       212 ------------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~  273 (314)
                                        +|.|+.||+.+++.+-++..+. ++..-.++..+.+++.|+.|+.+++||..+|+.+.++..
T Consensus       436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence                              3789999999999887765443 333345667888999999999999999999999998875


Q ss_pred             cCcc--ceeEEcCCCCe-eEEEecCC
Q 021319          274 RAAM--NSVEWNPKYNL-LAYAGDDK  296 (314)
Q Consensus       274 ~~~i--~~v~~~~~~~~-la~~~~d~  296 (314)
                      ...+  .-+.|..+|+. +++.+..+
T Consensus       515 ~~~~~~~p~ty~~~G~qyv~~~~G~g  540 (689)
T 1yiq_A          515 ASGVMAAPVTYSVDGEQYVTFMAGWG  540 (689)
T ss_dssp             SSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             CCCcccCceEEEECCEEEEEEEecCC
Confidence            4333  45777788864 44444433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.22  E-value=1e-09  Score=97.48  Aligned_cols=221  Identities=13%  Similarity=0.113  Sum_probs=153.2

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeeeEEe--cCceEEEEE-c-cCCCEEEEEeC------------------CCcEEE
Q 021319           77 KHADLIATASGDKTVRLWDARSGKCSQQAEL--SGENINITY-K-PDGTHIAVGNR------------------DDELTI  134 (314)
Q Consensus        77 ~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~~-~-~~~~~l~~~~~------------------d~~i~i  134 (314)
                      ++..++++...+.+|.+.|+.+.++.....+  ....-.+++ . |+++++++++.                  ++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            3444556666678899999999998885554  334556776 4 99999998852                  457999


Q ss_pred             EEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCc--------------------------------------eEEEE
Q 021319          135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG--------------------------------------TVEVL  176 (314)
Q Consensus       135 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------------------------~~~~~  176 (314)
                      .|..+.+...++..+.....++.++++..+++++.+.                                      .+.++
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI  259 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  259 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence            9999998888887765777888999999888887542                                      24555


Q ss_pred             eCCC--CCc-eeeeeecccceEEEEECCCCCEEEEee-CCCeEEEeeCCCcE------------EEEEeeecccCeEEEE
Q 021319          177 TYPS--LRP-LDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEML------------CVRTFTKLEWPVRTIS  240 (314)
Q Consensus       177 ~~~~--~~~-~~~~~~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~~------------~~~~~~~~~~~v~~~~  240 (314)
                      |...  .+. +..+. -...+.++.++|||+++++++ .+.+|.++|+.+.+            ...+.. .......++
T Consensus       260 D~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~a  337 (595)
T 1fwx_A          260 DGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTA  337 (595)
T ss_dssp             ECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEE
T ss_pred             eCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEE
Confidence            5544  222 22222 233567899999999866554 56899999998653            233332 233578899


Q ss_pred             EccCCcEEEEecCCceEEEEECCC----------CCeEEEEeccCc------cceeEEcCCCCeeEEEec-CCccc
Q 021319          241 FSHTGDYIASASEDLFIDISNVHT----------GRTVHQIPCRAA------MNSVEWNPKYNLLAYAGD-DKNKY  299 (314)
Q Consensus       241 ~sp~~~~l~s~s~d~~v~v~~~~~----------~~~~~~~~~~~~------i~~v~~~~~~~~la~~~~-d~~~~  299 (314)
                      |+|+|...++.-.|+.|.+|++.+          ...+.+++-.-.      -..+..+|||++|.+... .+.+|
T Consensus       338 F~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          338 FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             ECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence            999995445566799999999877          445555553221      245577899999988775 33555

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=9.4e-10  Score=93.30  Aligned_cols=230  Identities=14%  Similarity=0.093  Sum_probs=144.8

Q ss_pred             ecccccEEEEEECCCCCEEEEeeC-----CCcEEEeecCCCCCCceeeEEee----cCCCCEEEEEEcCCCCCEEEEEe-
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSV-----DQTARVWHIEPHGHGKVKDIELR----GHADSVDQLCWDPKHADLIATAS-   86 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~-----D~~v~iw~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~-   86 (314)
                      .+|...+..++++++|.++++-..     ++.|.+||+.+..  ....+.+.    .+...+..+++++.++.+.++-. 
T Consensus        63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence            356778999999999987665433     5789999986432  12222332    12234688999876555556665 


Q ss_pred             --CCCcEEEEeCCCCceeeeEEec-C-ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCC
Q 021319           87 --GDKTVRLWDARSGKCSQQAELS-G-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE  162 (314)
Q Consensus        87 --~D~~v~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                        .++.|.+||..+++..+....+ . ......+.++|..+.+...++.+..|.             .....++++++++
T Consensus       141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~  207 (343)
T 2qe8_A          141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENE  207 (343)
T ss_dssp             SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-------------CCEEEEEECTTSC
T ss_pred             cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee-------------cccceeEeccCCC
Confidence              6889999999888754433110 0 000023344666666666666654442             1356789999998


Q ss_pred             eEEEEcCCc-eEEEEeCC---CCC-----cee--eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee
Q 021319          163 MFFLTTGNG-TVEVLTYP---SLR-----PLD--TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK  231 (314)
Q Consensus       163 ~~~~~~~~g-~~~~~~~~---~~~-----~~~--~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~  231 (314)
                      .++++...+ .+..++..   ...     ...  ...++...+..++++++|+++++...++.|.+||..+++.......
T Consensus       208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~  287 (343)
T 2qe8_A          208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD  287 (343)
T ss_dssp             EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC
Confidence            777665444 66665532   110     000  1123444567899999999999988899999999855553222221


Q ss_pred             c-ccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319          232 L-EWPVRTISFSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       232 ~-~~~v~~~~~sp~~~~l~s~s~d~~v~v~~  261 (314)
                      . -..+..++|.|++.++++.+....+.++.
T Consensus       288 ~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          288 EKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             GGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             CceecCCeeEECCCCcEEEEeCccccccccc
Confidence            1 23578999999999888887665554443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.19  E-value=7e-09  Score=92.18  Aligned_cols=232  Identities=15%  Similarity=0.117  Sum_probs=158.4

Q ss_pred             CCCCEEEEee-CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEE-c-CCCCCEEEEEe------------------CC
Q 021319           30 CTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D-PKHADLIATAS------------------GD   88 (314)
Q Consensus        30 ~~g~~l~s~~-~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-~~~~~~l~s~~------------------~D   88 (314)
                      +||+++..+. .+..|.+.|+++...  ...++++. ......+++ . |+. .+++.++                  .+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~--~~ii~ip~-g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKC--DAILEIPN-AKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEE--EEEEECSS-CCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceE--eeEEeCCC-CCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccC
Confidence            3787765554 566799999876432  11123332 234677777 4 665 4555553                  34


Q ss_pred             CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC--------------------------------------
Q 021319           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD--------------------------------------  130 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--------------------------------------  130 (314)
                      +.+.+.|..+.+...+....++.-.++++|+|+++++.+.+.                                      
T Consensus       175 ~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          175 NVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             ceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            688999999998888888766677788999999999888553                                      


Q ss_pred             cEEEEEccC--CeE-eeeeccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCCCC------------ceeeeeecccce
Q 021319          131 ELTILDVRK--FKP-IHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLR------------PLDTVVAHTAGC  194 (314)
Q Consensus       131 ~i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~------------~~~~~~~~~~~i  194 (314)
                      .+.+.|.++  .+. +..+..+.....+.++|+|++++++. ...++.+++..+.+            ....+ .-..++
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP  333 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGP  333 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCE
T ss_pred             cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCc
Confidence            466777766  333 34455556778899999999887775 67899999987542            11111 223568


Q ss_pred             EEEEECCCCCEEEEeeCCCeEEEeeCCC----------cEEEEEeeecccCe-----EEEEEccCCcEEEEec---CCce
Q 021319          195 YCIAIDPMGRYFAVGSADSLVSLWDISE----------MLCVRTFTKLEWPV-----RTISFSHTGDYIASAS---EDLF  256 (314)
Q Consensus       195 ~~i~~~~~~~~l~t~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v-----~~~~~sp~~~~l~s~s---~d~~  256 (314)
                      ..++|+|+|...++.-.|++|.+||+.+          ...+.++..+-.+-     ..+.++|||++|+++.   .|..
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence            9999999995566778899999999976          55666665443321     1234689999999884   4553


Q ss_pred             E----------EEEECCCCC
Q 021319          257 I----------DISNVHTGR  266 (314)
Q Consensus       257 v----------~v~~~~~~~  266 (314)
                      +          .++|+..++
T Consensus       414 ~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          414 LNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CCCCSSCCEEEEEEECSSSS
T ss_pred             ccCCCCCCCcceEEEcCCCc
Confidence            2          778886544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.18  E-value=1.4e-08  Score=81.15  Aligned_cols=188  Identities=15%  Similarity=0.184  Sum_probs=130.1

Q ss_pred             eeeEEecCce--EEEEEccCCCEEEEEeCCC--cEEEEEccCCeEeeeeccCcceeeEEeccCCC-eEEEEcCCceEEEE
Q 021319          102 SQQAELSGEN--INITYKPDGTHIAVGNRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE-MFFLTTGNGTVEVL  176 (314)
Q Consensus       102 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~  176 (314)
                      +...++....  -.+.|+ ++.+..+.+.++  .|..+|+.+.+.+.+...+.........+.++ .+++.-.++.+.++
T Consensus        34 v~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           34 VHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             EEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             EEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            3444444444  346676 666666666665  79999999999888877665543333333444 44555568999999


Q ss_pred             eCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc-----cCeEEEEEccCCcEEEEe
Q 021319          177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTISFSHTGDYIASA  251 (314)
Q Consensus       177 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~s~  251 (314)
                      |..+.+.+.++.... .-..++  ++++.|+.++.++.|.++|..+.+.+.++....     ..++.+.|. +|+..|..
T Consensus       113 D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~  188 (262)
T 3nol_A          113 NIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV  188 (262)
T ss_dssp             ETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             ECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence            999988887775322 223333  567777777667889999999988887765421     234567776 78777666


Q ss_pred             cCCceEEEEECCCCCeEEEEecc-------------CccceeEEcCCCCeeEEEec
Q 021319          252 SEDLFIDISNVHTGRTVHQIPCR-------------AAMNSVEWNPKYNLLAYAGD  294 (314)
Q Consensus       252 s~d~~v~v~~~~~~~~~~~~~~~-------------~~i~~v~~~~~~~~la~~~~  294 (314)
                      -.+..|.+.|..+|+.+..+...             ...+.+||+|+.+.|..+|.
T Consensus       189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            67889999999999999888642             13489999998776666663

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.15  E-value=2.4e-08  Score=79.80  Aligned_cols=181  Identities=13%  Similarity=0.097  Sum_probs=131.9

Q ss_pred             EEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEe-CCCcEEEEEccCCeEeee
Q 021319           69 VDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHR  145 (314)
Q Consensus        69 v~~l~~~~~~~~~l~s~~~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~  145 (314)
                      ...|.|+ + +.+..|.+.+|  +|+++|+.+++......+..........+++..|.... .++.+.++|..+.+.+.+
T Consensus        45 tqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4778887 3 46777877765  99999999999988887766654433344555665554 578899999999998888


Q ss_pred             eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeec--c---cceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319          146 RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH--T---AGCYCIAIDPMGRYFAVGSADSLVSLWDI  220 (314)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~---~~i~~i~~~~~~~~l~t~~~dg~i~vwd~  220 (314)
                      +..+.+-..+  .+++..++.+.+++++.++|..+.+.+..+...  .   ..++.+.+. +|+..|..-.+..|.+.|.
T Consensus       123 i~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp  199 (262)
T 3nol_A          123 FNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDP  199 (262)
T ss_dssp             EECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECT
T ss_pred             EECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEEC
Confidence            7765443344  467788888888899999998888776665432  1   234566766 6777776667889999999


Q ss_pred             CCcEEEEEeeec------------ccCeEEEEEccCCcEEEEecCC
Q 021319          221 SEMLCVRTFTKL------------EWPVRTISFSHTGDYIASASED  254 (314)
Q Consensus       221 ~~~~~~~~~~~~------------~~~v~~~~~sp~~~~l~s~s~d  254 (314)
                      .+++.+..+...            ..-.+.|||+|+++.|+..++.
T Consensus       200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            999988776531            1235789999998777766654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.14  E-value=2.6e-08  Score=85.38  Aligned_cols=252  Identities=12%  Similarity=0.120  Sum_probs=154.4

Q ss_pred             CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCc
Q 021319           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE  110 (314)
Q Consensus        31 ~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~  110 (314)
                      ++..+..++.++.|..+|.+++.  ......+.+..  .......   +..++.++.++.+..+|..+|+..........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~--~~W~~~~~~~~--~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~  174 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGT--VAWQTKVAGEA--LSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMP  174 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCC--EEEEEECSSCC--CSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC--EEEEEeCCCce--EcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence            35577778889999999987543  22222222111  1111121   24677888999999999999987765554332


Q ss_pred             eE------EEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcce-----e---eEEec--cCCCeEEEEcCCceEE
Q 021319          111 NI------NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV-----N---EIAWN--MTGEMFFLTTGNGTVE  174 (314)
Q Consensus       111 ~~------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~---~~~~~--~~~~~~~~~~~~g~~~  174 (314)
                      ..      ....  .+..++++..++.+..+|.++.+.+.......+.     .   .+...  ..+..++++..++.+.
T Consensus       175 ~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~  252 (376)
T 3q7m_A          175 SLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT  252 (376)
T ss_dssp             ----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred             ceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence            21      1111  2456788888999999999988877655432110     0   00001  1246677777889999


Q ss_pred             EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc-CeEEEEEccCCcEEEEecC
Q 021319          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASE  253 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~s~  253 (314)
                      .++..+.+.+....  ......+..  ++..+..++.++.+..+|..+++.+-....... .......  .+..|+.++.
T Consensus       253 ~~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~  326 (376)
T 3q7m_A          253 ALDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDS  326 (376)
T ss_dssp             EEETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred             EEECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence            99987776554432  122334444  356777788899999999999987655542211 1121222  3577888999


Q ss_pred             CceEEEEECCCCCeEEEEec-cCccce-eEEcCCCCeeEEEecCCccc
Q 021319          254 DLFIDISNVHTGRTVHQIPC-RAAMNS-VEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       254 d~~v~v~~~~~~~~~~~~~~-~~~i~~-v~~~~~~~~la~~~~d~~~~  299 (314)
                      ++.+.++|..+|+.+..... ...+.+ ... . +..|..++.++.+|
T Consensus       327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~-~~~l~v~~~~G~l~  372 (376)
T 3q7m_A          327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-A-DGKLLIQAKDGTVY  372 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCTTCBCSCCEE-E-TTEEEEEBTTSCEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCcceeCCEE-E-CCEEEEEeCCCEEE
Confidence            99999999999999887764 333332 222 2 34555677665544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.10  E-value=4.8e-11  Score=102.34  Aligned_cols=177  Identities=11%  Similarity=0.003  Sum_probs=97.2

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccc-eE-E
Q 021319          119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CY-C  196 (314)
Q Consensus       119 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-i~-~  196 (314)
                      ++..+++++.|+.+..||..+.+.+.+.+. ..+.+.....++..+++++.++.++.|+..+.+.+..+..+... +. .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            577899999999999999999988877665 34444334456667777789999999998766654443322111 10 0


Q ss_pred             EEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCc
Q 021319          197 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA  276 (314)
Q Consensus       197 i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~  276 (314)
                      ..+. .+..+++++.++.+..||..+++.+.++..+.    ...++|++..+++++.|+.+..||..+|+.+..+.... 
T Consensus        87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-  160 (369)
T 2hz6_A           87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-  160 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred             ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence            0111 34567788889999999999998876665433    24567899999999999999999999999887764321 


Q ss_pred             cceeEEcCCC---CeeEEEecCCcccccc
Q 021319          277 MNSVEWNPKY---NLLAYAGDDKNKYQAD  302 (314)
Q Consensus       277 i~~v~~~~~~---~~la~~~~d~~~~~~~  302 (314)
                      ....++.++.   ..+..++.|+..+-++
T Consensus       161 ~~~~~~~~~~~~~~~v~~~~~dg~v~a~d  189 (369)
T 2hz6_A          161 YAASLPEDDVDYKMSHFVSNGDGLVVTVD  189 (369)
T ss_dssp             ECCBCCCCCTTCCCCEEEEETSCEEEEEC
T ss_pred             ccCccccCCccccceEEEECCCCEEEEEE
Confidence            2333344432   4555677776555433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.08  E-value=2e-07  Score=79.85  Aligned_cols=254  Identities=9%  Similarity=0.022  Sum_probs=154.3

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecC-------CCCEE-EEEEcCCCCCEEEEEeCCCcEEEEeCCCCceee
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-------ADSVD-QLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h-------~~~v~-~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~  103 (314)
                      +..+..++.++.|..+|.+++.  ......+...       ...+. ....  . ...++.++.++.|..+|..+|+..-
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~v~~~~g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGK--EIWSVSLAEKDGWFSKEPALLSGGVTV--S-GGHVYIGSEKAQVYALNTSDGTVAW  127 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC--EEEEEECCC---CCSCCCCCEEEEEEE--E-TTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCc--eeeeecCccccccccccCcccccCceE--e-CCEEEEEcCCCEEEEEECCCCCEEE
Confidence            5678888888999999987543  2222232211       12232 2222  2 2467788899999999999998776


Q ss_pred             eEEecCceEE-EEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCccee------eEEeccCCCeEEEEcCCceEEEE
Q 021319          104 QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN------EIAWNMTGEMFFLTTGNGTVEVL  176 (314)
Q Consensus       104 ~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~  176 (314)
                      .......... ...  .+..+++++.++.+..+|.++.+.+..........      ...  ..+..++++..++.+..+
T Consensus       128 ~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~--~~~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          128 QTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPT--TAFGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             EEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCE--EETTEEEECCTTTEEEEE
T ss_pred             EEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcE--EECCEEEEEcCCCEEEEE
Confidence            5554433221 111  24578888899999999999888776655432221      111  124567777888999999


Q ss_pred             eCCCCCceeeeeeccc-c---eEE---EEECC--CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE
Q 021319          177 TYPSLRPLDTVVAHTA-G---CYC---IAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY  247 (314)
Q Consensus       177 ~~~~~~~~~~~~~~~~-~---i~~---i~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  247 (314)
                      +..+.+.+........ .   +..   +...|  .+..+..++.++.+..+|..+++.+.....  .....+.  .++..
T Consensus       204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~--~~~~~  279 (376)
T 3q7m_A          204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFI--VDGNR  279 (376)
T ss_dssp             ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEE--EETTE
T ss_pred             ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCce--EECCE
Confidence            9877765544332110 0   000   00111  245667777899999999999887655432  1233333  34677


Q ss_pred             EEEecCCceEEEEECCCCCeEEEEec-c-CccceeEEcCCCCeeEEEecCCcccc
Q 021319          248 IASASEDLFIDISNVHTGRTVHQIPC-R-AAMNSVEWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~~~~~~~~~~-~-~~i~~v~~~~~~~~la~~~~d~~~~~  300 (314)
                      |..++.++.+..+|..+|+.+..... . ....+....  +..|..++.++.++-
T Consensus       280 l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~  332 (376)
T 3q7m_A          280 IYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHW  332 (376)
T ss_dssp             EEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEE
Confidence            88888899999999999998877652 1 123333332  345556666655443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.07  E-value=2.7e-07  Score=73.08  Aligned_cols=183  Identities=14%  Similarity=0.135  Sum_probs=130.9

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCC--CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEE-EEeCCCcEEEEEccCCeEe
Q 021319           67 DSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPI  143 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~  143 (314)
                      .-...|.|++  +.+..|.+.+  ++|+.+|+.+++......+..........+.+..|. +.-.++.+.++|..+.+.+
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            3467899986  4566777775  499999999999988887766554433333455555 4456788999999999999


Q ss_pred             eeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecc-----cceEEEEECCCCCEEEEeeCCCeEEEe
Q 021319          144 HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-----AGCYCIAIDPMGRYFAVGSADSLVSLW  218 (314)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~t~~~dg~i~vw  218 (314)
                      .++..+..-..+  .+++..++++..++.+.++|..+.+.+..+....     ..++.+.+. +|+..|..-.+..|.+.
T Consensus        99 ~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vI  175 (243)
T 3mbr_X           99 ARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARI  175 (243)
T ss_dssp             EEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEE
Confidence            888766544444  4567888888889999999988887766654321     234566655 67766666567799999


Q ss_pred             eCCCcEEEEEeeec-------------ccCeEEEEEccCCcEEEEecCC
Q 021319          219 DISEMLCVRTFTKL-------------EWPVRTISFSHTGDYIASASED  254 (314)
Q Consensus       219 d~~~~~~~~~~~~~-------------~~~v~~~~~sp~~~~l~s~s~d  254 (314)
                      |..+++.+..+.-.             ..-.+.||++|+++.|+..++-
T Consensus       176 Dp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          176 DPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             CTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             ECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            99999988776521             1245789999987766655543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.05  E-value=9.5e-08  Score=76.35  Aligned_cols=175  Identities=11%  Similarity=0.085  Sum_probs=124.0

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccC-CCeEEEEcCCceEEEEeCCCCCceeeeeecc
Q 021319          113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT-GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT  191 (314)
Q Consensus       113 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  191 (314)
                      .+.|. ++.+.++.+.++.|.++|+++.+.+... .+.........+. +..+++.-.++.+.+||..+.+.+.++... 
T Consensus        59 GL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-  135 (268)
T 3nok_A           59 GLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-  135 (268)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-
T ss_pred             eEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-
Confidence            45565 4556667777888999999998887776 5544333222333 355566667899999999998888777532 


Q ss_pred             cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc-----cCeEEEEEccCCcEEEEecCCceEEEEECCCCC
Q 021319          192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTISFSHTGDYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       192 ~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~  266 (314)
                      ..-..++  ++++.|+.+..++.|.++|..+.+.+.++....     ..++.+.|. +|+..|..-.+..|.+.|..+|+
T Consensus       136 ~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~  212 (268)
T 3nok_A          136 GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT  212 (268)
T ss_dssp             SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred             CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence            2223444  567787777778899999999998887765422     134667776 78777666678899999999999


Q ss_pred             eEEEEecc--------------CccceeEEcCCCCeeEEEe
Q 021319          267 TVHQIPCR--------------AAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       267 ~~~~~~~~--------------~~i~~v~~~~~~~~la~~~  293 (314)
                      .+..+...              ...|.|||+|+++.|..+|
T Consensus       213 V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          213 VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            99888642              2458999999765554444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.03  E-value=2.6e-07  Score=73.18  Aligned_cols=176  Identities=12%  Similarity=0.120  Sum_probs=122.4

Q ss_pred             EEEEccCCCEEEEEeCC--CcEEEEEccCCeEeeeeccCcceeeEEeccC-CCeEEEEcCCceEEEEeCCCCCceeeeee
Q 021319          113 NITYKPDGTHIAVGNRD--DELTILDVRKFKPIHRRKFGYEVNEIAWNMT-GEMFFLTTGNGTVEVLTYPSLRPLDTVVA  189 (314)
Q Consensus       113 ~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  189 (314)
                      .+.|.. +.+..+.+.+  +.|..+|+.+.+.+.+...+.........+. +..+++.-.++.+.+++..+.+.+.++..
T Consensus        25 GL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~  103 (243)
T 3mbr_X           25 GLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY  103 (243)
T ss_dssp             EEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred             cEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence            466765 4455555554  4799999999998887766544433322333 44555566789999999999888877653


Q ss_pred             cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc-----cCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319          190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTISFSHTGDYIASASEDLFIDISNVHT  264 (314)
Q Consensus       190 ~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~  264 (314)
                      - ..-..++  +++..|+++..++.|.++|..+.+.+.+++...     ..++.+.+. +|+..|..-.+..|.+.|..+
T Consensus       104 ~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          104 P-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             S-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred             C-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC
Confidence            2 2334444  456666666678899999999998887765432     235566664 777666665678999999999


Q ss_pred             CCeEEEEecc--------------CccceeEEcCCCCeeEEEe
Q 021319          265 GRTVHQIPCR--------------AAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       265 ~~~~~~~~~~--------------~~i~~v~~~~~~~~la~~~  293 (314)
                      |+.+..+...              ...|.+||+|++..|..+|
T Consensus       180 G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          180 GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            9999887632              1358999999766665555

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.02  E-value=1.3e-07  Score=75.54  Aligned_cols=179  Identities=11%  Similarity=0.009  Sum_probs=129.8

Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEE-EEeCCCcEEEEEccCCeEeeeec
Q 021319           69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRK  147 (314)
Q Consensus        69 v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~  147 (314)
                      ...|.|+.  +.+..+.+.++.|+++|+.+++..... +..........+++..|. +.-.++.+.++|..+.+.+.++.
T Consensus        57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            46788873  567888999999999999999988877 666554422333444444 45567889999999999988877


Q ss_pred             cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeee--ccc---ceEEEEECCCCCEEEEeeCCCeEEEeeCCC
Q 021319          148 FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA--HTA---GCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (314)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~---~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~  222 (314)
                      ...+-..++  +++..++.+..++++.++|..+.+.+..+..  +..   .++.+.+. +|+..|..-.+..|.+.|..+
T Consensus       134 ~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T  210 (268)
T 3nok_A          134 YSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPAT  210 (268)
T ss_dssp             CSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT
T ss_pred             CCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCC
Confidence            655444444  5678888888899999999888877666543  222   34666766 777666666788999999999


Q ss_pred             cEEEEEeeec-------------ccCeEEEEEccCCcEEEEecC
Q 021319          223 MLCVRTFTKL-------------EWPVRTISFSHTGDYIASASE  253 (314)
Q Consensus       223 ~~~~~~~~~~-------------~~~v~~~~~sp~~~~l~s~s~  253 (314)
                      ++.+..+.-.             ..-.+.||++|+++.|+..++
T Consensus       211 G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          211 GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9988776421             124578999998765555444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.98  E-value=3.2e-07  Score=84.59  Aligned_cols=268  Identities=10%  Similarity=0.055  Sum_probs=149.9

Q ss_pred             EEEECC-CCCEEEEeeCCC-----------cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe-CCCcE
Q 021319           25 SVAWNC-TGTKLASGSVDQ-----------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-GDKTV   91 (314)
Q Consensus        25 ~v~~s~-~g~~l~s~~~D~-----------~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~D~~v   91 (314)
                      .+++.+ +++.++.||.+.           .+.+||..+.......... ..+.....++++.++ +.+++.|+ .+..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~-g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGN-GQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECTT-SCEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-CCCCCccccccCCCC-CCEEEeCCCCCCce
Confidence            445566 888888887643           5778888765433322221 112233334555555 46777887 45689


Q ss_pred             EEEeCCCCceeeeEEecCc--eEEEEEccCCCEEEEEe-CC-----CcEEEEEccCCeEeeeec-----cCcceeeEEec
Q 021319           92 RLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGN-RD-----DELTILDVRKFKPIHRRK-----FGYEVNEIAWN  158 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-~d-----~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~  158 (314)
                      .+||..+++......+...  ...++..++++.++.|+ .+     ..+.+||+.+.+......     .........+.
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence            9999987765443322211  22455667999999988 34     468999998765433210     00000011122


Q ss_pred             cCCCeEEEEcCCc---------eEEEEeCCCCCceeeeeeccc---------ceEEEEEC-CCCCEEEEeeCCC------
Q 021319          159 MTGEMFFLTTGNG---------TVEVLTYPSLRPLDTVVAHTA---------GCYCIAID-PMGRYFAVGSADS------  213 (314)
Q Consensus       159 ~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~---------~i~~i~~~-~~~~~l~t~~~dg------  213 (314)
                      .++..++++..+|         .+..|+............+..         .-.++.+. .++++++.|+.++      
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~  427 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  427 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence            4455566665444         345566544332211111111         12344443 4788888888643      


Q ss_pred             -----eEEEeeCCCcEEEEEe--e-ecccCeEEEEEccCCcEEEEecCC-----------ceEEEEECCCCCeEEEEe--
Q 021319          214 -----LVSLWDISEMLCVRTF--T-KLEWPVRTISFSHTGDYIASASED-----------LFIDISNVHTGRTVHQIP--  272 (314)
Q Consensus       214 -----~i~vwd~~~~~~~~~~--~-~~~~~v~~~~~sp~~~~l~s~s~d-----------~~v~v~~~~~~~~~~~~~--  272 (314)
                           .|.+||..+.......  . .....-.+....|++++++.|+.+           ..+.+||..+.+=. .+.  
T Consensus       428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~-~~~~~  506 (656)
T 1k3i_A          428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY-KQNPN  506 (656)
T ss_dssp             CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE-ECCCC
T ss_pred             CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee-ecCCC
Confidence                 6889998766543322  1 111112344566899999999865           45789998764321 121  


Q ss_pred             -c-cCccceeEEcCCCCeeEEEecC
Q 021319          273 -C-RAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       273 -~-~~~i~~v~~~~~~~~la~~~~d  295 (314)
                       . +..-.++.+.|++++++.||..
T Consensus       507 ~~~R~~hs~a~ll~dg~v~v~GG~~  531 (656)
T 1k3i_A          507 SIVRVYHSISLLLPDGRVFNGGGGL  531 (656)
T ss_dssp             SSCCCTTEEEEECTTSCEEEEECCC
T ss_pred             CCccccccHhhcCCCcEEEecCCCC
Confidence             1 1222345667999999999853

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.98  E-value=2.3e-06  Score=71.53  Aligned_cols=240  Identities=10%  Similarity=-0.008  Sum_probs=145.7

Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee------------------cCCCCEEEEEEcCCC
Q 021319           17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR------------------GHADSVDQLCWDPKH   78 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~------------------~h~~~v~~l~~~~~~   78 (314)
                      .+.-....+++|+++|+++.++..++.|..|+.+..   ........                  .....+..+++.+.+
T Consensus        15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS---GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTT---CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCC---ceEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            343345678889999997888888899998876532   12211110                  011347889998733


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeEE-ec----CceEEEEEcc-CCCEEEEEeC-----------------CCcEEEE
Q 021319           79 ADLIATASGDKTVRLWDARSGKCSQQAE-LS----GENINITYKP-DGTHIAVGNR-----------------DDELTIL  135 (314)
Q Consensus        79 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~l~~~~~-----------------d~~i~i~  135 (314)
                      ++++ .+...+.+..+|..++....... ..    .....+++.+ +|+..++...                 ++.+..+
T Consensus        92 g~l~-v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           92 NQLY-IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             TEEE-EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             CcEE-EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            4444 45455568889877654322111 11    2245688899 8876665432                 2568888


Q ss_pred             EccCCeEeeeeccCcceeeEEeccCCCeEEEE-cCCceEEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeC-
Q 021319          136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSA-  211 (314)
Q Consensus       136 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-  211 (314)
                      |....+.............++++++++.++++ ...+.|..++.....  ....+....+ +..++++++|++.++... 
T Consensus       171 d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~  249 (322)
T 2fp8_A          171 DPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEE  249 (322)
T ss_dssp             ETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEE
T ss_pred             eCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCc
Confidence            87655432222222345678999999855555 667899999876421  1122222223 788999999987666544 


Q ss_pred             ---------CCeEEEeeCCCcEEEEEeeecc----cCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319          212 ---------DSLVSLWDISEMLCVRTFTKLE----WPVRTISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       212 ---------dg~i~vwd~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                               .+.|..+|.. ++.+..+....    ..+..+++ .++++.++......|.+++..
T Consensus       250 ~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          250 LDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             ccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence                     4678888864 66665554332    23555666 567766666677788888764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.97  E-value=2.5e-06  Score=69.27  Aligned_cols=219  Identities=9%  Similarity=0.034  Sum_probs=137.2

Q ss_pred             ccEEEEEECCCCCEEE-EeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~-s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      ..+..++|++++..|. +-..++.|..++.+...   .. ..+.........+++++.++.+.++-...+.|.+++....
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---cE-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence            4577999999765544 55567889999876422   11 1122223467889999876666677777889999998654


Q ss_pred             ceeeeEEec-CceEEEEEccCCCEEEEEeC---CCcEEEEEccCCe--EeeeeccCcceeeEEeccCCCeE-EEEcCCce
Q 021319          100 KCSQQAELS-GENINITYKPDGTHIAVGNR---DDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMF-FLTTGNGT  172 (314)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~  172 (314)
                      ......... .....+++.|++..|+++..   .+.|..+++....  .+.. ........+++++++..+ ++-...+.
T Consensus       112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~  190 (267)
T 1npe_A          112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (267)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence            322222212 35677899997666665554   3578777765322  1111 112346788999976554 55556789


Q ss_pred             EEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc-CeEEEEEccCCc
Q 021319          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW-PVRTISFSHTGD  246 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~  246 (314)
                      +..++........... ....+..++++ .+.++++...++.|..+|..+++.+.++..... ....+++.|++.
T Consensus       191 I~~~~~~g~~~~~~~~-~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          191 AECLNPAQPGRRKVLE-GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEETTEEEEEEEEE-CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEecCCCceEEEec-CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            9999876433222222 22345677765 344455555668999999999988887754332 356678888764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.96  E-value=1e-06  Score=79.73  Aligned_cols=256  Identities=10%  Similarity=0.041  Sum_probs=155.5

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC--CEEE-EEEcCCCCCEEEEEeC------CCcEEEEeCCCCcee
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVDQ-LCWDPKHADLIATASG------DKTVRLWDARSGKCS  102 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~--~v~~-l~~~~~~~~~l~s~~~------D~~v~iwd~~~~~~~  102 (314)
                      +..++.++.|+.|..+|..++.  .+....+..+..  .+.. ...  .++ .++.++.      ++.|..+|..+|+..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~P~v--~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGK--INWEVEVCDPKVGSTLTQAPFV--AKD-TVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC--EEEEEECCCGGGTCBCCSCCEE--ETT-EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCC--EEEEecCCCCCccceeccCCEE--ECC-EEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            4567777789999999887643  223333322211  1111 011  123 4444443      799999999999876


Q ss_pred             eeEEecCce---------------------------------------EEEEEccCCCEEEEEeCC--------------
Q 021319          103 QQAELSGEN---------------------------------------INITYKPDGTHIAVGNRD--------------  129 (314)
Q Consensus       103 ~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~d--------------  129 (314)
                      -........                                       ..+++.++...++.+..+              
T Consensus       190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence            554432211                                       124566777777777642              


Q ss_pred             --CcEEEEEccCCeEeeeeccCc----------ceeeEEeccCCC---eEEEEcCCceEEEEeCCCCCceeeeeecc---
Q 021319          130 --DELTILDVRKFKPIHRRKFGY----------EVNEIAWNMTGE---MFFLTTGNGTVEVLTYPSLRPLDTVVAHT---  191 (314)
Q Consensus       130 --~~i~i~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---  191 (314)
                        +.+..+|.++.+.+...+...          ...-+....+++   .++.+..+|.+.+++..+.+.+.......   
T Consensus       270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~  349 (571)
T 2ad6_A          270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN  349 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc
Confidence              258999999988877655321          111111223553   56677888999999987766554332110   


Q ss_pred             ----------cce--------------------------EEEEECCCCCEEEEee-------------------------
Q 021319          192 ----------AGC--------------------------YCIAIDPMGRYFAVGS-------------------------  210 (314)
Q Consensus       192 ----------~~i--------------------------~~i~~~~~~~~l~t~~-------------------------  210 (314)
                                .++                          ..++++|+..++++..                         
T Consensus       350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  429 (571)
T 2ad6_A          350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence                      000                          2357888777666543                         


Q ss_pred             ------------CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccc
Q 021319          211 ------------ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMN  278 (314)
Q Consensus       211 ------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~  278 (314)
                                  .+|.+..||..+++.+-++... .++....+...+..++.++.|+.++++|..+|+.+.++.....+.
T Consensus       430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~  508 (571)
T 2ad6_A          430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI  508 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             eeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence                        3578999999999877665432 222222233456677779999999999999999999887654432


Q ss_pred             --eeEEcCCCCeeEEEe
Q 021319          279 --SVEWNPKYNLLAYAG  293 (314)
Q Consensus       279 --~v~~~~~~~~la~~~  293 (314)
                        -+.+.++++.++...
T Consensus       509 ~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          509 GSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             SCCEEEEETTEEEEEEE
T ss_pred             eeeEEEEECCEEEEEEE
Confidence              345557777654433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.94  E-value=5.2e-07  Score=83.24  Aligned_cols=263  Identities=12%  Similarity=0.071  Sum_probs=161.3

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC--------CCE-EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA--------DSV-DQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~--------~~v-~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      +..+..++.++.|.-+|.+++..  +.........        ..+ ..++..   +..++.++.|+.|..+|..+|+..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~  140 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKE--LWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAI  140 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEECCCChh--ceEECCCCCccccccccccCCccceEEE---CCEEEEEcCCCEEEEEECCCCCEe
Confidence            45666677788888888765432  2222211100        001 112222   246778889999999999999877


Q ss_pred             eeEEecCc--eEEEEEcc--CCCEEEEEeC------CCcEEEEEccCCeEeeeeccC--cc-------------------
Q 021319          103 QQAELSGE--NINITYKP--DGTHIAVGNR------DDELTILDVRKFKPIHRRKFG--YE-------------------  151 (314)
Q Consensus       103 ~~~~~~~~--~~~~~~~~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~--~~-------------------  151 (314)
                      -.......  ...+...|  .+..++++..      ++.+..+|.++.+.+.+....  .+                   
T Consensus       141 W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  220 (668)
T 1kv9_A          141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD  220 (668)
T ss_dssp             EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred             eeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence            65544211  00000011  1335555543      578999999998887665421  00                   


Q ss_pred             -----------eeeEEeccCCCeEEEEcCCce-------------------EEEEeCCCCCceeeeee--cc-------c
Q 021319          152 -----------VNEIAWNMTGEMFFLTTGNGT-------------------VEVLTYPSLRPLDTVVA--HT-------A  192 (314)
Q Consensus       152 -----------~~~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~~~~~~~~~~--~~-------~  192 (314)
                                 ....++.+....++++..++.                   +..++..+.+.+-.+..  |.       .
T Consensus       221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~  300 (668)
T 1kv9_A          221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ  300 (668)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence                       013566777778888877663                   88888888776655542  21       2


Q ss_pred             ceEEEEECCCCC---EEEEeeCCCeEEEeeCCCcEEEEEeeecc--c----------C----------------------
Q 021319          193 GCYCIAIDPMGR---YFAVGSADSLVSLWDISEMLCVRTFTKLE--W----------P----------------------  235 (314)
Q Consensus       193 ~i~~i~~~~~~~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--~----------~----------------------  235 (314)
                      ++....+..+|+   .++.++.+|.+.++|..+++.+...+...  +          +                      
T Consensus       301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~  380 (668)
T 1kv9_A          301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA  380 (668)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred             CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccc
Confidence            222233333565   68899999999999999998774332111  0          0                      


Q ss_pred             --eEEEEEccCCcEEEEe------------------------------------cCCceEEEEECCCCCeEEEEeccCcc
Q 021319          236 --VRTISFSHTGDYIASA------------------------------------SEDLFIDISNVHTGRTVHQIPCRAAM  277 (314)
Q Consensus       236 --v~~~~~sp~~~~l~s~------------------------------------s~d~~v~v~~~~~~~~~~~~~~~~~i  277 (314)
                        ...++++|+..++...                                    ..++.|..||..+|+.+.+.+.....
T Consensus       381 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~  460 (668)
T 1kv9_A          381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHW  460 (668)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred             cCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCC
Confidence              0125778876665531                                    23488999999999999888776666


Q ss_pred             ceeEEcCCCCeeEEEecCCccc
Q 021319          278 NSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       278 ~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      ....+...+.++++++.|+.++
T Consensus       461 ~~~~~~t~gg~vf~g~~dg~l~  482 (668)
T 1kv9_A          461 NGGTLSTAGNLVFQGTAAGQMH  482 (668)
T ss_dssp             CCCEEEETTTEEEEECTTSEEE
T ss_pred             cCceeEeCCCEEEEECCcccch
Confidence            6666777788888887665433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.91  E-value=1.5e-06  Score=80.24  Aligned_cols=256  Identities=12%  Similarity=0.128  Sum_probs=157.3

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC--CCEEE-EEEcCCCCCEEEEEeC------CCcEEEEeCCCCcee
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA--DSVDQ-LCWDPKHADLIATASG------DKTVRLWDARSGKCS  102 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~--~~v~~-l~~~~~~~~~l~s~~~------D~~v~iwd~~~~~~~  102 (314)
                      +..++.++.|+.|..+|.+++.  .+.........  ..+.. ...  .++ .++.+..      ++.|..+|..+|+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~P~v--~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~  191 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGK--AIWSQQTTDPAKPYSITGAPRV--VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLA  191 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCC--EEEEEECSCTTSSCBCCSCCEE--ETT-EEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCC--EeeeeccCCCCCcceecCCCEE--ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence            4567788889999999987643  22222221110  01110 011  122 4444432      589999999999876


Q ss_pred             eeEEecC---c----------------------------e-EEEEEccCCCEEEEEeCCC-------------------c
Q 021319          103 QQAELSG---E----------------------------N-INITYKPDGTHIAVGNRDD-------------------E  131 (314)
Q Consensus       103 ~~~~~~~---~----------------------------~-~~~~~~~~~~~l~~~~~d~-------------------~  131 (314)
                      -......   .                            . ..+++.|+...++++..++                   .
T Consensus       192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~  271 (668)
T 1kv9_A          192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS  271 (668)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            5553210   0                            0 1257888888998887765                   3


Q ss_pred             EEEEEccCCeEeeeeccC----------cceeeEEeccCCC---eEEEEcCCceEEEEeCCCCCceeeeeecc-------
Q 021319          132 LTILDVRKFKPIHRRKFG----------YEVNEIAWNMTGE---MFFLTTGNGTVEVLTYPSLRPLDTVVAHT-------  191 (314)
Q Consensus       132 i~i~d~~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------  191 (314)
                      |..+|+++.+.+...+..          .+........+++   .++++..+|.+++++..+.+.+.......       
T Consensus       272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~  351 (668)
T 1kv9_A          272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV  351 (668)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE
T ss_pred             EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccc
Confidence            999999999888766542          1111112223454   57777889999999887776552211100       


Q ss_pred             ----cc-------------------------eEEEEECCCCCEEEEe---------------------------------
Q 021319          192 ----AG-------------------------CYCIAIDPMGRYFAVG---------------------------------  209 (314)
Q Consensus       192 ----~~-------------------------i~~i~~~~~~~~l~t~---------------------------------  209 (314)
                          ..                         -..++++|+...+...                                 
T Consensus       352 d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (668)
T 1kv9_A          352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV  431 (668)
T ss_dssp             CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred             ccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCC
Confidence                00                         0126777776655431                                 


Q ss_pred             ---eCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCcc--ceeEEcC
Q 021319          210 ---SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM--NSVEWNP  284 (314)
Q Consensus       210 ---~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i--~~v~~~~  284 (314)
                         ..+|.|..||+.+++.+-+.... .+.....+...+.+++.++.|+.++++|..+|+.+..+.....+  .-+.+..
T Consensus       432 p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~  510 (668)
T 1kv9_A          432 PAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL  510 (668)
T ss_dssp             CGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEE
Confidence               12488999999999887665433 23333445567888999999999999999999999888754433  2344555


Q ss_pred             CCC-eeEEEe
Q 021319          285 KYN-LLAYAG  293 (314)
Q Consensus       285 ~~~-~la~~~  293 (314)
                      +++ +++.++
T Consensus       511 ~G~~yva~~~  520 (668)
T 1kv9_A          511 AGRQYVAIMA  520 (668)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            665 444444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.90  E-value=2.6e-06  Score=77.04  Aligned_cols=265  Identities=15%  Similarity=0.072  Sum_probs=157.2

Q ss_pred             CCEEEEeeC-CCcEEEeec-CCCCCCceeeEEeecCCC--------CE-EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319           32 GTKLASGSV-DQTARVWHI-EPHGHGKVKDIELRGHAD--------SV-DQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (314)
Q Consensus        32 g~~l~s~~~-D~~v~iw~~-~~~~~~~~~~~~~~~h~~--------~v-~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~  100 (314)
                      +..+..++. ++.|.-+|. +++.  .+....+.....        .+ ..++..   +..++.++.|+.+..+|..+|+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~  136 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGK--IVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGK  136 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTS--EEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCcc--EEEEEcCCCCccccccccccccccccEEE---CCEEEEEeCCCEEEEEECCCCC
Confidence            345555555 788888887 5543  222222221100        00 112222   2467788889999999999998


Q ss_pred             eeeeEEecCce--EEEEEcc--CCCEEEEEeC------CCcEEEEEccCCeEeeeeccCcce------------------
Q 021319          101 CSQQAELSGEN--INITYKP--DGTHIAVGNR------DDELTILDVRKFKPIHRRKFGYEV------------------  152 (314)
Q Consensus       101 ~~~~~~~~~~~--~~~~~~~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~------------------  152 (314)
                      ..-........  ..+...|  .+..++++..      ++.+..+|.++.+.+.+.......                  
T Consensus       137 ~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~  216 (571)
T 2ad6_A          137 INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ  216 (571)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred             EEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence            77655443210  0011111  1345566654      789999999998887665432211                  


Q ss_pred             ---------------------eeEEeccCCCeEEEEcCC----------------ceEEEEeCCCCCceeeeee--cc--
Q 021319          153 ---------------------NEIAWNMTGEMFFLTTGN----------------GTVEVLTYPSLRPLDTVVA--HT--  191 (314)
Q Consensus       153 ---------------------~~~~~~~~~~~~~~~~~~----------------g~~~~~~~~~~~~~~~~~~--~~--  191 (314)
                                           ..+++.+....++++..+                +.+..++..+.+.+-.+..  |.  
T Consensus       217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~  296 (571)
T 2ad6_A          217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW  296 (571)
T ss_dssp             SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred             cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence                                 123444555566666542                3588888877776554432  11  


Q ss_pred             -----cceEEEEECCCCC---EEEEeeCCCeEEEeeCCCcEEEEEeeecc-------------cCe--------------
Q 021319          192 -----AGCYCIAIDPMGR---YFAVGSADSLVSLWDISEMLCVRTFTKLE-------------WPV--------------  236 (314)
Q Consensus       192 -----~~i~~i~~~~~~~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-------------~~v--------------  236 (314)
                           ..+.-+....+|+   .++.++.+|.+.++|..+++.+..+....             .++              
T Consensus       297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~  376 (571)
T 2ad6_A          297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT  376 (571)
T ss_dssp             CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred             ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence                 1122223334674   67788999999999999998775543211             111              


Q ss_pred             ------------EEEEEccCCcEEEEec-------------------------------------CCceEEEEECCCCCe
Q 021319          237 ------------RTISFSHTGDYIASAS-------------------------------------EDLFIDISNVHTGRT  267 (314)
Q Consensus       237 ------------~~~~~sp~~~~l~s~s-------------------------------------~d~~v~v~~~~~~~~  267 (314)
                                  ..++++|+..+|+..+                                     .++.+..+|..+|+.
T Consensus       377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~  456 (571)
T 2ad6_A          377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA  456 (571)
T ss_dssp             EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred             EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence                        2357888877766553                                     358899999999999


Q ss_pred             EEEEeccCccceeEEcCCCCeeEEEecCCccccc
Q 021319          268 VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA  301 (314)
Q Consensus       268 ~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~  301 (314)
                      +.+++....+.+......+..+..++.|+.++-+
T Consensus       457 ~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~  490 (571)
T 2ad6_A          457 KWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKAL  490 (571)
T ss_dssp             EEEEEESSCCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred             EEEecCCCCccceeEEECCCEEEEEcCCCeEEEE
Confidence            9888766655555444456666667777555443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.90  E-value=5e-06  Score=69.53  Aligned_cols=227  Identities=12%  Similarity=0.081  Sum_probs=136.9

Q ss_pred             EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEE--------------------ecCceEEEEEccC
Q 021319           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE--------------------LSGENINITYKPD  119 (314)
Q Consensus        60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~--------------------~~~~~~~~~~~~~  119 (314)
                      +.+.+.-.....++|+++ ++++.++..++.|..||..++.......                    ....+..+++.++
T Consensus        12 i~~~g~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~   90 (322)
T 2fp8_A           12 ILIEAPSYAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ   90 (322)
T ss_dssp             EEEECSSSCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred             eecCCccCCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence            344444445567888886 4667778889999999987665432111                    0124567888873


Q ss_pred             CCEEEEEeCCCcEEEEEccCCe--Eeeeecc---CcceeeEEecc-CCCeEEEEcC-----------------CceEEEE
Q 021319          120 GTHIAVGNRDDELTILDVRKFK--PIHRRKF---GYEVNEIAWNM-TGEMFFLTTG-----------------NGTVEVL  176 (314)
Q Consensus       120 ~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~-----------------~g~~~~~  176 (314)
                      ...|+++...+.+..+|....+  .+.....   ......++..+ ++..+++...                 .+.+..+
T Consensus        91 ~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           91 NNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             TTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             CCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            3445555555668888876432  1211111   12357788888 8887776543                 3667777


Q ss_pred             eCCCCCceeeeeecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcE--EEEEeeecccCeEEEEEccCCcEEEEecC
Q 021319          177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEML--CVRTFTKLEWPVRTISFSHTGDYIASASE  253 (314)
Q Consensus       177 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~s~  253 (314)
                      +....+. ..+.........++++|+++.|..+ ..++.|..|++....  ....+..... ...++++++|.+.++...
T Consensus       171 d~~~~~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          171 DPSTKET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             ETTTTEE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             eCCCCEE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            6543332 2222222346789999999866555 556889999986421  1112211223 678999999987776654


Q ss_pred             ----------CceEEEEECCCCCeEEEEecc-----CccceeEEcCCCCeeEE
Q 021319          254 ----------DLFIDISNVHTGRTVHQIPCR-----AAMNSVEWNPKYNLLAY  291 (314)
Q Consensus       254 ----------d~~v~v~~~~~~~~~~~~~~~-----~~i~~v~~~~~~~~la~  291 (314)
                                .+.|..++. .++.+..+...     ..+.++++ .++.++++
T Consensus       249 ~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~  299 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIG  299 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEE
T ss_pred             cccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEe
Confidence                      467888886 47777766532     23566666 34554443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.90  E-value=4.5e-07  Score=75.86  Aligned_cols=254  Identities=14%  Similarity=0.038  Sum_probs=149.9

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      ...+.++...++|...+ ++.+  |..+|.. .  ........  ...........   ...+..++.++.+..+|.. +
T Consensus        59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~~-g--~~~~~~~~--~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g  126 (330)
T 3hxj_A           59 EIIECRPSIGKDGTIYF-GSDK--VYAINPD-G--TEKWRFDT--KKAIVSDFTIF---EDILYVTSMDGHLYAINTD-G  126 (330)
T ss_dssp             GEEEECCEETTTTEECC-SSCE--EEEECCC-G--GGGGGSCC-------CCEEEE---TTEEEEECTTSEEEEECTT-S
T ss_pred             CCcccceEEecCCcEEE-ecCc--EEEECCC-C--cEEEEEEC--CCCcccCceEE---CCEEEEEecCCEEEEEcCC-C
Confidence            34556777777775444 4433  7777642 1  11111111  11111222222   2456778889999999988 7


Q ss_pred             ceeeeEEecCce-EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319          100 KCSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNGTVEVLT  177 (314)
Q Consensus       100 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (314)
                      +........... ..+...+++. +++++.++.+..+|.. .+.+...... ..+..+....++..++ ++  +.+..++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d  201 (330)
T 3hxj_A          127 TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN  201 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC
T ss_pred             CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC
Confidence            655444433322 2344555665 6677788999999988 6555444332 2344455555666544 44  7788888


Q ss_pred             CCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceE
Q 021319          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI  257 (314)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v  257 (314)
                       ...+.+.........+.++..+++|.+.+ ++.++.+..+|. ++..+..+......+..+.+.+++. |..++.++.+
T Consensus       202 -~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl  277 (330)
T 3hxj_A          202 -PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHL  277 (330)
T ss_dssp             -TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEE
T ss_pred             -CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCE
Confidence             55554444444445578888888886554 566777888885 4555555543333344455655664 5567788889


Q ss_pred             EEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCC
Q 021319          258 DISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       258 ~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      ..+|. +++.+..+.. ...+.++...+++.+.+ ++.++
T Consensus       278 ~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G  315 (330)
T 3hxj_A          278 YAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNG  315 (330)
T ss_dssp             EEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTS
T ss_pred             EEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCC
Confidence            99996 7787776654 34577888877777654 66553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.89  E-value=1.1e-07  Score=79.55  Aligned_cols=254  Identities=12%  Similarity=0.020  Sum_probs=150.2

Q ss_pred             EEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE
Q 021319           26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (314)
Q Consensus        26 v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~  105 (314)
                      .....++ .|..++.++.|..|| ....  ..  .....+...+.++...++  ..+..++.+  +..+|. +++.....
T Consensus        25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~--~~--~~~~~~~~~~~~~~~~~~--g~l~v~t~~--l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           25 PILAKNG-TIYLGSSNKNLYAIN-TDGS--VK--WFFKSGEIIECRPSIGKD--GTIYFGSDK--VYAINP-DGTEKWRF   93 (330)
T ss_dssp             CEECTTS-CEECSSTTTTTEEEC-TTSC--EE--ESSCGGGEEEECCEETTT--TEECCSSCE--EEEECC-CGGGGGGS
T ss_pred             ceEccCC-eEEEEcCCCEEEEEC-CCCc--EE--EEEecCCCcccceEEecC--CcEEEecCc--EEEECC-CCcEEEEE
Confidence            3344445 456667788888888 4422  11  112222333455666544  245555554  888886 55443322


Q ss_pred             EecCceE-EEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc
Q 021319          106 ELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP  183 (314)
Q Consensus       106 ~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  183 (314)
                      ....... ...+.  +..+.+++.++.+..+|.. .+........ ..+..+...+++. +.++..++.+..++.. .+.
T Consensus        94 ~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~  168 (330)
T 3hxj_A           94 DTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE  168 (330)
T ss_dssp             CC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCE
T ss_pred             ECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE
Confidence            2222111 12222  5667888888999999987 5555443332 2234444444555 5567777889999877 555


Q ss_pred             eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319          184 LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       184 ~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      +..+......+.++.+++++.+.+..   +.+..+| .+++.+..+......+.++...++|.+.+ ++.++.+..++ .
T Consensus       169 ~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~-~  242 (330)
T 3hxj_A          169 KWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAIN-P  242 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEEC-T
T ss_pred             eEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEEC-C
Confidence            44444444556778888888866544   7799999 67666655554445577788888876555 66677787777 4


Q ss_pred             CCCeEEEEeccC-ccceeEEcCCCCeeEEEecCCcccccc
Q 021319          264 TGRTVHQIPCRA-AMNSVEWNPKYNLLAYAGDDKNKYQAD  302 (314)
Q Consensus       264 ~~~~~~~~~~~~-~i~~v~~~~~~~~la~~~~d~~~~~~~  302 (314)
                      +++.+..+.... .+.++...+++.+ ..++.++.++.++
T Consensus       243 ~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~ggl~~~d  281 (330)
T 3hxj_A          243 DGTEKWRFKTGKRIESSPVIGNTDTI-YFGSYDGHLYAIN  281 (330)
T ss_dssp             TSCEEEEEECSSCCCSCCEECTTSCE-EEECTTCEEEEEC
T ss_pred             CCCEeEEeeCCCCccccceEcCCCeE-EEecCCCCEEEEC
Confidence            677776665433 3455666655654 4566665555544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.84  E-value=6.2e-05  Score=70.95  Aligned_cols=276  Identities=11%  Similarity=0.076  Sum_probs=173.0

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee-----cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-----GHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      ...|.++...++|..-+ |..++-|..|+.....   .......     -....|.++...+++ + |..|..++-|..|
T Consensus       309 ~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~---~~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~  382 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNR---FKNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLY  382 (795)
T ss_dssp             SSCEEEEEECTTSCEEE-EESSSCEEEECGGGGS---SEEECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEE
T ss_pred             CCcEEEEEEeCCcCEEE-EECCCCeEEeCCCccc---ceEEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEE
Confidence            35799999998887544 5555667777754321   1111110     023568898887654 3 5567788889999


Q ss_pred             eCCCCceeeeEE--------e-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-----cCcceeeEEeccC
Q 021319           95 DARSGKCSQQAE--------L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----FGYEVNEIAWNMT  160 (314)
Q Consensus        95 d~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~  160 (314)
                      |..++.......        + ...+.++...++++.|.+|+.++.+..+|..+.+...-..     ....+.++...++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~  462 (795)
T 4a2l_A          383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE  462 (795)
T ss_dssp             CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred             cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence            988776543211        1 2334567777788767888888889999987654322111     1235677777777


Q ss_pred             CCeEEEEcCCceEEEEeCCCCCceeeee-------ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee---
Q 021319          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVV-------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT---  230 (314)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~---  230 (314)
                      +...+...  +.+..++....+. ..+.       .....|.++..+++|++.+...  +.+..||..+.+.  .+.   
T Consensus       463 g~lwigt~--~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~  535 (795)
T 4a2l_A          463 GNLWLGTL--SALVRFNPEQRSF-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASIL  535 (795)
T ss_dssp             SCEEEEES--SCEEEEETTTTEE-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCS
T ss_pred             CCEEEEec--CceeEEeCCCCeE-EEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCC
Confidence            77666554  3466777544321 1111       1234689999999998766443  4588899877655  232   


Q ss_pred             ----ecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-----cCccceeEEcCCCCeeEEEecCCccccc
Q 021319          231 ----KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-----RAAMNSVEWNPKYNLLAYAGDDKNKYQA  301 (314)
Q Consensus       231 ----~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-----~~~i~~v~~~~~~~~la~~~~d~~~~~~  301 (314)
                          .....|.++...++|.+.++.. . -+..+|..+++ +..+..     ...|.++...+++++.+++..--..|.+
T Consensus       536 ~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~~Gl~~~~~  612 (795)
T 4a2l_A          536 PVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ-IKRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNP  612 (795)
T ss_dssp             CSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE-EEEECGGGTCSCSCEEEEEECTTSCEEEEETTEEEEEET
T ss_pred             CCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc-EEEeCCCCCCchhheEEEEECCCCCEEEEcCCceEEEcC
Confidence                1234688999999998776544 3 47788876654 333332     2358888888888887666433344556


Q ss_pred             ccceEEeccc
Q 021319          302 DEGVFRIYGF  311 (314)
Q Consensus       302 ~~~~~~~~~~  311 (314)
                      +.+.++.|+.
T Consensus       613 ~~~~~~~~~~  622 (795)
T 4a2l_A          613 ETEKFRNFTE  622 (795)
T ss_dssp             TTTEEEEECG
T ss_pred             CCCcEEEcCC
Confidence            6778887754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.83  E-value=6.6e-06  Score=74.57  Aligned_cols=264  Identities=15%  Similarity=0.036  Sum_probs=153.6

Q ss_pred             CCEEEEeeC-CCcEEEeec-CCCCCCceeeEEeecCC---------CCEEEEEEcCCCC---CEEEEEeCCCcEEEEeCC
Q 021319           32 GTKLASGSV-DQTARVWHI-EPHGHGKVKDIELRGHA---------DSVDQLCWDPKHA---DLIATASGDKTVRLWDAR   97 (314)
Q Consensus        32 g~~l~s~~~-D~~v~iw~~-~~~~~~~~~~~~~~~h~---------~~v~~l~~~~~~~---~~l~s~~~D~~v~iwd~~   97 (314)
                      +..+..++. ++.|.-+|. ++..  .+.........         .....+++.|.++   ..|+.++.|+.+.-+|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~--~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGT--ILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTS--EEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCc--EEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence            345556666 788888887 5543  22222221110         0011234433222   236778899999999999


Q ss_pred             CCceeeeEEecC-----ceEE-EEEccCCCEEEEEe------CCCcEEEEEccCCeEeeeeccCcce-------------
Q 021319           98 SGKCSQQAELSG-----ENIN-ITYKPDGTHIAVGN------RDDELTILDVRKFKPIHRRKFGYEV-------------  152 (314)
Q Consensus        98 ~~~~~~~~~~~~-----~~~~-~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~-------------  152 (314)
                      +|+..-......     .... -.. .++ .++++.      .++.|..+|.++.+.+.+.....+.             
T Consensus       140 TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~  217 (599)
T 1w6s_A          140 TGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (599)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence            998765554332     1110 011 134 455554      3789999999998887665443211             


Q ss_pred             --------------------------eeEEeccCCCeEEEEcCC----------------ceEEEEeCCCCCceeeeeec
Q 021319          153 --------------------------NEIAWNMTGEMFFLTTGN----------------GTVEVLTYPSLRPLDTVVAH  190 (314)
Q Consensus       153 --------------------------~~~~~~~~~~~~~~~~~~----------------g~~~~~~~~~~~~~~~~~~~  190 (314)
                                                ...++.+....++++..+                +.+..++..+.+.+-.++..
T Consensus       218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~  297 (599)
T 1w6s_A          218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT  297 (599)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred             ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence                                      022344566677777665                37888888877765544322


Q ss_pred             cc---------ceEEEEEC-CCC---CEEEEeeCCCeEEEeeCCCcEEEEEeeecc-------------cCe--------
Q 021319          191 TA---------GCYCIAID-PMG---RYFAVGSADSLVSLWDISEMLCVRTFTKLE-------------WPV--------  236 (314)
Q Consensus       191 ~~---------~i~~i~~~-~~~---~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-------------~~v--------  236 (314)
                      ..         ...-+... .+|   +.++.++.+|.+.++|..+++.+-......             .++        
T Consensus       298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~  377 (599)
T 1w6s_A          298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR  377 (599)
T ss_dssp             TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred             CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence            11         11222332 567   567889999999999999998775543111             011        


Q ss_pred             ------------------EEEEEccCCcEEEEe---------------------------------c------CCceEEE
Q 021319          237 ------------------RTISFSHTGDYIASA---------------------------------S------EDLFIDI  259 (314)
Q Consensus       237 ------------------~~~~~sp~~~~l~s~---------------------------------s------~d~~v~v  259 (314)
                                        ..++++|+..+++..                                 +      .++.+..
T Consensus       378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A  457 (599)
T 1w6s_A          378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA  457 (599)
T ss_dssp             TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred             CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence                              235677776655442                                 1      4578999


Q ss_pred             EECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCccc
Q 021319          260 SNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                      ||..+|+.+.+.+...+..+-.....+.++..++.|+.++
T Consensus       458 ~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~  497 (599)
T 1w6s_A          458 YNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLK  497 (599)
T ss_dssp             ECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEE
T ss_pred             EECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEE
Confidence            9999999998887554443322333455666677665443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.80  E-value=3.6e-05  Score=69.69  Aligned_cols=255  Identities=13%  Similarity=0.118  Sum_probs=152.5

Q ss_pred             CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC--CEE---EEEEcCCCCC-EEEEEe------CCCcEEEEeCCCC
Q 021319           32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVD---QLCWDPKHAD-LIATAS------GDKTVRLWDARSG   99 (314)
Q Consensus        32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~--~v~---~l~~~~~~~~-~l~s~~------~D~~v~iwd~~~~   99 (314)
                      +..++.++.|+.|..+|.+++.  .+....+..+..  .+.   .+.=....+. .++.++      .++.|.-+|..+|
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~--~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG  194 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGK--VVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG  194 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCC--EEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred             CCEEEEEeCCCEEEEEECCCCC--EEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence            4567777888999888887643  222222222110  011   1111101111 555554      3789999999999


Q ss_pred             ceeeeEEecCce------------------------------------------EEEEEccCCCEEEEEeC---------
Q 021319          100 KCSQQAELSGEN------------------------------------------INITYKPDGTHIAVGNR---------  128 (314)
Q Consensus       100 ~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~l~~~~~---------  128 (314)
                      +..-........                                          ..+++.|+...++++..         
T Consensus       195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~  274 (582)
T 1flg_A          195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA  274 (582)
T ss_dssp             CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred             CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence            876543321100                                          12456677778887763         


Q ss_pred             -----------C----CcEEEEEccCCeEeeeeccCcc-------e-eeEEec---cCCC---eEEEEcCCceEEEEeCC
Q 021319          129 -----------D----DELTILDVRKFKPIHRRKFGYE-------V-NEIAWN---MTGE---MFFLTTGNGTVEVLTYP  179 (314)
Q Consensus       129 -----------d----~~i~i~d~~~~~~~~~~~~~~~-------~-~~~~~~---~~~~---~~~~~~~~g~~~~~~~~  179 (314)
                                 |    +.|..+|+++.+.+...+....       . ..+...   .+++   .++.+..+|.+++++..
T Consensus       275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~  354 (582)
T 1flg_A          275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS  354 (582)
T ss_dssp             GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred             cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence                       2    5799999999988877653211       0 112222   3553   67778899999999987


Q ss_pred             CCCceeeeeecc------------cc---------------------------------eEEEEECCCCCEEEEee----
Q 021319          180 SLRPLDTVVAHT------------AG---------------------------------CYCIAIDPMGRYFAVGS----  210 (314)
Q Consensus       180 ~~~~~~~~~~~~------------~~---------------------------------i~~i~~~~~~~~l~t~~----  210 (314)
                      +.+.+.......            ..                                 -..++++|+...+++..    
T Consensus       355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~  434 (582)
T 1flg_A          355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK  434 (582)
T ss_dssp             TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred             CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence            766554332110            00                                 01346677655544432    


Q ss_pred             -----------------------------CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319          211 -----------------------------ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       211 -----------------------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~  261 (314)
                                                   .+|.|..||+.+++.+-+..... ++..-.....+.+++.++.|+.++.+|
T Consensus       435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEE
Confidence                                         35789999999998775554321 222112223467788899999999999


Q ss_pred             CCCCCeEEEEeccCccce--eEEcCCCCee
Q 021319          262 VHTGRTVHQIPCRAAMNS--VEWNPKYNLL  289 (314)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~--v~~~~~~~~l  289 (314)
                      ..+|+.+.++.....+.+  +.+..+++..
T Consensus       514 ~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          514 AKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence            999999999876555543  6777787644

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.77  E-value=4.6e-05  Score=63.14  Aligned_cols=223  Identities=13%  Similarity=0.046  Sum_probs=133.4

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC-C-cEEEEeCCC
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-K-TVRLWDARS   98 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D-~-~v~iwd~~~   98 (314)
                      .....++|+++|.++++-..++.|..|+.+.   ......   .-...+..+++.+++ +++++.... + .|..+|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g---~~~~~~---~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG---NQQIHA---TVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC---CEEEEE---ECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC---ceEEEE---eCCCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCC
Confidence            5678999999999877777788888887653   111111   123457889999875 465554432 2 466678777


Q ss_pred             CceeeeEEecC--ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE-eee--------eccC--cceeeEEeccCCCeE-
Q 021319           99 GKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHR--------RKFG--YEVNEIAWNMTGEMF-  164 (314)
Q Consensus        99 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~--------~~~~--~~~~~~~~~~~~~~~-  164 (314)
                      ++.........  ....++..+++..+++-...+.|..+|....+. +..        ....  ...+.+  ++++..+ 
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            76544333211  122344445554444444578888888765321 110        0000  123344  6777655 


Q ss_pred             EEEcCCceEEEEeCCC-CCc--eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE--EEeeecccCeEEE
Q 021319          165 FLTTGNGTVEVLTYPS-LRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV--RTFTKLEWPVRTI  239 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~-~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~  239 (314)
                      ++-...+.+..++... .+.  ...+ .....+..++++++|++.++....+.|.++|.. ++..  ..+...-....++
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~-~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~  260 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV  260 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEE-eccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence            4455678999998754 211  1111 112346778999999987777777899999975 4432  2222222457889


Q ss_pred             EEc---cCCcEEEEecCC
Q 021319          240 SFS---HTGDYIASASED  254 (314)
Q Consensus       240 ~~s---p~~~~l~s~s~d  254 (314)
                      +|.   |+++.|+.++..
T Consensus       261 a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          261 AFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EECCSTTTTTEEEEEECT
T ss_pred             EEecccCCCCEEEEECCC
Confidence            998   887766655443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.76  E-value=1.2e-05  Score=72.95  Aligned_cols=253  Identities=13%  Similarity=0.077  Sum_probs=151.5

Q ss_pred             EEEeeCCCcEEEeecCCCCCCceeeEEeecCCC--CEEE-EEEcCCCCCEEEEEe------CCCcEEEEeCCCCceeeeE
Q 021319           35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVDQ-LCWDPKHADLIATAS------GDKTVRLWDARSGKCSQQA  105 (314)
Q Consensus        35 l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~--~v~~-l~~~~~~~~~l~s~~------~D~~v~iwd~~~~~~~~~~  105 (314)
                      |+.++.|+.|..+|..++.  .+....+..+..  .+.. -... . + .++.++      .++.|+-+|..+|+..-..
T Consensus       124 V~v~t~dg~l~AlDa~TG~--~~W~~~~~~~~~~~~~~ssP~v~-~-g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~  198 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGE--TVWKVENSDIKVGSTLTIAPYVV-K-D-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (599)
T ss_dssp             EEEECTTSEEEEEETTTCC--EEEEEECCCGGGTCBCCSCCEEE-T-T-EEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCC--EEEeecCCCCCccceeecCCEEE-C-C-EEEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence            7778889999888887643  222223222110  1111 0111 2 3 444444      3899999999999876554


Q ss_pred             EecCce---------------------------------------EEEEEccCCCEEEEEeCCC----------------
Q 021319          106 ELSGEN---------------------------------------INITYKPDGTHIAVGNRDD----------------  130 (314)
Q Consensus       106 ~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~d~----------------  130 (314)
                      ......                                       ..+++.++...++.+..+.                
T Consensus       199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~  278 (599)
T 1w6s_A          199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM  278 (599)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred             cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccc
Confidence            432211                                       1245667788888887653                


Q ss_pred             cEEEEEccCCeEeeeeccCcc------e--eeEEec---cCC---CeEEEEcCCceEEEEeCCCCCceeeeeec------
Q 021319          131 ELTILDVRKFKPIHRRKFGYE------V--NEIAWN---MTG---EMFFLTTGNGTVEVLTYPSLRPLDTVVAH------  190 (314)
Q Consensus       131 ~i~i~d~~~~~~~~~~~~~~~------~--~~~~~~---~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------  190 (314)
                      .+..+|+++.+.+...+....      .  .-+...   .++   ..++.+..+|.+.+++..+.+.+......      
T Consensus       279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~  358 (599)
T 1w6s_A          279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF  358 (599)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence            799999999888776654311      0  111121   356   45666788999999998777655433210      


Q ss_pred             ------cc-c--------------------------eEEEEECCCCCEEEEe----------------------------
Q 021319          191 ------TA-G--------------------------CYCIAIDPMGRYFAVG----------------------------  209 (314)
Q Consensus       191 ------~~-~--------------------------i~~i~~~~~~~~l~t~----------------------------  209 (314)
                            .+ .                          -..++++|+..++++.                            
T Consensus       359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  438 (599)
T 1w6s_A          359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM  438 (599)
T ss_dssp             EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence                  00 0                          0235666665555432                            


Q ss_pred             -----e------CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCcc-
Q 021319          210 -----S------ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM-  277 (314)
Q Consensus       210 -----~------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i-  277 (314)
                           +      .+|.+..||+.+++.+-+... ..+...-.....+.+++.++.|+.++.+|..+|+.+.++.....+ 
T Consensus       439 ~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~  517 (599)
T 1w6s_A          439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI  517 (599)
T ss_dssp             EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             ccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcE
Confidence                 1      347899999999887655532 112211112335677778999999999999999999988754432 


Q ss_pred             -ceeEEcCCCCe-eEEEe
Q 021319          278 -NSVEWNPKYNL-LAYAG  293 (314)
Q Consensus       278 -~~v~~~~~~~~-la~~~  293 (314)
                       .-+.+..+++. +++.+
T Consensus       518 ~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          518 GYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             SCCEEEEETTEEEEEEEE
T ss_pred             eccEEEEeCCEEEEEEEc
Confidence             23556667764 44433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.76  E-value=0.00015  Score=68.37  Aligned_cols=274  Identities=9%  Similarity=0.056  Sum_probs=167.6

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR------GHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      ...|+++...++|.+.+... + -|.+|+....   ........      -....|.++...+++  .|..|..++-|..
T Consensus       262 ~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~---~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~  334 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWIGTF-N-DLNIYHEGTD---SFASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNY  334 (795)
T ss_dssp             CSBEEEEEECTTSCEEEEES-S-CEEEEETTTT---EEEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEE
T ss_pred             CCeEEEEEEcCCCCEEEEeC-C-hhheEcCCCC---eEEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEE
Confidence            35699999998888665543 3 5778876532   11111100      123568999888764  3556777788999


Q ss_pred             EeCCCCceeeeEE------e-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee---------ccCcceeeEEe
Q 021319           94 WDARSGKCSQQAE------L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---------KFGYEVNEIAW  157 (314)
Q Consensus        94 wd~~~~~~~~~~~------~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~~~~~~  157 (314)
                      ++...+.......      + ...+.++...++|+ |.+|+.++.+..+|..+.+...-.         .....+.++..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~  413 (795)
T 4a2l_A          335 YHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV  413 (795)
T ss_dssp             ECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred             eCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence            9876554322111      1 22345666666665 666888888999998764332211         11234667777


Q ss_pred             ccCCCeEEEEcCCceEEEEeCCCCCceeeee-----ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-
Q 021319          158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-----AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-  231 (314)
Q Consensus       158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-  231 (314)
                      ..++..+.+++.++.+..++....+. ..+.     .....|.++..+++|++.+.. .+ .+..||..+.+....... 
T Consensus       414 d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~  490 (795)
T 4a2l_A          414 DEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEK  490 (795)
T ss_dssp             ETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCT
T ss_pred             cCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccc
Confidence            77777455566656688887654432 1221     123568999999988866544 34 488999877654322111 


Q ss_pred             -----cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe--------ccCccceeEEcCCCCeeEEEecCCcc
Q 021319          232 -----LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--------CRAAMNSVEWNPKYNLLAYAGDDKNK  298 (314)
Q Consensus       232 -----~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~--------~~~~i~~v~~~~~~~~la~~~~d~~~  298 (314)
                           ....|.++...++|.+.+... . -+..++..+++.  .+.        ....|+++...+++.+.+.+..  .+
T Consensus       491 ~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl  564 (795)
T 4a2l_A          491 DGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GF  564 (795)
T ss_dssp             TCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CE
T ss_pred             cccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--Cc
Confidence                 124688999999998777554 4 477888776554  222        1235888999888886654432  44


Q ss_pred             cc--cccceEEecc
Q 021319          299 YQ--ADEGVFRIYG  310 (314)
Q Consensus       299 ~~--~~~~~~~~~~  310 (314)
                      +.  .+.+.++.|.
T Consensus       565 ~~~d~~~~~~~~~~  578 (795)
T 4a2l_A          565 YCFNEKDKQIKRYN  578 (795)
T ss_dssp             EEEETTTTEEEEEC
T ss_pred             eeECCCCCcEEEeC
Confidence            44  4456666664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.74  E-value=4.7e-05  Score=63.11  Aligned_cols=222  Identities=10%  Similarity=0.064  Sum_probs=132.5

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC--cEEEEEccCCeEee
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD--ELTILDVRKFKPIH  144 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~  144 (314)
                      .....++|++++ +++++-..++.|..||... ..............+++.++++++++.....  .+..+|..+.+...
T Consensus        32 ~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDG-TIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCC-CEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            456789999864 5777766789999999865 3344444455667799999999766554433  36667766554322


Q ss_pred             eecc--CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC-cee---------eeeecccceEEEEECCCCCEEEEe-eC
Q 021319          145 RRKF--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLD---------TVVAHTAGCYCIAIDPMGRYFAVG-SA  211 (314)
Q Consensus       145 ~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~---------~~~~~~~~i~~i~~~~~~~~l~t~-~~  211 (314)
                      ....  ......++..+.+..+++-...+.++.++....+ .+.         .....-...+.+  +++++.|..+ ..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            1111  1122333333444444444467888888764321 010         000111234555  7788765544 45


Q ss_pred             CCeEEEeeCCC-cEE--EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEE--EEecc-CccceeEEc--
Q 021319          212 DSLVSLWDISE-MLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH--QIPCR-AAMNSVEWN--  283 (314)
Q Consensus       212 dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~--~~~~~-~~i~~v~~~--  283 (314)
                      .+.|..+|+.. +..  ...+... .....++++++|++.++....+.|.+++.. |+...  .+... ...++++|.  
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~  265 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQT  265 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCS
T ss_pred             CCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecc
Confidence            67899999864 221  1222111 234668999999988877778899999875 66532  22222 457899999  


Q ss_pred             -CCCCeeEEEec
Q 021319          284 -PKYNLLAYAGD  294 (314)
Q Consensus       284 -~~~~~la~~~~  294 (314)
                       |++..|..++.
T Consensus       266 ~~d~~~LyVt~~  277 (306)
T 2p4o_A          266 EGDCTAIYVVTN  277 (306)
T ss_dssp             TTTTTEEEEEEC
T ss_pred             cCCCCEEEEECC
Confidence             88766655544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.70  E-value=9.6e-05  Score=62.50  Aligned_cols=245  Identities=9%  Similarity=-0.037  Sum_probs=143.6

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      .+..+|.+..+++.++++-  ...|+..+++..   . ....+. ....+..++|++..+.+.++-...+.|..++...+
T Consensus        33 ~d~~~C~~~~~~~~ll~~~--~~~I~~i~~~g~---~-~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~  105 (349)
T 3v64_C           33 PDRRSCKALGPEPVLLFAN--RIDIRQVLPHRS---E-YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS  105 (349)
T ss_dssp             TTSSCEEESSSCCEEEEEC--BSCEEEECTTSC---C-EEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCcccccccCceeEeec--ccceEEEeCCCC---e-eEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence            3445566655644334433  244666665432   1 111222 23447889999876666667667889999998766


Q ss_pred             ceeeeEEe-cCceEEEEEccCCCEE-EEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEE-cCC-ceEE
Q 021319          100 KCSQQAEL-SGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLT-TGN-GTVE  174 (314)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-g~~~  174 (314)
                      ........ ......+++.+.+..| ++-...+.|.+.++......... ........++..|.+..++.+ ... +.|.
T Consensus       106 ~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~  185 (349)
T 3v64_C          106 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  185 (349)
T ss_dssp             SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence            53332221 1234567888755555 45555678888887643222111 122356788888865554444 444 7888


Q ss_pred             EEeCCCCCceeeeeecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecC
Q 021319          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE  253 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~  253 (314)
                      .++................++.++++|++..|..+ ...+.|..+|+........+...-.....+++ ..+....+-..
T Consensus       186 r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~  264 (349)
T 3v64_C          186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWH  264 (349)
T ss_dssp             EEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETT
T ss_pred             EEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCC
Confidence            88775433222222223457899999876665544 45578999998643222222222234567777 45666666667


Q ss_pred             CceEEEEECCCCCeEEEEe
Q 021319          254 DLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       254 d~~v~v~~~~~~~~~~~~~  272 (314)
                      .+.|...+..+|+....+.
T Consensus       265 ~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          265 TKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TTEEEEEETTTCCSCEEEE
T ss_pred             CCeEEEEEccCCCccEEec
Confidence            7889888877777666554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.69  E-value=2.9e-05  Score=62.20  Aligned_cols=199  Identities=11%  Similarity=0.169  Sum_probs=132.5

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec--CceEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVR  138 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~  138 (314)
                      .+.|-...+..++|+|+.+.+.+....++.|...|.. ++..+...+.  ...-.+++.+++.++++...++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4556667799999999866676778889999999997 8877776654  355678888888877776677888888865


Q ss_pred             CCeE---eeeecc-------CcceeeEEeccCCCeEEEEcCCceEEEEeCCC---CCceeeee-------ecccceEEEE
Q 021319          139 KFKP---IHRRKF-------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS---LRPLDTVV-------AHTAGCYCIA  198 (314)
Q Consensus       139 ~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~-------~~~~~i~~i~  198 (314)
                      ....   +.....       ......++|.+.++.++++.+.....+|.+..   ...+....       .+...+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            4332   222211       22347899999998887777665555555431   11111110       1223567899


Q ss_pred             ECCC-CCEEEEeeCCCeEEEeeCCCcEEEEEeeecc---------cCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319          199 IDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLE---------WPVRTISFSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       199 ~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      ++|. +++++.......+..+|.. ++.+..+.-..         .....|+|.|+|+..+ +|+-..++++..
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEEC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEEe
Confidence            9985 4566677777889999975 44544443221         1457899999998554 477777777654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.66  E-value=0.00012  Score=62.72  Aligned_cols=241  Identities=9%  Similarity=-0.042  Sum_probs=141.0

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceee
Q 021319           24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ  103 (314)
Q Consensus        24 ~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~  103 (314)
                      +|.+..+++ +|+-+. ...|+..+++...   .. ..+. ....+..++|++.++.++++-...+.|..++...+....
T Consensus        80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~---~~-~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSE---YT-LLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  152 (386)
T ss_dssp             CEEECSSCC-EEEEEC-BSCEEEECTTSCC---CE-EEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred             eECCccccc-eeEeec-CccceeeccCCCc---EE-EEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence            344444433 333333 3567777665321   11 1122 334578899998766677777778899999987665333


Q ss_pred             eEEe-cCceEEEEEccCCCEEE-EEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEc-CC-ceEEEEeC
Q 021319          104 QAEL-SGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT-GN-GTVEVLTY  178 (314)
Q Consensus       104 ~~~~-~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-g~~~~~~~  178 (314)
                      .... ......+++.+.+..|+ +-...+.|.+.++.......... .......++..|.+..++.+. .. +.|..++.
T Consensus       153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence            2221 12344577777555554 44556678888875432211111 123567888888666555544 44 67888777


Q ss_pred             CCCCceeeeeecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceE
Q 021319          179 PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI  257 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v  257 (314)
                      ...............++.++++|++..|..+ ...+.|..+|+........+.........+++ ..+.++.+....+.|
T Consensus       233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V  311 (386)
T 3v65_B          233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSI  311 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred             CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeE
Confidence            5443222222223457899999876655544 45678999998643222222222234567777 556666677778889


Q ss_pred             EEEECCCCCeEEEEe
Q 021319          258 DISNVHTGRTVHQIP  272 (314)
Q Consensus       258 ~v~~~~~~~~~~~~~  272 (314)
                      ...+..+|+.+..+.
T Consensus       312 ~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          312 NSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEETTTCCSCEEEE
T ss_pred             EEEECCCCcceEEEc
Confidence            999977777766654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=0.00027  Score=66.43  Aligned_cols=279  Identities=12%  Similarity=0.097  Sum_probs=167.7

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEe--------ecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL--------RGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ...|.++...++|.+-+ |..++-|..++.....   ......        .-....|.++...+++ . |..|..++-|
T Consensus       312 ~~~v~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt~~~Gl  385 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWI-GTWGGGINFISNAPPT---FHTWSYSPTQMNESSLSNKVVSSVCDDGQG-K-LWIGTDGGGI  385 (781)
T ss_dssp             SSCEEEEEECSSCCEEE-EEBSSCEEEECSSCCS---CEEEC----CCCSSCCSSSCEEEEEECTTS-C-EEEEEBSSCE
T ss_pred             CCeEEEEEEeCCCCEEE-EecCCeEEEeCCCCCc---ceeeccCccccccCCCCCcceEEEEEcCCC-C-EEEEeCCCcE
Confidence            45799999988887544 4555667777754321   111110        0123568888887653 3 4556666778


Q ss_pred             EEEeCCCCceeeeE---Ee-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec---cCcceeeEEeccCCCeE
Q 021319           92 RLWDARSGKCSQQA---EL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        92 ~iwd~~~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  164 (314)
                      ..+|..++......   .. ...+.++...+++. |.+|+.++.+..+|.++.+...-..   ....+.++...+++...
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw  464 (781)
T 3v9f_A          386 NVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW  464 (781)
T ss_dssp             EEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE
T ss_pred             EEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE
Confidence            89998755432211   11 13345566666665 5557777789999887654322211   12456667666666655


Q ss_pred             EEEcCCceEEEEeCCCCCceeeeeec-----ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee----cccC
Q 021319          165 FLTTGNGTVEVLTYPSLRPLDTVVAH-----TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK----LEWP  235 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~  235 (314)
                      +.. . +.+..++....+........     ...+.++..+++|++.+. +.++.+..||..+.+.. .+..    ....
T Consensus       465 igt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~  540 (781)
T 3v9f_A          465 IGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVR-KFNQYEGFCSNT  540 (781)
T ss_dssp             EEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEE-EECTTTTCSCSC
T ss_pred             EEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEE-EccCCCCCCCCe
Confidence            544 4 45777776543322111111     346899999999987664 44344777988765433 3321    1235


Q ss_pred             eEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-----cCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          236 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-----RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       236 v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-----~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      |.++...++|.+.++.. +|.+..+|..+++ +..+..     ...|.++...+++++.+++..--..|.++.+.++.|+
T Consensus       541 i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~~~~~~~~~  618 (781)
T 3v9f_A          541 INQIYRSSKGQMWLATG-EGLVCFPSARNFD-YQVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITSKKCFYTYD  618 (781)
T ss_dssp             EEEEEECTTSCEEEEET-TEEEEESCTTTCC-CEEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETTTTEEEEEC
T ss_pred             eEEEEECCCCCEEEEEC-CCceEEECCCCCc-EEEccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECCCCceEEec
Confidence            88999999998777554 7766888887665 333321     2358889888888877665444444556677888776


Q ss_pred             c
Q 021319          311 F  311 (314)
Q Consensus       311 ~  311 (314)
                      .
T Consensus       619 ~  619 (781)
T 3v9f_A          619 H  619 (781)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=5.2e-05  Score=66.06  Aligned_cols=153  Identities=18%  Similarity=0.218  Sum_probs=95.2

Q ss_pred             CEEEEEEcC-CCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC-C----cEEEEEccC-C
Q 021319           68 SVDQLCWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-D----ELTILDVRK-F  140 (314)
Q Consensus        68 ~v~~l~~~~-~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~----~i~i~d~~~-~  140 (314)
                      ....++++| .++. |..+...+.|+.+|+..+..............++++++++.|+++... +    .+.+++... .
T Consensus       138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            346788887 3444 444444488999999877655444444557789999999966666542 2    233344322 1


Q ss_pred             eEeeeeccCcceeeEEecc-CCCeEEEEcCCceEEEEeCCCCCceeeee-ecccceEEEEECCCCCEEE-EeeCCCeEEE
Q 021319          141 KPIHRRKFGYEVNEIAWNM-TGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFA-VGSADSLVSL  217 (314)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~-t~~~dg~i~v  217 (314)
                      ..............++++| ++.++++-...+.+..++........... ........++++|++++|. +-...+.|..
T Consensus       217 ~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          217 KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence            1111111223457788899 67777777788999999876543211111 1123578999999999554 4455678999


Q ss_pred             eeCC
Q 021319          218 WDIS  221 (314)
Q Consensus       218 wd~~  221 (314)
                      ++..
T Consensus       297 ~~~d  300 (430)
T 3tc9_A          297 SDYD  300 (430)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            8765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.55  E-value=0.00037  Score=63.12  Aligned_cols=220  Identities=12%  Similarity=0.047  Sum_probs=132.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEecCc-----eE-E-EEEc--cCCC-EEEEEeC------CCcEEEEEccCCeEe
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAELSGE-----NI-N-ITYK--PDGT-HIAVGNR------DDELTILDVRKFKPI  143 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-----~~-~-~~~~--~~~~-~l~~~~~------d~~i~i~d~~~~~~~  143 (314)
                      ..++.++.|+.|.-+|..+|+..-.......     .. . +...  .+++ .++++..      ++.+..+|.++.+.+
T Consensus       118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~  197 (582)
T 1flg_A          118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI  197 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence            4677888999999999999987655543321     10 0 1111  1233 5666543      788999999888776


Q ss_pred             eeeccCcc------------------------------------------eeeEEeccCCCeEEEEcC------------
Q 021319          144 HRRKFGYE------------------------------------------VNEIAWNMTGEMFFLTTG------------  169 (314)
Q Consensus       144 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~------------  169 (314)
                      ........                                          -...++.+....++++..            
T Consensus       198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~  277 (582)
T 1flg_A          198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTA  277 (582)
T ss_dssp             EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSC
T ss_pred             eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccccc
Confidence            54322100                                          011334455556665553            


Q ss_pred             --------C----ceEEEEeCCCCCceeeeee--cc-------cceEEEEEC-CCCC---EEEEeeCCCeEEEeeCCCcE
Q 021319          170 --------N----GTVEVLTYPSLRPLDTVVA--HT-------AGCYCIAID-PMGR---YFAVGSADSLVSLWDISEML  224 (314)
Q Consensus       170 --------~----g~~~~~~~~~~~~~~~~~~--~~-------~~i~~i~~~-~~~~---~l~t~~~dg~i~vwd~~~~~  224 (314)
                              +    +.+..++..+.+.+-.++.  |.       ....-+... .+|+   .++.++.+|.+.++|..+++
T Consensus       278 ~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  357 (582)
T 1flg_A          278 KGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             TTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             CCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence                    1    5788888887776655432  21       111222322 4664   78889999999999999988


Q ss_pred             EEEEeeecc-------------cC--------------------------------eEEEEEccCCcEEEEec-------
Q 021319          225 CVRTFTKLE-------------WP--------------------------------VRTISFSHTGDYIASAS-------  252 (314)
Q Consensus       225 ~~~~~~~~~-------------~~--------------------------------v~~~~~sp~~~~l~s~s-------  252 (314)
                      .+-.+....             .+                                ...++++|+..+++...       
T Consensus       358 ~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~  437 (582)
T 1flg_A          358 LQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDY  437 (582)
T ss_dssp             EEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEE
T ss_pred             EecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceee
Confidence            775543221             00                                01346677655554432       


Q ss_pred             --------------------------CCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCccc
Q 021319          253 --------------------------EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY  299 (314)
Q Consensus       253 --------------------------~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~  299 (314)
                                                .++.+..||..+|+.+.+.+...++..-.....+.++++++.|+.++
T Consensus       438 ~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~  510 (582)
T 1flg_A          438 WTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFK  510 (582)
T ss_dssp             EECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEE
T ss_pred             ecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEE
Confidence                                      36889999999999998887655544333333466677777665443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.49  E-value=0.00025  Score=61.78  Aligned_cols=197  Identities=11%  Similarity=0.116  Sum_probs=117.0

Q ss_pred             CEEEEEEcCC--CCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-----cEEEEEccCC
Q 021319           68 SVDQLCWDPK--HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-----ELTILDVRKF  140 (314)
Q Consensus        68 ~v~~l~~~~~--~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~  140 (314)
                      ....++|+|+  ++.+.+ +...+.|+.+|..++..............++++++++ |+++...+     .+..++....
T Consensus       140 ~P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEE-EeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            4568899984  344444 4333899999998777655444344577899999999 55544321     2333332211


Q ss_pred             -eEeeeeccCcceeeEEecc-CCCeEEEEcCCceEEEEeCCCCCceeeeee--cccceEEEEECCCCCEEEEe-eCCCeE
Q 021319          141 -KPIHRRKFGYEVNEIAWNM-TGEMFFLTTGNGTVEVLTYPSLRPLDTVVA--HTAGCYCIAIDPMGRYFAVG-SADSLV  215 (314)
Q Consensus       141 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~t~-~~dg~i  215 (314)
                       ..............+++++ .+.++++-..++.++.++.........+..  .......++++|+++.|..+ ...+.|
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence             1001111123456678888 677777777788888888764433122211  12234579999999955544 456789


Q ss_pred             EEeeCC--CcEE--EEEeeec---------------ccCeEEEEE---------ccCCcEEEEecCCceEEEEECCCCCe
Q 021319          216 SLWDIS--EMLC--VRTFTKL---------------EWPVRTISF---------SHTGDYIASASEDLFIDISNVHTGRT  267 (314)
Q Consensus       216 ~vwd~~--~~~~--~~~~~~~---------------~~~v~~~~~---------sp~~~~l~s~s~d~~v~v~~~~~~~~  267 (314)
                      +.++..  ++..  ...+.+.               -.....+++         .++|.+.++-.....|+.++. +|..
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v  376 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV  376 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence            998764  2211  1112111               012566888         777888887778888998884 5543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.48  E-value=0.0004  Score=60.45  Aligned_cols=233  Identities=9%  Similarity=0.075  Sum_probs=133.2

Q ss_pred             cEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC----cEEEEeC
Q 021319           22 KVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK----TVRLWDA   96 (314)
Q Consensus        22 ~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~----~v~iwd~   96 (314)
                      ....|+++| ++..|..+...+.|+.++.+..   .+.  .+.........+++++++..++++...++    .+...+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---~v~--~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---YVS--TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---EEE--EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---EEE--EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence            457889998 4555665555477888887542   122  22234456788999987643555544322    2333343


Q ss_pred             CCCcee--eeEEecCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEe--eeeccCcceeeEEeccCCC-eEEEEcCC
Q 021319           97 RSGKCS--QQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPI--HRRKFGYEVNEIAWNMTGE-MFFLTTGN  170 (314)
Q Consensus        97 ~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~  170 (314)
                       .+...  ...........+++.| ++.++++-...+.|..+++......  ...........++++|+++ .+++-...
T Consensus       213 -~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          213 -ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             -GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             -CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence             33222  2222233445678899 6666666667788999998765432  1121223467899999999 55555677


Q ss_pred             ceEEEEeCCCC-Cc---eeeeeec---------------ccceE-EEEEC--------CCCCEEEEeeCCCeEEEeeCCC
Q 021319          171 GTVEVLTYPSL-RP---LDTVVAH---------------TAGCY-CIAID--------PMGRYFAVGSADSLVSLWDISE  222 (314)
Q Consensus       171 g~~~~~~~~~~-~~---~~~~~~~---------------~~~i~-~i~~~--------~~~~~l~t~~~dg~i~vwd~~~  222 (314)
                      +.+..++.... ..   ...+.+.               -..+. .+++.        +++.+.++-..++.|+.++. +
T Consensus       292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~  370 (430)
T 3tc9_A          292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-Q  370 (430)
T ss_dssp             TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-T
T ss_pred             CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-C
Confidence            88888876432 11   1111111               11233 45553        44666666566778999984 4


Q ss_pred             cEEEEEeeec---------c---------cCeEEEEEccC-CcEEEEecCCceEEEEEC
Q 021319          223 MLCVRTFTKL---------E---------WPVRTISFSHT-GDYIASASEDLFIDISNV  262 (314)
Q Consensus       223 ~~~~~~~~~~---------~---------~~v~~~~~sp~-~~~l~s~s~d~~v~v~~~  262 (314)
                      +... ++.+.         +         .....|+++|+ +.++++-.....|+..+.
T Consensus       371 G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          371 GRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             SEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            5433 22221         1         13677888884 666665556667776654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.46  E-value=0.00019  Score=57.54  Aligned_cols=184  Identities=8%  Similarity=0.114  Sum_probs=118.2

Q ss_pred             CceEEEEEccCCCEEE-EEeCCCcEEEEEccCCeEeeeeccC--cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCce-
Q 021319          109 GENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPL-  184 (314)
Q Consensus       109 ~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-  184 (314)
                      .+...+++.|+++.|+ +...++.|..+|+. .+.+.+....  .....+++..++.++++.-.++.+.++.......+ 
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            4567799999876555 57778889999987 6666665443  46778888888876666667788888876543321 


Q ss_pred             --eeee------ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC------cEEEEE--ee--ecccCeEEEEEccCC-
Q 021319          185 --DTVV------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRT--FT--KLEWPVRTISFSHTG-  245 (314)
Q Consensus       185 --~~~~------~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~------~~~~~~--~~--~~~~~v~~~~~sp~~-  245 (314)
                        ....      ..+.....++++|.++.|.++.......+|.+..      ...+..  +.  .....+..++++|.. 
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg  185 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN  185 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred             eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence              1111      1234468999999987666665554455555431      122111  00  122357899999975 


Q ss_pred             cEEEEecCCceEEEEECCCCCeEEEEeccC----------ccceeEEcCCCCeeEEEecC
Q 021319          246 DYIASASEDLFIDISNVHTGRTVHQIPCRA----------AMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       246 ~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~----------~i~~v~~~~~~~~la~~~~d  295 (314)
                      .+++.......+.+.|. +|+.+..+....          --..|+|.|+|++.++ ++-
T Consensus       186 ~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~  243 (255)
T 3qqz_A          186 TLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEP  243 (255)
T ss_dssp             EEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETT
T ss_pred             eEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCC
Confidence            55556666778888885 467776665432          2358999999986654 544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.41  E-value=0.00074  Score=58.18  Aligned_cols=232  Identities=9%  Similarity=-0.038  Sum_probs=137.1

Q ss_pred             EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc----eeeeEE-ec
Q 021319           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAE-LS  108 (314)
Q Consensus        34 ~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~----~~~~~~-~~  108 (314)
                      +|+.+. ...|+..+++....  .   .+......+..++|++.++.+.++-...+.|+.+++....    ...... ..
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~--~---~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEY--T---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSC--E---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eeEEec-cceeEEEccCCcce--e---EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            343333 36777777764321  1   1223455678999998766666666677899999886521    111111 12


Q ss_pred             CceEEEEEccCCC-EEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEc-C-CceEEEEeCCCCCce
Q 021319          109 GENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT-G-NGTVEVLTYPSLRPL  184 (314)
Q Consensus       109 ~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~~~~~~~~~~  184 (314)
                      .....+++.+.+. +.++-...+.|.+.++.......... .......++..|.+..++.+. . .+.|...++......
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            3456688887444 44455567788888886543322222 223467888888666555554 3 367888877654332


Q ss_pred             eeeeecccceEEEEECCCCCEEEEee-CCCeEEEeeCCCcEEEEEeee--cccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319          185 DTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       185 ~~~~~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~  261 (314)
                      ......-..++.|++++++..|..+. ..+.|..+|+...........  .-.....++. ..+.++.+....+.|...+
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEE
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEE
Confidence            22222235688999998777666554 457899999864432222221  1123456666 3455666666778899999


Q ss_pred             CCCCCeEEEEe
Q 021319          262 VHTGRTVHQIP  272 (314)
Q Consensus       262 ~~~~~~~~~~~  272 (314)
                      ..+|+.+..+.
T Consensus       318 ~~~G~~~~~i~  328 (400)
T 3p5b_L          318 RLTGSDVNLLA  328 (400)
T ss_dssp             SSSCCCCEEEE
T ss_pred             cCCCCceEEEe
Confidence            88887665553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.39  E-value=9.6e-05  Score=69.18  Aligned_cols=193  Identities=10%  Similarity=0.037  Sum_probs=106.1

Q ss_pred             CEEEEEEc-CCCCCEEEEEeCCC----cEEEEeCCCC-ceeeeEEecCceEEEEEccCCCEEEEEeCCC-----cEEEEE
Q 021319           68 SVDQLCWD-PKHADLIATASGDK----TVRLWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDD-----ELTILD  136 (314)
Q Consensus        68 ~v~~l~~~-~~~~~~l~s~~~D~----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~d  136 (314)
                      .+...+|+ |++..++.+.+.+|    +|+++|+.++ +.... .+......+.|+||++.|+....+.     .|..++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            57788999 98654444444433    5999999988 53211 1111123578999998888776542     466677


Q ss_pred             ccCCe----EeeeeccCcceeeEEeccCCCeEEEEc---CCceEEEEeCCCCC-ce--eee-eecccceEEEEECCCCCE
Q 021319          137 VRKFK----PIHRRKFGYEVNEIAWNMTGEMFFLTT---GNGTVEVLTYPSLR-PL--DTV-VAHTAGCYCIAIDPMGRY  205 (314)
Q Consensus       137 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~-~~--~~~-~~~~~~i~~i~~~~~~~~  205 (314)
                      +.+.+    .+...........+.|+++++.++...   ....+.++++.... ..  ..+ .......+.+.|+..+.+
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l  333 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL  333 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence            76542    221111122245678999999887765   34567777775532 12  222 223344566665544445


Q ss_pred             EEEeeCC----CeEEEeeCCCcEEEEE-eeeccc--CeEEEEEccCCcEEEEecCCce--EEEEEC
Q 021319          206 FAVGSAD----SLVSLWDISEMLCVRT-FTKLEW--PVRTISFSHTGDYIASASEDLF--IDISNV  262 (314)
Q Consensus       206 l~t~~~d----g~i~vwd~~~~~~~~~-~~~~~~--~v~~~~~sp~~~~l~s~s~d~~--v~v~~~  262 (314)
                      ++....+    ..|..+|+.+....+. +..+..  .+..+++. .+.++++...|+.  +.+++.
T Consensus       334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            5555444    2566677654211122 222333  33444443 3445566777775  455564

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.36  E-value=0.00073  Score=56.26  Aligned_cols=228  Identities=7%  Similarity=-0.046  Sum_probs=133.4

Q ss_pred             CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeee-EE-ecCceEEEEEcc
Q 021319           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-AE-LSGENINITYKP  118 (314)
Q Consensus        41 D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~-~~-~~~~~~~~~~~~  118 (314)
                      ...|+..+++......  ...+.+ .....++.|++.++.+..+-...+.|..++...+..... .. .-.....+++.+
T Consensus        12 ~~~I~~i~l~~~~~~~--~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           12 RRDLRLVDATNGKENA--TIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEETTCTTSCC--EEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred             cCeEEEEECCCCceEE--EEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence            3568888876532111  111222 234568899987666777777788999999876532111 11 112345677776


Q ss_pred             CCCEE-EEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEc--CCceEEEEeCCCCCceeeeeecccce
Q 021319          119 DGTHI-AVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTT--GNGTVEVLTYPSLRPLDTVVAHTAGC  194 (314)
Q Consensus       119 ~~~~l-~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~i  194 (314)
                      .+..| ++-...+.|.++++......... ........++..|.+..++.+.  ..+.|..++.............-..+
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P  168 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP  168 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence            55444 45556678999987643221111 2223467888888655555554  35788888765433222122223457


Q ss_pred             EEEEECCCCCEEEEe-eCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319          195 YCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       195 ~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      +.+++++++..|..+ ...+.|..+|+............-.....+++. .+.++.+-...+.|...+..+|+....+.
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            899999976665554 456789999986432211222122345667775 34555566677889999988877655543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.28  E-value=0.0011  Score=56.76  Aligned_cols=205  Identities=8%  Similarity=-0.004  Sum_probs=122.7

Q ss_pred             ccEEEEEECCCCCEEE-EeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~-s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      .....++|++.+..|. +-...+.|..++++...   ... .+.........+++++.++.+.++-...+.|.+.++...
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~-~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEE-VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---EEE-EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC---cEE-EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence            3567889997655544 44466788888775321   111 122222345677888766667777777888999888654


Q ss_pred             ceeeeEEe-cCceEEEEEccCCCEEEEEeCC--CcEEEEEccCCeEeeeecc-CcceeeEEeccCCCe-EEEEcCCceEE
Q 021319          100 KCSQQAEL-SGENINITYKPDGTHIAVGNRD--DELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEM-FFLTTGNGTVE  174 (314)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~  174 (314)
                      ........ -..+..+++.|.+..|+.....  +.|..+++........... ......+++++.+.. +++-...+.|.
T Consensus       192 ~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~  271 (386)
T 3v65_B          192 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  271 (386)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence            33222221 1346678899877777665543  5677777754322211111 234678999976554 45555678899


Q ss_pred             EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~  230 (314)
                      .+++........+......+..+++. .+.++.+-...+.|..+|..+++.+..+.
T Consensus       272 ~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          272 RANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            98876543322222233457788883 45555666667889888866665444443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.27  E-value=0.00012  Score=67.35  Aligned_cols=242  Identities=12%  Similarity=0.054  Sum_probs=131.1

Q ss_pred             EEEEcCCCCCEEEEEeCCC-----------cEEEEeCCCCceeeeEEecC----ceEEEEEccCCCEEEEEeC-CCcEEE
Q 021319           71 QLCWDPKHADLIATASGDK-----------TVRLWDARSGKCSQQAELSG----ENINITYKPDGTHIAVGNR-DDELTI  134 (314)
Q Consensus        71 ~l~~~~~~~~~l~s~~~D~-----------~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-d~~i~i  134 (314)
                      .+++.+.++.+++.|+.+.           .+.+||..+++.........    ....+++..+++.+++|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            4455553456777877543           57899998887544332211    1123567789999999884 457999


Q ss_pred             EEccCCeEeeeec--cCcceeeEEeccCCCeEEEEc-CC-----ceEEEEeCCCCCceee--e--eecccceEEEEECCC
Q 021319          135 LDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTT-GN-----GTVEVLTYPSLRPLDT--V--VAHTAGCYCIAIDPM  202 (314)
Q Consensus       135 ~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~-----g~~~~~~~~~~~~~~~--~--~~~~~~i~~i~~~~~  202 (314)
                      ||+.+.+......  ....-..++..+++..+++++ .+     ..+.+|+....+-...  .  ......-....+..+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~  349 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  349 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence            9998765443221  111222344556888888887 33     4677787654321110  0  000000000112234


Q ss_pred             CCEEEEeeCCC---------eEEEeeCCCcEEEEEeeecc---------cCeEEEEEc-cCCcEEEEecCCc--------
Q 021319          203 GRYFAVGSADS---------LVSLWDISEMLCVRTFTKLE---------WPVRTISFS-HTGDYIASASEDL--------  255 (314)
Q Consensus       203 ~~~l~t~~~dg---------~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s-p~~~~l~s~s~d~--------  255 (314)
                      +..++.|+.+|         .+..||..+...........         ..-.++.|. .++++++.|+.+.        
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~  429 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  429 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence            45545554443         46788887654333222111         123445554 4788899988542        


Q ss_pred             ---eEEEEECCCCCeEEEE----eccCccceeEEcCCCCeeEEEecCCcc-cc--cccceEEecccc
Q 021319          256 ---FIDISNVHTGRTVHQI----PCRAAMNSVEWNPKYNLLAYAGDDKNK-YQ--ADEGVFRIYGFE  312 (314)
Q Consensus       256 ---~v~v~~~~~~~~~~~~----~~~~~i~~v~~~~~~~~la~~~~d~~~-~~--~~~~~~~~~~~~  312 (314)
                         .+.+||..+..-....    +..-.-.+....|++++++.||.+... |.  --..++.+|+.+
T Consensus       430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~  496 (656)
T 1k3i_A          430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE  496 (656)
T ss_dssp             CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred             cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence               5778887765433221    111112345667899999999966321 10  012456677654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=0.0031  Score=59.27  Aligned_cols=275  Identities=9%  Similarity=0.055  Sum_probs=159.2

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR------GHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      ..|.++...++|.+.+... + -|.+|+.....   .......      -....|.++...+++  .|..|...+-|.++
T Consensus       211 ~~i~~i~~d~~g~lwigt~-~-Gl~~~d~~~~~---~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~~Gl~~~  283 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGTS-K-GLALFNANTET---FTNFHNNPGNIHGALSSYIFSIKQLKDN--KLWIATELNGIMIL  283 (781)
T ss_dssp             SSEEEEEECTTCCEEEEET-T-EEEEEETTTTE---EEC-----------CCCCEEEEEECTTS--EEEEEESSSCEEEE
T ss_pred             CceeEEEEcCCCCEEEEeC-C-cHheECCCCCc---EEEEEcCCCccccccCceEEEEEECCCC--CEEEEeCCCCeEEE
Confidence            4688998888888766543 3 57788865321   1111110      123568888877653  45556665678899


Q ss_pred             eCCCCceeeeEE--------------e-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE--eee--------eccC
Q 021319           95 DARSGKCSQQAE--------------L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHR--------RKFG  149 (314)
Q Consensus        95 d~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~--------~~~~  149 (314)
                      |..++.......              + ...+.++...++|. |.+|+.++.|..++......  ...        ....
T Consensus       284 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~  362 (781)
T 3v9f_A          284 DLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSN  362 (781)
T ss_dssp             ETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSS
T ss_pred             CCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCC
Confidence            987765432211              1 12345666677665 66788788899998764322  110        0112


Q ss_pred             cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee---eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE
Q 021319          150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV---VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (314)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~  226 (314)
                      ..+.++....++...+ ++.++-+..++....+.....   ......|.++..++++++.+ |+.++.+..+|..+++..
T Consensus       363 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWI-GTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             SCEEEEEECTTSCEEE-EEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred             cceEEEEEcCCCCEEE-EeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence            3466776666666554 444445666665432111000   11235689999998887655 666667999998766543


Q ss_pred             EEeee---cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec------cCccceeEEcCCCCeeEEEecCCc
Q 021319          227 RTFTK---LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC------RAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       227 ~~~~~---~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~------~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                       .+..   ....|.++...+++.+.+.. .. -+..++..+++.......      ...|+++...+++.+.+ |..++.
T Consensus       441 -~~~~~~~~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~G  516 (781)
T 3v9f_A          441 -IIELEKNELLDVRVFYEDKNKKIWIGT-HA-GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGG  516 (781)
T ss_dssp             -ECCSTTTCCCCEEEEEECTTSEEEEEE-TT-EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSC
T ss_pred             -EeccCCCCCCeEEEEEECCCCCEEEEE-CC-ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCC
Confidence             3321   23568899988888876644 34 588888877654332211      24688888888887654 443344


Q ss_pred             cccc--ccceEEec
Q 021319          298 KYQA--DEGVFRIY  309 (314)
Q Consensus       298 ~~~~--~~~~~~~~  309 (314)
                      ++..  +.+.++.|
T Consensus       517 l~~~~~~~~~~~~~  530 (781)
T 3v9f_A          517 VGIYTPDMQLVRKF  530 (781)
T ss_dssp             EEEECTTCCEEEEE
T ss_pred             EEEEeCCCCeEEEc
Confidence            5443  34555554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.25  E-value=0.0014  Score=54.79  Aligned_cols=265  Identities=9%  Similarity=0.044  Sum_probs=140.1

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeE-EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      ...+.+|.|.+++..++ ++.++.|  |........+.... ........+.++.+.+  +..++ ++.++.|.. ..+.
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~-~g~~g~i~~-S~Dg  107 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWI-VGEPPIMLH-TTDG  107 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEE-EEETTEEEE-ESST
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEE-EECCCeEEE-ECCC
Confidence            34799999988777777 4556754  33333222222211 1111244678888876  23444 455665543 3333


Q ss_pred             CceeeeEE----ecCceEEEEEccCCCEEEEEeCCCcEE-EEE-ccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCce
Q 021319           99 GKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELT-ILD-VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT  172 (314)
Q Consensus        99 ~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~-i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  172 (314)
                      |+--....    +......+.+.+++..++++ .++.+. -.| -++.+.+.. .....+..+.+.+++..++++.. |.
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~-~~~~~~~~~~~~~~~~~~~~g~~-G~  184 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQ-EAIGVMRNLNRSPSGEYVAVSSR-GS  184 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEEC-SCCCCEEEEEECTTSCEEEEETT-SS
T ss_pred             CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeec-CCCcceEEEEEcCCCcEEEEECC-Cc
Confidence            43222111    12334556666666666555 445443 223 223333322 12234667888888777766544 44


Q ss_pred             EEEE-eC--CCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee----cccCeEEEEEccCC
Q 021319          173 VEVL-TY--PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK----LEWPVRTISFSHTG  245 (314)
Q Consensus       173 ~~~~-~~--~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~sp~~  245 (314)
                      +..- +.  ...+++.  ......+..++++++++.++. +.+|.+.+.+...++.-..+..    ....+.++++.|++
T Consensus       185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~  261 (327)
T 2xbg_A          185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN  261 (327)
T ss_dssp             EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred             EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence            4332 22  1112221  123456788999999887654 4578777764333433222221    12347889999988


Q ss_pred             cEEEEecCCceEEEEECCCCCeEEEEec----cCccceeEEcCCCCeeEEEecCCcccc
Q 021319          246 DYIASASEDLFIDISNVHTGRTVHQIPC----RAAMNSVEWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       246 ~~l~s~s~d~~v~v~~~~~~~~~~~~~~----~~~i~~v~~~~~~~~la~~~~d~~~~~  300 (314)
                      .+++.+. ++.+. +....|+.-..+..    ...+++|.|.+++. ++.+|.++.++.
T Consensus       262 ~~~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~  317 (327)
T 2xbg_A          262 EVWLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLR  317 (327)
T ss_dssp             CEEEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEE
T ss_pred             EEEEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEE
Confidence            8777665 56553 33444544333321    24678999976555 445666765443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.24  E-value=0.0008  Score=55.62  Aligned_cols=204  Identities=10%  Similarity=0.136  Sum_probs=127.6

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC---------ceEEEEE---ccCCCEEEEEe-
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---------ENINITY---KPDGTHIAVGN-  127 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~l~~~~-  127 (314)
                      .+........+..|++..+.+.++.-..++|..||...+..... ....         ....+.+   .|+++++++.. 
T Consensus         7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A            7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            34444445567899887655555555799999999976644333 2221         2356888   68877777644 


Q ss_pred             ------------CCCcEEEEEcc---CCeEeeeeccC--------------cceeeEEeccCCCeEEEEcCC-ceEEEEe
Q 021319          128 ------------RDDELTILDVR---KFKPIHRRKFG--------------YEVNEIAWNMTGEMFFLTTGN-GTVEVLT  177 (314)
Q Consensus       128 ------------~d~~i~i~d~~---~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-g~~~~~~  177 (314)
                                  .+..+..+|+.   +.+.+......              .....++..++|+.+++.+.. +.|..++
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS  165 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence                        25679999998   66665443321              236788999999999988877 7777666


Q ss_pred             CCCCCceeeeee------cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE--EEEee--ec--c-cCeEEE-EEcc
Q 021319          178 YPSLRPLDTVVA------HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFT--KL--E-WPVRTI-SFSH  243 (314)
Q Consensus       178 ~~~~~~~~~~~~------~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~--~~--~-~~v~~~-~~sp  243 (314)
                      .... .+..+..      .....+.|+++|+|+.|++....|.+..+|+.+...  +. ..  +.  . .....+ .--.
T Consensus       166 pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~  243 (334)
T 2p9w_A          166 ADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPV  243 (334)
T ss_dssp             TTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEE
T ss_pred             CCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCccccccccc
Confidence            5433 2222211      122367999999999888887799999999875432  21 11  11  0 112332 3334


Q ss_pred             CCcE-EEEecCCceEEEEECCCCCe
Q 021319          244 TGDY-IASASEDLFIDISNVHTGRT  267 (314)
Q Consensus       244 ~~~~-l~s~s~d~~v~v~~~~~~~~  267 (314)
                      +|+. |++.+..+.+.+.+....+.
T Consensus       244 ~G~vllV~~~~~~~~~l~S~DgW~s  268 (334)
T 2p9w_A          244 GNESVLVGARAPYAISFRSWDNWKS  268 (334)
T ss_dssp             TTEEEEEEEETTEEEEEECSSTTSE
T ss_pred             CCEEEEEEcCCCCEEEEECCCCcce
Confidence            6776 56666676666665544333

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.16  E-value=0.0021  Score=53.38  Aligned_cols=175  Identities=9%  Similarity=0.003  Sum_probs=108.2

Q ss_pred             CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEE-eCCCcEEEEEccC----CeEeeeecc-CcceeeEEeccC-C
Q 021319           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRK----FKPIHRRKF-GYEVNEIAWNMT-G  161 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~----~~~~~~~~~-~~~~~~~~~~~~-~  161 (314)
                      ..|+..|+.................++|.+++..|+.. ...+.|..+++..    ......... ......+++.+. +
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            56888898877655544445567789999876666554 4567899998865    111111111 134567788754 4


Q ss_pred             CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC-C-CeEEEeeCCCcEEEEEe-eecccCeEE
Q 021319          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-D-SLVSLWDISEMLCVRTF-TKLEWPVRT  238 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-d-g~i~vwd~~~~~~~~~~-~~~~~~v~~  238 (314)
                      ..+++-...+.|.+++................+..++++|.+..|+.+.. . +.|...++.... .+.+ ...-.....
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~g  168 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNG  168 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEE
T ss_pred             eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceE
Confidence            55566677889999887654322222223356889999986665544443 3 688888875432 2222 111234678


Q ss_pred             EEEccCCcEEEEe-cCCceEEEEECCC
Q 021319          239 ISFSHTGDYIASA-SEDLFIDISNVHT  264 (314)
Q Consensus       239 ~~~sp~~~~l~s~-s~d~~v~v~~~~~  264 (314)
                      ++++|++..|..+ +..+.|..++...
T Consensus       169 la~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          169 ITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEeccCCEEEEEECCCCeEEEEecCC
Confidence            9999987665544 5667899999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.16  E-value=0.0024  Score=53.90  Aligned_cols=203  Identities=8%  Similarity=-0.004  Sum_probs=121.3

Q ss_pred             cEEEEEECCCCCEEE-EeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319           22 KVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~-s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~  100 (314)
                      ....++|++....|. +-...+.|..++++...   ... .+.........+++++.++.+.++-...+.|.+.+.....
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~-~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~  149 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEE-VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH  149 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEE-EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCC---ceE-EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc
Confidence            467889987665554 44466778888775422   111 1222223456788887666677777778899999987543


Q ss_pred             eeeeEEe-cCceEEEEEccCCCEEEEEeC-C-CcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeE-EEEcCCceEEE
Q 021319          101 CSQQAEL-SGENINITYKPDGTHIAVGNR-D-DELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMF-FLTTGNGTVEV  175 (314)
Q Consensus       101 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~g~~~~  175 (314)
                      ....... -..+..+++.|.+..|+.... . +.|..+++.......... .......+++++.+..+ ++-...+.|..
T Consensus       150 ~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~  229 (349)
T 3v64_C          150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  229 (349)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence            3222211 234667889987666665544 3 668888775432211111 12346789999765554 44456788998


Q ss_pred             EeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                      +++........+......+..+++. .+...++-...+.|..+|..+++.+..+
T Consensus       230 ~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          230 ANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            8876543222222233456788883 4555556666778888886555544444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.13  E-value=0.0035  Score=54.55  Aligned_cols=234  Identities=9%  Similarity=0.056  Sum_probs=132.1

Q ss_pred             ccEEEEEECCC--CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC---Cc-EEEE
Q 021319           21 KKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KT-VRLW   94 (314)
Q Consensus        21 ~~V~~v~~s~~--g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D---~~-v~iw   94 (314)
                      .....|+|+|+  ...|..+...+.|+.++.+..   .+.  .+.........+++++++. ++++-...   .. +...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---~v~--~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---YVD--IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---EEE--EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC---EEE--EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence            34678999985  344444444488888887532   222  2333445688999999865 65554321   12 2223


Q ss_pred             eCCCCce-eeeEEecCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeee---eccCcceeeEEeccCCC-eEEEEc
Q 021319           95 DARSGKC-SQQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHR---RKFGYEVNEIAWNMTGE-MFFLTT  168 (314)
Q Consensus        95 d~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~  168 (314)
                      +...+.. ............+++.| ++.+.++-..++.|..+|.........   .........++++++++ ++++-.
T Consensus       213 ~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          213 TRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             CGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred             ECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence            3221111 01111123344577888 666555555677899999875443111   11111234589999998 555556


Q ss_pred             CCceEEEEeCCCCC-c---eeeeeec---------------ccceEEEEE---------CCCCCEEEEeeCCCeEEEeeC
Q 021319          169 GNGTVEVLTYPSLR-P---LDTVVAH---------------TAGCYCIAI---------DPMGRYFAVGSADSLVSLWDI  220 (314)
Q Consensus       169 ~~g~~~~~~~~~~~-~---~~~~~~~---------------~~~i~~i~~---------~~~~~~l~t~~~dg~i~vwd~  220 (314)
                      ..+.|..+++.... .   ...+.+.               -..+..+++         ++++.+.++-..++.|+.++.
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            77889888764211 1   1122111               123677999         778877777777789999985


Q ss_pred             CCcEEEEEeeecc------------------cCeEEEEEc-cCCcEEEEecCCceEEEEEC
Q 021319          221 SEMLCVRTFTKLE------------------WPVRTISFS-HTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       221 ~~~~~~~~~~~~~------------------~~v~~~~~s-p~~~~l~s~s~d~~v~v~~~  262 (314)
                       ++.. .++.+..                  .....|+++ +++.++++=.....|+..+.
T Consensus       373 -~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          373 -EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             -TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             -CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence             4543 3332210                  125668888 55666655556666666654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.12  E-value=0.0004  Score=65.01  Aligned_cols=183  Identities=13%  Similarity=0.081  Sum_probs=101.7

Q ss_pred             eEEEEEc-cCCCEEEEEeC-CC----cEEEEEccCC-eEeeeeccCcceeeEEeccCCCeEEEEcCC-----ceEEEEeC
Q 021319          111 NINITYK-PDGTHIAVGNR-DD----ELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-----GTVEVLTY  178 (314)
Q Consensus       111 ~~~~~~~-~~~~~l~~~~~-d~----~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~  178 (314)
                      .....|+ |||++|+.+.. +|    .|.++|+.+. +.+.. ........+.|+|+++.++....+     ..+..+++
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            3467899 99998885543 33    3999999876 53211 111123568899999877766543     25666666


Q ss_pred             CCCCce--eeee-ecccceEEEEECCCCCEEEEeeC---CCeEEEeeCCCc--EE-EEEe-eecccCeEEEEEccCCcEE
Q 021319          179 PSLRPL--DTVV-AHTAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEM--LC-VRTF-TKLEWPVRTISFSHTGDYI  248 (314)
Q Consensus       179 ~~~~~~--~~~~-~~~~~i~~i~~~~~~~~l~t~~~---dg~i~vwd~~~~--~~-~~~~-~~~~~~v~~~~~sp~~~~l  248 (314)
                      .+....  ..+. ........+.|+|||++|+..+.   ...|.++|+.++  .. +..+ ........++.|+.++.++
T Consensus       255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~  334 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLV  334 (751)
T ss_dssp             TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEE
T ss_pred             CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEE
Confidence            554322  1121 12233567889999998876553   336888888764  22 1223 2233444555555445555


Q ss_pred             EEecCC----ceEEEEECCCC-CeEE-EEeccC--ccceeEEcCCCCeeEEEecC
Q 021319          249 ASASED----LFIDISNVHTG-RTVH-QIPCRA--AMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       249 ~s~s~d----~~v~v~~~~~~-~~~~-~~~~~~--~i~~v~~~~~~~~la~~~~d  295 (314)
                      +....+    ..|..++..++ .... .+.+..  .+..+++.. +.++++...|
T Consensus       335 ~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~  388 (751)
T 2xe4_A          335 ILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS-NYLVVAGRRA  388 (751)
T ss_dssp             EEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS-SEEEEEEEET
T ss_pred             EEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC-CEEEEEEEeC
Confidence            554443    36777777653 2122 233322  355666652 3344444444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.12  E-value=0.0027  Score=53.00  Aligned_cols=199  Identities=15%  Similarity=0.205  Sum_probs=122.5

Q ss_pred             EEEEcCCC--CCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEcc----CCC---EEEEEeC---CCcEEEEEcc
Q 021319           71 QLCWDPKH--ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP----DGT---HIAVGNR---DDELTILDVR  138 (314)
Q Consensus        71 ~l~~~~~~--~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~---~l~~~~~---d~~i~i~d~~  138 (314)
                      ++..+|.+  ..+++.....+-+.++|+ +|+.++.+.. +....+...|    .|+   ++++...   ++++.+|++.
T Consensus        30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            34444542  356777778899999999 6777666543 3333444333    233   2333333   4789999662


Q ss_pred             -CCeEeeeec-------cC-cceeeEEe--ccC-CC-eEEEEcCCceEEEEeCC---CC----CceeeeeecccceEEEE
Q 021319          139 -KFKPIHRRK-------FG-YEVNEIAW--NMT-GE-MFFLTTGNGTVEVLTYP---SL----RPLDTVVAHTAGCYCIA  198 (314)
Q Consensus       139 -~~~~~~~~~-------~~-~~~~~~~~--~~~-~~-~~~~~~~~g~~~~~~~~---~~----~~~~~~~~~~~~i~~i~  198 (314)
                       ...++....       .. ..+..++.  ++. +. ++++...+|.+..|.+.   ..    +.++++. ..+.+..+.
T Consensus       108 p~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~Egcv  186 (355)
T 3amr_A          108 GKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMA  186 (355)
T ss_dssp             TTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEE
T ss_pred             CCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEE
Confidence             222233321       11 44555555  553 43 56777788999888762   22    2334443 345688899


Q ss_pred             ECCCCCEEEEeeCCCeEEEeeCC-----CcEEEEEee--ecccCeEEEEE--ccCCc-EEEEec-CCceEEEEECC-CCC
Q 021319          199 IDPMGRYFAVGSADSLVSLWDIS-----EMLCVRTFT--KLEWPVRTISF--SHTGD-YIASAS-EDLFIDISNVH-TGR  266 (314)
Q Consensus       199 ~~~~~~~l~t~~~dg~i~vwd~~-----~~~~~~~~~--~~~~~v~~~~~--sp~~~-~l~s~s-~d~~v~v~~~~-~~~  266 (314)
                      .++....|+.+-.+..|..+|.+     +.+.+..+.  .....+..|++  .++++ ||+.++ .+....|||.. +.+
T Consensus       187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~  266 (355)
T 3amr_A          187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNK  266 (355)
T ss_dssp             EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred             EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCc
Confidence            99988899999888777777754     345555442  22346788887  55655 666666 56789999996 677


Q ss_pred             eEEEEe
Q 021319          267 TVHQIP  272 (314)
Q Consensus       267 ~~~~~~  272 (314)
                      .+..+.
T Consensus       267 ~vg~f~  272 (355)
T 3amr_A          267 YVADFR  272 (355)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777664

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.11  E-value=0.0027  Score=52.69  Aligned_cols=223  Identities=10%  Similarity=-0.002  Sum_probs=132.4

Q ss_pred             CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC----CceeeeEEe-cCceEEEEE
Q 021319           42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS----GKCSQQAEL-SGENINITY  116 (314)
Q Consensus        42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~----~~~~~~~~~-~~~~~~~~~  116 (314)
                      ..|+..+++....   ..  +......+..+.|++.++.+.++-...+.|..++...    ......... -.....+++
T Consensus        10 ~~I~~i~~~~~~~---~~--~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav   84 (316)
T 1ijq_A           10 HEVRKMTLDRSEY---TS--LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV   84 (316)
T ss_dssp             SSEEEEETTSCCC---EE--EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             CeEEEEECCCcce---Ee--hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence            4578878765321   11  1223455788999987666777777789999999875    221111111 123456778


Q ss_pred             ccCCCEE-EEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEc-CC-ceEEEEeCCCCCceeeee-ecc
Q 021319          117 KPDGTHI-AVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT-GN-GTVEVLTYPSLRPLDTVV-AHT  191 (314)
Q Consensus       117 ~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~-~~~  191 (314)
                      .+.+..| ++-...+.|.++++.......... .......++..|.+..++.+. .. +.|..++..... ...+. ..-
T Consensus        85 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~  163 (316)
T 1ijq_A           85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENI  163 (316)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSC
T ss_pred             eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCC
Confidence            7655545 455667889999986543221111 224567888888665555444 33 678777765432 22221 223


Q ss_pred             cceEEEEECCCCCEEEEee-CCCeEEEeeCCCcEEEEEeee---cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCe
Q 021319          192 AGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTK---LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT  267 (314)
Q Consensus       192 ~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~  267 (314)
                      ..++.+++++++..|..+. ..+.|..+|+.... .+.+..   .-.....+++. .+.++.+-...+.|...+..+|+.
T Consensus       164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             CCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence            4578999998776665554 55789999986422 222211   11235667774 466666777788999999877776


Q ss_pred             EEEEe
Q 021319          268 VHQIP  272 (314)
Q Consensus       268 ~~~~~  272 (314)
                      +..+.
T Consensus       242 ~~~i~  246 (316)
T 1ijq_A          242 VNLLA  246 (316)
T ss_dssp             CEEEE
T ss_pred             eEEEe
Confidence            65553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.08  E-value=0.0032  Score=52.35  Aligned_cols=205  Identities=7%  Similarity=-0.043  Sum_probs=123.3

Q ss_pred             ccEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           21 KKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        21 ~~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      ..+..++|.+.+.. +.+-...+.|..++.+.....   ...+.........+++.+.++.+.++-...+.|.+.+....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~---~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC---CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce---EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence            34668889886544 455456778888887643211   11122223445678888766667777777889999998654


Q ss_pred             ceeeeE-EecCceEEEEEccCCCEEEEEeC--CCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeE-EEEcCCceEE
Q 021319          100 KCSQQA-ELSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMF-FLTTGNGTVE  174 (314)
Q Consensus       100 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~g~~~  174 (314)
                      ...... .....+..+++.|.+..|+....  .+.|...++.......-. ..-...+.+++++.+..+ ++-...+.|.
T Consensus       112 ~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~  191 (318)
T 3sov_A          112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  191 (318)
T ss_dssp             SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence            322222 12234667888887777766653  467888877532211111 112346789999865544 4555678899


Q ss_pred             EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                      .+++...............+..+++.. +.++.+-...+.|..+|..+++....+
T Consensus       192 ~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          192 KSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence            998865332222222334567888863 445555666788999998766544444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.99  E-value=0.0061  Score=52.43  Aligned_cols=220  Identities=9%  Similarity=-0.026  Sum_probs=130.2

Q ss_pred             cccEEEEEECCCCCEEEEe-eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           20 KKKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~-~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      ...+..|+|++....|.-+ ...+.|+.++++...........+.........+++++.++++.++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            4567889999866554444 456788888775311000111122223456778888876666777777788999999876


Q ss_pred             CceeeeEE-ecCceEEEEEccCCCEEEEEeC--CCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEEE-cCCceE
Q 021319           99 GKCSQQAE-LSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLT-TGNGTV  173 (314)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~g~~  173 (314)
                      ........ .-..+..+++.|.+..|+....  .+.|...++........... -.....+++++.+..++.+ ...+.|
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I  270 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  270 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence            54433332 2234677899997777766653  36788888764322221111 2456789999766655554 567889


Q ss_pred             EEEeCCCCCceeeeee--cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319          174 EVLTYPSLRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       174 ~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  240 (314)
                      ..+++...........  ....+..+++. .+.++.+-...+.|..+|..++..+..+.........|.
T Consensus       271 ~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          271 SSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             EEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             EEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence            9998865433222221  22346677774 344555666677899999777765555543322334443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.98  E-value=0.0075  Score=53.03  Aligned_cols=197  Identities=16%  Similarity=0.175  Sum_probs=117.3

Q ss_pred             EEEEEEcCC-CCCEEEEEeCCCcEEEEeCCCCceeeeEEec----CceEEEEE-------ccCCCEEEEEeCCC------
Q 021319           69 VDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELS----GENINITY-------KPDGTHIAVGNRDD------  130 (314)
Q Consensus        69 v~~l~~~~~-~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~l~~~~~d~------  130 (314)
                      ...|+++|. +++++++-...+.|++.|...+.........    .....++|       ++++..|++....+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            567899983 4556666665678999999887765544332    23677999       99999777776554      


Q ss_pred             -cEEEEEccC-CeEe-----eeeccCcceeeEEecc-CCCeEEEEcCCceEEEEeCC-------CCCc-----------e
Q 021319          131 -ELTILDVRK-FKPI-----HRRKFGYEVNEIAWNM-TGEMFFLTTGNGTVEVLTYP-------SLRP-----------L  184 (314)
Q Consensus       131 -~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~-------~~~~-----------~  184 (314)
                       .+.+++... ....     ...........++.+| ++.++++-...+.+..++..       ....           .
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~  300 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF  300 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred             ceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence             255665332 1111     1111123456778888 45666677788899999876       3321           1


Q ss_pred             eeee--ecccceEEEEECCCCCEEEEee-CCCeEEEeeCC--CcEE--EEEeeec----------------ccCeEEEEE
Q 021319          185 DTVV--AHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDIS--EMLC--VRTFTKL----------------EWPVRTISF  241 (314)
Q Consensus       185 ~~~~--~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~--~~~~--~~~~~~~----------------~~~v~~~~~  241 (314)
                      ..+.  ......+.++|+|+|+.|..+. ....|+.++..  ....  ...+-+.                ..|-..++.
T Consensus       301 ~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v  380 (496)
T 3kya_A          301 KQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV  380 (496)
T ss_dssp             EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred             ceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence            1211  1234568999999999655554 55788886653  3321  0122111                112113444


Q ss_pred             c-------cCCcEEEEecCCceEEEEECCCCC
Q 021319          242 S-------HTGDYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       242 s-------p~~~~l~s~s~d~~v~v~~~~~~~  266 (314)
                      .       +++.+.++=+....|+.++ .+|.
T Consensus       381 d~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~  411 (496)
T 3kya_A          381 KNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI  411 (496)
T ss_dssp             ECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB
T ss_pred             ccccccccCCCeEEEEECCCCEEEEEe-CCCC
Confidence            4       4566666667778888887 4554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.96  E-value=0.0059  Score=51.49  Aligned_cols=226  Identities=15%  Similarity=0.121  Sum_probs=119.5

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee---cCCCCEEEEEEcCC---CCCEEEEEeCC-----
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPK---HADLIATASGD-----   88 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~---~~~~l~s~~~D-----   88 (314)
                      -..-..++|.|+|.++++ ..++.|++++ + ..  ......+.   ........++++|+   ++.+.++-...     
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~-g~--~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-E-GR--LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE-T-TE--EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE-C-CC--ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            445679999999986665 4568888887 2 11  11111111   12345788999997   44455544432     


Q ss_pred             CcEEEEeCCCCcee---eeEE-ec---C---ceEEEEEccCCCEEEEEeCC-------------CcEEEEEccCCe----
Q 021319           89 KTVRLWDARSGKCS---QQAE-LS---G---ENINITYKPDGTHIAVGNRD-------------DELTILDVRKFK----  141 (314)
Q Consensus        89 ~~v~iwd~~~~~~~---~~~~-~~---~---~~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~----  141 (314)
                      ..|..++...+...   .... +.   .   ....++|.|||.+.++.+..             +.|.-++....-    
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            67778877644221   1111 11   1   12368899999766554321             345555543210    


Q ss_pred             --------EeeeeccC-cceeeEEecc-CCCeEEEEcCCce--------EEEEeCCC----------------CCceeee
Q 021319          142 --------PIHRRKFG-YEVNEIAWNM-TGEMFFLTTGNGT--------VEVLTYPS----------------LRPLDTV  187 (314)
Q Consensus       142 --------~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~g~--------~~~~~~~~----------------~~~~~~~  187 (314)
                              .......+ .....++|++ .+.++++-...+.        +.......                ..++..+
T Consensus       185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence                    00000011 2256678888 6676666554443        44332111                0122222


Q ss_pred             eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE----E--EEEeeecccCeEEEEEccCCcEEEEec
Q 021319          188 VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML----C--VRTFTKLEWPVRTISFSHTGDYIASAS  252 (314)
Q Consensus       188 ~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~----~--~~~~~~~~~~v~~~~~sp~~~~l~s~s  252 (314)
                       .+...+..++| .+|.++++.-..+.|...++....    .  ...+...-..+..+++.|||.+.++..
T Consensus       265 -~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 -PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             -TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             -CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence             12234667777 467777666666778877765321    1  122222224678899999997766553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=0.0088  Score=52.61  Aligned_cols=240  Identities=10%  Similarity=0.046  Sum_probs=133.0

Q ss_pred             cEEEEEECCC-C-CEEEEeeCCCcEEEeecCCCCCCceeeEEeec--CCCCEEEEEE-------cCCCCCEEEEEeCCC-
Q 021319           22 KVHSVAWNCT-G-TKLASGSVDQTARVWHIEPHGHGKVKDIELRG--HADSVDQLCW-------DPKHADLIATASGDK-   89 (314)
Q Consensus        22 ~V~~v~~s~~-g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~--h~~~v~~l~~-------~~~~~~~l~s~~~D~-   89 (314)
                      ....|+|+|+ . +++++-...+.|++.|.+..   .+..+.-.+  .......++|       ++++..++++-..++ 
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            4678899984 4 44555444567777776542   222211111  2235789999       887643554444432 


Q ss_pred             -----cEEEEeCCC-Ccee-----eeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEcc-------CCeE--------
Q 021319           90 -----TVRLWDARS-GKCS-----QQAELSGENINITYKPDG-THIAVGNRDDELTILDVR-------KFKP--------  142 (314)
Q Consensus        90 -----~v~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~-------~~~~--------  142 (314)
                           .|.+.+... +...     ...........++.+|++ .++++-..++.|..+|+.       +...        
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence                 256666443 2321     122222344567888954 445556677779999987       3322        


Q ss_pred             ------eeeeccCcceeeEEeccCCCe-EEEEcCCceEEEEeCCCCC-ce---eeeeec---------------ccceE-
Q 021319          143 ------IHRRKFGYEVNEIAWNMTGEM-FFLTTGNGTVEVLTYPSLR-PL---DTVVAH---------------TAGCY-  195 (314)
Q Consensus       143 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~---~~~~~~---------------~~~i~-  195 (314)
                            +...........++++|+++. +++-.....|+.++..... .+   ..+.+.               -..+. 
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~  376 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ  376 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred             ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence                  111222234568999999995 5555677888887653321 11   122221               01244 


Q ss_pred             EEEEC-------CCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc------------------------cCeEEEEEccC
Q 021319          196 CIAID-------PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE------------------------WPVRTISFSHT  244 (314)
Q Consensus       196 ~i~~~-------~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~------------------------~~v~~~~~sp~  244 (314)
                      .++.+       +++.+.++-..+..|+.++. ++. +.++-+..                        .....|+++++
T Consensus       377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~  454 (496)
T 3kya_A          377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV  454 (496)
T ss_dssp             EEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred             EEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence            45554       45666666666789999994 553 34443210                        12456777775


Q ss_pred             -CcEEEEecCCceEEEEECCCCC
Q 021319          245 -GDYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       245 -~~~l~s~s~d~~v~v~~~~~~~  266 (314)
                       +.+.++=+....|+.+++....
T Consensus       455 ~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          455 KEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             TTEEEEEETTTTEEEEEEECCCC
T ss_pred             CCEEEEEeCCCCEEEEEECCCCc
Confidence             6655555666677776665433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.93  E-value=0.0041  Score=51.87  Aligned_cols=172  Identities=13%  Similarity=0.185  Sum_probs=108.2

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccC----CC---eEEEEc-C--CceEEEEeCC-CCCceeee
Q 021319          119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT----GE---MFFLTT-G--NGTVEVLTYP-SLRPLDTV  187 (314)
Q Consensus       119 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~-~--~g~~~~~~~~-~~~~~~~~  187 (314)
                      ....++.....+.+.+||+ ..+.+..... ...+.+..-|.    +.   ..+++. .  ++++.+|.+. ...++..+
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i  116 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM  116 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence            3345555667778999999 7777666544 34555544442    22   233333 3  5789999774 22334433


Q ss_pred             ee------cc-cceEEEEE--CCC-CC-EEEEeeCCCeEEEeeCC-------CcEEEEEeeecccCeEEEEEccCCcEEE
Q 021319          188 VA------HT-AGCYCIAI--DPM-GR-YFAVGSADSLVSLWDIS-------EMLCVRTFTKLEWPVRTISFSHTGDYIA  249 (314)
Q Consensus       188 ~~------~~-~~i~~i~~--~~~-~~-~l~t~~~dg~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~sp~~~~l~  249 (314)
                      ..      .. ..++.+++  +|. ++ ++++...+|.+..|++.       +.+.++++... ..+..+...+...+|+
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLY  195 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEE
Confidence            11      11 45677777  774 54 67788889999999983       33556666543 4678888999999999


Q ss_pred             EecCCceEEEEECC-----CCCeEEEEecc---CccceeEE--cCCCC-eeEEEe
Q 021319          250 SASEDLFIDISNVH-----TGRTVHQIPCR---AAMNSVEW--NPKYN-LLAYAG  293 (314)
Q Consensus       250 s~s~d~~v~v~~~~-----~~~~~~~~~~~---~~i~~v~~--~~~~~-~la~~~  293 (314)
                      .+-+|.-|..++.+     +++.+..+...   ..+..++.  .+++. +|+.++
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence            99999778888854     23444444322   35677777  45555 555555

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.92  E-value=0.015  Score=54.55  Aligned_cols=209  Identities=10%  Similarity=-0.023  Sum_probs=122.5

Q ss_pred             cccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        20 ~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      ...+..|+|.+... ++++-...+.|+.++++...........+.........|++++.++++.++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            34567888988554 45555566778888775321100111122323455678888877667777878889999999875


Q ss_pred             CceeeeEE-ecCceEEEEEccCCCEEEEEeCC--CcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEEE-cCCceE
Q 021319           99 GKCSQQAE-LSGENINITYKPDGTHIAVGNRD--DELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLT-TGNGTV  173 (314)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~g~~  173 (314)
                      ........ .-..+..+++.|.+..|+.....  +.|...++........... ......+++.+....++++ ...+.|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            54333222 12346779999987777666542  5788888765433222222 2356788888665555444 566788


Q ss_pred             EEEeCCCCCceeeeee--cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          174 EVLTYPSLRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       174 ~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                      ..+++........+..  .-.....|++.. ++++++-...+.|...|..++..+..+
T Consensus       583 ~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            8888765443322222  123456777743 344445556678888886665444333

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.90  E-value=0.013  Score=53.38  Aligned_cols=226  Identities=6%  Similarity=-0.064  Sum_probs=125.0

Q ss_pred             CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceee-eEEec-CceEEEEEcc
Q 021319           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ-QAELS-GENINITYKP  118 (314)
Q Consensus        41 D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~-~~~~~-~~~~~~~~~~  118 (314)
                      ...|+..+++......  . .+......+..+++++.++.++++=...+.|..+++....... ..... ..+..+++.+
T Consensus        17 ~~~I~~i~~~~~~~~~--~-~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~   93 (619)
T 3s94_A           17 RRDLRLVDATNGKENA--T-IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   93 (619)
T ss_dssp             SSBEEEECCC------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred             cccEEEEeCCCCcceE--E-EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence            3567776665321000  1 1112234467889998766666666667888888886542211 11111 3466788888


Q ss_pred             CCCEEEE-EeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcC--CceEEEEeCCCCCceeeeeecccce
Q 021319          119 DGTHIAV-GNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTG--NGTVEVLTYPSLRPLDTVVAHTAGC  194 (314)
Q Consensus       119 ~~~~l~~-~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~i  194 (314)
                      .+..|+. -...+.|.+.++.......-. ........++..|....++.+..  .+.+...++...............+
T Consensus        94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P  173 (619)
T 3s94_A           94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP  173 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSE
T ss_pred             cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCC
Confidence            6655554 456678999988654221111 22235678888887665555542  4677766665433322222234568


Q ss_pred             EEEEECCCCCEEEEee-CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE
Q 021319          195 YCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ  270 (314)
Q Consensus       195 ~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~  270 (314)
                      +.+++++++..|..+. ..+.|...|+............-.....+++..+ ....+-...+.|...|..+|+....
T Consensus       174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence            8999999766655554 4568999998654332222211112245666655 4555555678899999887765433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.87  E-value=0.0081  Score=50.06  Aligned_cols=224  Identities=12%  Similarity=0.090  Sum_probs=116.1

Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-----cCceEEEEEccCCCEEEEEeCCCcEEEE-E-cc
Q 021319           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-----SGENINITYKPDGTHIAVGNRDDELTIL-D-VR  138 (314)
Q Consensus        66 ~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~i~-d-~~  138 (314)
                      ...+.++.+.+. +..++ ++.++.| +.....|+--.....     ......+.+.+ +..+++ +..+.+..- | -+
T Consensus        35 ~~~~~~v~~~~~-~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDR-HHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLHTTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSS-SCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEEESSTTS
T ss_pred             CCcEEEEEECCC-CcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEEECCCCC
Confidence            346888888654 34555 5566765 333444432111111     12345677765 444444 445544332 1 23


Q ss_pred             CCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEeeCCCeEE
Q 021319          139 KFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVS  216 (314)
Q Consensus       139 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~  216 (314)
                      +.+.+... ........+....++..++++ ..|.+..-. ...+.-. ........+..+++.+++++++.+...+..+
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~  187 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTK-DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS  187 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEES-STTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEE
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEc-CCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence            33333221 112234556655556555544 455443221 1121111 1123345688999999999888776555555


Q ss_pred             EeeC--CCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-----ccCccceeEEcCCCCee
Q 021319          217 LWDI--SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-----CRAAMNSVEWNPKYNLL  289 (314)
Q Consensus       217 vwd~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-----~~~~i~~v~~~~~~~~l  289 (314)
                      -.|-  .+.+.+.  ......+..+.++|++++++ ++.+|.+.+++...|+.-..+.     ....+.++++.|++.++
T Consensus       188 S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (327)
T 2xbg_A          188 TWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVW  264 (327)
T ss_dssp             EECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEE
T ss_pred             EeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEE
Confidence            5553  3344332  23345688899999987665 4567777776432233222221     12347889999887777


Q ss_pred             EEEecCCcccc
Q 021319          290 AYAGDDKNKYQ  300 (314)
Q Consensus       290 a~~~~d~~~~~  300 (314)
                      +.+. ++.+|.
T Consensus       265 ~~g~-~g~i~~  274 (327)
T 2xbg_A          265 LAGG-AGALLC  274 (327)
T ss_dssp             EEES-TTCEEE
T ss_pred             EEeC-CCeEEE
Confidence            6554 444443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.85  E-value=0.026  Score=55.17  Aligned_cols=276  Identities=16%  Similarity=0.169  Sum_probs=140.1

Q ss_pred             cccEEEEEECCC------CCEEEEeeC-CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcC-CCCCEEEEEeCCCcE
Q 021319           20 KKKVHSVAWNCT------GTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP-KHADLIATASGDKTV   91 (314)
Q Consensus        20 ~~~V~~v~~s~~------g~~l~s~~~-D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~D~~v   91 (314)
                      ...|.|+++.|.      +++++.|.. |++|+|+.++.-  .......+.+ .....++.+.. .+..+|..|-.||.+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l--~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l  629 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF--ELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGAL  629 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC--CEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC--CeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeE
Confidence            457999999864      368888886 999999998642  2222223322 12333443321 223467788899988


Q ss_pred             EEE--eCCCCceeee--EEecCceEEEE-EccCCC-EEEEEeCCCcEEEEEccCCeEeeeeccCcce-eeEEeccC--CC
Q 021319           92 RLW--DARSGKCSQQ--AELSGENINIT-YKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEV-NEIAWNMT--GE  162 (314)
Q Consensus        92 ~iw--d~~~~~~~~~--~~~~~~~~~~~-~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~--~~  162 (314)
                      ..+  |..+|.....  ..+......+. +...+. .+++.+. .-..++--. .+....-.....+ ....|+..  .+
T Consensus       630 ~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~-rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~  707 (1158)
T 3ei3_A          630 FYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSD-RPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPD  707 (1158)
T ss_dssp             EEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESS-SCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTT
T ss_pred             EEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECC-CCEEEEEcC-CceEEeccChHHhceEeccCcccCCC
Confidence            644  4445544322  22233333332 222232 2333333 332233222 1111111111112 12233321  24


Q ss_pred             eEEEEcCCceEEEEeCCCCCceeee-eecccceEEEEECCCCCEEEEeeCC-----------------------------
Q 021319          163 MFFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSAD-----------------------------  212 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~t~~~d-----------------------------  212 (314)
                      .++... ++.+++...+..+..... ..-...+..++++|..+.++.+..+                             
T Consensus       708 g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1158)
T 3ei3_A          708 SLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS  786 (1158)
T ss_dssp             EEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred             cEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence            454444 455888877654433221 1223557778888776655443311                             


Q ss_pred             --------------------CeEEEeeCCCcEEEEEeeecc-cCeEEE---EEccC-CcEEEEec----------CCceE
Q 021319          213 --------------------SLVSLWDISEMLCVRTFTKLE-WPVRTI---SFSHT-GDYIASAS----------EDLFI  257 (314)
Q Consensus       213 --------------------g~i~vwd~~~~~~~~~~~~~~-~~v~~~---~~sp~-~~~l~s~s----------~d~~v  257 (314)
                                          ..|++.|..+.+.+..+.-.+ ..+.++   .|..+ ..+|+.|.          ..|.|
T Consensus       787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri  866 (1158)
T 3ei3_A          787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI  866 (1158)
T ss_dssp             CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred             ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence                                236666666655554443211 123333   34332 47888775          24889


Q ss_pred             EEEECCCCC--eEEEEeccCccceeE-EcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          258 DISNVHTGR--TVHQIPCRAAMNSVE-WNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       258 ~v~~~~~~~--~~~~~~~~~~i~~v~-~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      .++++..++  .+.+...++.+++++ |  +|.+||..|          ..++||++.+
T Consensus       867 ~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~ig----------~~l~vy~l~~  913 (1158)
T 3ei3_A          867 VVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASIN----------STVRLYEWTT  913 (1158)
T ss_dssp             EEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEET----------TEEEEEEECT
T ss_pred             EEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEcC----------CEEEEEECCC
Confidence            999986433  223334577888885 5  366666554          3577777753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.84  E-value=0.02  Score=53.62  Aligned_cols=225  Identities=9%  Similarity=-0.025  Sum_probs=131.2

Q ss_pred             CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc----eeeeEE-ecCceEEEE
Q 021319           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAE-LSGENINIT  115 (314)
Q Consensus        41 D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~----~~~~~~-~~~~~~~~~  115 (314)
                      ...|+..+++....   .  .+......+.++++++..+.++++-...+.|+.+++....    ...... .......++
T Consensus       403 ~~~Ir~i~l~~~~~---~--~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA  477 (791)
T 3m0c_C          403 RHEVRKMTLDRSEY---T--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  477 (791)
T ss_dssp             BSSEEEECTTSCCC---E--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             ccceeEeeccCCcc---e--eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence            35677776654321   1  1223345677899988666666777777889999886431    111111 113345688


Q ss_pred             EccCCCEEE-EEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEc-CC-ceEEEEeCCCCCceeeeeecc
Q 021319          116 YKPDGTHIA-VGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTT-GN-GTVEVLTYPSLRPLDTVVAHT  191 (314)
Q Consensus       116 ~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~  191 (314)
                      +.+.+..|+ +-...+.|.+.++......... ........++..|....++.+. .. +.|...++........+...-
T Consensus       478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l  557 (791)
T 3m0c_C          478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI  557 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred             eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence            887775555 4455678999988654322222 1223477888888755555554 33 678888776544322222233


Q ss_pred             cceEEEEECCCCCEEEEee-CCCeEEEeeCCCcEEEEEeeec--ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeE
Q 021319          192 AGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV  268 (314)
Q Consensus       192 ~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~  268 (314)
                      ..++.|++++.+..|+.+. ....|...++........+...  -.....|++. .+.+.++-...+.|...+..+|+.+
T Consensus       558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcce
Confidence            5689999998766665554 4568999998644332222221  1123456653 2344555566788888888787666


Q ss_pred             EEE
Q 021319          269 HQI  271 (314)
Q Consensus       269 ~~~  271 (314)
                      ..+
T Consensus       637 ~~l  639 (791)
T 3m0c_C          637 NLL  639 (791)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.78  E-value=0.00028  Score=65.40  Aligned_cols=205  Identities=10%  Similarity=-0.031  Sum_probs=115.1

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC----CceeeeEEe-cCceEEEEEccCC-CEEEEEeCCCcEEEEEccCC
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARS----GKCSQQAEL-SGENINITYKPDG-THIAVGNRDDELTILDVRKF  140 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~----~~~~~~~~~-~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~  140 (314)
                      ..+..++|++..+.++++-...+.|+.+++..    ......... ......+++.+.+ +++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            34567888886655555555678899998865    111111110 1123346676544 44444455678999987654


Q ss_pred             eEeeeecc-CcceeeEEeccCCCeEEEEc-CC-ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEE-EEeeCCCeEE
Q 021319          141 KPIHRRKF-GYEVNEIAWNMTGEMFFLTT-GN-GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF-AVGSADSLVS  216 (314)
Q Consensus       141 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~t~~~dg~i~  216 (314)
                      ........ ......+++.|.+..++++. .. +.|..+++........+......++.|+++|++..| ++-...+.|.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            33222221 23467788888655544443 22 677766654322211111122346789999875544 4455567899


Q ss_pred             EeeCCCcEEEEEeee--cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319          217 LWDISEMLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       217 vwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      .+|+........+..  .-.....|++..+ .++++....+.|..++..+|+.+..+.
T Consensus       566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            999864322222211  1112334555443 555566677889999988887776654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.77  E-value=0.00027  Score=65.42  Aligned_cols=208  Identities=10%  Similarity=-0.003  Sum_probs=118.1

Q ss_pred             cEEEEEECCCCCEEEEe-eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319           22 KVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK  100 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~-~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~  100 (314)
                      .+..|+|++.+..|.-+ ...+.|+.++++...........+.........+++.+.+++++++-...+.|.+.++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            45678888876665555 45678888887631100000011111112345677775556666666677899999987554


Q ss_pred             eeeeEEe-cCceEEEEEccCCCEEEEEeCC--CcEEEEEccCCeEeeee-ccCcceeeEEeccCC-CeEEEEcCCceEEE
Q 021319          101 CSQQAEL-SGENINITYKPDGTHIAVGNRD--DELTILDVRKFKPIHRR-KFGYEVNEIAWNMTG-EMFFLTTGNGTVEV  175 (314)
Q Consensus       101 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~  175 (314)
                      ....... ......+++.|.+..|+.+...  +.|..+++......... ......+.+++++.+ .++++-...+.|..
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  566 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence            3322221 1234567788876666655432  56777766432211111 112346778999875 45555566788999


Q ss_pred             EeCCCCCceeeee--ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319          176 LTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (314)
Q Consensus       176 ~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~  230 (314)
                      +++........+.  .....+..|++..+ .++++....+.|..+|..+++.+..+.
T Consensus       567 ~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          567 IDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            9886433222111  11233456666654 455566667899999988887776654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.69  E-value=0.03  Score=51.13  Aligned_cols=223  Identities=11%  Similarity=0.033  Sum_probs=135.0

Q ss_pred             CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-CceEEEEEcc
Q 021319           40 VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKP  118 (314)
Q Consensus        40 ~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~  118 (314)
                      ....|+..+++....  .....+. .-..+..++|++.++.+.++-..++.|..+++............ ..+..+++.+
T Consensus        13 ~~~~I~~i~l~~~~~--~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~   89 (628)
T 4a0p_A           13 RRADIRRISLETNNN--NVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDW   89 (628)
T ss_dssp             ETTEEEEEESSCTTC--EEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET
T ss_pred             eCCcEEEEECCCCCc--ceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEe
Confidence            346778877764321  1111222 23457799999877767777777899999998755433322222 2355677776


Q ss_pred             CCCEEE-EEeCCCcEEEEEccCCe--EeeeeccCcceeeEEeccCCCeEEEEc--CCceEEEEeCCCCCceeeeeecccc
Q 021319          119 DGTHIA-VGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTT--GNGTVEVLTYPSLRPLDTVVAHTAG  193 (314)
Q Consensus       119 ~~~~l~-~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~  193 (314)
                      .+..|+ +-...+.|.+.++....  .+.. ........++..|....++.+.  ..+.|...++...... .+......
T Consensus        90 ~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~  167 (628)
T 4a0p_A           90 LGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGR  167 (628)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSS
T ss_pred             CCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCC
Confidence            655554 44556778888875432  2211 2223567888888655555554  2567777776554432 22233456


Q ss_pred             eEEEEECCCCCEEEEee-CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEE
Q 021319          194 CYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH  269 (314)
Q Consensus       194 i~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~  269 (314)
                      ++.+++++++..|..+. ..+.|...|+..... +.+...-.....+++.. +.+..|-...+.|...|..+|+...
T Consensus       168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~  242 (628)
T 4a0p_A          168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT  242 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             cceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence            89999999776665554 457899999864322 22222222345677754 4555565667889988887775443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.64  E-value=0.036  Score=50.59  Aligned_cols=198  Identities=6%  Similarity=0.001  Sum_probs=122.3

Q ss_pred             ccEEEEEECCCCCEEE-EeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~-s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      ..+..|+|++++..|. +-..++.|+.++++...   ... .+..-......+++++.++++.++-...+.|.+.++...
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~---~~~-v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA---LEH-VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEE-EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC---cEE-EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence            3577899998766554 44567888888775321   111 122222446678888766667777777889999998654


Q ss_pred             ceeeeE-EecCceEEEEEccCCCEEEEEeC--CCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE-EEcCCceEEE
Q 021319          100 KCSQQA-ELSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF-LTTGNGTVEV  175 (314)
Q Consensus       100 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~  175 (314)
                      ...... ..-..+..+++.|....|+....  .+.|...++.......-.........+++.+.+..++ +-...+.+..
T Consensus       113 ~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~  192 (628)
T 4a0p_A          113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIES  192 (628)
T ss_dssp             TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEE
Confidence            432222 12234678899987666766653  4567777765432222122334577889988655544 4456788999


Q ss_pred             EeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (314)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~  224 (314)
                      +++..... ..+......+..+++.. +.++++-...+.|...|..+++
T Consensus       193 ~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          193 SNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             EcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            88865433 33333344567888865 4455555567889888865543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.62  E-value=0.023  Score=47.87  Aligned_cols=220  Identities=16%  Similarity=0.143  Sum_probs=119.3

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe------cCceEEEEEccC---CCEEEEEeC-C-----Cc
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL------SGENINITYKPD---GTHIAVGNR-D-----DE  131 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~------~~~~~~~~~~~~---~~~l~~~~~-d-----~~  131 (314)
                      .....++|.|++ .+++ +..++.|++++  .+........      ......++++|+   +..|.++.. .     ..
T Consensus        31 ~~P~~ia~~pdG-~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           31 EVPWALAFLPDG-GMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             SCEEEEEECTTS-CEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCceEEEEcCCC-eEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            346789999975 4554 45679999998  4442211111      234677999998   555555443 2     56


Q ss_pred             EEEEEccCC-----eEeee-ec----cCcceeeEEeccCCCeEEEEcC-------------CceEEEEeCCCCC------
Q 021319          132 LTILDVRKF-----KPIHR-RK----FGYEVNEIAWNMTGEMFFLTTG-------------NGTVEVLTYPSLR------  182 (314)
Q Consensus       132 i~i~d~~~~-----~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~-------------~g~~~~~~~~~~~------  182 (314)
                      |..++....     +.+.. ..    .......+++.|+|.++++...             .|.|..++....-      
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            777776532     11211 11    0123467899999976665432             2566666543210      


Q ss_pred             ------ceeee-eecccceEEEEECC-CCCEEEEeeCCCeE------EEeeCCCcE------------------EEEEee
Q 021319          183 ------PLDTV-VAHTAGCYCIAIDP-MGRYFAVGSADSLV------SLWDISEML------------------CVRTFT  230 (314)
Q Consensus       183 ------~~~~~-~~~~~~i~~i~~~~-~~~~l~t~~~dg~i------~vwd~~~~~------------------~~~~~~  230 (314)
                            ....+ .++ ..+..++|+| +++++++-.....+      .+.-+..+.                  .+..+ 
T Consensus       187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-  264 (352)
T 2ism_A          187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-  264 (352)
T ss_dssp             TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred             cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence                  01111 122 2367889999 67665544333321      122211111                  11111 


Q ss_pred             ecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCe------EEEE-eccCccceeEEcCCCCeeEEEe
Q 021319          231 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT------VHQI-PCRAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       231 ~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~------~~~~-~~~~~i~~v~~~~~~~~la~~~  293 (314)
                      ........++| .+|.++++.-..+.|...+......      ...+ .....+..|++.|++.++++..
T Consensus       265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            11123566777 6777777766777787777654321      1222 2235789999999998876654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.48  E-value=0.047  Score=49.73  Aligned_cols=201  Identities=6%  Similarity=-0.058  Sum_probs=115.2

Q ss_pred             ccEEEEEECCCCCEEEEee-CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           21 KKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~-~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      +....|+|++.+..|.-+. ..+.|..++++...  . ....+..-......+++++.++++.++-...+.|.+.+....
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~--~-~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--S-VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC--c-eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            4577889998766655444 46777777765321  1 111222223567889998876677777778899999998755


Q ss_pred             ceeeeE-EecCceEEEEEccCCCEEEEEeC--CCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeE-EEEcCCceEE
Q 021319          100 KCSQQA-ELSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMF-FLTTGNGTVE  174 (314)
Q Consensus       100 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~g~~~  174 (314)
                      ...... ..-..+..+++.|.+..|+....  .+.|...++.-.....-. ........++..+....+ ++-...+.|.
T Consensus       117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~  196 (619)
T 3s94_A          117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  196 (619)
T ss_dssp             SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence            432222 11234556888887666666654  345666665432211111 122356788888865544 4445667888


Q ss_pred             EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE
Q 021319          175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~  225 (314)
                      .+++..........+....+..+++..+ ....+-...+.|...|..+++.
T Consensus       197 ~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          197 KSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             EecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            8887653322222212233456777755 4455555667888888766543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.47  E-value=0.037  Score=46.52  Aligned_cols=181  Identities=17%  Similarity=0.185  Sum_probs=103.5

Q ss_pred             CCCcEEEEeCCC--CceeeeEEecC--------ceEEEEEcc--CCC--EEEEEeC--CCcEEEEEccCC--e--Eeeee
Q 021319           87 GDKTVRLWDARS--GKCSQQAELSG--------ENINITYKP--DGT--HIAVGNR--DDELTILDVRKF--K--PIHRR  146 (314)
Q Consensus        87 ~D~~v~iwd~~~--~~~~~~~~~~~--------~~~~~~~~~--~~~--~l~~~~~--d~~i~i~d~~~~--~--~~~~~  146 (314)
                      .+|.|.++|..+  ++.. .+...+        ....+.+.+  ++.  ++++...  +..+.+|++...  .  .+...
T Consensus        81 ~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence            689999999873  3322 222222        344566544  453  4445444  456778776542  2  12222


Q ss_pred             cc--CcceeeEEeccCCCeEEEEc-----------------CCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE
Q 021319          147 KF--GYEVNEIAWNMTGEMFFLTT-----------------GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA  207 (314)
Q Consensus       147 ~~--~~~~~~~~~~~~~~~~~~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  207 (314)
                      ..  -...+.++..++|..++...                 ..|.+..++.  .+ +..+...-...+.++|+||++.|.
T Consensus       160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lY  236 (355)
T 3sre_A          160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVY  236 (355)
T ss_dssp             CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEE
T ss_pred             ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEE
Confidence            22  23568888888888776653                 1245555543  22 223333334578999999998877


Q ss_pred             Eee-CCCeEEEeeCCC-cE--EEEEeeecccCeEEEEEcc-CCcEEEEecCC-ceEEEEECC--CCCeEEEEe
Q 021319          208 VGS-ADSLVSLWDISE-ML--CVRTFTKLEWPVRTISFSH-TGDYIASASED-LFIDISNVH--TGRTVHQIP  272 (314)
Q Consensus       208 t~~-~dg~i~vwd~~~-~~--~~~~~~~~~~~v~~~~~sp-~~~~l~s~s~d-~~v~v~~~~--~~~~~~~~~  272 (314)
                      .+. ..+.|..|++.. +.  ..+.+ ........++..+ +|.+.+++..+ +.|..++..  .+..+..+.
T Consensus       237 vadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          237 IAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             EEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            665 467899999863 32  22333 3345567899999 59988877655 344444433  234444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.20  E-value=0.079  Score=44.53  Aligned_cols=163  Identities=13%  Similarity=0.158  Sum_probs=92.1

Q ss_pred             CCCcEEEEEccCC--eE--eeeec-----cCcceeeEEecc--CCC--eEEEEcC--CceEEEEeCCCCCce----eeee
Q 021319          128 RDDELTILDVRKF--KP--IHRRK-----FGYEVNEIAWNM--TGE--MFFLTTG--NGTVEVLTYPSLRPL----DTVV  188 (314)
Q Consensus       128 ~d~~i~i~d~~~~--~~--~~~~~-----~~~~~~~~~~~~--~~~--~~~~~~~--~g~~~~~~~~~~~~~----~~~~  188 (314)
                      .+|.|.++|+.+.  +.  +....     ..+....+...+  ++.  .+++-..  ++.+.++++......    ..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6888999998732  22  11111     113444555544  343  3444333  567777776443222    2222


Q ss_pred             ec-ccceEEEEECCCCCEEEEee-----------------CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319          189 AH-TAGCYCIAIDPMGRYFAVGS-----------------ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS  250 (314)
Q Consensus       189 ~~-~~~i~~i~~~~~~~~l~t~~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  250 (314)
                      +. -..++.+++.++|++.++..                 ..|.|..+|..+.+.  ...+. ...+.++||||+++|..
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~--~~~~l-~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV--VAEGF-DFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEE--EEEEE-SSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEE--eecCC-cccCcceECCCCCEEEE
Confidence            21 13578999999999887754                 124555555532221  22222 34688999999987776


Q ss_pred             e-cCCceEEEEECCC-CCeE--EEEeccCccceeEEcC-CCCeeEEEe
Q 021319          251 A-SEDLFIDISNVHT-GRTV--HQIPCRAAMNSVEWNP-KYNLLAYAG  293 (314)
Q Consensus       251 ~-s~d~~v~v~~~~~-~~~~--~~~~~~~~i~~v~~~~-~~~~la~~~  293 (314)
                      + +....|..+++.. ++.-  +.+...+..-.++..+ +|++.+++.
T Consensus       238 adt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             EeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence            5 4678899999863 4322  2233334456778887 587766554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.12  E-value=0.085  Score=43.61  Aligned_cols=203  Identities=8%  Similarity=0.059  Sum_probs=122.4

Q ss_pred             ecccccEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeec----CC--CCEEEEEE---cCCCCCEEEEEe
Q 021319           17 TGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRG----HA--DSVDQLCW---DPKHADLIATAS   86 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~----h~--~~v~~l~~---~~~~~~~l~s~~   86 (314)
                      .+..-.-.++.|.+.... +++.-..++|..|+....   ......+.+    ..  ..+..+.|   .|. +.+++...
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~   84 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---SHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMK   84 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTC---CEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEE
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCC---eEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEc
Confidence            333344557889775544 555558999999987532   122222322    11  13578899   576 45655433


Q ss_pred             -------------CCCcEEEEeCC---CCceeeeEEec----C----------ceEEEEEccCCCEEEEEeCC-CcEEEE
Q 021319           87 -------------GDKTVRLWDAR---SGKCSQQAELS----G----------ENINITYKPDGTHIAVGNRD-DELTIL  135 (314)
Q Consensus        87 -------------~D~~v~iwd~~---~~~~~~~~~~~----~----------~~~~~~~~~~~~~l~~~~~d-~~i~i~  135 (314)
                                   .+..|..+|+.   +++......+.    +          ....++..++|+..++++.. +.|..+
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV  164 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence                         26889999998   77765544432    1          24468899999999988888 877777


Q ss_pred             EccCCeEe-eeecc-----CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc--eeeee-ec---ccceEE-EEECCC
Q 021319          136 DVRKFKPI-HRRKF-----GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP--LDTVV-AH---TAGCYC-IAIDPM  202 (314)
Q Consensus       136 d~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~-~~---~~~i~~-i~~~~~  202 (314)
                      +....... .-...     ..-.+.++++|++..+++....|.+..++......  +..-. +.   ...... +....+
T Consensus       165 ~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~  244 (334)
T 2p9w_A          165 SADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG  244 (334)
T ss_dssp             CTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET
T ss_pred             eCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC
Confidence            76543211 11111     11256889999999999998899999999763222  11110 11   112333 344457


Q ss_pred             CCE-EEEeeCCCeEEEeeCCCc
Q 021319          203 GRY-FAVGSADSLVSLWDISEM  223 (314)
Q Consensus       203 ~~~-l~t~~~dg~i~vwd~~~~  223 (314)
                      |+. +++...++.+.+.+.+..
T Consensus       245 G~vllV~~~~~~~~~l~S~DgW  266 (334)
T 2p9w_A          245 NESVLVGARAPYAISFRSWDNW  266 (334)
T ss_dssp             TEEEEEEEETTEEEEEECSSTT
T ss_pred             CEEEEEEcCCCCEEEEECCCCc
Confidence            777 555556666666665543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.09  E-value=0.1  Score=43.89  Aligned_cols=227  Identities=15%  Similarity=0.095  Sum_probs=121.5

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee---cCCCCEEEEEEcCC---CCCEEEEEeC---C--
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPK---HADLIATASG---D--   88 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~---~~~~l~s~~~---D--   88 (314)
                      -..-..++|.|+|.++++ ..++.|++++.+  .  ......+.   ........++++|+   ++.+.++-+.   +  
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~--G--~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPS--G--KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECSS--C--EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCC--C--ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            456789999999986555 455888888632  1  11111111   12345789999986   4445554442   3  


Q ss_pred             --CcEEEEeCCCC--cee------eeEEec--CceEEEEEccCCCEEEEEeCC-------------CcEEEEEccCC---
Q 021319           89 --KTVRLWDARSG--KCS------QQAELS--GENINITYKPDGTHIAVGNRD-------------DELTILDVRKF---  140 (314)
Q Consensus        89 --~~v~iwd~~~~--~~~------~~~~~~--~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~---  140 (314)
                        ..|..++....  ...      ......  .....+.|.|||.+.++.+..             +.|.-++....   
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~  182 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA  182 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence              56777776543  111      111111  112358899999866654321             34444443221   


Q ss_pred             ------eEeeeeccCcceeeEEecc-CCCeEEEEcCCc---eEEEEeCCC----------------CCceeeeeecccce
Q 021319          141 ------KPIHRRKFGYEVNEIAWNM-TGEMFFLTTGNG---TVEVLTYPS----------------LRPLDTVVAHTAGC  194 (314)
Q Consensus       141 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g---~~~~~~~~~----------------~~~~~~~~~~~~~i  194 (314)
                            ..+...- ......++|++ .+.++++-...+   .+.+.....                ..++..+......+
T Consensus       183 ~npf~~~~i~a~G-~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap  261 (354)
T 3a9g_A          183 DNPFPNSPIWSYG-HRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP  261 (354)
T ss_dssp             TSSSTTCCEEEEC-CSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred             CCCCCCCcEEEEc-cCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence                  0011100 11245788888 666666554432   243332111                01222221112357


Q ss_pred             EEEEEC-------CCCCEEEEeeCCCeEEEeeCCCc-EEE--EEee-ecccCeEEEEEccCCcEEEEec
Q 021319          195 YCIAID-------PMGRYFAVGSADSLVSLWDISEM-LCV--RTFT-KLEWPVRTISFSHTGDYIASAS  252 (314)
Q Consensus       195 ~~i~~~-------~~~~~l~t~~~dg~i~vwd~~~~-~~~--~~~~-~~~~~v~~~~~sp~~~~l~s~s  252 (314)
                      ..++|.       .+|+++++.-..+.|...++... ...  ..+. .....+..+++.|||.+.++..
T Consensus       262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            788883       56777777777778988888742 222  2222 2234678899999997766654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.05  E-value=0.11  Score=43.66  Aligned_cols=237  Identities=10%  Similarity=0.079  Sum_probs=120.6

Q ss_pred             ccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeE--EeecCCCCEEEEEEcCC---CCCEEEEEeC-----
Q 021319           19 HKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDI--ELRGHADSVDQLCWDPK---HADLIATASG-----   87 (314)
Q Consensus        19 H~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~---~~~~l~s~~~-----   87 (314)
                      --..-..++|.|+|. ++++ ...|.|++++.+......+...  ...........++++|+   ++.+.++-..     
T Consensus        16 ~l~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           16 KLDHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             EESSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCCCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            345678999999998 5554 4578888887431100000000  01112345688999985   4444444332     


Q ss_pred             --CCcEEEEeCCCC--cee--ee-EE-ec------CceEEEEEccCCCEEEEEeCC-------------CcEEEEEccCC
Q 021319           88 --DKTVRLWDARSG--KCS--QQ-AE-LS------GENINITYKPDGTHIAVGNRD-------------DELTILDVRKF  140 (314)
Q Consensus        88 --D~~v~iwd~~~~--~~~--~~-~~-~~------~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~  140 (314)
                        ...|..++...+  ...  .. +. ..      .....+.|.|||.+.++.+..             +.|.-++....
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence              235656665432  111  11 11 11      112358999999655554331             34555555421


Q ss_pred             eE------------eeeeccC-cceeeEEecc-CCCeEEEEcCC---ceEEEEeCCC-----------------------
Q 021319          141 KP------------IHRRKFG-YEVNEIAWNM-TGEMFFLTTGN---GTVEVLTYPS-----------------------  180 (314)
Q Consensus       141 ~~------------~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~---g~~~~~~~~~-----------------------  180 (314)
                      -+            ......+ .....++|.+ .+.++++-...   ..+.......                       
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence            00            0001111 2356788888 56555543331   1232211000                       


Q ss_pred             ------CCceeeeeecccceEEEEECC-------CCCEEEEeeCCCeEEEeeCCCcEEEEE--e-eecccCeEEEEEccC
Q 021319          181 ------LRPLDTVVAHTAGCYCIAIDP-------MGRYFAVGSADSLVSLWDISEMLCVRT--F-TKLEWPVRTISFSHT  244 (314)
Q Consensus       181 ------~~~~~~~~~~~~~i~~i~~~~-------~~~~l~t~~~dg~i~vwd~~~~~~~~~--~-~~~~~~v~~~~~sp~  244 (314)
                            ..++..+ .+...+..++|..       +|+++++.-..+.|...++..+.....  + ......+..+++.||
T Consensus       255 ~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd  333 (353)
T 2g8s_A          255 EIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD  333 (353)
T ss_dssp             SSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred             CCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence                  0011111 1223567788853       467777776778888888876544322  2 122236888999999


Q ss_pred             CcEEEEec-CCceE
Q 021319          245 GDYIASAS-EDLFI  257 (314)
Q Consensus       245 ~~~l~s~s-~d~~v  257 (314)
                      |.+.++.. .++.|
T Consensus       334 G~lyv~td~~~g~I  347 (353)
T 2g8s_A          334 GYLYVLTDESSGEL  347 (353)
T ss_dssp             SCEEEEECSTTEEE
T ss_pred             CcEEEEEeCCCCEE
Confidence            98666432 44543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.99  E-value=0.11  Score=42.39  Aligned_cols=182  Identities=14%  Similarity=0.049  Sum_probs=91.6

Q ss_pred             CCEEEEEeCC-----CcEEEEeCCCCc---eeeeEEecCc--eEEEEEccCCCEEEEEeCC-----CcEEEEEccCCeEe
Q 021319           79 ADLIATASGD-----KTVRLWDARSGK---CSQQAELSGE--NINITYKPDGTHIAVGNRD-----DELTILDVRKFKPI  143 (314)
Q Consensus        79 ~~~l~s~~~D-----~~v~iwd~~~~~---~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~  143 (314)
                      +.+++.|+.+     ..+.++|+.+..   ..........  ...++. .+++.++.|+.+     ..+.++|+.+.+..
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            4566677654     468899988776   4433222111  111222 266777777654     35788898776543


Q ss_pred             eeeccCc-ceeeEEeccCCCeEEEEcCC-----ceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCC---
Q 021319          144 HRRKFGY-EVNEIAWNMTGEMFFLTTGN-----GTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSAD---  212 (314)
Q Consensus       144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~d---  212 (314)
                      ....... .........++..+++++.+     ..+..|+....+-  +..+........++.+  ++++++.|+.+   
T Consensus       142 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~  219 (301)
T 2vpj_A          142 MLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTA  219 (301)
T ss_dssp             EEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSS
T ss_pred             ECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCc
Confidence            3211111 11111122356666666533     4566677544321  1111111111122333  56777888765   


Q ss_pred             --CeEEEeeCCCcEEEEE--eeecccCeEEEEEccCCcEEEEecCC-----ceEEEEECCCC
Q 021319          213 --SLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTG  265 (314)
Q Consensus       213 --g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~~  265 (314)
                        ..+.+||+.+.+-...  +.........  ...++++++.|+.+     ..+.++|..+.
T Consensus       220 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          220 HLSSVEAYNIRTDSWTTVTSMTTPRCYVGA--TVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEE--EEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             ccceEEEEeCCCCcEEECCCCCCcccceeE--EEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence              3589999987654322  1111111122  22367788888765     35677787654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.91  E-value=0.12  Score=41.95  Aligned_cols=215  Identities=13%  Similarity=0.061  Sum_probs=104.8

Q ss_pred             CcEEEEeCCCCceeeeEEecCc--eEEEEEccCCCEEEEEeCC-----CcEEEEEccCCe---Eeee--eccCcceeeEE
Q 021319           89 KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD-----DELTILDVRKFK---PIHR--RKFGYEVNEIA  156 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~---~~~~--~~~~~~~~~~~  156 (314)
                      ..+.++|+.+++..........  ...+ ...++..++.|+.+     ..+.++|+.+.+   ....  ......-..+ 
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~-  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVAS-VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA-  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEE-EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE-
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccE-EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE-
Confidence            3677888877764433222111  1112 22356777777754     358889987654   2221  1111111111 


Q ss_pred             eccCCCeEEEEcCC-----ceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCCC-----eEEEeeCCCcE
Q 021319          157 WNMTGEMFFLTTGN-----GTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEML  224 (314)
Q Consensus       157 ~~~~~~~~~~~~~~-----g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-----~i~vwd~~~~~  224 (314)
                      ...++..+++++.+     ..+.+|+....+-  +..+........++.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       109 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          109 TTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             EEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc
Confidence            12355666665532     3566777654321  1111111111122223  577777777653     58899987764


Q ss_pred             EEEEeeecccC-eEEEEEccCCcEEEEecCC-----ceEEEEECCCCCeEEE--Eec-cCccceeEEcCCCCeeEEEecC
Q 021319          225 CVRTFTKLEWP-VRTISFSHTGDYIASASED-----LFIDISNVHTGRTVHQ--IPC-RAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       225 ~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~~~~~~~--~~~-~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      -... .....+ ....+...++++++.|+.+     ..+.++|..+.+=...  ++. +..-..+.+  ++.+++.||.+
T Consensus       187 W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  263 (301)
T 2vpj_A          187 WTNV-TPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYD  263 (301)
T ss_dssp             EEEE-CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             EEeC-CCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcC
Confidence            4322 111111 1111222367888888764     4588899876532211  111 111122232  67788888866


Q ss_pred             CcccccccceEEeccccC
Q 021319          296 KNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~  313 (314)
                      ...   ....+.+|+++.
T Consensus       264 ~~~---~~~~v~~yd~~~  278 (301)
T 2vpj_A          264 GNS---LLSSIECYDPII  278 (301)
T ss_dssp             SSS---BEEEEEEEETTT
T ss_pred             CCc---ccccEEEEcCCC
Confidence            532   124566776643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.91  E-value=0.13  Score=41.99  Aligned_cols=183  Identities=14%  Similarity=0.133  Sum_probs=90.5

Q ss_pred             CCEEEEEeCC-----CcEEEEeCCCCceeeeEEecCc--eEEEEEccCCCEEEEEeCCC-----cEEEEEccCCeEeeee
Q 021319           79 ADLIATASGD-----KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHRR  146 (314)
Q Consensus        79 ~~~l~s~~~D-----~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~  146 (314)
                      +.+++.|+.+     ..+.++|..+.+..........  ...++. .+++.++.|+.++     .+.+||+.+.+.....
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  140 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA  140 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence            4566677654     3578889887765443222111  111222 2667777777654     4677888766543322


Q ss_pred             ccCcc-eeeEEeccCCCeEEEEcC-------CceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCCC---
Q 021319          147 KFGYE-VNEIAWNMTGEMFFLTTG-------NGTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADS---  213 (314)
Q Consensus       147 ~~~~~-~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg---  213 (314)
                      ..... ........++..+++++.       ...+..|+....+-  +..+........++.+  ++++++.|+.++   
T Consensus       141 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  218 (302)
T 2xn4_A          141 PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLV  218 (302)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSB
T ss_pred             CCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcc
Confidence            11111 111111235556666543       23466777644321  1111111111122233  577788887653   


Q ss_pred             --eEEEeeCCCcEEEEEeeecccC-eEEEEEccCCcEEEEecCCc-----eEEEEECCCC
Q 021319          214 --LVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASEDL-----FIDISNVHTG  265 (314)
Q Consensus       214 --~i~vwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~d~-----~v~v~~~~~~  265 (314)
                        .+.+||+.+.+-.. +.....+ ....+...++++++.|+.++     .+.++|..+.
T Consensus       219 ~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          219 RKSVEVYDPTTNAWRQ-VADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             CCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             cceEEEEeCCCCCEee-CCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence              58899988764332 2111111 11112223677888887653     3777777664

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.78  E-value=0.16  Score=41.38  Aligned_cols=224  Identities=10%  Similarity=0.031  Sum_probs=110.4

Q ss_pred             EEEEEeC--CCcEEEEeCCCCceeeeEEecCc--eEEEEEccCCCEEEEEeCC----CcEEEEEccCCeEeeeeccCc-c
Q 021319           81 LIATASG--DKTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGY-E  151 (314)
Q Consensus        81 ~l~s~~~--D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~-~  151 (314)
                      +++.|+.  ...+.++|..+++..........  ...+. ..++..++.|+.+    ..+.++|+.+.+......... .
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r   92 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV-FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR   92 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE-EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE-EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence            4445544  35788899888765433222111  11122 2366677777754    568888988765433222111 1


Q ss_pred             eeeEEeccCCCeEEEEcCC------ceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCC---------Ce
Q 021319          152 VNEIAWNMTGEMFFLTTGN------GTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSAD---------SL  214 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~d---------g~  214 (314)
                      ....+...++..+++++.+      ..+.+|+....+-  +..+......-.++.+  ++++++.|+.+         ..
T Consensus        93 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  170 (306)
T 3ii7_A           93 DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNS  170 (306)
T ss_dssp             BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCC
T ss_pred             cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccce
Confidence            1111122355666666543      3566777654321  1111111111122222  56777777642         34


Q ss_pred             EEEeeCCCcEEEEEeeecccC-eEEEEEccCCcEEEEecCC-----ceEEEEECCCCC--eEEEEec-cCccceeEEcCC
Q 021319          215 VSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASED-----LFIDISNVHTGR--TVHQIPC-RAAMNSVEWNPK  285 (314)
Q Consensus       215 i~vwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~~~--~~~~~~~-~~~i~~v~~~~~  285 (314)
                      +.+||+.+..-... .....+ ....+..-++++++.|+.+     ..+.++|..+.+  .+..++. +.....+.+  +
T Consensus       171 ~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~  247 (306)
T 3ii7_A          171 CEVYDPATETWTEL-CPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--G  247 (306)
T ss_dssp             EEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--T
T ss_pred             EEEeCCCCCeEEEC-CCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--C
Confidence            88999887643322 111111 1111122367778877754     357888887643  1111111 112223333  6


Q ss_pred             CCeeEEEecCCcccccccceEEeccccC
Q 021319          286 YNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       286 ~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +.+++.||.+...+   ...+.+|+.+.
T Consensus       248 ~~i~v~GG~~~~~~---~~~~~~yd~~~  272 (306)
T 3ii7_A          248 SIVYVLAGFQGVGR---LGHILEYNTET  272 (306)
T ss_dssp             TEEEEEECBCSSSB---CCEEEEEETTT
T ss_pred             CEEEEEeCcCCCee---eeeEEEEcCCC
Confidence            77888888765432   34677777654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.76  E-value=0.17  Score=41.30  Aligned_cols=182  Identities=12%  Similarity=0.049  Sum_probs=92.3

Q ss_pred             CCEEEEEeCC----CcEEEEeCCCCceeeeEEecCce--EEEEEccCCCEEEEEeCC------CcEEEEEccCCeEeeee
Q 021319           79 ADLIATASGD----KTVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRR  146 (314)
Q Consensus        79 ~~~l~s~~~D----~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~  146 (314)
                      +.+++.|+.+    ..+.++|+.+.+......+....  ..++ ..+++.++.|+.+      ..+.+||+.+.+.....
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            3566677654    56788898887654433222111  1122 2267777777765      45888998876543321


Q ss_pred             ccCcc-eeeEEeccCCCeEEEEcC---------CceEEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCC-
Q 021319          147 KFGYE-VNEIAWNMTGEMFFLTTG---------NGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS-  213 (314)
Q Consensus       147 ~~~~~-~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-  213 (314)
                      ..... ........++..+++++.         ...+..|+....+  .+..+......-.++.+  ++++++.|+.++ 
T Consensus       135 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~  212 (306)
T 3ii7_A          135 SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGL  212 (306)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETT
T ss_pred             CCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCC
Confidence            11111 111111235556666542         3446677765432  11111111111122223  567777777543 


Q ss_pred             ----eEEEeeCCCcEEEE--EeeecccCeEEEEEccCCcEEEEecCC-----ceEEEEECCCC
Q 021319          214 ----LVSLWDISEMLCVR--TFTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTG  265 (314)
Q Consensus       214 ----~i~vwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~~  265 (314)
                          .+.+||+.+.+-..  .+.........+.+  ++++++.|+.+     ..+.++|..+.
T Consensus       213 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          213 GGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence                58899987764322  11111111222222  67888888754     45788888764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.62  E-value=0.21  Score=40.61  Aligned_cols=216  Identities=16%  Similarity=0.084  Sum_probs=103.3

Q ss_pred             CcEEEEeCCCCceeeeEEecCc--eEEEEEccCCCEEEEEeCC-----CcEEEEEccCCeEeeeeccCc-ceeeEEeccC
Q 021319           89 KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRRKFGY-EVNEIAWNMT  160 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~  160 (314)
                      ..+..+|+.+.+......+...  ...++ ..++..++.|+.+     ..+.+||+.+.+......... .....+...+
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~  108 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLN  108 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEEC
Confidence            3567788877654332221111  11122 2266677777754     358888987765433221111 1111111235


Q ss_pred             CCeEEEEcCC-----ceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCC-------CeEEEeeCCCcEEE
Q 021319          161 GEMFFLTTGN-----GTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSAD-------SLVSLWDISEMLCV  226 (314)
Q Consensus       161 ~~~~~~~~~~-----g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~d-------g~i~vwd~~~~~~~  226 (314)
                      +..+++++.+     ..+..|+....+-  +..+........++.+  ++++++.|+.+       ..+.+||+.+..-.
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            6666766543     2455666543321  1111111111122222  56777777653       34889998776433


Q ss_pred             EE--eeecccCeEEEEEccCCcEEEEecCC-----ceEEEEECCCCCeEEEEec--cCccceeEEcCCCCeeEEEecCCc
Q 021319          227 RT--FTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       227 ~~--~~~~~~~v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~~~~~~~~~~--~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      ..  +.........+  ..++++++.|+.+     ..+.++|..+.+=. .+..  ...-...+...++.+++.||.+..
T Consensus       187 ~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~  263 (302)
T 2xn4_A          187 YIAEMSTRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADMNMCRRNAGVCAVNGLLYVVGGDDGS  263 (302)
T ss_dssp             EECCCSSCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             ECCCCccccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCCCCccccCeEEEECCEEEEECCcCCC
Confidence            22  11111111222  2367888888764     35888888765321 1211  011111111226778888887654


Q ss_pred             ccccccceEEeccccC
Q 021319          298 KYQADEGVFRIYGFEN  313 (314)
Q Consensus       298 ~~~~~~~~~~~~~~~~  313 (314)
                      ..   ...+.+|+.+.
T Consensus       264 ~~---~~~v~~yd~~~  276 (302)
T 2xn4_A          264 CN---LASVEYYNPTT  276 (302)
T ss_dssp             SB---CCCEEEEETTT
T ss_pred             cc---cccEEEEcCCC
Confidence            22   34566777653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.60  E-value=0.25  Score=42.35  Aligned_cols=104  Identities=8%  Similarity=0.128  Sum_probs=71.5

Q ss_pred             ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE------------EEEEeee------cccCeEEEEEccCC---cEEEEe
Q 021319          193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEML------------CVRTFTK------LEWPVRTISFSHTG---DYIASA  251 (314)
Q Consensus       193 ~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~------------~~~~~~~------~~~~v~~~~~sp~~---~~l~s~  251 (314)
                      .+..+..||+|++||..+.. .|.|-.+..+.            ..+.+.-      ...+|..+-|||-+   ..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            57789999999999988644 68888876221            1233332      24679999999975   589999


Q ss_pred             cCCceEEEEECCCCC--eEEEEe-------c---cCccceeEEcCCCCeeEEEe--cCCcc
Q 021319          252 SEDLFIDISNVHTGR--TVHQIP-------C---RAAMNSVEWNPKYNLLAYAG--DDKNK  298 (314)
Q Consensus       252 s~d~~v~v~~~~~~~--~~~~~~-------~---~~~i~~v~~~~~~~~la~~~--~d~~~  298 (314)
                      ..|+.|++||+....  +. .+.       .   ...|.+++|.+++-.|-...  +.+..
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDI  205 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDI  205 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence            999999999997532  22 221       1   13578999999776665544  44443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.55  E-value=0.006  Score=50.89  Aligned_cols=187  Identities=10%  Similarity=0.059  Sum_probs=102.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEec--CceEEEEE--ccCCCEEEEE--eCCCcEEEEEccCCeEeeeeccCccee
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAELS--GENINITY--KPDGTHIAVG--NRDDELTILDVRKFKPIHRRKFGYEVN  153 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~--~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~  153 (314)
                      .+++.++.||.|.-.|..+|+..-..+..  ...+...-  .+.+..++++  +.||.+..++..+.........+..+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47788999999999999999876665544  22222110  1112234443  589999999987764443332221111


Q ss_pred             --eEEec-----------cCCCeEEEEcCCceEEEEeCCCCCceeeeeeccc-c------eEEEEEC-----CCCCEEEE
Q 021319          154 --EIAWN-----------MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA-G------CYCIAID-----PMGRYFAV  208 (314)
Q Consensus       154 --~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~------i~~i~~~-----~~~~~l~t  208 (314)
                        .+...           ..+..++++..+|++..++..+++.+..+..... .      ..|....     -.+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence              01110           1455677888899999999988887766542211 0      0111111     12345666


Q ss_pred             eeCCCeEEEeeCCCcEEEEE-----eeecccC--eE-EEEEccCCcEEEEecCCceEEEEECCCCCeEE
Q 021319          209 GSADSLVSLWDISEMLCVRT-----FTKLEWP--VR-TISFSHTGDYIASASEDLFIDISNVHTGRTVH  269 (314)
Q Consensus       209 ~~~dg~i~vwd~~~~~~~~~-----~~~~~~~--v~-~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~  269 (314)
                      +..+..+.+.+ ++++ +-.     +......  +. .-..+.++.+ +.++.|+.|...|..+|+.+.
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            66666666666 3332 111     1100000  00 0001234666 447889999999999998876

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.25  E-value=0.48  Score=40.60  Aligned_cols=108  Identities=13%  Similarity=0.111  Sum_probs=72.2

Q ss_pred             ceeeEEeccCCCeEEEEcCCceEEEEeCCCCC-c---------e--eeeee------cccceEEEEECCCC---CEEEEe
Q 021319          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-P---------L--DTVVA------HTAGCYCIAIDPMG---RYFAVG  209 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~---------~--~~~~~------~~~~i~~i~~~~~~---~~l~t~  209 (314)
                      ++..+..+|.|.++++.+. ..+.+..++... .         +  +.+..      ...+|..+.|+|-+   ..|++=
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            5777899999999888754 478888876221 1         1  11221      14569999999964   589999


Q ss_pred             eCCCeEEEeeCCCcE-EEEEee---------ecccCeEEEEEccCCcEEEE--ecCCceEEE
Q 021319          210 SADSLVSLWDISEML-CVRTFT---------KLEWPVRTISFSHTGDYIAS--ASEDLFIDI  259 (314)
Q Consensus       210 ~~dg~i~vwd~~~~~-~~~~~~---------~~~~~v~~~~~sp~~~~l~s--~s~d~~v~v  259 (314)
                      ..|+.||+||+.... ....+.         .....|.+++|.+++-.|..  .+..|-|+-
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            999999999997521 111221         11246889999998765555  457776644

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.94  E-value=0.53  Score=38.36  Aligned_cols=226  Identities=12%  Similarity=0.059  Sum_probs=106.2

Q ss_pred             CCCCEEEEeeCC----CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC----C-----CcEEEEeC
Q 021319           30 CTGTKLASGSVD----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG----D-----KTVRLWDA   96 (314)
Q Consensus        30 ~~g~~l~s~~~D----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----D-----~~v~iwd~   96 (314)
                      -++..++.||.+    ..+.+||..+.......  .++. ...-.+++..  ++.+++.|+.    +     ..+.++|+
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~--~~p~-~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLA--DLQV-PRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECC--CCSS-CCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECC--CCCc-ccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECC
Confidence            356677777742    35777776543211111  1110 0000122222  2356666665    2     46788898


Q ss_pred             CCCceeeeEEecCc--eEEEEEccCCCEEEEEeCC-----CcEEEEEccCCeEeeeeccCcc-eeeEEeccCCCeEEEEc
Q 021319           97 RSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTT  168 (314)
Q Consensus        97 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  168 (314)
                      .+.+..........  ...++. -+++.++.|+.+     ..+.+||+.+.+.......... ........++..+++++
T Consensus        98 ~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG  176 (308)
T 1zgk_A           98 MTNQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG  176 (308)
T ss_dssp             TTTEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred             CCCeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeC
Confidence            87765433222111  111222 266777777643     3578889877654332211111 11111122556666655


Q ss_pred             CC-----ceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCC-----CeEEEeeCCCcEEEEE--eeeccc
Q 021319          169 GN-----GTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEMLCVRT--FTKLEW  234 (314)
Q Consensus       169 ~~-----g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~d-----g~i~vwd~~~~~~~~~--~~~~~~  234 (314)
                      .+     ..+..|+....+-  +..+........++.+  ++++++.|+.+     ..+.+||+.+.+-...  +.....
T Consensus       177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  254 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS  254 (308)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence            33     4566776543321  1111111111223333  57777888765     4589999887643321  111111


Q ss_pred             CeEEEEEccCCcEEEEecCC-----ceEEEEECCCC
Q 021319          235 PVRTISFSHTGDYIASASED-----LFIDISNVHTG  265 (314)
Q Consensus       235 ~v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~~  265 (314)
                      ....+.  -++++++.|+.+     ..+.++|..+.
T Consensus       255 ~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          255 ALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             SCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            112222  367777777754     34667776653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.91  E-value=0.63  Score=39.00  Aligned_cols=222  Identities=11%  Similarity=0.031  Sum_probs=121.9

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe------cCceEEEEEccC---CCEEEEEeC----C----
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL------SGENINITYKPD---GTHIAVGNR----D----  129 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~------~~~~~~~~~~~~---~~~l~~~~~----d----  129 (314)
                      .....++|.|++ .++ .+..++.|+++|. +++ .....+      ......+++.|+   +..|.++..    +    
T Consensus        29 ~~P~~ia~~pdG-~l~-V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           29 EVPWSIAPLGGG-RYL-VTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             SCEEEEEEEETT-EEE-EEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCeEEEEcCCC-eEE-EEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            446788999875 444 4566799999974 454 111111      234677999997   555555443    2    


Q ss_pred             CcEEEEEccCC-------eEeee-ecc--CcceeeEEeccCCCeEEEEcC-------------CceEEEEeCCCCC----
Q 021319          130 DELTILDVRKF-------KPIHR-RKF--GYEVNEIAWNMTGEMFFLTTG-------------NGTVEVLTYPSLR----  182 (314)
Q Consensus       130 ~~i~i~d~~~~-------~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~-------------~g~~~~~~~~~~~----  182 (314)
                      ..|..++....       +.+.. ...  ......++|.|++.++++...             .|.|..++....-    
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            45667765432       11111 111  123467899999987766432             2456555543220    


Q ss_pred             c---eeee-eecccceEEEEECC-CCCEEEEeeCCC---eEEEeeCCC--------c--------EEEEEeeecccCeEE
Q 021319          183 P---LDTV-VAHTAGCYCIAIDP-MGRYFAVGSADS---LVSLWDISE--------M--------LCVRTFTKLEWPVRT  238 (314)
Q Consensus       183 ~---~~~~-~~~~~~i~~i~~~~-~~~~l~t~~~dg---~i~vwd~~~--------~--------~~~~~~~~~~~~v~~  238 (314)
                      +   ...+ .++ ..+..++|+| +++++++-....   .|.+...-.        +        ..+..+.........
T Consensus       185 pf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G  263 (354)
T 3a9g_A          185 PFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG  263 (354)
T ss_dssp             SSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred             CCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence            0   1111 122 2467899999 676655433222   233322100        0        011122111234677


Q ss_pred             EEEc-------cCCcEEEEecCCceEEEEECCCC-CeE--EEEec--cCccceeEEcCCCCeeEEEe
Q 021319          239 ISFS-------HTGDYIASASEDLFIDISNVHTG-RTV--HQIPC--RAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       239 ~~~s-------p~~~~l~s~s~d~~v~v~~~~~~-~~~--~~~~~--~~~i~~v~~~~~~~~la~~~  293 (314)
                      ++|.       .+|.++++.-..+.|...++... +..  ..+..  ...+..+++.|++.++++..
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            8883       57888877777788888887643 332  22321  34789999999998776654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.86  E-value=1.5  Score=43.00  Aligned_cols=224  Identities=13%  Similarity=0.161  Sum_probs=121.2

Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee--eeEEecCceEEEEEccC------CCEEEEEeC-CCcEEEEEcc
Q 021319           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS--QQAELSGENINITYKPD------GTHIAVGNR-DDELTILDVR  138 (314)
Q Consensus        68 ~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~------~~~l~~~~~-d~~i~i~d~~  138 (314)
                      .|..++.+.  . .++.++ .+.+..+.+..+...  ....+..++.++++.|.      +.++++|.. |++++++++.
T Consensus       515 ~I~~As~n~--~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          515 NISVASCNS--S-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCEEEECS--S-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEeCC--C-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            455555543  2 344444 567777776655432  23345667778887653      478999997 9999999998


Q ss_pred             CCeEeeeeccCc--ceeeEEec--cCCCeEEEEcCCceEEEEeCCC--CCceee--eeecccceEEEEECCCCCEEEEee
Q 021319          139 KFKPIHRRKFGY--EVNEIAWN--MTGEMFFLTTGNGTVEVLTYPS--LRPLDT--VVAHTAGCYCIAIDPMGRYFAVGS  210 (314)
Q Consensus       139 ~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~--~~~~~~--~~~~~~~i~~i~~~~~~~~l~t~~  210 (314)
                      ..+.+.....+.  ...++...  ....+++++..+|.+..+.+..  ......  ...-..++.-..+...+..-+-+.
T Consensus       591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~  670 (1158)
T 3ei3_A          591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFAC  670 (1158)
T ss_dssp             TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEE
T ss_pred             CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEE
Confidence            877765544422  23333222  2335677888999887776543  221111  111122333333333333322223


Q ss_pred             CCCeEEEeeCCCcEEEEEeeecccCeE-EEEEccCC--cEEEEecCCceEEEEECCCC--CeEEEEeccCccceeEEcCC
Q 021319          211 ADSLVSLWDISEMLCVRTFTKLEWPVR-TISFSHTG--DYIASASEDLFIDISNVHTG--RTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       211 ~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~sp~~--~~l~s~s~d~~v~v~~~~~~--~~~~~~~~~~~i~~v~~~~~  285 (314)
                      .+....+|--........+. .+ ++. ...|+...  .-++.++ ++.++|..+.+-  -.+++++.+.+++.++++|.
T Consensus       671 s~rp~liy~~~~~l~~s~l~-~~-~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~  747 (1158)
T 3ei3_A          671 SDRPTVIYSSNHKLVFSNVN-LK-EVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEV  747 (1158)
T ss_dssp             SSSCEEEEESSSSEEEEEBS-SS-CCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGG
T ss_pred             CCCCEEEEEcCCceEEeccC-hH-HhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCC
Confidence            34444444433322222111 11 232 33465432  3344333 334777776543  24456778889999999999


Q ss_pred             CCeeEEEecCCcc
Q 021319          286 YNLLAYAGDDKNK  298 (314)
Q Consensus       286 ~~~la~~~~d~~~  298 (314)
                      .+.++.+..+.+.
T Consensus       748 ~~~~~v~~~~~~~  760 (1158)
T 3ei3_A          748 SQCFGVLSSRIEV  760 (1158)
T ss_dssp             GTEEEEEEEEEEE
T ss_pred             CCEEEEEEEeccc
Confidence            8887777655443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.69  E-value=0.7  Score=37.80  Aligned_cols=184  Identities=9%  Similarity=0.024  Sum_probs=93.4

Q ss_pred             CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEe--CCCc--EEEEEccCCeEeeeeccCcceeeEEeccCCCeE
Q 021319           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN--RDDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ..|+..++..++.....  ..  ....++++++.|+-..  .++.  |...++.......-....  .  ..+++.+..+
T Consensus        88 ~~Iy~i~~dg~~~~~l~--~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~--~--~~~~~~g~~i  159 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLD--PD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY--L--FTCNTSDRYF  159 (302)
T ss_dssp             EEEEEEETTSCCCEEEE--CS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC--C--CCSEEETTEE
T ss_pred             CeEEEEeCCCCcceEee--cC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC--c--eEeeEECCEE
Confidence            46777777766432221  11  1235677888888765  3344  444555432211111111  1  3456677777


Q ss_pred             EEEcC-CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC--CeEEEeeCCCcEEEEEeeecccCeEEEEE
Q 021319          165 FLTTG-NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD--SLVSLWDISEMLCVRTFTKLEWPVRTISF  241 (314)
Q Consensus       165 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~  241 (314)
                      +.... ...|...++........+.   +.. ...++|++.+|+-...+  ..|..-++.... .+.+..  ..+  ..|
T Consensus       160 y~t~~g~~~Iy~~~l~g~~~~~l~~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~  230 (302)
T 3s25_A          160 YYNNPKNGQLYRYDTASQSEALFYD---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHY  230 (302)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEEEC---SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEE
T ss_pred             EEEeCCCceEEEEECCCCCEEEEeC---CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceE
Confidence            76654 5677777765543322221   222 23466888887755433  356566665433 233322  223  348


Q ss_pred             ccCCcEEEEecC--CceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEe
Q 021319          242 SHTGDYIASASE--DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       242 sp~~~~l~s~s~--d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~  293 (314)
                      +|++++|.-++.  ...|..-++. |...+.+... .+.  ++++.+..|....
T Consensus       231 ~~~g~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~~-~~~--~i~i~~d~Iy~td  280 (302)
T 3s25_A          231 NVYGSLIFYQRGGDNPALCVVKND-GTGFKELAKG-EFC--NINVTSQYVYFTD  280 (302)
T ss_dssp             EEETTEEEEEECSSSCEEEEEETT-SCCCEEEEES-CEE--EEEECSSEEEEEE
T ss_pred             EECCCEEEEEECCCCcEEEEEECC-CCccEEeeCC-ccc--eEEEeCCEEEEEE
Confidence            889988876532  3455555553 3333333321 222  4555666665554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.59  E-value=0.75  Score=37.47  Aligned_cols=224  Identities=12%  Similarity=0.070  Sum_probs=107.7

Q ss_pred             CEEEEEeC----CCcEEEEeCCCCceeeeEEecCc--eEEEEEccCCCEEEEEeC----C-----CcEEEEEccCCeEee
Q 021319           80 DLIATASG----DKTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNR----D-----DELTILDVRKFKPIH  144 (314)
Q Consensus        80 ~~l~s~~~----D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~----d-----~~i~i~d~~~~~~~~  144 (314)
                      .+++.|+.    -..+.++|..+++..........  ...++ ..++..++.|+.    +     ..+.++|+.+.+...
T Consensus        26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~  104 (308)
T 1zgk_A           26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP  104 (308)
T ss_dssp             CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE
T ss_pred             EEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE
Confidence            45555552    23577888877665433221111  11222 225666667665    2     457888887765432


Q ss_pred             eeccCc-ceeeEEeccCCCeEEEEcCC-----ceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCCC---
Q 021319          145 RRKFGY-EVNEIAWNMTGEMFFLTTGN-----GTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADS---  213 (314)
Q Consensus       145 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg---  213 (314)
                      ...... .........++..+++++.+     ..+..|+....+-  +..+......-.++.+  ++++++.|+.++   
T Consensus       105 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  182 (308)
T 1zgk_A          105 CAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNR  182 (308)
T ss_dssp             CCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCB
T ss_pred             CCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCc
Confidence            211111 11111112255566665432     3566666543321  1111111111122233  577777777653   


Q ss_pred             --eEEEeeCCCcEEEEE--eeecccCeEEEEEccCCcEEEEecCC-----ceEEEEECCCCCeE--EEEec-cCccceeE
Q 021319          214 --LVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRTV--HQIPC-RAAMNSVE  281 (314)
Q Consensus       214 --~i~vwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~~~~~--~~~~~-~~~i~~v~  281 (314)
                        .+.+||+.+..-...  +......-..+.  -++++++.|+.+     ..+.++|..+.+=.  ..++. +..-..+.
T Consensus       183 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~  260 (308)
T 1zgk_A          183 LNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV  260 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             CceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE
Confidence              588899876643221  111111112222  267788888764     45888888764321  11111 11112222


Q ss_pred             EcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          282 WNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       282 ~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      .  ++.+++.||.+...+   ...+.+|+++.
T Consensus       261 ~--~~~i~v~GG~~~~~~---~~~v~~yd~~~  287 (308)
T 1zgk_A          261 H--QGRIYVLGGYDGHTF---LDSVECYDPDT  287 (308)
T ss_dssp             E--TTEEEEECCBCSSCB---CCEEEEEETTT
T ss_pred             E--CCEEEEEcCcCCCcc---cceEEEEcCCC
Confidence            2  677888888765432   34677777754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.43  E-value=0.96  Score=37.65  Aligned_cols=235  Identities=9%  Similarity=-0.015  Sum_probs=107.7

Q ss_pred             CCCEEEEeeCC-CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC-C---------CcEEEEeCCCC
Q 021319           31 TGTKLASGSVD-QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-D---------KTVRLWDARSG   99 (314)
Q Consensus        31 ~g~~l~s~~~D-~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-D---------~~v~iwd~~~~   99 (314)
                      ++..++.||.+ ..+.++|..+....+.....++.....-.+++.. + +.+++.|+. +         ..+.++|+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-D-GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-T-TEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-C-CEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            66777777643 4677777653222222111111111111122222 2 356666665 2         46788998887


Q ss_pred             ceeeeEEec-C--ceEEEEEccCCCEEEEEeCC---------------------------------------CcEEEEEc
Q 021319          100 KCSQQAELS-G--ENINITYKPDGTHIAVGNRD---------------------------------------DELTILDV  137 (314)
Q Consensus       100 ~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~d---------------------------------------~~i~i~d~  137 (314)
                      +........ .  ....+.. .+++.++.|+.+                                       ..+.+||+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            654432222 1  1122222 577788888764                                       46889998


Q ss_pred             cCCeEeeeeccCc--ceeeEEeccCCCeEEEEcC------CceEEEEeCCCCCc----eeeeeecccceEEEEECCCCCE
Q 021319          138 RKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTG------NGTVEVLTYPSLRP----LDTVVAHTAGCYCIAIDPMGRY  205 (314)
Q Consensus       138 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~----~~~~~~~~~~i~~i~~~~~~~~  205 (314)
                      .+.+.........  .........++..+++++.      ...+..|++.....    +..+........+.+...++++
T Consensus       176 ~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i  255 (357)
T 2uvk_A          176 STQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL  255 (357)
T ss_dssp             TTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEE
T ss_pred             CCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEE
Confidence            8765433222211  1101122234556666542      23455565521111    1111000011111122235677


Q ss_pred             EEEeeCC----------------------CeEEEeeCCCcE--EEEEeeecccCeEEEEEccCCcEEEEecCCc------
Q 021319          206 FAVGSAD----------------------SLVSLWDISEML--CVRTFTKLEWPVRTISFSHTGDYIASASEDL------  255 (314)
Q Consensus       206 l~t~~~d----------------------g~i~vwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~------  255 (314)
                      ++.|+.+                      ..+.+||+.+.+  .+..+......  ..+...++++++.|+.+.      
T Consensus       256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~  333 (357)
T 2uvk_A          256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVT  333 (357)
T ss_dssp             EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEE
T ss_pred             EEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEee
Confidence            7777732                      247788887543  33332222111  122335788888888652      


Q ss_pred             eEEEEECCCCCeEEE
Q 021319          256 FIDISNVHTGRTVHQ  270 (314)
Q Consensus       256 ~v~v~~~~~~~~~~~  270 (314)
                      .+.+.++.+++.+..
T Consensus       334 ~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          334 DSVLITVKDNKVTVQ  348 (357)
T ss_dssp             EEEEEEC-CCSCEEE
T ss_pred             eEEEEEEcCcEeEee
Confidence            244457766665543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.34  E-value=0.72  Score=35.73  Aligned_cols=99  Identities=13%  Similarity=0.106  Sum_probs=60.2

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc--------eeeEEeccCCCeEEEEcCCceEEEEeCCCCC
Q 021319          111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--------VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR  182 (314)
Q Consensus       111 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  182 (314)
                      ...++|+|+|.+.++  .++.+.-.+..+.+...-......        -..+.+.+++.++++  .+|.+..++-++..
T Consensus        43 ~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~  118 (236)
T 1tl2_A           43 FKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD  118 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred             ceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence            447999999987777  666666655543111100001111        257788999999888  55888877654322


Q ss_pred             cee-----eeee--cccceEEEEECCCCCEEEEeeCCCeE
Q 021319          183 PLD-----TVVA--HTAGCYCIAIDPMGRYFAVGSADSLV  215 (314)
Q Consensus       183 ~~~-----~~~~--~~~~i~~i~~~~~~~~l~t~~~dg~i  215 (314)
                      .-.     ...+  --..+..+.++|+|.+.|+.  |+.+
T Consensus       119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            111     1111  11457899999999988877  7664

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.05  E-value=1.2  Score=36.44  Aligned_cols=209  Identities=11%  Similarity=0.068  Sum_probs=98.0

Q ss_pred             EEEEeeCCCcEEEeecCCCCCCceeeEEeecC-CCCEEEEEEcCCCCCEEEEEeC-----C------CcEEEEeCCCCce
Q 021319           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASG-----D------KTVRLWDARSGKC  101 (314)
Q Consensus        34 ~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~-----D------~~v~iwd~~~~~~  101 (314)
                      +++.|+  ..+.+||..+..  +.. ..++.. ...-.+++. . ++.+++.|+.     .      ..+..+|..+++.
T Consensus         7 l~~~GG--~~~~~yd~~~~~--W~~-~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   79 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANE--CYC-ASLSSQVPKNHVSLVT-K-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW   79 (315)
T ss_dssp             EEEEET--TEEEEEETTTTE--EEE-EECCCCSCSSEEEEEC-T-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred             EEEEcC--CceEEECCCCCe--Eec-CCCCCCCCccceEEEE-E-CCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence            344555  567888876532  221 222211 112222332 2 3467777773     1      1267789887765


Q ss_pred             eeeEEecCceE--EEEEccCCCEEEEEeCC--------CcEEEEEccCCeEeeeeccCc-ceeeEEeccCCCeEEEEcC-
Q 021319          102 SQQAELSGENI--NITYKPDGTHIAVGNRD--------DELTILDVRKFKPIHRRKFGY-EVNEIAWNMTGEMFFLTTG-  169 (314)
Q Consensus       102 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  169 (314)
                      ...........  .++. -+++.++.|+.+        ..+.++|+.+.+......... .....+...++..+++++. 
T Consensus        80 ~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  158 (315)
T 4asc_A           80 LGMPPLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKG  158 (315)
T ss_dssp             EECCCBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             EECCCCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCC
Confidence            43322221111  1222 256666777642        358889988765432211111 1111122245566666654 


Q ss_pred             -----CceEEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCC-----eEEEeeCCCcEEEEE--eeecccC
Q 021319          170 -----NGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEMLCVRT--FTKLEWP  235 (314)
Q Consensus       170 -----~g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~--~~~~~~~  235 (314)
                           ...+..|+....+  .+..+........++.+  ++++++.|+.++     .+.+||+.+.+-...  +......
T Consensus       159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~  236 (315)
T 4asc_A          159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS  236 (315)
T ss_dssp             TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS
T ss_pred             CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc
Confidence                 1456777765432  11111111111122233  567777777654     488899877643322  1111111


Q ss_pred             eEEEEEccCCcEEEEecCC
Q 021319          236 VRTISFSHTGDYIASASED  254 (314)
Q Consensus       236 v~~~~~sp~~~~l~s~s~d  254 (314)
                      ...+  .-++++++.|+.+
T Consensus       237 ~~~~--~~~~~l~v~GG~~  253 (315)
T 4asc_A          237 LSLV--SLVGTLYAIGGFA  253 (315)
T ss_dssp             CEEE--EETTEEEEEEEEE
T ss_pred             eeEE--EECCEEEEECCcc
Confidence            1222  2366777777754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.03  E-value=1.6  Score=37.98  Aligned_cols=102  Identities=8%  Similarity=0.168  Sum_probs=58.6

Q ss_pred             ceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc--eeeee------ecccceEEEEECCC---CCEEEEeeC--------
Q 021319          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP--LDTVV------AHTAGCYCIAIDPM---GRYFAVGSA--------  211 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~------~~~~~i~~i~~~~~---~~~l~t~~~--------  211 (314)
                      ....++|.|++.++++-...+.|.+++....+.  +..+.      ........|+++|+   +..|.....        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            456788999998777766556788876543321  11111      02356789999995   444443332        


Q ss_pred             -----CCeEEEeeCCCc-------EEE-EEeee-cccCeEEEEEccCCcEEEEec
Q 021319          212 -----DSLVSLWDISEM-------LCV-RTFTK-LEWPVRTISFSHTGDYIASAS  252 (314)
Q Consensus       212 -----dg~i~vwd~~~~-------~~~-~~~~~-~~~~v~~~~~sp~~~~l~s~s  252 (314)
                           ...|.-++....       +.+ ..+.. .......|+|.|||.+.++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                 234555554321       111 11221 123478899999998777654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.94  E-value=0.97  Score=35.02  Aligned_cols=140  Identities=11%  Similarity=0.020  Sum_probs=80.5

Q ss_pred             ceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccc--------eEEEEECCCCCEEEEeeCCCeEEEeeCCC
Q 021319          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG--------CYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------i~~i~~~~~~~~l~t~~~dg~i~vwd~~~  222 (314)
                      ....++++|++.++++  .+|.++..+..+.... ...+-...        -.++.|+|+|.+.++  .||.|.-++-.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5668999999998887  7777766664332211 11111112        368899999998887  569887777532


Q ss_pred             cEE------EEEeeecc-cCeEEEEEccCCcEEEEecCCceEEEEECCCCC------eEEEEec-cCc-cceeEEcCCCC
Q 021319          223 MLC------VRTFTKLE-WPVRTISFSHTGDYIASASEDLFIDISNVHTGR------TVHQIPC-RAA-MNSVEWNPKYN  287 (314)
Q Consensus       223 ~~~------~~~~~~~~-~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~------~~~~~~~-~~~-i~~v~~~~~~~  287 (314)
                      ...      -..+.... ..+..|.|.|+|.+-|..  |+.+.=....++.      ....+.. ... -+-+.|.|++.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            100      01111111 257889999999988877  7664323222211      0111211 111 23367999988


Q ss_pred             eeEEEecCCccc
Q 021319          288 LLAYAGDDKNKY  299 (314)
Q Consensus       288 ~la~~~~d~~~~  299 (314)
                      +.+..  ++.+|
T Consensus       195 l~~v~--~g~~Y  204 (236)
T 1tl2_A          195 LFGVQ--GGKFY  204 (236)
T ss_dssp             EEEEE--TTEEE
T ss_pred             EEEEe--CCeEE
Confidence            87765  55554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.76  E-value=1.1  Score=39.07  Aligned_cols=104  Identities=10%  Similarity=0.033  Sum_probs=61.2

Q ss_pred             cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE--EEEeee------cccCeEEEEEccC----CcEEEEecC------
Q 021319          192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTK------LEWPVRTISFSHT----GDYIASASE------  253 (314)
Q Consensus       192 ~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~------~~~~v~~~~~sp~----~~~l~s~s~------  253 (314)
                      .....|+|.|+|+++++--..+.|++++..++..  +..+..      .......|+|+|+    +.+.++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            4578999999999877654445788887654432  222221      1234668999995    444444332      


Q ss_pred             ------CceEEEEECCCC--C-----eEE-EEecc--CccceeEEcCCCCeeEEEecC
Q 021319          254 ------DLFIDISNVHTG--R-----TVH-QIPCR--AAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       254 ------d~~v~v~~~~~~--~-----~~~-~~~~~--~~i~~v~~~~~~~~la~~~~d  295 (314)
                            ...|.-++...+  +     .+. .++..  -....++|.|++.+.++.|+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~  164 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ  164 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence                  234544544221  1     111 12221  136799999999988887754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.70  E-value=1.6  Score=36.45  Aligned_cols=222  Identities=13%  Similarity=0.081  Sum_probs=117.3

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeee---E---E--ecCceEEEEEccC---CCEEEEEeC-------
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ---A---E--LSGENINITYKPD---GTHIAVGNR-------  128 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~---~---~--~~~~~~~~~~~~~---~~~l~~~~~-------  128 (314)
                      .....++|.|++..++ .+...+.|++++.. +.....   .   .  .......++++|+   +..|.+...       
T Consensus        18 ~~P~~i~~~pdG~~l~-V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGML-ITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEE-EEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEE-EEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3467899999753255 45567999999853 332111   1   0  1223467899996   455554432       


Q ss_pred             -CCcEEEEEccCC-------eEeee-ec----cCcceeeEEeccCCCeEEEEcC-------------CceEEEEeCCCCC
Q 021319          129 -DDELTILDVRKF-------KPIHR-RK----FGYEVNEIAWNMTGEMFFLTTG-------------NGTVEVLTYPSLR  182 (314)
Q Consensus       129 -d~~i~i~d~~~~-------~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~-------------~g~~~~~~~~~~~  182 (314)
                       ...|..+++...       +.+.. ..    .......++|.|++.++++.+.             .|.|..++....-
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             124555555321       11111 11    0122457999999976666543             2466666654321


Q ss_pred             ------------ceeeee-ecccceEEEEECC-CCCEEEEeeC-CCeEEEeeCCCcE-----------------------
Q 021319          183 ------------PLDTVV-AHTAGCYCIAIDP-MGRYFAVGSA-DSLVSLWDISEML-----------------------  224 (314)
Q Consensus       183 ------------~~~~~~-~~~~~i~~i~~~~-~~~~l~t~~~-dg~i~vwd~~~~~-----------------------  224 (314)
                                  ....+. ++ ..+..++|+| +++++++-.. ++.=.|.-+..+.                       
T Consensus       176 p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                        111111 22 3478899999 6665553221 1111221111110                       


Q ss_pred             --------EEEEeeecccCeEEEEEcc-------CCcEEEEecCCceEEEEECCCCCeEEEEe----ccCccceeEEcCC
Q 021319          225 --------CVRTFTKLEWPVRTISFSH-------TGDYIASASEDLFIDISNVHTGRTVHQIP----CRAAMNSVEWNPK  285 (314)
Q Consensus       225 --------~~~~~~~~~~~v~~~~~sp-------~~~~l~s~s~d~~v~v~~~~~~~~~~~~~----~~~~i~~v~~~~~  285 (314)
                              .+..+. +......+.|..       +|.++++.-..+.|...++..++......    ....+..|++.|+
T Consensus       255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd  333 (353)
T 2g8s_A          255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD  333 (353)
T ss_dssp             SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred             CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence                    011111 122456677753       57777777777888877776654443321    1247889999999


Q ss_pred             CCeeEEE
Q 021319          286 YNLLAYA  292 (314)
Q Consensus       286 ~~~la~~  292 (314)
                      |.++++.
T Consensus       334 G~lyv~t  340 (353)
T 2g8s_A          334 GYLYVLT  340 (353)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEE
Confidence            9876643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.66  E-value=1.5  Score=35.79  Aligned_cols=225  Identities=12%  Similarity=0.104  Sum_probs=107.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeEEec---CceEEEEEccCCCEEEEEeC-----C------CcEEEEEccCCeEeeee
Q 021319           81 LIATASGDKTVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNR-----D------DELTILDVRKFKPIHRR  146 (314)
Q Consensus        81 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-----d------~~i~i~d~~~~~~~~~~  146 (314)
                      +++.|+  ..+..||..+++... ....   ..........+++.++.|+.     .      ..+.++|+.+.+.....
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            344454  578899998887543 2221   11222333457778888873     1      12677888776543221


Q ss_pred             ccCcc-eeeEEeccCCCeEEEEcCC--------ceEEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeC-C--
Q 021319          147 KFGYE-VNEIAWNMTGEMFFLTTGN--------GTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSA-D--  212 (314)
Q Consensus       147 ~~~~~-~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-d--  212 (314)
                      ....+ ........++..+++++.+        ..+..|+....+  .+..+......-.++.  .++++++.|+. +  
T Consensus        84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred             CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence            11111 1111112245556665521        346667664432  1111111111112222  35677777776 2  


Q ss_pred             ---CeEEEeeCCCcEEEEEeeecccC-eEEEEEccCCcEEEEecCCc-----eEEEEECCCCCeEE--EEec-cCcccee
Q 021319          213 ---SLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASEDL-----FIDISNVHTGRTVH--QIPC-RAAMNSV  280 (314)
Q Consensus       213 ---g~i~vwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~d~-----~v~v~~~~~~~~~~--~~~~-~~~i~~v  280 (314)
                         ..+.+||..+..-.. +.....+ ....+..-++++++.|+.++     .+.++|..+.+=..  .++. +..-..+
T Consensus       162 ~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  240 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKE-LAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV  240 (315)
T ss_dssp             CBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             cccceEEEEeCCCCeEEE-CCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence               358899987764322 1111111 11112223678888887653     47888887653211  1111 1111222


Q ss_pred             EEcCCCCeeEEEecCCccc------ccccceEEeccccC
Q 021319          281 EWNPKYNLLAYAGDDKNKY------QADEGVFRIYGFEN  313 (314)
Q Consensus       281 ~~~~~~~~la~~~~d~~~~------~~~~~~~~~~~~~~  313 (314)
                      .+  ++.+++.||.+....      ......+.+|+++.
T Consensus       241 ~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  277 (315)
T 4asc_A          241 SL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEE  277 (315)
T ss_dssp             EE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred             EE--CCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence            33  567888888753210      01224566777653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.84  E-value=4  Score=37.64  Aligned_cols=188  Identities=9%  Similarity=0.053  Sum_probs=96.9

Q ss_pred             CCEEEEEeCC----CcEEEEeCCCCceeeeE-E-----ecC--ceEEEEEcc-CCCEEEEEeCCC------cEEEEEccC
Q 021319           79 ADLIATASGD----KTVRLWDARSGKCSQQA-E-----LSG--ENINITYKP-DGTHIAVGNRDD------ELTILDVRK  139 (314)
Q Consensus        79 ~~~l~s~~~D----~~v~iwd~~~~~~~~~~-~-----~~~--~~~~~~~~~-~~~~l~~~~~d~------~i~i~d~~~  139 (314)
                      +.+++.||.+    ..+.++|..+++..... .     ...  ...+++..+ +++.++.|+.++      .+.+||+.+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            4567777653    45778888877654433 2     111  112233333 777778877543      577888887


Q ss_pred             CeEeeeeccC--cceeeEEeccCCCeEEEEcCCc--eEEEEeCCCCCc--eee---eeecccceEEEEECCC-CCEEEEe
Q 021319          140 FKPIHRRKFG--YEVNEIAWNMTGEMFFLTTGNG--TVEVLTYPSLRP--LDT---VVAHTAGCYCIAIDPM-GRYFAVG  209 (314)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~--~~~---~~~~~~~i~~i~~~~~-~~~l~t~  209 (314)
                      .+........  ..-...+...++..+++++.++  .+.+|+....+-  +..   .........++.++.+ +++++.|
T Consensus       478 ~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~G  557 (695)
T 2zwa_A          478 REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILG  557 (695)
T ss_dssp             TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEEC
T ss_pred             CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEEC
Confidence            5543322111  1112222223677777776443  577777654321  110   1111111233555554 6777778


Q ss_pred             eC--C-----CeEEEeeCCCcEE-----EEEeee---cccCeEEEEEccCCcEEEEecCC--------ceEEEEECCCCC
Q 021319          210 SA--D-----SLVSLWDISEMLC-----VRTFTK---LEWPVRTISFSHTGDYIASASED--------LFIDISNVHTGR  266 (314)
Q Consensus       210 ~~--d-----g~i~vwd~~~~~~-----~~~~~~---~~~~v~~~~~sp~~~~l~s~s~d--------~~v~v~~~~~~~  266 (314)
                      +.  +     ..+..||+.+..-     -..+..   ....-.++....++++++.|+.+        ..+.++|..+.+
T Consensus       558 G~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          558 GGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             CBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             CcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            76  2     3588999876651     112211   11111122233347888888743        458889987754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.81  E-value=4  Score=37.65  Aligned_cols=195  Identities=9%  Similarity=0.051  Sum_probs=97.3

Q ss_pred             cCCCEEEEEeCC----CcEEEEEccCCeEeeee-c-------cCcceeeEEecc-CCCeEEEEcCC------ceEEEEeC
Q 021319          118 PDGTHIAVGNRD----DELTILDVRKFKPIHRR-K-------FGYEVNEIAWNM-TGEMFFLTTGN------GTVEVLTY  178 (314)
Q Consensus       118 ~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~-~-------~~~~~~~~~~~~-~~~~~~~~~~~------g~~~~~~~  178 (314)
                      .++..++.|+.+    ..+.+||+.+.+..... .       ....-..++... ++..+++|+.+      ..+.+|+.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456667777643    45788888765443222 1       111112222222 66666666532      34566665


Q ss_pred             CCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCC--eEEEeeCCCcEEEEEee-----ecccCeEEEEEccC-CcEE
Q 021319          179 PSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS--LVSLWDISEMLCVRTFT-----KLEWPVRTISFSHT-GDYI  248 (314)
Q Consensus       179 ~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~sp~-~~~l  248 (314)
                      ...+  .+..+..-.. -.+++.-.++++++.|+.++  .+.+||..+..-...-.     .....-.++.+..+ ++++
T Consensus       476 ~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            4421  1111111011 11233324788888888765  68999998765332211     01111233555555 7788


Q ss_pred             EEecC--C-----ceEEEEECCCCCe-----EEEEec---cCccc-eeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          249 ASASE--D-----LFIDISNVHTGRT-----VHQIPC---RAAMN-SVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       249 ~s~s~--d-----~~v~v~~~~~~~~-----~~~~~~---~~~i~-~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +.|+.  +     ..+.+||..+.+-     -..+..   ..... ++....++.+++.||.+...-......+.+|+++
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            88875  2     3588899887661     112211   11111 2222233778888886543211224567777765


Q ss_pred             C
Q 021319          313 N  313 (314)
Q Consensus       313 ~  313 (314)
                      .
T Consensus       635 t  635 (695)
T 2zwa_A          635 S  635 (695)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.60  E-value=2.8  Score=34.99  Aligned_cols=236  Identities=12%  Similarity=0.061  Sum_probs=122.4

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeE-Ee----ecCCCCEEEEEEcCC---CCCEEEEE--
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-EL----RGHADSVDQLCWDPK---HADLIATA--   85 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~-~~----~~h~~~v~~l~~~~~---~~~~l~s~--   85 (314)
                      +..--..-..++|.|||.++++--..|.|++++.+..   ....+ .+    .........++++|+   ++.+.++-  
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g---~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG---RKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC---cEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            3334456789999999998888766888888864321   11111 11    123456789999985   33333332  


Q ss_pred             eCCCcEEEEeCCCC-----ce-----ee-eEEec--CceEEEEEccCCCEEEEEeC-------------CCcEEEEEccC
Q 021319           86 SGDKTVRLWDARSG-----KC-----SQ-QAELS--GENINITYKPDGTHIAVGNR-------------DDELTILDVRK  139 (314)
Q Consensus        86 ~~D~~v~iwd~~~~-----~~-----~~-~~~~~--~~~~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~  139 (314)
                      ..+..|.-|....+     ..     +. .....  ...-.+.|.|||.+.++.+.             .+.|.-++...
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence            24556666655442     11     11 11111  11234889999987766442             24444444432


Q ss_pred             CeE-------eeeeccC-cceeeEEeccCCCeEEEEcCC---ceEEEEeCC--------C--------CCceeeeeeccc
Q 021319          140 FKP-------IHRRKFG-YEVNEIAWNMTGEMFFLTTGN---GTVEVLTYP--------S--------LRPLDTVVAHTA  192 (314)
Q Consensus       140 ~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~--------~--------~~~~~~~~~~~~  192 (314)
                      .-+       ...+..+ .....++|++++.++++-...   ..+......        .        ..++..+..+..
T Consensus       184 ~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~  263 (347)
T 3das_A          184 EPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA  263 (347)
T ss_dssp             SBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred             CccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence            100       0001111 234568899987776665432   223332110        0        012222222223


Q ss_pred             ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE----EEEeeecccCeEEEEEccCCcEEEEe-cCCc
Q 021319          193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC----VRTFTKLEWPVRTISFSHTGDYIASA-SEDL  255 (314)
Q Consensus       193 ~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~s~-s~d~  255 (314)
                      ....++|. ++.++...-..+.|....+.....    ...+.+....+..|+..|||.++++- ..||
T Consensus       264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~~~g  330 (347)
T 3das_A          264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSNTDG  330 (347)
T ss_dssp             CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECTTSS
T ss_pred             CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcCCCC
Confidence            56677776 466666665566666666654432    12222333568889999999866654 3443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.55  E-value=3.3  Score=35.72  Aligned_cols=219  Identities=11%  Similarity=0.142  Sum_probs=129.6

Q ss_pred             CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCC
Q 021319           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG  120 (314)
Q Consensus        41 D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  120 (314)
                      +.+|.|-|+.....  .......     -.+...+|.. ++++--. ..++.|+|+.+........+....+-..|-.+.
T Consensus        47 ~~~vvIiDl~~~~~--~~rrpi~-----AdsAIMnP~~-~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~  117 (494)
T 1bpo_A           47 QAQVVIIDMNDPSN--PIRRPIS-----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN  117 (494)
T ss_dssp             CCEEEEEETTSTTS--CEEEECC-----CSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT
T ss_pred             CCeEEEEECCCCCc--ceecccc-----cceeeeCCCC-cEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC
Confidence            34677777765332  1111111     2345678874 5665544 689999999999988888887877777776554


Q ss_pred             CEEEEEeCCCcEEEEEccC-CeEeeeec-----cCcceeeEEeccCCCeEEEEc---C----CceEEEEeCCCCCceeee
Q 021319          121 THIAVGNRDDELTILDVRK-FKPIHRRK-----FGYEVNEIAWNMTGEMFFLTT---G----NGTVEVLTYPSLRPLDTV  187 (314)
Q Consensus       121 ~~l~~~~~d~~i~i~d~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~----~g~~~~~~~~~~~~~~~~  187 (314)
                       .|+..+ +..+.-|++.. ..|++-..     .+.++....-+++.+.++..+   .    .|.+.+|..+.. ..+.+
T Consensus       118 -~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~i  194 (494)
T 1bpo_A          118 -TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPI  194 (494)
T ss_dssp             -EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEE
T ss_pred             -eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchh
Confidence             444443 35788899853 23322211     234555555667777665432   1    256666665433 23445


Q ss_pred             eecccceEEEEECCC---CCEEEEeeCC---CeEEEeeCCCc--------E-EEEEeeec---ccCeEEEEEccCCcEEE
Q 021319          188 VAHTAGCYCIAIDPM---GRYFAVGSAD---SLVSLWDISEM--------L-CVRTFTKL---EWPVRTISFSHTGDYIA  249 (314)
Q Consensus       188 ~~~~~~i~~i~~~~~---~~~l~t~~~d---g~i~vwd~~~~--------~-~~~~~~~~---~~~v~~~~~sp~~~~l~  249 (314)
                      .+|...-..+.+..+   .+.++-+.+.   +.+++.++...        + .+..+...   .+-.-++..|+....+.
T Consensus       195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy  274 (494)
T 1bpo_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (494)
T ss_dssp             CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred             eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence            666554433333221   1234444332   68888888432        1 11111111   12245578889889999


Q ss_pred             EecCCceEEEEECCCCCeEEEE
Q 021319          250 SASEDLFIDISNVHTGRTVHQI  271 (314)
Q Consensus       250 s~s~d~~v~v~~~~~~~~~~~~  271 (314)
                      .-+.-|.++++|+.++..+..-
T Consensus       275 viTK~G~i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          275 LITKYGYIHLYDLETGTCIYMN  296 (494)
T ss_dssp             EEETTSEEEEEETTTCCEEEEE
T ss_pred             EEecCceEEEEecccceeeeee
Confidence            9999999999999999988654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.45  E-value=2.9  Score=34.69  Aligned_cols=227  Identities=9%  Similarity=0.043  Sum_probs=104.6

Q ss_pred             CEEEEEeC-CCcEEEEeCCC--CceeeeEEec-Cc--eEEEEEccCCCEEEEEeC-C---------CcEEEEEccCCeEe
Q 021319           80 DLIATASG-DKTVRLWDARS--GKCSQQAELS-GE--NINITYKPDGTHIAVGNR-D---------DELTILDVRKFKPI  143 (314)
Q Consensus        80 ~~l~s~~~-D~~v~iwd~~~--~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~~-d---------~~i~i~d~~~~~~~  143 (314)
                      .+++.|+. ...+.++|...  .+......+. ..  ..+++ .-++++++.|+. +         ..+.+||+.+.+..
T Consensus        21 ~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~   99 (357)
T 2uvk_A           21 TVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSA-FIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV   99 (357)
T ss_dssp             EEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEE-EETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred             EEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEE-EECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence            45555543 34677888763  3333222222 11  11122 225667777765 2         46888998876543


Q ss_pred             eeeccC-c-ceeeEEeccCCCeEEEEcCC---------------------------------------ceEEEEeCCCCC
Q 021319          144 HRRKFG-Y-EVNEIAWNMTGEMFFLTTGN---------------------------------------GTVEVLTYPSLR  182 (314)
Q Consensus       144 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~---------------------------------------g~~~~~~~~~~~  182 (314)
                      ...... . .....+...++..+++++.+                                       ..+.+|+....+
T Consensus       100 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~  179 (357)
T 2uvk_A          100 KLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ  179 (357)
T ss_dssp             ECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE
T ss_pred             ECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCc
Confidence            322111 1 11111222567777777654                                       467777765432


Q ss_pred             --ceeeeeecccceEEEEECCCCCEEEEeeCC------CeEEEeeC--CCcEEEEEeeeccc---CeEEEEEccCCcEEE
Q 021319          183 --PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD------SLVSLWDI--SEMLCVRTFTKLEW---PVRTISFSHTGDYIA  249 (314)
Q Consensus       183 --~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d------g~i~vwd~--~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~  249 (314)
                        .+..+..-...-.+++. .++++++.|+.+      ..+..||+  .+..-. .+.....   .....+...++++++
T Consensus       180 W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~iyv  257 (357)
T 2uvk_A          180 WSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN-KLAPVSSPDGVAGGFAGISNDSLIF  257 (357)
T ss_dssp             EEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE-ECCCSSTTTCCBSCEEEEETTEEEE
T ss_pred             EEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE-ecCCCCCCcccccceEEEECCEEEE
Confidence              11111100011012222 256677777642      34677776  333221 2211111   111123345678888


Q ss_pred             EecCC----------------------ceEEEEECCCCC--eEEEEeccCccceeEEcCCCCeeEEEecCCcccccccce
Q 021319          250 SASED----------------------LFIDISNVHTGR--TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV  305 (314)
Q Consensus       250 s~s~d----------------------~~v~v~~~~~~~--~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~  305 (314)
                      .|+.+                      ..+.++|..+.+  .+..++. .+....+...++.+++.||.+.....  ...
T Consensus       258 ~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~--~~~  334 (357)
T 2uvk_A          258 AGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ-GRAYGVSLPWNNSLLIIGGETAGGKA--VTD  334 (357)
T ss_dssp             ECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS-CCBSSEEEEETTEEEEEEEECGGGCE--EEE
T ss_pred             EcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC-CcccceeEEeCCEEEEEeeeCCCCCE--eee
Confidence            78732                      246788887543  3333332 11212223346888899997754321  244


Q ss_pred             EEecccc
Q 021319          306 FRIYGFE  312 (314)
Q Consensus       306 ~~~~~~~  312 (314)
                      +.++.++
T Consensus       335 v~~l~~~  341 (357)
T 2uvk_A          335 SVLITVK  341 (357)
T ss_dssp             EEEEEC-
T ss_pred             EEEEEEc
Confidence            5555554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.45  E-value=2.1  Score=37.33  Aligned_cols=105  Identities=13%  Similarity=0.073  Sum_probs=61.1

Q ss_pred             cceEEEEECCCCC-EEEEeeCCCeEEEeeCCCcE---EEEEeee---------cccCeEEEEEccC----CcEEEEecC-
Q 021319          192 AGCYCIAIDPMGR-YFAVGSADSLVSLWDISEML---CVRTFTK---------LEWPVRTISFSHT----GDYIASASE-  253 (314)
Q Consensus       192 ~~i~~i~~~~~~~-~l~t~~~dg~i~vwd~~~~~---~~~~~~~---------~~~~v~~~~~sp~----~~~l~s~s~-  253 (314)
                      ..+..|+|.|+|+ .|+++.+.|.|++++.....   .+..+..         .......|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4578999999996 34456788999999754221   1122110         1345788999997    444333222 


Q ss_pred             -C----------ceEEEEECCC----------CCeEEEEeccC---ccceeEEcCCCCeeEEEecCC
Q 021319          254 -D----------LFIDISNVHT----------GRTVHQIPCRA---AMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       254 -d----------~~v~v~~~~~----------~~~~~~~~~~~---~i~~v~~~~~~~~la~~~~d~  296 (314)
                       +          ..|.-+.+..          .+.+..++...   .-..++|.||+.+.++.|+..
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence             1          1333344321          12333333111   256899999999988888654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.58  E-value=6.3  Score=39.46  Aligned_cols=171  Identities=11%  Similarity=0.140  Sum_probs=100.5

Q ss_pred             CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      ..+|-|.|+.++..+...+...  -+.-++|..+.++.-. ...+.|+|+.+...++......++.-..|-.....-++ 
T Consensus        47 ~~~vvIidl~~~~~~~rrpi~A--dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lV-  122 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPISA--DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV-  122 (1630)
T ss_pred             CceEEEEECCCCCCcccccccc--hhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEE-
Confidence            3467788877654332222211  1234678888877765 67899999988777777666667777777544433333 


Q ss_pred             cCCceEEEEeCC-CCCceeeeeec----ccceEEEEECCCCCEEEEee-------CCCeEEEeeCCCcEEEEEeeecccC
Q 021319          168 TGNGTVEVLTYP-SLRPLDTVVAH----TAGCYCIAIDPMGRYFAVGS-------ADSLVSLWDISEMLCVRTFTKLEWP  235 (314)
Q Consensus       168 ~~~g~~~~~~~~-~~~~~~~~~~~----~~~i~~i~~~~~~~~l~t~~-------~dg~i~vwd~~~~~~~~~~~~~~~~  235 (314)
                       .+..|.-|+.. ...|.+.+..|    +..|..-..+++.++++..|       -.|.+.+|.+++.. -+.+.+|...
T Consensus       123 -T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~  200 (1630)
T 1xi4_A          123 -TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAAS  200 (1630)
T ss_pred             -cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhh
Confidence             45578888875 34555555544    34566667788888876332       34778888876542 2344555443


Q ss_pred             eEEEEEc--cC-CcEEEEecC---CceEEEEECCC
Q 021319          236 VRTISFS--HT-GDYIASASE---DLFIDISNVHT  264 (314)
Q Consensus       236 v~~~~~s--p~-~~~l~s~s~---d~~v~v~~~~~  264 (314)
                      ...+...  |. ...++-+..   .++++|-++..
T Consensus       201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~  235 (1630)
T 1xi4_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT  235 (1630)
T ss_pred             hheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence            3222221  11 123332222   26888888754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.41  E-value=9.9  Score=38.15  Aligned_cols=194  Identities=12%  Similarity=0.177  Sum_probs=110.6

Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccC-CeEeeee---
Q 021319           71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRR---  146 (314)
Q Consensus        71 ~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~---  146 (314)
                      +...+|.. ++++-- ...++.|+|+.+........+...++-..|-.+.. |+..+ +..+.-|++.. ..|++-.   
T Consensus        70 sAIMnP~~-~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           70 SAIMNPAS-KVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hhccCCCc-ceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            34567764 455544 36899999999888888877777777777765543 43332 35788898853 2332111   


Q ss_pred             --ccCcceeeEEeccCCCeEEEEc-------CCceEEEEeCCCCCceeeeeecccceEEEEEC--CC-CCEEEEeeC---
Q 021319          147 --KFGYEVNEIAWNMTGEMFFLTT-------GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID--PM-GRYFAVGSA---  211 (314)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--~~-~~~l~t~~~---  211 (314)
                        ..+.++..-.-+++.+.++..+       -.|.+.+|...... .+.+.||...-..+.+.  +. .+.++.+.+   
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~  224 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence              1134444445566666554332       23666666654322 22344554433222221  11 123332222   


Q ss_pred             CCeEEEeeCCCc-----EE----EEEeee----cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE
Q 021319          212 DSLVSLWDISEM-----LC----VRTFTK----LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ  270 (314)
Q Consensus       212 dg~i~vwd~~~~-----~~----~~~~~~----~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~  270 (314)
                      .+.+++-++...     ..    +..+..    .+. ..++..|+....+..-+.-|.++++|+.||..+..
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Df-pv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF-PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             CceEEEEecCCCccCCCCCccccccccCCcccccCc-ceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence            267888887432     00    111111    122 33467788888888999999999999999987743

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.11  E-value=2.3  Score=37.82  Aligned_cols=90  Identities=10%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             cEEEEeCCC----C-ceeeeEEecCceEEEEEccCCCEEEEEeC-CCcEEEEEccCCeE-------------eeeeccCc
Q 021319           90 TVRLWDARS----G-KCSQQAELSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKP-------------IHRRKFGY  150 (314)
Q Consensus        90 ~v~iwd~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~-------------~~~~~~~~  150 (314)
                      .|.+.|.+.    + ...........+-.+..+|||+++++++. +.++.++|.++...             ....+.+.
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            366666654    2 22333444445556788999999987664 77899999875321             22334555


Q ss_pred             ceeeEEeccCCCeEEEEcCCceEEEEeCC
Q 021319          151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYP  179 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  179 (314)
                      .....+|.++|..+.+..-+..+.-|++.
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~  407 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNME  407 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             cccEEEECCCCceEeeeeecceEEEEecc
Confidence            67788999999777777789999999864

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.07  E-value=4.2  Score=33.08  Aligned_cols=217  Identities=11%  Similarity=0.093  Sum_probs=102.9

Q ss_pred             cEEEEeCCCCceeeeEEec---CceEEEEEccCCCEEEEEeCC----C-------cEEEEEccCCeEeeeeccCcc-eee
Q 021319           90 TVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRD----D-------ELTILDVRKFKPIHRRKFGYE-VNE  154 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d----~-------~i~i~d~~~~~~~~~~~~~~~-~~~  154 (314)
                      .+..||..+++... ....   ..........++..++.|+..    +       .+..+|+.+.+.......... ...
T Consensus        25 ~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           25 AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            47889988877544 2221   112223344577788888731    1       167788876654332111111 111


Q ss_pred             EEeccCCCeEEEEcCC-------ceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCC------CeEEEee
Q 021319          155 IAWNMTGEMFFLTTGN-------GTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSAD------SLVSLWD  219 (314)
Q Consensus       155 ~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~d------g~i~vwd  219 (314)
                      .....++..+++++.+       ..+.+|+....+-  +..+......-.++.  .++++++.|+.+      ..+.+||
T Consensus       104 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd  181 (318)
T 2woz_A          104 GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYN  181 (318)
T ss_dssp             EEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEE
T ss_pred             ceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEc
Confidence            1112356666666542       3456666543321  111110001111222  357777777642      3589999


Q ss_pred             CCCcEEEEE--eeecccCeEEEEEccCCcEEEEecCC-----ceEEEEECCCCCe--EEEEec-cCccceeEEcCCCCee
Q 021319          220 ISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRT--VHQIPC-RAAMNSVEWNPKYNLL  289 (314)
Q Consensus       220 ~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~~~~--~~~~~~-~~~i~~v~~~~~~~~l  289 (314)
                      +.+.+-...  +.........+.  -++++++.|+.+     ..+.++|..+.+=  +..++. +..-..+.  .++.++
T Consensus       182 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~  257 (318)
T 2woz_A          182 PKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLY  257 (318)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEE
T ss_pred             CCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEE
Confidence            887653322  111111112222  367777777653     3467888776532  111211 11112222  257788


Q ss_pred             EEEecCCccc------ccccceEEeccccC
Q 021319          290 AYAGDDKNKY------QADEGVFRIYGFEN  313 (314)
Q Consensus       290 a~~~~d~~~~------~~~~~~~~~~~~~~  313 (314)
                      +.||.+....      ......+.+|++++
T Consensus       258 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  287 (318)
T 2woz_A          258 AIGGFAMIQLESKEFAPTEVNDIWKYEDDK  287 (318)
T ss_dssp             EECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred             EECCeeccCCCCceeccceeeeEEEEeCCC
Confidence            8888654210      11235567777754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.72  E-value=0.76  Score=38.24  Aligned_cols=113  Identities=7%  Similarity=0.026  Sum_probs=68.5

Q ss_pred             CeEEEEcCCceEEEEeCCCCCceeeeeecc-cceEEEE---ECCCCCEEEEe-eCCCeEEEeeCCCcEEEEEeeec----
Q 021319          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIA---IDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTKL----  232 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~i~~i~---~~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~----  232 (314)
                      ..+++++.+|.+..++..+++..-++.... .++....   ...++..++.. ..||.+..+|..++.....+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            356777888888888877766555443321 1111111   00133444444 68999999999888554433211    


Q ss_pred             ccCeEE----EEEc----cCCcEEEEecCCceEEEEECCCCCeEEEEecc
Q 021319          233 EWPVRT----ISFS----HTGDYIASASEDLFIDISNVHTGRTVHQIPCR  274 (314)
Q Consensus       233 ~~~v~~----~~~s----p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~  274 (314)
                      ..|+..    +-..    ..+..+++|+.++.+...|..+|+.+.++...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            112211    0000    15678889999999999999999999988643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.51  E-value=4.8  Score=32.68  Aligned_cols=173  Identities=12%  Similarity=0.044  Sum_probs=80.2

Q ss_pred             CCCEEEEEeC----CC-------cEEEEeCCCCceeeeEEecCc--eEEEEEccCCCEEEEEeCC-------CcEEEEEc
Q 021319           78 HADLIATASG----DK-------TVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD-------DELTILDV  137 (314)
Q Consensus        78 ~~~~l~s~~~----D~-------~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-------~~i~i~d~  137 (314)
                      ++.+++.|+.    ++       .+..+|..+.+..........  ...++. .+++.++.|+.+       ..+.++|+
T Consensus        56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~  134 (318)
T 2woz_A           56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDP  134 (318)
T ss_dssp             SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred             CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeC
Confidence            3567777773    12       167788887765443222111  111222 266777777754       24778888


Q ss_pred             cCCeEeeeeccCcc-eeeEEeccCCCeEEEEcC------CceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEE
Q 021319          138 RKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTG------NGTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAV  208 (314)
Q Consensus       138 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t  208 (314)
                      .+.+.......... ....+...++..+++++.      ...+..|+....+-  +..+........++.+  ++++++.
T Consensus       135 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~  212 (318)
T 2woz_A          135 VAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIA  212 (318)
T ss_dssp             TTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             CCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEE
Confidence            77654332221111 111111245666666643      23577777654321  1111111111122223  5677777


Q ss_pred             eeCCC-----eEEEeeCCCcEEEEEeeecccC-eEEEEEccCCcEEEEecCC
Q 021319          209 GSADS-----LVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASED  254 (314)
Q Consensus       209 ~~~dg-----~i~vwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~d  254 (314)
                      |+.++     .+.+||+.+.+-.. +.....+ ....+...++++++.|+.+
T Consensus       213 GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~i~v~GG~~  263 (318)
T 2woz_A          213 GGVTEDGLSASVEAFDLKTNKWEV-MTEFPQERSSISLVSLAGSLYAIGGFA  263 (318)
T ss_dssp             EEEETTEEEEEEEEEETTTCCEEE-CCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             cCcCCCCccceEEEEECCCCeEEE-CCCCCCcccceEEEEECCEEEEECCee
Confidence            76542     47788887654322 1111111 1111122457777777654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.20  E-value=5.8  Score=33.03  Aligned_cols=226  Identities=16%  Similarity=0.133  Sum_probs=118.1

Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-------cCceEEEEEccC---CCEEEEE-e--CCCc
Q 021319           65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-------SGENINITYKPD---GTHIAVG-N--RDDE  131 (314)
Q Consensus        65 h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~l~~~-~--~d~~  131 (314)
                      .-.....++|.|++ .++++--..|.|++++...++......+       ......++++|+   +..|.+. +  .+..
T Consensus        30 gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            34556789999975 5766655589999998766654222111       234567999985   4455443 2  3444


Q ss_pred             EEEEEccC----------CeEeee-ec--cCcceeeEEeccCCCeEEEEcC-------------CceEEEEeCCCC----
Q 021319          132 LTILDVRK----------FKPIHR-RK--FGYEVNEIAWNMTGEMFFLTTG-------------NGTVEVLTYPSL----  181 (314)
Q Consensus       132 i~i~d~~~----------~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~-------------~g~~~~~~~~~~----  181 (314)
                      |.-+.+..          .+.+.. ..  .......++|.+++.++++.+.             .|.|..++....    
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            55555433          122211 11  1123456899999987776542             355555554322    


Q ss_pred             Cce---eee-eecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcEE------------------EEEeeecccCeEE
Q 021319          182 RPL---DTV-VAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLC------------------VRTFTKLEWPVRT  238 (314)
Q Consensus       182 ~~~---~~~-~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~------------------~~~~~~~~~~v~~  238 (314)
                      .+.   ..+ .+| ..+..++|+|+|++.++- +.|+.=.|.-+..+..                  +..+..+......
T Consensus       189 nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G  267 (347)
T 3das_A          189 NPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG  267 (347)
T ss_dssp             CSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred             CCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence            111   111 133 246789999988766543 2233222222222110                  1111111123455


Q ss_pred             EEEccCCcEEEEecCCceEEEEECCCCCeE---EEEec--cCccceeEEcCCCCeeEEEe
Q 021319          239 ISFSHTGDYIASASEDLFIDISNVHTGRTV---HQIPC--RAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~---~~~~~--~~~i~~v~~~~~~~~la~~~  293 (314)
                      ++|. +|..+...-....|....+...+..   ..+..  .++++.|+..|+|.++++..
T Consensus       268 ~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          268 IAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             eEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            6665 3555555544555544444433211   12211  35789999999998876554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.97  E-value=8.3  Score=34.43  Aligned_cols=107  Identities=18%  Similarity=0.267  Sum_probs=70.5

Q ss_pred             cceeeEEeccCCCeEEEEc-CCceEEEEeCCCC---------Cceeeee---ecccceEEEEECCCCCEEEEeeCCCeEE
Q 021319          150 YEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSL---------RPLDTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVS  216 (314)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~---------~~~~~~~---~~~~~i~~i~~~~~~~~l~t~~~dg~i~  216 (314)
                      .....+..+|+|+++++++ .+.++.++++...         .+...+.   .-..++...+|+++|....+---|..|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            3456678899999988876 5789999987632         1111111   1245678999999996666777899999


Q ss_pred             EeeCCCc----------EEEEEeeecccCeEEEEE------ccCCcEEEEe---cCCceE
Q 021319          217 LWDISEM----------LCVRTFTKLEWPVRTISF------SHTGDYIASA---SEDLFI  257 (314)
Q Consensus       217 vwd~~~~----------~~~~~~~~~~~~v~~~~~------sp~~~~l~s~---s~d~~v  257 (314)
                      -|++...          ..++++..| ..+..+.-      .|+|++|++.   |.|..+
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~-YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl  461 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVH-YQPGHLHASLCETNEADGKWLVALSKFSKDRFL  461 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECS-SCEEEEEETTTTSTTCCSCEEEEEESCCTTSSC
T ss_pred             EEeccHHHHHhcCccCCeeeeccccc-cCCcccccCCCccCCCCccEEEEecccccccCc
Confidence            9998653          345554333 23333433      5788999887   456443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.84  E-value=5.7  Score=32.31  Aligned_cols=163  Identities=9%  Similarity=0.059  Sum_probs=86.9

Q ss_pred             EEEccCCCEEEEEeCC--------------CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEc----CCceEEE
Q 021319          114 ITYKPDGTHIAVGNRD--------------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT----GNGTVEV  175 (314)
Q Consensus       114 ~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~  175 (314)
                      --+++++.+|+-....              ..|...++...+...-.  ..  ....+++.++.++...    ....+..
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~--~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD--PD--PCIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE--CS--CEEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee--cC--CccEEEEeCCEEEEEeecCCCCceEEE
Confidence            3457788888755432              24555555443321111  11  1235677888877765    3445555


Q ss_pred             EeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC-CCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC
Q 021319          176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED  254 (314)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d  254 (314)
                      .++.... ...+..+..    .+++++++.|+-.+. ...|..-++........+.   .+.. ..++|++.+|+-...+
T Consensus       134 ~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          134 IRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             EETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGG
T ss_pred             EECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcC
Confidence            5555433 223333322    346777887764443 5678888887665433332   2222 3466999988865543


Q ss_pred             --ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEe
Q 021319          255 --LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       255 --~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~  293 (314)
                        ..|..-++..+. ...+. ...+  ..|+|++.+|..+.
T Consensus       205 ~~~~I~~~~ldG~~-~~~Lt-~~~~--~~~~~~g~~Iy~~~  241 (302)
T 3s25_A          205 RDNAIVHVNINNPN-PVVLT-EANI--EHYNVYGSLIFYQR  241 (302)
T ss_dssp             GTTEEEEECSSSCC-CEECS-CSCE--EEEEEETTEEEEEE
T ss_pred             CCcEEEEEECCCCC-eEEEe-CCCc--ceEEECCCEEEEEE
Confidence              356555554433 22332 2222  34777777776553

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=90.74  E-value=6  Score=32.38  Aligned_cols=178  Identities=11%  Similarity=0.084  Sum_probs=95.9

Q ss_pred             cCCCEEEEEeCCCcEEEEEccCCeEeee---------eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC------
Q 021319          118 PDGTHIAVGNRDDELTILDVRKFKPIHR---------RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR------  182 (314)
Q Consensus       118 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------  182 (314)
                      ++...+++.+.+|.++-..+...+....         .+.+-.+..+......+.+++.+..|.++.+......      
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~   85 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS   85 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence            4556778888999999887766543221         1112233344444556677788888888777543211      


Q ss_pred             ---ceeee-e-ecccceEEE-EECC--CCCEEEEeeCCCeEEEeeCCCcE-------EEEEeeecccCeEEEEEccCCcE
Q 021319          183 ---PLDTV-V-AHTAGCYCI-AIDP--MGRYFAVGSADSLVSLWDISEML-------CVRTFTKLEWPVRTISFSHTGDY  247 (314)
Q Consensus       183 ---~~~~~-~-~~~~~i~~i-~~~~--~~~~l~t~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~sp~~~~  247 (314)
                         ++... . .....+..+ ....  +..+++..+.+|.++--.+....       ..-.+.. ...+-.+.....+..
T Consensus        86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~  164 (312)
T 1suu_A           86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEK  164 (312)
T ss_dssp             --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCE
T ss_pred             CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCE
Confidence               11111 0 112234333 3321  45678888999998888875432       1112222 334555554445567


Q ss_pred             EEEecCCceEEEEECCC----CC-----eEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319          248 IASASEDLFIDISNVHT----GR-----TVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~----~~-----~~~~~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      ++.++.+|.+..+....    ++     ....+.....|.++..-+++..++..+..+
T Consensus       165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G  222 (312)
T 1suu_A          165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENG  222 (312)
T ss_dssp             EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTS
T ss_pred             EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCC
Confidence            88889998887776543    22     112222234555555444455555666544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.51  E-value=22  Score=34.15  Aligned_cols=38  Identities=18%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319          235 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~  272 (314)
                      .+.+++..++..++++-+.|+.+++|++.+++.+....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677788889999999999999999999999887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-29
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-23
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-15
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-11
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-09
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.004
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	9e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-07
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	7e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (279), Expect = 2e-29
 Identities = 54/303 (17%), Positives = 108/303 (35%), Gaps = 26/303 (8%)

Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
           +GH+  V  V ++   + + S S D T +VW  E     +     L+GH DSV  + +D 
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT----LKGHTDSVQDISFDH 69

Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
               L + ++                          +++  P+G HI   +RD  + + +
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129

Query: 137 VRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY 195
           V+    +         V  +  N  G +    + + TV V    +      +  H     
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 196 CIA--------------------IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP 235
           CI+                        G +   GS D  + +WD+S  +C+ T    +  
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 236 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGD 294
           VR + F   G +I S ++D  + + +    R +  +      + S++++     +     
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 295 DKN 297
           D+ 
Sbjct: 310 DQT 312

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.6 bits (218), Expect = 7e-21
 Identities = 49/244 (20%), Positives = 91/244 (37%), Gaps = 27/244 (11%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             R   GH   V SV+    G  + S S D+T ++W ++     K       GH + V  
Sbjct: 93  CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT----FTGHREWVRM 148

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDD 130
           +  +     LIA+ S D+TVR+W   + +C  +  E       I++ P+ ++ ++     
Sbjct: 149 VRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207

Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
             T                           G      + + T+++    +   L T+V H
Sbjct: 208 SETK---------------------KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS 250
                 +     G++    + D  + +WD     C++T    E  V ++ F  T  Y+ +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 306

Query: 251 ASED 254
            S D
Sbjct: 307 GSVD 310

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.3 bits (217), Expect = 1e-20
 Identities = 43/259 (16%), Positives = 90/259 (34%), Gaps = 24/259 (9%)

Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT 121
           L GH   V ++ + P    ++ +AS D T+++WD  +G   +  +   +++         
Sbjct: 13  LSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM--TGEMFFLTTGNGTVEVLTYP 179
            +      D    L   +     R   G++ N  + ++   G+     + + T+++    
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 180 SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI 239
           +   + T   H      +  +  G   A  S D  V +W ++   C     +    V  I
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 240 SF--------------------SHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMN 278
           S+                       G ++ S S D  I + +V TG  +  +      + 
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251

Query: 279 SVEWNPKYNLLAYAGDDKN 297
            V ++     +    DDK 
Sbjct: 252 GVLFHSGGKFILSCADDKT 270

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (155), Expect = 2e-12
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 25/185 (13%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             + +TGH++ V  V  N  GT +AS S DQT RVW +           ELR H   V+ 
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA----ELREHRHVVEC 190

Query: 72  LCW-------------------DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI 112
           + W                     K    + + S DKT+++WD  +G C          +
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 113 N-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGN 170
             + +   G  I     D  L + D +  + +       + V  + ++ T       + +
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 310

Query: 171 GTVEV 175
            TV+V
Sbjct: 311 QTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (151), Expect = 8e-12
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
               GH   V  V ++  G  + S + D+T RVW  +     K     L  H   V  L 
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK----NKRCMKTLNAHEHFVTSLD 296

Query: 74  WDPKHADLIATASGDKTVRLWD 95
           +    A  + T S D+TV++W+
Sbjct: 297 FHK-TAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.1 bits (149), Expect = 1e-11
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 5   SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
            I +    S           +      G  L SGS D+T ++W +     G      L G
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS---TGMCLM-TLVG 245

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHI 123
           H + V  + +       I + + DKT+R+WD ++ +C +        +  + +     ++
Sbjct: 246 HDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 124 AVGNRDDELTILD 136
             G+ D  + + +
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 8e-07
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 179 PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 238
           P       +  H +    +   P+       S D+ + +WD       RT       V+ 
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64

Query: 239 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKN 297
           ISF H+G  +AS S D+ I + +      +  +      ++SV   P  + +  A  DK 
Sbjct: 65  ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 298 KY 299
             
Sbjct: 125 IK 126

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.6 bits (236), Expect = 4e-23
 Identities = 40/289 (13%), Positives = 84/289 (29%), Gaps = 7/289 (2%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R   GH  K++++ W      L S S D    +   + +   KV  I LR          
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGK--LIIWDSYTTNKVHAIPLRSSWVMTCAYA 106

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
               +       +      L          +            +    +  V +  D   
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166

Query: 134 ILDVRKFKPIHRR--KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT 191
            L   +             +V  ++      +F     + + ++          T   H 
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226

Query: 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW--PVRTISFSHTGDYIA 249
           +    I   P G  FA GS D+   L+D+     + T++       + ++SFS +G  + 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286

Query: 250 SASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKN 297
           +  +D   ++ +         +      ++ +        +A    D  
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.7 bits (200), Expect = 3e-18
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 4/151 (2%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
                   L  + + D + +LWD R G C Q       +IN I + P+G   A G+ D  
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 132 LTILDVRKFKPIHRRKFGYE---VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188
             + D+R  + +           +  ++++ +G +      +    V           + 
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309

Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
            H     C+ +   G   A GS DS + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (189), Expect = 9e-17
 Identities = 40/247 (16%), Positives = 80/247 (32%), Gaps = 6/247 (2%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
                      V + A+  +G  +A G +D    +++++          EL GH   +  
Sbjct: 89  KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC 148

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD-GTHIAVGNRDD 130
             +   +  + ++  GD T  LWD  +G+ +        ++              G  D 
Sbjct: 149 CRFLDDNQIVTSS--GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206

Query: 131 ELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEV--LTYPSLRPLDTV 187
              + DVR+            ++N I +   G  F   + + T  +  L         + 
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266

Query: 188 VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY 247
                G   ++    GR    G  D   ++WD  +          +  V  +  +  G  
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326

Query: 248 IASASED 254
           +A+ S D
Sbjct: 327 VATGSWD 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 6e-07
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232
           ++ +    +R   T+  H A  Y +      R     S D  + +WD      V      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96

Query: 233 EWPVRTISFSHTGDYI 248
              V T +++ +G+Y+
Sbjct: 97  SSWVMTCAYAPSGNYV 112

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48
               GH  +V  +     G  +A+GS D   ++W+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSV 280
           +M   RT       +  + +      + SAS+D  + I + +T   VH IP   + + + 
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 281 EWNPKYNLLAYAGDDKNKYQAD 302
            + P  N +A  G D      +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYN 125

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.9 bits (216), Expect = 3e-20
 Identities = 49/320 (15%), Positives = 94/320 (29%), Gaps = 42/320 (13%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH--------------GHGKVKDIELR 63
            H   V  V ++  G  LA+G  ++T +V+ +                     +      
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 64  GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI 123
                +  +C+ P    L   A                        +  ++ Y P G  +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 124 AVGNRDDELTILDVR-KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
             G+ D  + I D+R     +                 G+     + +  V V    +  
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 183 -------PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE------------M 223
                    ++   H    Y +     G+    GS D  V LW++               
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 224 LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-------CRAA 276
            C  T+   +  V +++ +   +YI S S+D  +   +  +G  +  +          A 
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358

Query: 277 MNSVEWNPKYNLLAYAGDDK 296
            N     P+YN+ A    D 
Sbjct: 359 ANGSSLGPEYNVFATGSGDC 378

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.8 bits (182), Expect = 9e-16
 Identities = 54/273 (19%), Positives = 95/273 (34%), Gaps = 32/273 (11%)

Query: 9   KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS 68
           +NL++         + SV ++  G  LA+G+ D+  R+W IE         + +    + 
Sbjct: 110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-----VMILQGHEQ 164

Query: 69  VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGN 127
                      D + + SGD+TVR+WD R+G+CS    +  G         DG +IA G+
Sbjct: 165 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 224

Query: 128 RDDELTILDVRKFKPIHRRKFGYE--------VNEIAWNMTGEMFFLTTGNGTVEVLTYP 179
            D  + + D      + R     E        V  + +   G+     + + +V++    
Sbjct: 225 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284

Query: 180 SLRPLD------------TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 227
           +                 T + H      +A      Y   GS D  V  WD      + 
Sbjct: 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344

Query: 228 TFTKLEWPVRTI------SFSHTGDYIASASED 254
                   V ++      S     +  A+ S D
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 9e-13
 Identities = 48/303 (15%), Positives = 97/303 (32%), Gaps = 42/303 (13%)

Query: 35  LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
                 +    +++        V+  +   H   V  + +     + +AT   +KT +++
Sbjct: 31  ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVY 88

Query: 95  DARSGKCSQQ------AELSGENIN-------------ITYKPDGTHIAVGNRDDELTIL 135
               G    +      A    EN+N             + + PDG  +A G  D  + I 
Sbjct: 89  RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148

Query: 136 DVRKFKPI-HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC 194
           D+   K +   +    ++  + +  +G+     +G+ TV +    + +   T+       
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT 208

Query: 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-------FTKLEWPVRTISFSHTGDY 247
                   G+Y A GS D  V +WD      V          T  +  V ++ F+  G  
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268

Query: 248 IASASEDLFIDISNVHTGRTV-------------HQIPCRAAMNSVEWNPKYNLLAYAGD 294
           + S S D  + + N+                     I  +  + SV        +     
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328

Query: 295 DKN 297
           D+ 
Sbjct: 329 DRG 331

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (134), Expect = 1e-09
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 7   PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA 66
           P        Y GHK  V SVA       + SGS D+    W  +    G      L+GH 
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK---SGNPLL-MLQGHR 350

Query: 67  DSVDQLCWDPKHA-----DLIATASGDKTVRLWDAR 97
           +SV  +      +     ++ AT SGD   R+W  +
Sbjct: 351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 34/263 (12%), Positives = 80/263 (30%), Gaps = 33/263 (12%)

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKC-----SQQAELSGENINITYKPDGTHIAVG 126
           L  D +          +    L++    +       +  + +     + +  DG ++A G
Sbjct: 21  LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG 80

Query: 127 NRDDELTILDVRKFKPIHRRKFGYE-------------------VNEIAWNMTGEMFFLT 167
             +    +  V     + R                         +  + ++  G+     
Sbjct: 81  C-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139

Query: 168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 227
             +  + +    + + +  +  H    Y +   P G     GS D  V +WD+    C  
Sbjct: 140 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 199

Query: 228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--------RAAMNS 279
           T +  +           G YIA+ S D  + + +  TG  V ++          + ++ S
Sbjct: 200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259

Query: 280 VEWNPKYNLLAYAGDDKNKYQAD 302
           V +      +     D++    +
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWN 282

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (189), Expect = 8e-17
 Identities = 41/284 (14%), Positives = 91/284 (32%), Gaps = 7/284 (2%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDP 76
            H + V +V  +     + +G      +VW I   G+   V  ++     + +      P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELT 133
                +       T+ +WD  +     +AEL+        +   PD         D  + 
Sbjct: 108 -DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166

Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
           + D+     + + +   +               T G                     T+ 
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226

Query: 194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE 253
            + +   P G + AVG   S V +  +++    +     E  V ++ F++ G +  S  +
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH-ESCVLSLKFAYCGKWFVSTGK 285

Query: 254 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 297
           D  ++      G ++ Q    +++ S + +     +     DK 
Sbjct: 286 DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK 329

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 3e-14
 Identities = 37/244 (15%), Positives = 77/244 (31%), Gaps = 4/244 (1%)

Query: 11  LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
           +   +       + S      G  L  G    T  +W +         ++     A    
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 71  QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD 130
            +  D K      +        L +    +  Q        I+I+       +  G  D+
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT--KLWTGGLDN 205

Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
            +   D+R+ + + +  F  ++  + +  TGE   +   +  VEV  + +      +  H
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV-LHVNKPDKYQLHLH 264

Query: 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS 250
            +    +     G++F     D+L++ W       +    K    V +   S    YI +
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323

Query: 251 ASED 254
            S D
Sbjct: 324 GSGD 327

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 6/126 (4%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
              +      ++ S+ +  TG  LA G       V H+      ++       H   V  
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-----HESCVLS 270

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
           L +         +   D  +  W    G    Q++ S   ++     D  +I  G+ D +
Sbjct: 271 LKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK 329

Query: 132 LTILDV 137
            T+ +V
Sbjct: 330 ATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 6/164 (3%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             R++ GH      +  +  GTKL +G +D T R W +      +            +  
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-----HDFTSQIFS 229

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
           L + P   + +A       V +         Q        +++ +   G       +D+ 
Sbjct: 230 LGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288

Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175
           L          I + K    V     ++  +     +G+    V
Sbjct: 289 LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (183), Expect = 5e-16
 Identities = 51/288 (17%), Positives = 85/288 (29%), Gaps = 16/288 (5%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             +   GH   V +      G ++ SGS D T +VW       GK     L GH   V  
Sbjct: 8   SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV---TGKCLRT-LVGHTGGVWS 62

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
                                L    +        L G    +          V    D 
Sbjct: 63  SQMRDNIIISG-----STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT 191
              +   +         G+          G        +  V+V    +   L T+  HT
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177

Query: 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 251
              Y +  D  G +   GS D+ + +WD+    C+ T T  +     +      + + S 
Sbjct: 178 NRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSG 233

Query: 252 SEDLFIDISNVHTGRTV--HQIPCRAAMNSVEWNPKYNLLAYAGDDKN 297
           + D  + I ++ TG+ +   Q P +            N +  + DD  
Sbjct: 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 281

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 4e-12
 Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 8/188 (4%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
                    + + + D  V++WD  +  C    +    N   + + DG H+  G+ D  +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSI 199

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
            + DV     IH    G++       +   +      + TV++    + + L T+     
Sbjct: 200 RVWDVETGNCIHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 258

Query: 193 -GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW-----PVRTISFSHTGD 246
                  +     +    S D  V LWD+     +R    LE       V  I  S+T  
Sbjct: 259 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 318

Query: 247 YIASASED 254
             A  S +
Sbjct: 319 VCAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 12/122 (9%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
              TGH+     +        L SG+ D T ++W I+     +      +G       + 
Sbjct: 211 HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTL----QGPNKHQSAVT 264

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAEL------SGENINITYKPDGTHIAVGN 127
               + + + T+S D TV+LWD ++G+  +           G    I         AVG+
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324

Query: 128 RD 129
           R+
Sbjct: 325 RN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 17/170 (10%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
               GH  +V+S+ ++  G  + SGS+D + RVW +E             GH      + 
Sbjct: 171 HTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLT----GHQSLTSGME 224

Query: 74  WDPKHADLIATASGDKTVRLWDARSG--KCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
                 +++ + + D TV++WD ++G    + Q     ++     + +   +   + D  
Sbjct: 225 LKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 281

Query: 132 LTILDVRKFKPIHR------RKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175
           + + D++  + I           G  V  I  + T  +  + + NGT E 
Sbjct: 282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 1/69 (1%)

Query: 179 PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 238
             L+    +  H        +   G     GS D+ + +W      C+RT       V +
Sbjct: 4   GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62

Query: 239 ISFSHTGDY 247
                    
Sbjct: 63  SQMRDNIII 71

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.7 bits (179), Expect = 2e-15
 Identities = 37/265 (13%), Positives = 83/265 (31%), Gaps = 29/265 (10%)

Query: 16  YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD 75
           ++   + +   AWN   T++A    +    ++    +   +V   EL+ H   V  + W 
Sbjct: 3   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH--ELKEHNGQVTGVDWA 60

Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDEL 132
           P   + I T   D+   +W  +         +         + + P+    AVG+    +
Sbjct: 61  PDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119

Query: 133 TILDVRKFKP-----IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT---------- 177
           +I    +          ++     V  + W+    +    + +    + +          
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179

Query: 178 --------YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
                    P    +    +     + +     G   A  S DS V L D  + + V T 
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239

Query: 230 TKLEWPVRTISFSHTGDYIASASED 254
                P+  ++F      +A+  + 
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDC 264

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 31/263 (11%), Positives = 63/263 (23%), Gaps = 30/263 (11%)

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGT 121
             + +    W+      IA    +  V +++    K  Q  EL   N  +T   + PD  
Sbjct: 6   LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL 181
            I     D    +  ++                                    V++    
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 182 -------RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE------------ 222
                            +    +   P     A GS D    ++                
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

Query: 223 ------MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV-HTGRTVHQIPCRA 275
                    +   +     V  + FS  G  +A  S D  + +++               
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244

Query: 276 AMNSVEWNPKYNLLAYAGDDKNK 298
            + +V +  + +L+A   D    
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPV 267

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 8/89 (8%)

Query: 15  EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
            + G        +      +    ++D+ A        G           H +SV Q+  
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSE-----GSAAAGAGLDSLHKNSVSQISV 333

Query: 75  DPKHAD---LIATASGDKTVRLWDARSGK 100
                       T   D  + +WD RS +
Sbjct: 334 LSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 9/195 (4%)

Query: 35  LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
                V++                  E       V  +C+       +A  S D TV L 
Sbjct: 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLA 228

Query: 95  DARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDE-LTILDVRKFKPIHRRKFGYEV 152
           DA            +   + +T+  + + +A G+     L   D    K     +     
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPK 288

Query: 153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY----FAV 208
                 +T    F           +  +   LD+   H      I++   G+     F  
Sbjct: 289 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCT 346

Query: 209 GSADSLVSLWDISEM 223
              D  +S+WD+  +
Sbjct: 347 TGMDGGMSIWDVRSL 361

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 8e-15
 Identities = 35/307 (11%), Positives = 78/307 (25%), Gaps = 29/307 (9%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
             K  +  +    + + L   S D +  V+  +      V  ++   +   +    +   
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI-QAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 78  HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV 137
               I   +    +   D       Q    +  N+ I          +     +  I  +
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127

Query: 138 RKFKPIHRRKF---------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188
                                 +      +       +   N  V+    P     +  +
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187

Query: 189 AHTAGC----YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE----------- 233
             +           +      +A  S D  V++    +       +K             
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247

Query: 234 ----WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 289
               +PV +I FS    ++ +A  D  I   N+ T + +         + V+     N+L
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307

Query: 290 AYAGDDK 296
             A  D 
Sbjct: 308 CLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 28/274 (10%), Positives = 63/274 (22%), Gaps = 35/274 (12%)

Query: 57  VKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ----AELSGEN 111
           ++ +++     D +  +   P    L+   S D ++ ++       +             
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 112 INITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
           +   +  +    I VG    E+  +D+                 I          L   +
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119

Query: 171 GTVEVLTY--------PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222
               +                               +D       VG  +S V  + +  
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179

Query: 223 MLCVRT----FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV---------- 268
                                      +  A +S D  + +                   
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239

Query: 269 ------HQIPCRAAMNSVEWNPKYNLLAYAGDDK 296
                         +NS+E++P++  L  AG D 
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG 273

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 27/270 (10%), Positives = 69/270 (25%), Gaps = 25/270 (9%)

Query: 9   KNLHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIE---PHGHGKVKDIELRG 64
           KN+   +   +K  +    +   T  ++  G+V        +            +  L  
Sbjct: 45  KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGI 104

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
                         +        D         + K         +N   T   + + + 
Sbjct: 105 CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164

Query: 125 VGNRDDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL--- 176
           VG  + ++    +   +                +        E +  ++ +G V V    
Sbjct: 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224

Query: 177 ------------TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224
                        +   R              I   P  ++     +D ++S W++    
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284

Query: 225 CVRTFTKLEWPVRTISFSHTGDYIASASED 254
            ++ F K       +  + + + +  A+ D
Sbjct: 285 KIKNFAKFN-EDSVVKIACSDNILCLATSD 313

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            + + T     V+S+ ++     L +   D     W+++     K      + + DSV +
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ---TRKKIKNFAKFNEDSVVK 299

Query: 72  LCWDPKHADLIATASGDKTVRLWDA 96
           +       +++  A+ D T +   A
Sbjct: 300 IACSD---NILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 21/193 (10%), Positives = 49/193 (25%), Gaps = 27/193 (13%)

Query: 28  WNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87
            +   ++L  G  +   + + + P        IE  G    +  +   PK  +  A +S 
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRL-PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214

Query: 88  DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK 147
           D  V +           +               T++A                       
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA----------------------- 251

Query: 148 FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA 207
             Y VN I ++   +  +    +G +      + + +            + I        
Sbjct: 252 --YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIACSDNILC 308

Query: 208 VGSADSLVSLWDI 220
           + ++D        
Sbjct: 309 LATSDDTFKTNAA 321

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 9e-13
 Identities = 33/270 (12%), Positives = 72/270 (26%), Gaps = 24/270 (8%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG--------HADSV 69
            H   + SV+     +   S S D   +VW  +   +   KD             H D +
Sbjct: 12  AHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 70  DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
             +  D     L+AT S    +  +       +++      ++  +     +  A+    
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
               +         HR                     +         T      +++ + 
Sbjct: 130 SNDRL-------LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSL------WDISEMLCVRTFTKLEWPVRTISFSH 243
            +     + I   G   A G  +  V +        +       +       +R++ FS 
Sbjct: 183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241

Query: 244 TGDYIASASEDLFIDISNVHTGRTVHQIPC 273
            G  +A A +        ++      +I  
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGS 271

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 6e-11
 Identities = 39/343 (11%), Positives = 87/343 (25%), Gaps = 68/343 (19%)

Query: 7   PFKNLHSREYTGHKKKVHSVAW-------NCTGTKLASGSVDQTARVWHIE------PHG 53
                 S  +  HK  +H V               +A+ S       + I          
Sbjct: 47  ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI 106

Query: 54  HGKVKDIELRGHADSVDQLCWDPKH----ADLIATASGDKTVRLWDARS----------- 98
             K+  ++      S   L W   +    +  +       T  +W               
Sbjct: 107 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166

Query: 99  --------GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY 150
                   G        S    ++     G  IA G  +  + I ++   +P++  +  +
Sbjct: 167 WSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQH 225

Query: 151 E-------VNEIAWNMTGEMFFLTTGNGTVEVLTY----------------PSLRPLDTV 187
                   +  + ++  G +  +   + +   +T                  S +     
Sbjct: 226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 285

Query: 188 VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT----KLEWPVRTISFSH 243
            AH++    ++ +  G        D  +  WD+     + T       +E     ++   
Sbjct: 286 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 345

Query: 244 TGDYIASASEDLFIDISNVHTGRTVHQ----IPCRAAMNSVEW 282
            GD +A         +               + C     S+ W
Sbjct: 346 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 388

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 6e-09
 Identities = 33/259 (12%), Positives = 77/259 (29%), Gaps = 33/259 (12%)

Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-------- 113
            + H   +  +           + SGD  +++WD +        + S  +          
Sbjct: 10  GKAHDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 114 ------ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167
                      +   +A  +   +L    + +     +         I   +      + 
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK--------VIFEKLDLLDSDMK 118

Query: 168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 227
             +         + R L   +  T       I     +    ++ +L     +     V 
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 178

Query: 228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM-------NSV 280
           +         ++  S  G  IA+   +  + IS + T R ++    + +M        SV
Sbjct: 179 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237

Query: 281 EWNPKYNLLAYAGDDKNKY 299
           +++P+ +LLA A D  +  
Sbjct: 238 KFSPQGSLLAIAHDSNSFG 256

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 33/257 (12%), Positives = 61/257 (23%), Gaps = 10/257 (3%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP---------HGHGKVKDIELR 63
           +  YT H  +      + +G   ASG V    R+W                         
Sbjct: 51  TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110

Query: 64  GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI 123
                      + +            T         +     +               + 
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170

Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
                                     Y  +   +  TG    +   NG     T      
Sbjct: 171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 230

Query: 184 LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWPVRTISFS 242
               VAH+   + +   P G   A  SAD  + +W+++ +   +T         + +   
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290

Query: 243 HTGDYIASASEDLFIDI 259
            T   + S S + FI+ 
Sbjct: 291 WTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 5e-07
 Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 1/92 (1%)

Query: 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 254
             +   P G      +  S V    +  +     +T+          S +G Y AS    
Sbjct: 21  VVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 255 LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY 286
             + I +      + +         V+     
Sbjct: 80  GNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 42/292 (14%), Positives = 77/292 (26%), Gaps = 22/292 (7%)

Query: 22  KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADL 81
               +     G K+   +   +     +      ++       H+         P     
Sbjct: 19  TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEI----YTEHSHQTTVAKTSPSG-YY 72

Query: 82  IATASGDKTVRLWDARSGKCSQQAELSG-------ENINITYKPDGTHIAVGNRDDELTI 134
            A+      VR+WD        +  +          + +   K          R   + +
Sbjct: 73  CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132

Query: 135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC 194
            D          +     +              + + TV +   P  +   T   HT   
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192

Query: 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV-------RTISFSHTGDY 247
           + +  +P G  FA    D  + L++  +      F                +++S  G  
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252

Query: 248 IASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKN 297
           IASAS D  I I NV T +    IP   R     +        L     +  
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 19  HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
           H   V  + W+  GTK+AS S D+T ++W++      KV+   +       DQ       
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVA---TLKVEK-TIPVGTRIEDQQLGIIWT 292

Query: 79  ADLIATASGDKTVRLWD 95
              + + S +  +   +
Sbjct: 293 KQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN--ITYKPDGTHIAVGNRDD 130
                    IA+AS DKT+++W+  + K  +   +     +  +        +   + + 
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 131 ELTILD 136
            +  ++
Sbjct: 304 FINFVN 309

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 1e-11
 Identities = 34/238 (14%), Positives = 78/238 (32%), Gaps = 12/238 (5%)

Query: 64  GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI 123
             +  V  L +D +    I +   D T+++WD  + +C  +  L+G   ++        +
Sbjct: 13  ETSKGVYCLQYDDQK---IVSGLRDNTIKIWDKNTLEC--KRILTGHTGSVLCLQYDERV 67

Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV---LTYPS 180
            +    D    +       +      +    +       M    + + ++ V    +   
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240
           +     +V H A    +  D         S D  + +W+ S    VRT    +  +  + 
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVS--ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185

Query: 241 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK 298
           +      + S S D  I + ++  G  +  +     +          +++ A D K K
Sbjct: 186 YR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 3e-11
 Identities = 47/293 (16%), Positives = 99/293 (33%), Gaps = 28/293 (9%)

Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
           +   K V+ + ++    K+ SG  D T ++W        ++    L GH  SV  L +D 
Sbjct: 12  SETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRI----LTGHTGSVLCLQYDE 65

Query: 77  KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
           +     ++ S  +   +              +  ++        T     +    + + D
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS----IAVWD 121

Query: 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT--GNGTVEVLTYPSLRPLDTVVAHTAGC 194
           +     I  R+           +  +  ++ +  G+ T++V    +   + T+  H  G 
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 254
            C+      R    GS+D+ + LWDI    C+R     E  VR I F +    I S + D
Sbjct: 182 ACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYD 237

Query: 255 LFIDISNVHTGRTVHQIPC----------RAAMNSVEWNPKYNLLAYAGDDKN 297
             I + ++                        +  ++++     +  +  D  
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDT 288

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 3e-10
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 13/156 (8%)

Query: 73  CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
                    I +ASGD+T+++W+  + +  +        I    +     +  G+ D+ +
Sbjct: 142 NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-LQYRDRLVVSGSSDNTI 200

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV---------LTYPSLRP 183
            + D+     +   + G+E          +       +G ++V                 
Sbjct: 201 RLWDIECGACLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259

Query: 184 LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
           L T+V H+   + +  D         S D  + +WD
Sbjct: 260 LRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-----LRGHA 66
            +        +           ++ SG+ D   +VW +      +          L  H+
Sbjct: 208 GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267

Query: 67  DSVDQLCWDPKHADLIATASGDKTVRLWD 95
             V +L +D      I ++S D T+ +WD
Sbjct: 268 GRVFRLQFDEFQ---IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 180 SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI 239
           SL+ +      + G YC+  D   +    G  D+ + +WD + + C R  T     V  +
Sbjct: 4   SLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61

Query: 240 SFSH 243
            +  
Sbjct: 62  QYDE 65

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 16  YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD 75
            T +  K            + SGS D T R+W IE           LR      + +   
Sbjct: 172 RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC-------LRVLEGHEELVRCI 224

Query: 76  PKHADLIATASGDKTVRLWDARSGKCSQQ-------AELSGENINITY-KPDGTHIAVGN 127
                 I + + D  +++WD  +    +          L   +  +   + D   I   +
Sbjct: 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSS 284

Query: 128 RDDELTILD 136
            DD + I D
Sbjct: 285 HDDTILIWD 293

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.0 bits (144), Expect = 7e-11
 Identities = 23/273 (8%), Positives = 52/273 (19%), Gaps = 36/273 (13%)

Query: 32  GTKLASGSVDQTARVWHI---EPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
             + A G       V+      P    ++ D         V  +      A L+    G 
Sbjct: 86  FARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145

Query: 89  KTVRLWDARSGKCSQQAEL--------SGENINITYKPDGTHIAVGNRDDELTILDVRKF 140
                         Q  +              +       +  A            V   
Sbjct: 146 SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205

Query: 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID 200
               +            N  G + +    +     +          +  + +G       
Sbjct: 206 CTGAQNCS---SQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFR 262

Query: 201 PMGRYFAVGSADS-------------------LVSLWDISEMLCVRTFTKLEWPVRTISF 241
             G        ++                     S    S        +        I  
Sbjct: 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIA 321

Query: 242 SHTGDY--IASASEDLFIDISNVHTGRTVHQIP 272
           +  G     A+++    +DI +  + +    + 
Sbjct: 322 AQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.4 bits (132), Expect = 2e-09
 Identities = 25/299 (8%), Positives = 50/299 (16%), Gaps = 43/299 (14%)

Query: 36  ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV------DQLCWDPKHADLIATASGDK 89
                  T   W       G      L                          A      
Sbjct: 38  LPAYFAGTTENWVSCAGC-GVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTD 96

Query: 90  TVRLWDARSGKCSQQAELSGENI--------NITYKPDGTHIAVGNRDD-ELTILDVRKF 140
            V ++D  +       EL              I        +            L V   
Sbjct: 97  YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA 156

Query: 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS------LRPLDTVVAHTAGC 194
                 K     +           +L +   ++      +      +       A     
Sbjct: 157 SDDQLTKSASCFHIHPGA--AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214

Query: 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 254
                +  G      ++  L      +           E   +  +F   G  + +  ++
Sbjct: 215 QAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274

Query: 255 L-------------------FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGD 294
                                        G+T   I      +++          YA  
Sbjct: 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS 333

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 13/160 (8%), Positives = 33/160 (20%), Gaps = 16/160 (10%)

Query: 13  SREYTGHKKKVHSVAWNCTGTKLASGSVD------QTARVWHIEPHGHGKVKDIELRGHA 66
           ++          +   N  G  + + +          A           +         +
Sbjct: 204 AQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRS 263

Query: 67  DSVDQLCWDPK--------HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
                +                  +  +  +      A  G+ S       ++  I    
Sbjct: 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ 323

Query: 119 DGTH--IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA 156
           DG     A     + L I D    +     +       ++
Sbjct: 324 DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLS 363

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 13/210 (6%), Positives = 44/210 (20%), Gaps = 33/210 (15%)

Query: 22  KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADL 81
                  +C  +  AS      A    +        ++   +    +   +      + +
Sbjct: 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQ-CTGAQNCSSQAAQANYPGMLVWAVASSI 233

Query: 82  IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
           +          +  A  G                ++  G  +    ++            
Sbjct: 234 LQGDIPAAGATMKAAIDGN-------ESGRKADNFRSAGFQMVAKLKNT----------- 275

Query: 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP 201
                      + I                    +T    +    + ++      I    
Sbjct: 276 -----------DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQ 323

Query: 202 MGRY--FAVGSADSLVSLWDISEMLCVRTF 229
            G    +A  +   ++ ++D +      + 
Sbjct: 324 DGASDNYANSAGTEVLDIYDAASDQDQSSV 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 11/122 (9%)

Query: 6   IPFKNLHSREYTGHKKKVHSVAWNCTGTKL-------ASGSVDQTARVWHIEPHGHGKVK 58
           I       +           VA       +       +   +        +         
Sbjct: 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308

Query: 59  DIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYK 117
            I     +D++          +D  A ++G + + ++DA S +     EL     +++ +
Sbjct: 309 PISNGHDSDAII---AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ 365

Query: 118 PD 119
            +
Sbjct: 366 NE 367

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 58.6 bits (140), Expect = 2e-10
 Identities = 24/317 (7%), Positives = 59/317 (18%), Gaps = 49/317 (15%)

Query: 26  VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA 85
            A       +   +      V  +       V    +             P +       
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVA---SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN 58

Query: 86  SGDKTVRLWDARSGKCSQQAELSGENI-------NITYKPDGTHIAVGNRDDE------- 131
           +    +   D  + K +  A LS           +    PDG  +       +       
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 132 -----LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT 186
                L +            +      ++      +   L      +  +   + +    
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178

Query: 187 VVAHTAGC-------------------------YCIAIDPMGRYFAVGSADSLVSLWDIS 221
           +                                         +  A           D+ 
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238

Query: 222 EMLCV-RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSV 280
                 + F  L     T   S           +  +   ++   + +           V
Sbjct: 239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAANLDHTYYCV 297

Query: 281 EWNPKYNLLAYAGDDKN 297
            ++ K + L   G   +
Sbjct: 298 AFDKKGDKLYLGGTFND 314

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.9 bits (133), Expect = 1e-09
 Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 5/127 (3%)

Query: 19  HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
                    +       A+  +        ++    GK    E     +        PK 
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLK---TGKTHTQEFADLTELYFTGLRSPKD 263

Query: 79  ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR 138
            + I        +  +D +  K  + A L      + +   G  + +G   ++L + +  
Sbjct: 264 PNQIYGVLN--RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

Query: 139 KFKPIHR 145
             + +  
Sbjct: 322 TLEKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.5 bits (119), Expect = 8e-08
 Identities = 24/296 (8%), Positives = 66/296 (22%), Gaps = 43/296 (14%)

Query: 18  GHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDI--ELRGHADSVDQLCW 74
             K    +              +         ++   +    ++         S+     
Sbjct: 37  PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 96

Query: 75  DPKHADLIATA-----------SGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI 123
            P   ++ AT                 + ++    G  ++          +         
Sbjct: 97  SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156

Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLR 182
           ++     ++  +DV+  K            +         F+   +      +L   +  
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216

Query: 183 PLDTVVA--------------------------HTAGCYCIAIDPMGRYFAVGSADSLVS 216
             D                               T   +     P       G  +  ++
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR-LA 275

Query: 217 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 272
            +D+ +   ++    L+     ++F   GD +        + + N  T   V  I 
Sbjct: 276 KYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 27/252 (10%), Positives = 61/252 (24%), Gaps = 34/252 (13%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
            S       + ++S A +  G ++ +          H               G      +
Sbjct: 80  LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 139

Query: 72  LCWDPKHADLIATASGDKTV------RLWDARSGK------------------------- 100
               P+   L+  A               D ++GK                         
Sbjct: 140 TFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 199

Query: 101 -CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN- 158
             S + E S       +K D    A  +       +D++  K   +              
Sbjct: 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259

Query: 159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW 218
              +   +      +        + +          YC+A D  G    +G   + ++++
Sbjct: 260 SPKDPNQIYGVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318

Query: 219 DISEMLCVRTFT 230
           +   +  V+   
Sbjct: 319 NPDTLEKVKNIK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 10/105 (9%), Positives = 35/105 (33%), Gaps = 7/105 (6%)

Query: 11  LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
            H++E+    +   +   +        G        + ++     K+       H  +  
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLK---QRKLIKAANLDH--TYY 295

Query: 71  QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT 115
            + +D    D +        + +++  + +  +  +L G +++ T
Sbjct: 296 CVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTT 339

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 4/117 (3%)

Query: 197 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYI-ASASED 254
            A+     Y  V +  + + + D++     ++     ++   T   +          +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 255 LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311
             I   ++ T +        +    V  +      A + D K  Y       R+   
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS--FAISPDGKEVYATVNPTQRLNDH 116

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (133), Expect = 1e-09
 Identities = 39/292 (13%), Positives = 86/292 (29%), Gaps = 14/292 (4%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           +   GH K + +++ +  G  L S   +     W I     G    +    HA  +  + 
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS---TGISNRVFPDVHATMITGIK 62

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
              K    + T S D  +++  A          ++ +  +       +            
Sbjct: 63  TTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
            + +     +      Y  + +A +   +   +   +  V V         +        
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 194 ----CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 249
                                     S+ +  E+    ++T     V  +S+S     +A
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 250 SASEDLFIDISNVHTGRTVHQI----PCRAAMNSVEWNPKYNLLAYAGDDKN 297
           + S D  + + N++       I       +++NSV W  +   +  AG D N
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAGQDSN 291

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 4e-05
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
           H+  +T H  KV  V+W+    +LA+GS+D +  VW++          I+      SV+ 
Sbjct: 216 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNS 274

Query: 72  LCWDPKHADLIATASGDKTVRLWD 95
           + W  +    I +A  D  ++ W+
Sbjct: 275 VIWLNET--TIVSAGQDSNIKFWN 296

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (132), Expect = 3e-09
 Identities = 29/295 (9%), Positives = 67/295 (22%), Gaps = 25/295 (8%)

Query: 21  KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHA 79
             VH    + +G  L     D    +  +       V +I+                +  
Sbjct: 62  YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121

Query: 80  DLIATASGDKTVRLWDARSGKCSQQAELSGENIN------------ITYKPDGTHIAVGN 127
             IA A       + D  + +  +     G   +            I          V  
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181

Query: 128 RDD-ELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPL 184
           ++  ++ ++D      +   +      +++   + +   F          V+       L
Sbjct: 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 241

Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML---CVRTFTKLEWPVRTISF 241
             +                 +   G   +   + D S  L            W +     
Sbjct: 242 VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP 301

Query: 242 SHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 296
           +  G  +   +      +    T     +I    A+           +   G D 
Sbjct: 302 ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV------FDIKAMTGDGSDP 350

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 26/192 (13%), Positives = 54/192 (28%), Gaps = 20/192 (10%)

Query: 81  LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF 140
              T      + L D  + +     +             G ++ V  RD ++ ++D+   
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93

Query: 141 KP--IHRRKFGYEVNEIAWNMT----GEMFFLT-TGNGTVEVLTYPSLRPLDTVVAHTAG 193
           +P  +   K G E   I  +       +             ++   +L P          
Sbjct: 94  EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153

Query: 194 CYCIAIDPMGRYFAV-GSADS---LVSLWDISEMLCVRTFTKLEWPVRTIS--------- 240
                  P  R  A+  S      +V++ +  ++L V            IS         
Sbjct: 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG 213

Query: 241 FSHTGDYIASAS 252
              +  Y  +A+
Sbjct: 214 LDGSHRYFITAA 225

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 12/141 (8%), Positives = 34/141 (24%), Gaps = 6/141 (4%)

Query: 5   SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
                 + ++  +                     +         +E    G++   E+R 
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE---TGEMAMREVRI 238

Query: 65  HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
                     +P              +  +D       ++  L     ++    DG+ + 
Sbjct: 239 MDVFYFSTAVNPAKTRA---FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVW 295

Query: 125 VGNRDDELTILDVRKFKPIHR 145
           +G    +L   D    +   +
Sbjct: 296 LGGALGDLAAYDAETLEKKGQ 316

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (121), Expect = 5e-08
 Identities = 24/217 (11%), Positives = 47/217 (21%), Gaps = 26/217 (11%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           R+     +++  +AW   G+KL     D              K             D L 
Sbjct: 128 RKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA 187

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
              +H                                    T + D            L 
Sbjct: 188 VWNQHES-------------------------SGVMATPFYTARKDIDPADPTAYRTGLL 222

Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
            +D+   +   R     +V   +  +             +E         +  V      
Sbjct: 223 TMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHS 281

Query: 194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
            Y + +   G    +G A   ++ +D   +       
Sbjct: 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 4e-07
 Identities = 20/227 (8%), Positives = 50/227 (22%), Gaps = 31/227 (13%)

Query: 80  DLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAV-GNRDDELTIL 135
           D I   +    + + D       +   ++            P G       N+ + L  +
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY 195
           D+   + + R         +                               +        
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGA------------------------ALSPDGKTLA 97

Query: 196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL 255
                            + V+L+D   +   + F         ++++  G  +     DL
Sbjct: 98  IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI-TMLAWARDGSKLYGLGRDL 156

Query: 256 FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 302
            +   +   G  V   P ++        P    +    +        
Sbjct: 157 HVM--DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 14/105 (13%), Positives = 28/105 (26%), Gaps = 8/105 (7%)

Query: 6   IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH 65
           +    +  RE         S A N   T+            + +E +       I+    
Sbjct: 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKN-----ASIKRVPL 278

Query: 66  ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110
             S   +         +        +  +DA + +   Q +L G 
Sbjct: 279 PHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 48/309 (15%), Positives = 97/309 (31%), Gaps = 31/309 (10%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
            + +GH   V ++ +   G  L SGS D+T RVW I+      V +              
Sbjct: 47  LQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV---RCLDI 102

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD-------------- 119
            + K+   I T S D T+ +W               +   + + P+              
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 162

Query: 120 --------GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG 171
                   G  +  G+ D+ L + DV + K ++    G+     +     E     + + 
Sbjct: 163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASM 221

Query: 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231
              +  +                    +    ++       +  S+         R F+ 
Sbjct: 222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSA--AADGSIRGWDANDYSRKFSY 279

Query: 232 LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLL 289
               +  I+  +  D I  +  +   +I N+ +G+ VH         + SV +  K  + 
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339

Query: 290 AYAGDDKNK 298
           A   D ++ 
Sbjct: 340 AVEKDGQSF 348

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 9e-07
 Identities = 40/250 (16%), Positives = 79/250 (31%), Gaps = 26/250 (10%)

Query: 62  LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDG 120
           LRGH  SV   C      + + T + DK +R++D+ + K   Q       +  + Y   G
Sbjct: 8   LRGHMTSV-ITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--NGTVEVLTY 178
             ++             +             V  +       + ++ TG  + T+ V   
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 179 PSLRPLDTV---------------------VAHTAGCYCIAIDPMGRYFAVGSADSLVSL 217
           P    +                        V          +   G     GS D+ + +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 218 WDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM 277
           WD+++M C+   +     + +  + H      SAS D  I I ++  G  ++ +    A+
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 278 NSVEWNPKYN 287
             +       
Sbjct: 246 VGLLRLSDKF 255

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 186 TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 245
           T+  H        +     Y   G+ D ++ ++D      +   +  +  V  + ++H G
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-G 64

Query: 246 DYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN 287
             + S S D  + + ++  G   H      +        +Y 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 106

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 30/260 (11%), Positives = 72/260 (27%), Gaps = 20/260 (7%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIE----------------PHGHG 55
           H  E      +   +        + +GS D T  VW +                      
Sbjct: 88  HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 147

Query: 56  KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT 115
           +     +      +  +     H +++ + S D T+ +WD    KC        + I  T
Sbjct: 148 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST 207

Query: 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175
                    +    D  T + +   +             +   +     FL +      +
Sbjct: 208 IYDHERKRCISASMD--TTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSI 265

Query: 176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEW 234
             + +         H      I    +     V  +++  +++++     V     K   
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 235 PVRTISFSHTGDYIASASED 254
            + +++F      +A+  +D
Sbjct: 326 QIWSVNFKGKT-LVAAVEKD 344

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 15/129 (11%), Positives = 34/129 (26%), Gaps = 1/129 (0%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
                 G             G    S     +A                +   H  ++  
Sbjct: 227 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA 286

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
           +       +++ + S +    +++ RSGK      L   +   +    G  +      D 
Sbjct: 287 ITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDG 345

Query: 132 LTILDVRKF 140
            + L++  F
Sbjct: 346 QSFLEILDF 354

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 2e-08
 Identities = 46/267 (17%), Positives = 81/267 (30%), Gaps = 21/267 (7%)

Query: 9   KNLHSREYTGHKKK-VHSVAW--NCTGTKLASGSVDQTARVWHIEPHGHGKV----KDIE 61
           K     ++TGH    V +V +        L SG       VW                 E
Sbjct: 51  KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 110

Query: 62  LRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120
            +  A  +  + WD +     +     D         SG    +     + IN  +    
Sbjct: 111 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS 170

Query: 121 ------THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174
                 T    G+                   K G  V ++ ++     F +T G+    
Sbjct: 171 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 230

Query: 175 VL----TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
                 +   L+ ++       G          + FA   AD+ + +WD++   CV+ +T
Sbjct: 231 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290

Query: 231 --KLEWPVRTISFSHTGD-YIASASED 254
             K +   + +    TG+  I S S D
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLD 317

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 3e-07
 Identities = 32/318 (10%), Positives = 83/318 (26%), Gaps = 28/318 (8%)

Query: 4   SSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR 63
           SSI  K +   + +  +     ++++ T   +A         V  ++         ++  
Sbjct: 1   SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAF-VRCLDDGDSKVPPVVQFT 59

Query: 64  GH-ADSVDQLCWDPKH-ADLIATASGDKTVRLWDARSGKC---------SQQAELSGENI 112
           GH +  V  + + P   +  + +      V +W     K          S+   L+G   
Sbjct: 60  GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 119

Query: 113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT----- 167
           +I++  +G  + V     +   + +         +       I      +   +      
Sbjct: 120 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 179

Query: 168 --TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW----DIS 221
                   +   +       T     +    +   P    F +                 
Sbjct: 180 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239

Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR-----TVHQIPCRAA 276
            +  +    +                 A+   D  I + +V T +     T+ +      
Sbjct: 240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ 299

Query: 277 MNSVEWNPKYNLLAYAGD 294
              V       +++ + D
Sbjct: 300 QVGVVATGNGRIISLSLD 317

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 3e-06
 Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 5/130 (3%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
             R +      V  V ++    +                  G       + +        
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256

Query: 72  LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT----YKPDGTHIAVGN 127
                  +   AT   D T+R+WD  + KC Q+  L  + +              I   +
Sbjct: 257 ALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 128 RDDELTILDV 137
            D  L   ++
Sbjct: 316 LDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 196 CIAIDPMGRYFAVGSADS-LVSLWDISE--MLCVRTFTK-LEWPVRTISFS--HTGDYIA 249
            ++ DP     A     S  V   D  +  +  V  FT      V T+ FS      Y+ 
Sbjct: 22  HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC 81

Query: 250 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 300
           S  E   + +      +  + +               + +++  + +    
Sbjct: 82  SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 9e-08
 Identities = 38/288 (13%), Positives = 74/288 (25%), Gaps = 18/288 (6%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
           +  +GH K + ++  N     L SGS D     W               + H++ +  L 
Sbjct: 7   KTISGHNKGITALTVN----PLISGSYDGRIMEWSSSS---------MHQDHSNLIVSLD 53

Query: 74  WDPKHADLIAT-ASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
                     +     K   +     G   + A  + +        D   + + +   ++
Sbjct: 54  NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113

Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
                              V            F  +       L  P       +    +
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173

Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASA 251
             Y  A D MG+          V     +           +             D +A+ 
Sbjct: 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233

Query: 252 SEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKN 297
           S D  I I +V     + +     +  +N++ W    + L  +G D  
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADAC 280

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 7e-07
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
                +    +  +         +A+GS+D    ++ ++           L  H D V+ 
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK---RPMKIIKALNAHKDGVNN 263

Query: 72  LCWDPKHADLIATASGDKTVRLWD 95
           L W+      + ++  D  ++ W+
Sbjct: 264 LLWETPS--TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 9e-05
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 53  GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102
           GH +V    + GH   +  L  +P     + + S D  +  W + S    
Sbjct: 1   GHDEVLKT-ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHI 49
           +    HK  V+++ W    T L S   D   + W++
Sbjct: 252 KALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 17/272 (6%), Positives = 55/272 (20%), Gaps = 24/272 (8%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
            ++  +   V ++  +  G      +         +E      ++        D      
Sbjct: 79  EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN 138

Query: 74  WD-----PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR 128
                               + + ++D    K       +  +    +  D  ++   + 
Sbjct: 139 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 198

Query: 129 DDELTILDVRKFKPIHRRKFGY--------EVNEIAWNMTGE-------MFFLTTGNGTV 173
                  D                        N                         + 
Sbjct: 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258

Query: 174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
             +     R +  + +               Y+       ++  +D+      R  T+++
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVK 314

Query: 234 WPVRTISFSHTGDYIASASEDLFIDISNVHTG 265
             +  +  S     +    +D  I    +   
Sbjct: 315 NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.9 bits (112), Expect = 7e-07
 Identities = 3/95 (3%), Positives = 17/95 (17%), Gaps = 9/95 (9%)

Query: 18  GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
                                        + ++          ++    +++  L     
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR--------KVTEVKNNLTDLRLSA- 324

Query: 78  HADLIATASGDKTVRLWDARSGKCSQQAELSGENI 112
               +     D  +  +     +  +  E     +
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 15/174 (8%), Positives = 36/174 (20%), Gaps = 13/174 (7%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHI---EPHGHGKVKDIELRGHADS 68
                T      ++ A++     L   S                     K   +     S
Sbjct: 170 KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 229

Query: 69  VDQLCWDPKHADL----IATASGDKTVRLWDARSGKCSQQAELSGENINITYK---PDGT 121
            +     P+               K     +   G       L    +  +         
Sbjct: 230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 289

Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175
           +         L   DV+  K     +    + ++  +   +   +   +G +  
Sbjct: 290 YYQGAPEKGVLLKYDVKTRKV---TEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 20/301 (6%), Positives = 56/301 (18%), Gaps = 24/301 (7%)

Query: 17  TGHKKKVHSVAWNCTGTKLASGSVDQTARVW-------HIEPHGHGKVKDIELRGHADSV 69
                ++  V               +   +          E           +    +  
Sbjct: 39  VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK 98

Query: 70  DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
             +  + +   +       K   +  +R    +               P       G   
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158

Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV-------LTYPSLR 182
             + + D+   K              A++   +  +  +               ++  + 
Sbjct: 159 QAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS 218

Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW-------DISEMLCVRTFTKLEWP 235
               +           + P       G  D             D  +   +         
Sbjct: 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI 278

Query: 236 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 295
                      Y   A E   +   +V T +       +  +  +  +     +    DD
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVMVRKDD 335

Query: 296 K 296
            
Sbjct: 336 G 336

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.9 bits (104), Expect = 6e-06
 Identities = 23/229 (10%), Positives = 46/229 (20%), Gaps = 22/229 (9%)

Query: 14  REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
            ++T                    G V Q   V+ +E                   D   
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH------DYAP 184

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN--------ITYKPDGTHIAV 125
                +  +   S        D      S +       I             P       
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 126 G-----NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE-MFFLTTGNGTVEVLTYP 179
           G     +     + ++V              +   +  + GE   +         +L Y 
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304

Query: 180 SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228
                  V         + +    +   V   D  +  + + +    RT
Sbjct: 305 VKTR--KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 6/62 (9%), Positives = 21/62 (33%)

Query: 2   GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE 61
            +  +   ++ +R+ T  K  +  +  +     +     D     + +E     +  + +
Sbjct: 296 EKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355

Query: 62  LR 63
            R
Sbjct: 356 KR 357

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.4 bits (114), Expect = 4e-07
 Identities = 25/220 (11%), Positives = 53/220 (24%), Gaps = 21/220 (9%)

Query: 74  WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
            D  +     T      + L D  S K  +  +             G ++ V  RD  + 
Sbjct: 28  LDLPNL-FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARID 86

Query: 134 ILDVRKFKP--IHRRKFGYEVNEIAWNMTG-----EMFFLTTGNGTVEVLTYPSLRPLDT 186
           ++D+   +P  +   K G E   +  +                     ++   +L P   
Sbjct: 87  MIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 146

Query: 187 VVAHTAGCYCIAIDPMGR-------------YFAVGSADSLVSLWDISEMLCVRTFTKLE 233
           V             P  R                V     ++ +          T     
Sbjct: 147 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 206

Query: 234 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC 273
             +    +  +  Y  +A+ +           R +  +  
Sbjct: 207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 246

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.5 bits (96), Expect = 9e-05
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 3/93 (3%)

Query: 197 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 256
             +D    +         ++L D      V+              S +G Y+     D  
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDAR 84

Query: 257 IDISNVHTGR--TVHQIPCRAAMNSVEWNPKYN 287
           ID+ ++       V +I       SVE +    
Sbjct: 85  IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG 117

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 38/239 (15%), Positives = 65/239 (27%), Gaps = 35/239 (14%)

Query: 23  VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADL 81
           VH    + +G  L     D    +  +      KV +I+                +    
Sbjct: 64  VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123

Query: 82  IATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDDELTILDVRKF 140
           IA A       + D  + +  Q     G  ++  TY P+    A+               
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI--------------- 168

Query: 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPL-DTVVAHTAGCYCIAI 199
                         IA +   E        G V ++ Y  +  L  T +           
Sbjct: 169 --------------IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW 214

Query: 200 DPMGRYFAVGSADSLVSLWDISE---MLCVRTFTKLEWPVRTISFSHTGDYIASASEDL 255
           D   RYF   + +S       S+   +  +    K   P R  +F H       ++  L
Sbjct: 215 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.2 bits (113), Expect = 4e-07
 Identities = 23/260 (8%), Positives = 56/260 (21%), Gaps = 27/260 (10%)

Query: 12  HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA----- 66
                          +    G  L          V  ++  G    + +++         
Sbjct: 97  PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT 156

Query: 67  DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ------AELSGENINITYKPDG 120
                       +        + T  +          +      A        +     G
Sbjct: 157 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG 216

Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI-------------AWNMTGEMFFLT 167
               +     +   L   +      R  G+                        + +   
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276

Query: 168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY--FAVGSADSLVSLWDISEMLC 225
           T +  V VL   +   L            I +    +   +A+ + D  + + D      
Sbjct: 277 TASRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335

Query: 226 VRTFTKLEWPVRTISFSHTG 245
           +R+  +L    + I+ +  G
Sbjct: 336 LRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 31/248 (12%), Positives = 58/248 (23%), Gaps = 31/248 (12%)

Query: 82  IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV----------GNRDDE 131
            A  +      + D  +G+     +  G   N     DG+ IA           G R D 
Sbjct: 21  PAHFAAVTQQFVIDGEAGRVIGMID-GGFLPNPVVADDGSFIAHASTVFSRIARGERTDY 79

Query: 132 LTILDVRKFKPI--------HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
           + + D     P          R   G      +    G+   L     +           
Sbjct: 80  VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLE 137

Query: 184 LDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVR------TFTKLEWPV 236
                       C  I P     F +   D  ++                    + E+ +
Sbjct: 138 GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI 197

Query: 237 RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA---AMNSVEWNPKYNLLAYAG 293
              ++S     +   +    I   ++ +G         A   A  +  W P         
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257

Query: 294 DDKNKYQA 301
              ++   
Sbjct: 258 RALDRIYL 265

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 7/121 (5%)

Query: 2   GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE 61
            E +  ++    ++   H+             +    +  +   V   +       + + 
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-----ERLA 294

Query: 62  LRGHADSVDQLCWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPD 119
                  +D +     +   L A ++GDKT+ + DA SG+  +     G     IT    
Sbjct: 295 KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354

Query: 120 G 120
           G
Sbjct: 355 G 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 26/258 (10%), Positives = 61/258 (23%), Gaps = 38/258 (14%)

Query: 78  HADLIATASGDKTVRLWDARSGKC--------SQQAELSGENINITYKPDGTHIAVGNRD 129
               IA       V ++D  +           + +  +       +  PDG  +      
Sbjct: 67  VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 126

Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
               +  V       +R          +    + FF+   +G++  + + +    +    
Sbjct: 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186

Query: 190 HTAGCYC------IAIDPMGRYFAVGSADSLVSLWDIS---------------------- 221
                         A           +    +   D+S                      
Sbjct: 187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 246

Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVE 281
                +         R        D     +   F+ + +  TG  + +      ++S+ 
Sbjct: 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSIN 306

Query: 282 WNP--KYNLLAYAGDDKN 297
            +   K  L A +  DK 
Sbjct: 307 VSQDEKPLLYALSTGDKT 324

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.6 bits (111), Expect = 8e-07
 Identities = 30/205 (14%), Positives = 62/205 (30%), Gaps = 1/205 (0%)

Query: 84  TASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKP 142
             S    + + D  S K +    +    +     PDGT + V N   ++++I+D      
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM 202
           I     G     +A +  G+  ++T    +   +   +   +   V        +A+ P 
Sbjct: 67  IATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD 126

Query: 203 GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 262
           G+   V +          +    V     +    + I+ +  G  +  A+ D        
Sbjct: 127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID 186

Query: 263 HTGRTVHQIPCRAAMNSVEWNPKYN 287
               +V       A  S        
Sbjct: 187 TVTNSVIDTVKVEAAPSGIAVNPEG 211

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 23/202 (11%), Positives = 45/202 (22%), Gaps = 29/202 (14%)

Query: 36  ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95
             G  +++  +          +       H    D   +D K+  L      +  V    
Sbjct: 47  GWGITNESKEILGG---DQQYLNGDCHHPHISMTDGR-YDGKY--LFINDKANTRVARIR 100

Query: 96  ARSGKCSQQAEL--SGENINITYKPDGTHIAVGNRDDE-------------------LTI 134
               K  +   +        +  +       V    +                     T 
Sbjct: 101 LDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA 160

Query: 135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG-TVEVLTYPSLRPLDTVVAHTAG 193
           +D        +      ++    + TG+    T  N      L        D VV     
Sbjct: 161 IDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE 220

Query: 194 CYCIAIDPMGRYFAVGSADSLV 215
               A    G +  +G +   V
Sbjct: 221 -RIAAAVKAGNFKTIGDSKVPV 241

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.76
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.63
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.63
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.62
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.45
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.31
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.23
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.22
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.2
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.15
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.1
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.1
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.07
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.04
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.98
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.93
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.66
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.58
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.43
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.4
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.3
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.2
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.85
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.83
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.64
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.6
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.55
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.99
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.58
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.45
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.1
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.09
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.02
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.96
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.95
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.72
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.62
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.89
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.82
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.92
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.92
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.86
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.15
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.83
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.34
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.9
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.02
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	84.84
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	84.7
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	83.3
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	80.25

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-45  Score=310.45  Aligned_cols=293  Identities=15%  Similarity=0.211  Sum_probs=248.2

Q ss_pred             eeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC-ceeeEEeecCCCCEEEEEEcCCCCCEEEE
Q 021319            6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIAT   84 (314)
Q Consensus         6 ~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s   84 (314)
                      +|......+.+ +|...|++|+|+|+|++|+||+ ||+|+|||+...... ........+|.+.|.+++|+|++ ++|++
T Consensus        38 ~p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s  114 (337)
T d1gxra_          38 IPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIV  114 (337)
T ss_dssp             CCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEE
T ss_pred             CCCCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-CEEEE
Confidence            34444444445 7999999999999999999998 899999999764432 23334556899999999999975 78999


Q ss_pred             EeCCCcEEEEeCCCCcee--eeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccC
Q 021319           85 ASGDKTVRLWDARSGKCS--QQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT  160 (314)
Q Consensus        85 ~~~D~~v~iwd~~~~~~~--~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~  160 (314)
                      |+.|++|++||+......  ..... ......++++|++..+++++.++.+.+||+++.+...... +...+.+++|+++
T Consensus       115 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             EESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999998755433  33332 2345678899999999999999999999999888766543 4567899999999


Q ss_pred             CCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319          161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  240 (314)
                      +..+++++.++.+++|+....+.+..+ .|...+++++|+|++++|++++.|+.+++||+++..... ...|..+|.+++
T Consensus       195 ~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~  272 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLK  272 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEE
T ss_pred             ccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceecccccccccccccccccc-ccccccccceEE
Confidence            999999999999999999887766544 578899999999999999999999999999999887654 457888999999


Q ss_pred             EccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          241 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       241 ~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      |+|++++|++++.|+.|++||..+++.+..+.+...|++++|+|++++||++|.|        |+++||++
T Consensus       273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D--------~~I~vWdl  335 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD--------KKATVYEV  335 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT--------SCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCC--------CeEEEEEE
Confidence            9999999999999999999999999999999888999999999999999999987        57999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-43  Score=293.86  Aligned_cols=286  Identities=22%  Similarity=0.376  Sum_probs=253.5

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ....|.||.+.|++|+|+|++++|+||+.||+|+|||+++..    ....+.+|...|.+++|+|++ .+++++..++.+
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~----~~~~~~~h~~~V~~~~~~~~~-~~~~~~~~~~~~   83 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFDHSG-KLLASCSADMTI   83 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC----CCEEECCCSSCEEEEEECTTS-SEEEEEETTSCC
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC----EEEEEeCCCCcEEEEeeeccc-cccccccccccc
Confidence            345789999999999999999999999999999999997643    234678999999999999974 689999999999


Q ss_pred             EEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcC
Q 021319           92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      .+|+........... .......+.++|+++.+++++.|+.+.+||+++.+.+.... +...+..+++++++..+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN  163 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC
Confidence            999988776554443 34456678899999999999999999999999887776654 4566888999999999999999


Q ss_pred             CceEEEEeCCCCCceeeeeecccceEEEEECCCC--------------------CEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG--------------------RYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--------------------~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                      ++.+++|+....+....+..|...+.+++++|++                    .++++++.|+.|++||+.+++++.++
T Consensus       164 d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  243 (317)
T d1vyhc1         164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  243 (317)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence            9999999999888888888899999999987764                    47899999999999999999999999


Q ss_pred             eecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEe
Q 021319          230 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRI  308 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~  308 (314)
                      .+|..+|.+++|+|++++|++|+.|+.|++||+.+++++..+. |...|++++|+|++++||++|.|        |+++|
T Consensus       244 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D--------g~i~i  315 (317)
T d1vyhc1         244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD--------QTVKV  315 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT--------SEEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC--------CeEEE
Confidence            9999999999999999999999999999999999999998886 57799999999999999999988        68999


Q ss_pred             cc
Q 021319          309 YG  310 (314)
Q Consensus       309 ~~  310 (314)
                      |+
T Consensus       316 Wd  317 (317)
T d1vyhc1         316 WE  317 (317)
T ss_dssp             EC
T ss_pred             eC
Confidence            95

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.5e-42  Score=287.89  Aligned_cols=287  Identities=15%  Similarity=0.206  Sum_probs=242.3

Q ss_pred             ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ...++|.||.+.|++|+|+|++++|+||+.||+|+|||+.+.    .....+.+|..+|.+++|+|++ .++++|+.|+.
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~----~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~  120 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT----NKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNI  120 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT----EEEEEEECSCSCEEEEEECTTS-SEEEEEETTCC
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc----eeEEEEecccccEEeeEeeccc-eeeeeecccce
Confidence            345779999999999999999999999999999999998753    2334678899999999999975 69999999999


Q ss_pred             EEEEeCCCCceee----eEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEE
Q 021319           91 VRLWDARSGKCSQ----QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        91 v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  165 (314)
                      +++|+........    ................+..+.....+.....++......... ......+....+.+....++
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence            9999976554322    222223334444455667788888888888888877655443 33455677888899999999


Q ss_pred             EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee--ecccCeEEEEEcc
Q 021319          166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWPVRTISFSH  243 (314)
Q Consensus       166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~sp  243 (314)
                      ++..++.+++|+....+++..+.+|...|++++|+|++++|++|+.||.|++||+.....+..+.  .+..++.+++|+|
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred             EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC
Confidence            99999999999999998888899999999999999999999999999999999999888776654  3456799999999


Q ss_pred             CCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          244 TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      ++++|++|+.|+.|++||+.+++.+..+. |.++|++|+|+|++++||+||.|        |+++||+
T Consensus       281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~D--------g~v~iWd  340 (340)
T d1tbga_         281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD--------SFLKIWN  340 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT--------SCEEEEC
T ss_pred             CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccC--------CEEEEeC
Confidence            99999999999999999999999998886 57799999999999999999987        6799996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-42  Score=297.42  Aligned_cols=286  Identities=20%  Similarity=0.325  Sum_probs=231.7

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCc--------------eeeEEeecCCCCEEEEEEcCCCCCEEE
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK--------------VKDIELRGHADSVDQLCWDPKHADLIA   83 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~--------------~~~~~~~~h~~~v~~l~~~~~~~~~l~   83 (314)
                      +|.+.|+||+|+|||++|++|+ |++|+||++.+.....              .......+|...|.+++|+|+ +++|+
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~~l~  137 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLA  137 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SSEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC-CCcce
Confidence            6999999999999999999987 8999999986532100              011123467888999999997 47999


Q ss_pred             EEeCCCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEec-cCC
Q 021319           84 TASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN-MTG  161 (314)
Q Consensus        84 s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~  161 (314)
                      +|+.|+.|++||...++....... ...+..+.+++++..+++++.++.+.+||.++...............+.+. +++
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  217 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence            999999999999998887766543 445667999999999999999999999999988777665554444555554 577


Q ss_pred             CeEEEEcCCceEEEEeCCCCCceeee-------eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE---------
Q 021319          162 EMFFLTTGNGTVEVLTYPSLRPLDTV-------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---------  225 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~---------  225 (314)
                      ..+++++.++.+++|+.........+       .+|...|++++|+|++++|++++.||.|++||+.+...         
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  297 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  297 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred             CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccc
Confidence            88999999999999998776554432       35788999999999999999999999999999875432         


Q ss_pred             ---EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeE------EcCCCCeeEEEecC
Q 021319          226 ---VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVE------WNPKYNLLAYAGDD  295 (314)
Q Consensus       226 ---~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~------~~~~~~~la~~~~d  295 (314)
                         ......|...|.+++|+|++++|++|+.|+.|++||+.+++++..+. |.+.|.+++      |+|++++||+||.|
T Consensus       298 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~D  377 (388)
T d1erja_         298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD  377 (388)
T ss_dssp             -CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT
T ss_pred             cceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCC
Confidence               33445677889999999999999999999999999999999998886 567788776      56789999999987


Q ss_pred             CcccccccceEEeccccC
Q 021319          296 KNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~  313 (314)
                              |++|||++++
T Consensus       378 --------g~I~iW~~~k  387 (388)
T d1erja_         378 --------CKARIWKYKK  387 (388)
T ss_dssp             --------SEEEEEEEEE
T ss_pred             --------CEEEEEeeee
Confidence                    6899999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-41  Score=288.31  Aligned_cols=282  Identities=15%  Similarity=0.227  Sum_probs=224.5

Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319           19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS   98 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~   98 (314)
                      +.++|+|++|+|||++||+|+.|+.|+||+++...  ......+.+|.++|.+++|+|++ ++|++|+.|++|++||+.+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~--~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC--EEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeecc
Confidence            35789999999999999999999999999986532  22345678999999999999974 7999999999999999987


Q ss_pred             CceeeeEEe---cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee---e--eccCcceeeEEeccCCCeEEEEcCC
Q 021319           99 GKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---R--RKFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        99 ~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      +........   ...+.+++|+|+++.+++++.++.+.+|++.......   .  ..+...+.+++|+|++..+++++.+
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence            765544433   3456789999999999999999999999876543221   1  1234578899999999999999999


Q ss_pred             ceEEEEeCCCC------------------CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec
Q 021319          171 GTVEVLTYPSL------------------RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (314)
Q Consensus       171 g~~~~~~~~~~------------------~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~  232 (314)
                      +.+++|+....                  +.+.....|...+++++|+|++++|++++.|+.|++||+.++.++..+..+
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  242 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE  242 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecc
Confidence            99999986432                  123334567888999999999999999999999999999999999999999


Q ss_pred             ccCeEEEEEccCCcEEEEecCCceEEE--EECCCCCeEEE--------E-------------------------------
Q 021319          233 EWPVRTISFSHTGDYIASASEDLFIDI--SNVHTGRTVHQ--------I-------------------------------  271 (314)
Q Consensus       233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v--~~~~~~~~~~~--------~-------------------------------  271 (314)
                      ..+|.+++|+|++++|++|+ |+.+.+  |+...++....        .                               
T Consensus       243 ~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (371)
T d1k8kc_         243 TLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD  321 (371)
T ss_dssp             SCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred             cccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceec
Confidence            99999999999999998776 555444  44433221100        0                               


Q ss_pred             -eccCccceeEEcCCC----CeeEEEecCCcccccccceEEecccc
Q 021319          272 -PCRAAMNSVEWNPKY----NLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       272 -~~~~~i~~v~~~~~~----~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                       .|.+.|+++++.|.+    ..|+|+|.|        |.+|||+++
T Consensus       322 ~~H~~~I~~i~~~~~~~~~~~~~~T~g~D--------g~v~iW~~~  359 (371)
T d1k8kc_         322 SLHKNSVSQISVLSGGKAKCSQFCTTGMD--------GGMSIWDVR  359 (371)
T ss_dssp             SSSSSCEEEEEEEESTTTSCSEEEEEETT--------SEEEEEEHH
T ss_pred             ccccCCEEEEEEeCCCCcceEEEEEEcCC--------CeEEEEeCC
Confidence             034568899998754    358999977        689999984

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-40  Score=276.65  Aligned_cols=283  Identities=17%  Similarity=0.216  Sum_probs=224.3

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+.||.++|++|+|+|++++|+||+.||+|++||+++..   .......+|...|.+++|+|++ . +++++.|+.+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~---~~~~~~~~h~~~v~~v~~~~~g-~-~~~~~~d~~v   78 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI---SNRVFPDVHATMITGIKTTSKG-D-LFTVSWDDHL   78 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEECSSCSCSSCEEEEEECTTS-C-EEEEETTTEE
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc---EEEEEcCCCCCcEEEEEeeccc-e-eecccceeeE
Confidence            457889999999999999999999999999999999997532   2222235799999999999974 3 5678899999


Q ss_pred             EEEeCCCCcee----eeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319           92 RLWDARSGKCS----QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        92 ~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      ++|+.......    ...........++++|++..++++. ++.+.+|+....   ..........+++++|+++.++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL---TEVPISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE---EEEECSSCEEEEEECTTSCEEEEE
T ss_pred             EEeccCCccccccccccccccccccccccccccccccccc-cccccccccccc---cccccccccccccccccccccccc
Confidence            99997654321    1223445667899999998777665 568999986542   223345567889999999999999


Q ss_pred             cCCceEEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE---EEeeecccCeEEEEEcc
Q 021319          168 TGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV---RTFTKLEWPVRTISFSH  243 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~sp  243 (314)
                      +.++.+.+|++...+... ....|...|++++|+|++++|++++.|+.|++||+.+...+   ..+..|..+|.+++|+|
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999987655332 34578899999999999999999999999999999876543   34556788999999999


Q ss_pred             CCcEEEEecCCceEEEEECCCCCeEEEEe----ccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          244 TGDYIASASEDLFIDISNVHTGRTVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~----~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ++++|++|+.|+.|++||+.++.......    +...++++.|. ++.+|+++|.|        |++|||++.
T Consensus       235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~s~D--------~~i~iWdl~  298 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQD--------SNIKFWNVP  298 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-ETTEEEEEETT--------SCEEEEECC
T ss_pred             cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC-CCCEEEEEeCC--------CEEEEEecc
Confidence            99999999999999999998865443322    23457777665 56789999977        689999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4e-40  Score=275.72  Aligned_cols=281  Identities=17%  Similarity=0.158  Sum_probs=232.5

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      .+++.+..++++|+|+.|+.+. ++.|.+|+++...    ....+.+|...|.+++|+|+ +++|++|+.|++|++||+.
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~----~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~   88 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT----DTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTT   88 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS----CCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESS
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCc----eeEEEcCCCCCEEEEEEeCC-CCeEeccccCceEeeeeee
Confidence            4566777899999999999986 5679999997532    22346799999999999997 5799999999999999998


Q ss_pred             CCceeee--EE-ecCceEEEEEccCCCEEEEEeCC--CcEEEEEccCCeEeeeec-cCcceeeEEeccCCCe-EEEEcCC
Q 021319           98 SGKCSQQ--AE-LSGENINITYKPDGTHIAVGNRD--DELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEM-FFLTTGN  170 (314)
Q Consensus        98 ~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~  170 (314)
                      ++.....  .. ....+.+++|+|+++.+++++.+  ..+.+|++.+.++..... +...+.+++|+|+++. +++++.+
T Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d  168 (311)
T d1nr0a1          89 QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD  168 (311)
T ss_dssp             STTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             ccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            8765433  22 34566789999999999988764  559999998877766543 3456899999999886 6678899


Q ss_pred             ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-------ecccCeEEEEEcc
Q 021319          171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-------KLEWPVRTISFSH  243 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~sp  243 (314)
                      +.+++|+.+..+....+..|...|++++++|+++++++++.|+.|++||+.++..+..+.       +|..+|.+++|+|
T Consensus       169 ~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~  248 (311)
T d1nr0a1         169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  248 (311)
T ss_dssp             SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            999999999988888888999999999999999999999999999999999887776654       3667899999999


Q ss_pred             CCcEEEEecCCceEEEEECCCCCeEEEEeccCc--cceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          244 TGDYIASASEDLFIDISNVHTGRTVHQIPCRAA--MNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~--i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ++++|++|+.|+.|+|||+.+++.++.+.....  ...+.+.+++..|++++.|        |.+++|+.|
T Consensus       249 ~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~d--------G~i~~wd~d  311 (311)
T d1nr0a1         249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN--------GFINFVNPE  311 (311)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT--------CCEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECC--------CEEEEEeCC
Confidence            999999999999999999999999988865332  2334444556678999977        689999975

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-38  Score=264.41  Aligned_cols=285  Identities=18%  Similarity=0.290  Sum_probs=224.2

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.|.||.+.|.+ +++++|++|+|||.||+|+|||+.+..    ....+.+|...|.+++|+|   ++|++|+.|+++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~----~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~   79 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK----CLRTLVGHTGGVWSSQMRD---NIIISGSTDRTL   79 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC----EEEECCCCSSCEEEEEEET---TEEEEEETTSCE
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC----EEEEEeCCCCCEEEEEeCC---Cccccceecccc
Confidence            45778999998865 366789999999999999999997532    3346789999999999986   489999999999


Q ss_pred             EEEeCCCCceeeeEEecCce---------------------------------------EEEEEccCCCEEEEEeCCCcE
Q 021319           92 RLWDARSGKCSQQAELSGEN---------------------------------------INITYKPDGTHIAVGNRDDEL  132 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~d~~i  132 (314)
                      ++|+................                                       ......+....++.++.++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence            99998765432211100000                                       011223455678888899999


Q ss_pred             EEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC
Q 021319          133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD  212 (314)
Q Consensus       133 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d  212 (314)
                      ++||++..+.+..... .......+.+++..+++++.+|.+++|+....+.+..+..|...+.+++++  +++|++++.|
T Consensus       160 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d  236 (342)
T d2ovrb2         160 KVWDPETETCLHTLQG-HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD  236 (342)
T ss_dssp             EEEEGGGTEEEEEECC-CSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred             EEeecccceeeEEEcC-cccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCC
Confidence            9999988877665432 233445567788999999999999999999988888888999999888876  4699999999


Q ss_pred             CeEEEeeCCCcEEEEEeeec---ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe------ccCccceeEEc
Q 021319          213 SLVSLWDISEMLCVRTFTKL---EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP------CRAAMNSVEWN  283 (314)
Q Consensus       213 g~i~vwd~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~------~~~~i~~v~~~  283 (314)
                      |.|++||+...+....+..+   ...+.++++  +++++++|+.||.|++||+.+++.++.+.      +.+.|++++|+
T Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s  314 (342)
T d2ovrb2         237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS  314 (342)
T ss_dssp             SCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred             CEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEEC
Confidence            99999999988777776543   344555554  56799999999999999999999988874      24579999999


Q ss_pred             CCCCeeEEEecCCcccccccceEEeccccC
Q 021319          284 PKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       284 ~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      |++.+||+|+.|+.    ++..++||+|+.
T Consensus       315 ~~~~~la~g~~dGt----~~~~l~~~Df~~  340 (342)
T d2ovrb2         315 NTKLVCAVGSRNGT----EETKLLVLDFDV  340 (342)
T ss_dssp             SSEEEEEEECSSSS----SCCEEEEEECCC
T ss_pred             CCCCEEEEEeCCCC----CeeEEEEEeCCC
Confidence            99999999999875    345699999975

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-37  Score=261.11  Aligned_cols=244  Identities=18%  Similarity=0.270  Sum_probs=215.6

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL   93 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i   93 (314)
                      ....+|.+.|.+++|+|++++|++|+.|++|++||+....  ......+.+|...+..++|+|++ .++++++.|+.|++
T Consensus        91 ~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~  167 (337)
T d1gxra_          91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAV  167 (337)
T ss_dssp             EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred             eeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc--ccccccccccccccccccccccc-cccccccccccccc
Confidence            3456899999999999999999999999999999986532  23345678899999999999974 68999999999999


Q ss_pred             EeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCce
Q 021319           94 WDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT  172 (314)
Q Consensus        94 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  172 (314)
                      ||+.++++...... ...+.+++|++++..+++++.|+.+.+||+++.+.+....+...+.+++|+|+++.+++++.++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~  247 (337)
T d1gxra_         168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccc
Confidence            99999887665543 45567899999999999999999999999999999888888889999999999999999999999


Q ss_pred             EEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEec
Q 021319          173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS  252 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s  252 (314)
                      +++|+....+.. ....|...|++++|+|++++|++++.||.|++||..+++++..+ .|..+|.+++|+|++++|++|+
T Consensus       248 i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s  325 (337)
T d1gxra_         248 VEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGS  325 (337)
T ss_dssp             EEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEE
T ss_pred             cccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEe
Confidence            999999776643 45678899999999999999999999999999999999888775 4677899999999999999999


Q ss_pred             CCceEEEEEC
Q 021319          253 EDLFIDISNV  262 (314)
Q Consensus       253 ~d~~v~v~~~  262 (314)
                      .|+.|+|||+
T Consensus       326 ~D~~I~vWdl  335 (337)
T d1gxra_         326 GDKKATVYEV  335 (337)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-37  Score=258.73  Aligned_cols=249  Identities=20%  Similarity=0.312  Sum_probs=207.7

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC--CC
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG--DK   89 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--D~   89 (314)
                      ..+.+.+|.+.|++++|+|+|++|++|+.||+|+||++....  ......+.+|..+|.+++|+|++ .++++++.  +.
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~  126 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT--HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRER  126 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT--CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSC
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc--cccccccccccCccccccccccc-cccccccccccc
Confidence            445678999999999999999999999999999999997643  23345678999999999999975 67777775  56


Q ss_pred             cEEEEeCCCCceeeeEEec-CceEEEEEccCCCE-EEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEE
Q 021319           90 TVRLWDARSGKCSQQAELS-GENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  166 (314)
                      .+++|++.+++....+..+ ..+.+++|+|++++ +++|+.|+.|++||+++.+...... +..++.++.|+|+++.+++
T Consensus       127 ~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~  206 (311)
T d1nr0a1         127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS  206 (311)
T ss_dssp             SEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccc
Confidence            6999999988776655443 44668999999885 7789999999999999988776654 4678999999999999999


Q ss_pred             EcCCceEEEEeCCCCCceeee-------eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc-CeEE
Q 021319          167 TTGNGTVEVLTYPSLRPLDTV-------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW-PVRT  238 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~  238 (314)
                      ++.++.+.+|+....+....+       .+|...|++++|+|++++|++|+.||.|++||++++++++++..+.. ....
T Consensus       207 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~  286 (311)
T d1nr0a1         207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ  286 (311)
T ss_dssp             EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceE
Confidence            999999999998776554433       35888999999999999999999999999999999999988876532 3344


Q ss_pred             EEEccCCcEEEEecCCceEEEEECC
Q 021319          239 ISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      +++.|++++|++++.||.|++||.+
T Consensus       287 ~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         287 LGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEEecCCEEEEEECCCEEEEEeCC
Confidence            5566677889999999999999963

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-36  Score=256.65  Aligned_cols=281  Identities=19%  Similarity=0.276  Sum_probs=222.3

Q ss_pred             ceeeecccccE-EEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           13 SREYTGHKKKV-HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        13 ~~~~~gH~~~V-~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+|.||.+.| +|++|  ++++|+||+.|++|+|||+.+.    .....+.+|.++|.+++|+|+  ++|++|+.|++|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~----~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i   76 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTV   76 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT----EEEEEEECCSSCEEEEEEETT--TEEEEEETTCCE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC----cEEEEEECCCCCEEEEEEcCC--CEEEEEeccccc
Confidence            34588998875 66654  6889999999999999998753    234568899999999999984  589999999999


Q ss_pred             EEEeCCCCceeeeEEecCce---EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--------------------
Q 021319           92 RLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--------------------  148 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------------  148 (314)
                      ++|+.....+..........   ....+.+++..+++++.|+.+++||++..........                    
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence            99999988766554433322   3456778999999999999999999976543321110                    


Q ss_pred             --CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE
Q 021319          149 --GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV  226 (314)
Q Consensus       149 --~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~  226 (314)
                        ........+.++++.++.+..++.+.+|+....+.+....++...+.++.++|++.++++++.|+.|++||+.++.++
T Consensus       157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEE
T ss_pred             eeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccc
Confidence              001122345667889999999999999999888888778888889999999999999999999999999999999999


Q ss_pred             EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccce-eEEcCCCCeeEEEecCCcccccccce
Q 021319          227 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS-VEWNPKYNLLAYAGDDKNKYQADEGV  305 (314)
Q Consensus       227 ~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~-v~~~~~~~~la~~~~d~~~~~~~~~~  305 (314)
                      ..+.+|..+|.+++|+|  ++|++|+.|+.|++||+.++.......+ ..+.+ ..|+|++.+|++++ |        |+
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~-d--------~~  304 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHH-TNLSAITTFYVSDNILVSGS-E--------NQ  304 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEEC-TTCCCCCEEEECSSEEEEEE-T--------TE
T ss_pred             ccccccccccccccccc--ceeeeeecccccccccccccceeccccc-CCceEEEEEcCCCCEEEEEe-C--------CE
Confidence            99999999999999864  7999999999999999998877666554 44444 46777887776654 5        57


Q ss_pred             EEeccccC
Q 021319          306 FRIYGFEN  313 (314)
Q Consensus       306 ~~~~~~~~  313 (314)
                      ++||+++.
T Consensus       305 i~vwd~~t  312 (355)
T d1nexb2         305 FNIYNLRS  312 (355)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            99999853

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.6e-37  Score=252.24  Aligned_cols=267  Identities=19%  Similarity=0.243  Sum_probs=212.6

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..++|.||.++|++|+|+|    |+||+.||+|++||+..         ...+|...|.++.+.+.  ..+++++.|+++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~---------~~~~h~~~V~~~~~~~~--~~~~s~s~D~~v   69 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS---------MHQDHSNLIVSLDNSKA--QEYSSISWDDTL   69 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE---------EECCCCSCEEEEECCST--TCCEEEETTTEE
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC---------CCCCCCCCEEEEEecCC--CeEEEEeecccc
Confidence            3568899999999999998    99999999999998753         23589999999999864  467899999999


Q ss_pred             EEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCc
Q 021319           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG  171 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  171 (314)
                      ++|++...      .....+..+.+.+++..++++ .++.+.+|+..+.+.+.......+.  .++++.+..+++++.++
T Consensus        70 ~~w~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~  140 (287)
T d1pgua2          70 KVNGITKH------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEG  140 (287)
T ss_dssp             EETTEEEE------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTT
T ss_pred             cccccccc------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccccee--eeeeccCcceeeecccc
Confidence            99987532      234455667788877666654 5667889998888777766655443  45677888888877764


Q ss_pred             -eEEEEeCCCCCceeee-eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE-EeeecccCeEEEEEccC----
Q 021319          172 -TVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHT----  244 (314)
Q Consensus       172 -~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~sp~----  244 (314)
                       .+++|+....+....+ ..|...+++++|+|++++|++|+.||.|++||+.++..+. .+..|..+|.+++|+|.    
T Consensus       141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             ceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccc
Confidence             7899998655443333 3467789999999999999999999999999999887654 45678889999999875    


Q ss_pred             ------CcEEEEecCCceEEEEECCCCC-eEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319          245 ------GDYIASASEDLFIDISNVHTGR-TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       245 ------~~~l~s~s~d~~v~v~~~~~~~-~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                            +.+|+||+.|+.|++||+.++. .+..+. |...|++|+|+|++ .|+++|.|        |++|||++
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D--------~~v~iW~i  286 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD--------ACIKRWNV  286 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETT--------SCEEEEEE
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC--------CeEEEEEE
Confidence                  4689999999999999998744 444432 57789999999986 57889977        68999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-36  Score=253.28  Aligned_cols=283  Identities=14%  Similarity=0.092  Sum_probs=215.7

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      ++.+.+|++.|++|+|+|++++|+||+.||+|||||++..... .......+|..+|.+++|+|.++.+|++|+.|++|+
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~-~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-eEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            4567899999999999999999999999999999999764322 222334579999999999988777899999999999


Q ss_pred             EEeCCCCceeeeEEec--CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee----ee---ccCcceeeEEeccCCCe
Q 021319           93 LWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH----RR---KFGYEVNEIAWNMTGEM  163 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~---~~~~~~~~~~~~~~~~~  163 (314)
                      +|+...+.........  .......+.++...+++++.++.+.+||++......    ..   ..........+.+.+..
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            9999877655443322  223345566788899999999999999986532211    11   11223345567788899


Q ss_pred             EEEEcCCceEEEEeCCCCCceeee---eecccceEEEEECC-CCCEEEEeeCCCeEEEeeCCCcEE---------EEE--
Q 021319          164 FFLTTGNGTVEVLTYPSLRPLDTV---VAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLC---------VRT--  228 (314)
Q Consensus       164 ~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~i~~i~~~~-~~~~l~t~~~dg~i~vwd~~~~~~---------~~~--  228 (314)
                      ++.+..++.+++|++...+.....   ..+.....+..+.+ ++..+++++.||.+.+|+......         ...  
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeee
Confidence            999999999999998765543332   23344455655554 677899999999999998754311         111  


Q ss_pred             ----eeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319          229 ----FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       229 ----~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                          ...+..++.+++|+|++++||||+.||.|++||+.+++.+.+++....+..++|+|++++||+++.|.
T Consensus       243 ~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT
T ss_pred             eccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCC
Confidence                12355678999999999999999999999999999999998887656777889999999999988774

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-35  Score=246.30  Aligned_cols=281  Identities=15%  Similarity=0.171  Sum_probs=217.0

Q ss_pred             ccEEEEEECCCCCEEEEeeCCC-cEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCC-CCCEEEEEeCCCcEEEEeCC
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQ-TARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPK-HADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~-~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~-~~~~l~s~~~D~~v~iwd~~   97 (314)
                      +.+++++|+|+++.|+.++.+. .|+.|+......  .....+.+|. ..|.+++|+|. ++.+|++|+.||+|++||+.
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~--~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~   95 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV--PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT   95 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS--CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc--cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec
Confidence            3567899999999999886554 466776543222  2234567774 67999999985 45799999999999999987


Q ss_pred             CCceeeeEE---------ecCceEEEEEccCCCEEEEEeC--CCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCe-E
Q 021319           98 SGKCSQQAE---------LSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEM-F  164 (314)
Q Consensus        98 ~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~  164 (314)
                      .++......         ..+.+..++|+++++.+++++.  ++.+.+|+..+.+.+.... +...+.+++|++.++. +
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  175 (325)
T d1pgua1          96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS  175 (325)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred             CCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceE
Confidence            654332211         2345668999999999987764  6679999998887776654 5677899999999876 5


Q ss_pred             EEEcCCceEEEEeCCCCCceeee---eecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319          165 FLTTGNGTVEVLTYPSLRPLDTV---VAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  240 (314)
                      ++++.++.+++|+....+.....   ..|...|++++|+|+ +.++++++.|+.|++||++++++++++.+|..++..+.
T Consensus       176 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~  255 (325)
T d1pgua1         176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI  255 (325)
T ss_dssp             EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred             EEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccce
Confidence            56788999999998776544333   356778999999996 68899999999999999999999999998888777666


Q ss_pred             Ec---cCCcEEEEecCCceEEEEECCCCCeEEEEecc-C--ccceeEEcCC-CCeeEEEecCCcccccccceEEeccc
Q 021319          241 FS---HTGDYIASASEDLFIDISNVHTGRTVHQIPCR-A--AMNSVEWNPK-YNLLAYAGDDKNKYQADEGVFRIYGF  311 (314)
Q Consensus       241 ~s---p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~-~--~i~~v~~~~~-~~~la~~~~d~~~~~~~~~~~~~~~~  311 (314)
                      |+   |++++|++++.|+.|+|||+.+++.+..+... .  .+..++|.+. ...|+++|.|        |+++||++
T Consensus       256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--------g~i~vwdl  325 (325)
T d1pgua1         256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD--------GTLNFYEL  325 (325)
T ss_dssp             EEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT--------SCEEEEET
T ss_pred             eeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC--------CEEEEEEC
Confidence            66   78999999999999999999999988877532 2  2444444432 3477889977        68899986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-35  Score=249.66  Aligned_cols=243  Identities=23%  Similarity=0.340  Sum_probs=205.5

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      ..+|...|++|+|+|+|++|++|+.||.|++|+....    .......+|...|.++.+++. +..+++++.++.+++||
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~i~~~d  191 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWD  191 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEE
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccc----ccccccccccccccccccccc-cccccccccceeeeeee
Confidence            4578889999999999999999999999999998652    234457789999999999987 46888999999999999


Q ss_pred             CCCCceeeeEEecCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeeec--------cCcceeeEEeccCCCeEEE
Q 021319           96 ARSGKCSQQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRK--------FGYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  166 (314)
                      ..+...............+.+.+ ++++|++++.|+.+.+||.++........        +...+.++.|+|+++.+++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  271 (388)
T d1erja_         192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  271 (388)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence            99888777766666666666655 78999999999999999998877655433        2346889999999999999


Q ss_pred             EcCCceEEEEeCCCCCc------------eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc
Q 021319          167 TTGNGTVEVLTYPSLRP------------LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW  234 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~------------~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~  234 (314)
                      ++.++.+++|++...+.            ......|...+++++|+|++++|++|+.||.|++||+.+++++.++++|..
T Consensus       272 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC
Confidence            99999999999764322            233456788899999999999999999999999999999999999999999


Q ss_pred             CeEEEE------EccCCcEEEEecCCceEEEEECC
Q 021319          235 PVRTIS------FSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       235 ~v~~~~------~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      +|.+++      |+|++.+|||||.|+.|+||++.
T Consensus       352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999987      46799999999999999999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=230.77  Aligned_cols=273  Identities=21%  Similarity=0.320  Sum_probs=214.4

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      +++.+.+|...|+|++|  ||++|+||+.||+|+|||+++..    ....+.+|.++|.+++|+   +++|++|+.|+.|
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~----~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i   77 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE----CKRILTGHTGSVLCLQYD---ERVIITGSSDSTV   77 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC----EEEEECCCSSCEEEEECC---SSEEEEEETTSCE
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc----EEEEEecCCCCEeeeecc---cceeecccccccc
Confidence            34456788899999764  79999999999999999997532    344678999999999885   3689999999999


Q ss_pred             EEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee----ccCcceeeEEeccCCCeEEEE
Q 021319           92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      ++|++..+........... ......+....++++..++.+.+||..........    .+...+...  .+....++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~  154 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCE-AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DFDDKYIVSA  154 (293)
T ss_dssp             EEEESSSCCEEEEECCCCS-CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE--EEETTEEEEE
T ss_pred             ccccccccccccccccccc-ccccccccccceeecccccceeEeeccccccccccccccccccccccc--eecccccccc
Confidence            9999998876555443332 33445567778999999999999998765432221    122333333  3455678888


Q ss_pred             cCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE
Q 021319          168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY  247 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~  247 (314)
                      +.++.+++|+....+.+..+.++...+..+.++  +.++++++.||.|++||+++...+..+..+...+..  +++++.+
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~  230 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKR  230 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSE
T ss_pred             cCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceE
Confidence            999999999999988888888888888887775  568999999999999999999998888888777664  5678899


Q ss_pred             EEEecCCceEEEEECCC---------CCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          248 IASASEDLFIDISNVHT---------GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       248 l~s~s~d~~v~v~~~~~---------~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      |++|+.|+.|++||+.+         ...+..+. |.+.|++|+|+  +.+|+++|.|        |++|||+
T Consensus       231 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~D--------g~i~iWD  293 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHD--------DTILIWD  293 (293)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSS--------SEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecC--------CEEEEeC
Confidence            99999999999999643         23444543 56789999995  4679999987        6899997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-34  Score=241.75  Aligned_cols=284  Identities=19%  Similarity=0.260  Sum_probs=214.1

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+.+|.+.|++|+|+|+ .+|+||+.|++|++|+.....  .........+........+.++ ...+++++.|+.|
T Consensus        45 ~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i  120 (355)
T d1nexb2          45 FLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTL  120 (355)
T ss_dssp             EEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTE--EEEEECCCSSCEEEEEEEEETT-EEEEEEEETTSEE
T ss_pred             EEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccc--cccccccccccccccccccccc-cceeeeecCCCcE
Confidence            34667899999999999985 589999999999999986532  1111122223333445566665 4688999999999


Q ss_pred             EEEeCCCCceeeeEEec----------------------CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-c
Q 021319           92 RLWDARSGKCSQQAELS----------------------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-F  148 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~  148 (314)
                      ++||+.+..........                      .......+.++++.++.+..|+.+.+||+++.+.+.... .
T Consensus       121 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  200 (355)
T d1nexb2         121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH  200 (355)
T ss_dssp             EEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecc
Confidence            99999876543211100                      001113456788999999999999999999988776654 4


Q ss_pred             CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE
Q 021319          149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT  228 (314)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~  228 (314)
                      ........+++.+..++++..++.+++|+......+..+.+|...+.+++++  +++|++|+.||.|++||+.+....  
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--  276 (355)
T d1nexb2         201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--  276 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--
T ss_pred             ccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee--
Confidence            4567888999999999999999999999999988888899999999999997  469999999999999999887654  


Q ss_pred             eeecccCeEEE-EEccCCcEEEEecCCceEEEEECCCCCeEEEE--eccCccceeEEcCCCCeeEEEecCCcccccccce
Q 021319          229 FTKLEWPVRTI-SFSHTGDYIASASEDLFIDISNVHTGRTVHQI--PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV  305 (314)
Q Consensus       229 ~~~~~~~v~~~-~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~--~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~  305 (314)
                      +..|...+.++ .++|++.+|++|+ |+.|++||+.+++.++..  .+..+|.+|+|+|+ .++++++.|+..|      
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~------  348 (355)
T d1nexb2         277 FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF------  348 (355)
T ss_dssp             EEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEE------
T ss_pred             cccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEE------
Confidence            34455555554 5677888777665 889999999999987542  35678999999996 5788888886533      


Q ss_pred             EEeccc
Q 021319          306 FRIYGF  311 (314)
Q Consensus       306 ~~~~~~  311 (314)
                      +++|+|
T Consensus       349 l~~~df  354 (355)
T d1nexb2         349 LEILDF  354 (355)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            667776

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-33  Score=231.36  Aligned_cols=245  Identities=22%  Similarity=0.373  Sum_probs=213.4

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV   91 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v   91 (314)
                      ..+.+.+|.+.|.+++|+|++.++++++.++.+.+|+.....    ....+.+|...+.++.++|++ +.+++++.|+.+
T Consensus        51 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~  125 (317)
T d1vyhc1          51 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTI  125 (317)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC----EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEE
T ss_pred             EEEEEeCCCCcEEEEeeecccccccccccccccccccccccc----cccccccccccceeeeccCCC-ceEEeeccCcce
Confidence            346688999999999999999999999999999999876432    334567899999999999975 688999999999


Q ss_pred             EEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccC---------
Q 021319           92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT---------  160 (314)
Q Consensus        92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~---------  160 (314)
                      ++||+++++........ .....++++|+++++++++.|+.+.+|++++.+.+.... +...+..+.+++.         
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  205 (317)
T d1vyhc1         126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA  205 (317)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             eEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeecc
Confidence            99999999877766543 445678999999999999999999999999887765543 3344555555544         


Q ss_pred             -----------CCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          161 -----------GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       161 -----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                                 +..+++++.++.+++|+....+++..+.+|...+.+++++|++++|++|+.||.|++||+.+++++.++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  285 (317)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             ccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence                       456788899999999999999989999999999999999999999999999999999999999999999


Q ss_pred             eecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319          230 TKLEWPVRTISFSHTGDYIASASEDLFIDISN  261 (314)
Q Consensus       230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~  261 (314)
                      .+|..+|.+++|+|++++|+||+.|+.|++||
T Consensus       286 ~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         286 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-34  Score=247.17  Aligned_cols=278  Identities=15%  Similarity=0.178  Sum_probs=201.9

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC--ceeeEEeecCCCCEEEE------EEcCCCCCEEEEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQL------CWDPKHADLIATA   85 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~--~~~~~~~~~h~~~v~~l------~~~~~~~~~l~s~   85 (314)
                      ....+|.+.|.+|++++  ++|+|||.|++|||||.......  .........|...+..+      ........+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            34579999999999864  69999999999999997543321  11222333455443322      2222223478899


Q ss_pred             eCCCcEEEEeCCCCceeeeE---E--------ecCceEEEEEccC-----CCEEEEEeCCCcEEEEEccCCeE-------
Q 021319           86 SGDKTVRLWDARSGKCSQQA---E--------LSGENINITYKPD-----GTHIAVGNRDDELTILDVRKFKP-------  142 (314)
Q Consensus        86 ~~D~~v~iwd~~~~~~~~~~---~--------~~~~~~~~~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~-------  142 (314)
                      +.|+.|++|+..........   .        .......+++.++     +.++++++.|+.+.+|++.....       
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            99999999987544321111   1        1123345556554     46889999999999999853211       


Q ss_pred             -------e-ee----eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceee------eeecccceEEEEECCCCC
Q 021319          143 -------I-HR----RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT------VVAHTAGCYCIAIDPMGR  204 (314)
Q Consensus       143 -------~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~i~~i~~~~~~~  204 (314)
                             . ..    ......+.+++|+|++ .+++++.|+.+++|++...+++..      +.+|...|++++|+|+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence                   0 00    1112346789999987 788999999999999987665543      346889999999999999


Q ss_pred             EEEEeeCCC---eEEEeeCCCcEEEEEee-------------ecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeE
Q 021319          205 YFAVGSADS---LVSLWDISEMLCVRTFT-------------KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV  268 (314)
Q Consensus       205 ~l~t~~~dg---~i~vwd~~~~~~~~~~~-------------~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~  268 (314)
                      +|++|+.|+   .|++||+.++.++..+.             +|...|.+++|+|++++|+|||.|+.|++||+.+++.+
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence            999999887   49999999888777663             68888999999999999999999999999999999999


Q ss_pred             EEEe-ccCcc----ceeEEcCCCCeeEEEec
Q 021319          269 HQIP-CRAAM----NSVEWNPKYNLLAYAGD  294 (314)
Q Consensus       269 ~~~~-~~~~i----~~v~~~~~~~~la~~~~  294 (314)
                      ..+. |...|    ..++|+|++..+++++.
T Consensus       325 ~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~  355 (393)
T d1sq9a_         325 TTLNMHCDDIEIEEDILAVDEHGDSLAEPGV  355 (393)
T ss_dssp             EEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred             EEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence            8876 33444    35788888877766553

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-33  Score=240.09  Aligned_cols=229  Identities=14%  Similarity=0.200  Sum_probs=191.1

Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe---cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE
Q 021319           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKP  142 (314)
Q Consensus        66 ~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  142 (314)
                      .++|++++|+|++ .+|++|+.|+.|++||..+++......+   ...+.+++|+|++++|++++.|+.+++||+.....
T Consensus         7 ~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            4789999999975 7999999999999999987764443332   35677899999999999999999999999987654


Q ss_pred             eeee---ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCcee----eeeecccceEEEEECCCCCEEEEeeCCCeE
Q 021319          143 IHRR---KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD----TVVAHTAGCYCIAIDPMGRYFAVGSADSLV  215 (314)
Q Consensus       143 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i  215 (314)
                      ....   .+...+.++.|+|+++.+++++.++.+++|++.......    ....|...|++++|+|++++||+|+.|+.|
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            4332   335678999999999999999999999999876554332    233578889999999999999999999999


Q ss_pred             EEeeCCC------------------cEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCc
Q 021319          216 SLWDISE------------------MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAA  276 (314)
Q Consensus       216 ~vwd~~~------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~  276 (314)
                      ++||+..                  +..+.....|...|.+++|+|++++|++++.|+.|.+||..+++.+..+.. ..+
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  245 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP  245 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccc
Confidence            9999753                  234555667788899999999999999999999999999999998888764 568


Q ss_pred             cceeEEcCCCCeeEEEecC
Q 021319          277 MNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       277 i~~v~~~~~~~~la~~~~d  295 (314)
                      |++++|+|++.+||+|+++
T Consensus       246 v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         246 LLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             EEEEEEEETTEEEEEETTS
T ss_pred             ceeeeecCCCCEEEEEcCC
Confidence            9999999999998876644

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-31  Score=224.01  Aligned_cols=247  Identities=20%  Similarity=0.289  Sum_probs=211.0

Q ss_pred             ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+.+.+|.+.|.+++|+|+++++++|+.|+.+++|+.............+.+|............  ..+.....|....
T Consensus        90 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  167 (340)
T d1tbga_          90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCA  167 (340)
T ss_dssp             EEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEE
T ss_pred             EEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccc--ccccccccccccc
Confidence            35677899999999999999999999999999999987654444445567788887777666543  5778899999999


Q ss_pred             EEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCC
Q 021319           93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      .++............ ........+.+.+.+++++..|+.+.+||+++.+++.... +...+.+++|+|+++.+++++.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d  247 (340)
T d1tbga_         168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC
Confidence            999877655444333 3445667788999999999999999999999998887754 45678999999999999999999


Q ss_pred             ceEEEEeCCCCCceeee--eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEE
Q 021319          171 GTVEVLTYPSLRPLDTV--VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI  248 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  248 (314)
                      +.+++|+.........+  ..+...+.+++|+|++++|++|+.||.|++||+.+++++.++.+|..+|.+++|+|++++|
T Consensus       248 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l  327 (340)
T d1tbga_         248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV  327 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             CeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEE
Confidence            99999999877665544  3456779999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCceEEEEE
Q 021319          249 ASASEDLFIDISN  261 (314)
Q Consensus       249 ~s~s~d~~v~v~~  261 (314)
                      ||||.|+.|++||
T Consensus       328 ~s~s~Dg~v~iWd  340 (340)
T d1tbga_         328 ATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSCEEEEC
T ss_pred             EEEccCCEEEEeC
Confidence            9999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-31  Score=222.41  Aligned_cols=239  Identities=15%  Similarity=0.230  Sum_probs=188.8

Q ss_pred             EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEE--ecCceEEEEEccCCCEEEEEeCCCcEEEEEc
Q 021319           60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDV  137 (314)
Q Consensus        60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  137 (314)
                      ..+.||.++|.+++|+|+ +++|+||+.|++|++||+.++++.....  ....+.+++|+|++.+ ++++.|+.+++|+.
T Consensus         6 ~~~~GH~~~V~~l~~s~d-g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECS
T ss_pred             eEcCCCCCCcEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEecc
Confidence            357899999999999997 4799999999999999999988776553  2345678999999875 45667899999997


Q ss_pred             cCCeEe----eeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC
Q 021319          138 RKFKPI----HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS  213 (314)
Q Consensus       138 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg  213 (314)
                      ......    ........+..+.+++++..++.+. ++.+.+|+.....  .  ......+.+++++|+++++++|+.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~--~--~~~~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLT--E--VPISYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEE--E--EECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             CCccccccccccccccccccccccccccccccccc-ccccccccccccc--c--cccccccccccccccccccccccccc
Confidence            653221    1123345677889999998776654 5678888753321  1  12345688999999999999999999


Q ss_pred             eEEEeeCCCcEEEE-EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe----ccCccceeEEcCCCCe
Q 021319          214 LVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP----CRAAMNSVEWNPKYNL  288 (314)
Q Consensus       214 ~i~vwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~----~~~~i~~v~~~~~~~~  288 (314)
                      .|++||+++..... ....|..+|.+++|+|++++|++++.|+.|++||..++..+....    |...|++++|+|++++
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  238 (299)
T d1nr0a2         159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR  238 (299)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999998776543 334678899999999999999999999999999998876654322    4568999999999999


Q ss_pred             eEEEecCCcccccccceEEeccccC
Q 021319          289 LAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       289 la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ||+++.|        |+++||+++.
T Consensus       239 l~sgs~d--------g~i~iwd~~~  255 (299)
T d1nr0a2         239 LATGSLD--------NSVIVWNMNK  255 (299)
T ss_dssp             EEEEETT--------SCEEEEETTC
T ss_pred             eEEEcCC--------CEEEEEECCC
Confidence            9999987        5788998753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-31  Score=225.69  Aligned_cols=250  Identities=17%  Similarity=0.180  Sum_probs=194.9

Q ss_pred             cceeeeccc-ccEEEEEECC--CCCEEEEeeCCCcEEEeecCCCCCCcee----eEEeecCCCCEEEEEEcCCCCCEEEE
Q 021319           12 HSREYTGHK-KKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVK----DIELRGHADSVDQLCWDPKHADLIAT   84 (314)
Q Consensus        12 ~~~~~~gH~-~~V~~v~~s~--~g~~l~s~~~D~~v~iw~~~~~~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s   84 (314)
                      ....+.+|. ..|++++|+|  +|.+|+||+.||+|+|||+.........    ...+..|..+|.+++|++++ ..+++
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~  132 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCV  132 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-Cccce
Confidence            345677885 6899999998  5679999999999999998643221111    12456789999999999975 45555


Q ss_pred             Ee--CCCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCE-EEEEeCCCcEEEEEccCCeEeeeec----cCcceeeEE
Q 021319           85 AS--GDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRK----FGYEVNEIA  156 (314)
Q Consensus        85 ~~--~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~  156 (314)
                      ++  .++.+++|+..++++...... .....+++|+|+++. +++++.|+.+++||++..+......    +...+.+++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             eeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence            54  478899999999887766553 345667999999875 6678899999999998877655432    234588999


Q ss_pred             eccC-CCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEEC---CCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec
Q 021319          157 WNMT-GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID---PMGRYFAVGSADSLVSLWDISEMLCVRTFTKL  232 (314)
Q Consensus       157 ~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~---~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~  232 (314)
                      |+|+ +..+++++.++.+++|+....+.+..+.+|...+..+.|+   |++++|++++.|+.|++||++++++++.+..+
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            9996 5778889999999999999888888888888776554444   68999999999999999999999999888765


Q ss_pred             ccC--eEEEEEccC-CcEEEEecCCceEEEEEC
Q 021319          233 EWP--VRTISFSHT-GDYIASASEDLFIDISNV  262 (314)
Q Consensus       233 ~~~--v~~~~~sp~-~~~l~s~s~d~~v~v~~~  262 (314)
                      ...  +..+++.+. +.+|+|+|.|+.|++||+
T Consensus       293 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            443  344444433 357899999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.9e-30  Score=218.93  Aligned_cols=241  Identities=15%  Similarity=0.216  Sum_probs=175.3

Q ss_pred             EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee-------eeEEecCce---EEEEE---c-cCCCEEEEE
Q 021319           61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS-------QQAELSGEN---INITY---K-PDGTHIAVG  126 (314)
Q Consensus        61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-------~~~~~~~~~---~~~~~---~-~~~~~l~~~  126 (314)
                      ..++|...|.++++++   ++++|+|.|++|++||.......       .........   .....   . .++..++++
T Consensus         9 ~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             ESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            3579999999999864   58999999999999997654321       111111111   11111   1 133567789


Q ss_pred             eCCCcEEEEEccCCeEee-----e------eccCcceeeEEeccC-----CCeEEEEcCCceEEEEeCCCCCc-------
Q 021319          127 NRDDELTILDVRKFKPIH-----R------RKFGYEVNEIAWNMT-----GEMFFLTTGNGTVEVLTYPSLRP-------  183 (314)
Q Consensus       127 ~~d~~i~i~d~~~~~~~~-----~------~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~-------  183 (314)
                      +.|+.+.+|++.......     .      .........+.|.+.     +..+++++.+|.+.+|++.....       
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            999999999975432111     0      011234556667665     35678889999999998642210       


Q ss_pred             -----------eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe------eecccCeEEEEEccCCc
Q 021319          184 -----------LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF------TKLEWPVRTISFSHTGD  246 (314)
Q Consensus       184 -----------~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~------~~~~~~v~~~~~sp~~~  246 (314)
                                 ......+...+++++|+|++ +||+|+.||+|++||+.+++++..+      .+|..+|.+++|+|+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence                       00111234457899999998 8899999999999999998877654      35778999999999999


Q ss_pred             EEEEecCCc---eEEEEECCCCCeEEEEe--------------ccCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319          247 YIASASEDL---FIDISNVHTGRTVHQIP--------------CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY  309 (314)
Q Consensus       247 ~l~s~s~d~---~v~v~~~~~~~~~~~~~--------------~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~  309 (314)
                      +|++|+.|+   .|++||+.+++.+..+.              |.+.|++|+|+|++++|+++|.|        |++|||
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D--------~~v~vW  316 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD--------GKLRFW  316 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT--------SEEEEE
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC--------CEEEEE
Confidence            999999886   59999999998887763              55679999999999999999988        689999


Q ss_pred             cccC
Q 021319          310 GFEN  313 (314)
Q Consensus       310 ~~~~  313 (314)
                      +++.
T Consensus       317 d~~~  320 (393)
T d1sq9a_         317 DVKT  320 (393)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            9853

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.9e-28  Score=207.22  Aligned_cols=268  Identities=14%  Similarity=0.107  Sum_probs=199.9

Q ss_pred             EEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC--CcEEEEeCCCCcee
Q 021319           26 VAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCS  102 (314)
Q Consensus        26 v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D--~~v~iwd~~~~~~~  102 (314)
                      -.||| ||+++++++ +|.|++|+++..   ...  .+ +|...|.+++|+|++. +|++++.|  ..|++||..+++..
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~---~~~--~~-~~~~~v~~~~~spDg~-~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGT---YVL--KV-PEPLRIRYVRRGGDTK-VAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSS---BEE--EC-SCCSCEEEEEECSSSE-EEEEEEETTEEEEEEEETTTCCEE
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCC---cEE--Ec-cCCCCEEEEEECCCCC-EEEEEEcCCCCEEEEEECCCCcEE
Confidence            46999 999999987 579999998642   222  23 7999999999999864 55555444  37899999998877


Q ss_pred             eeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEc----------CCc
Q 021319          103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT----------GNG  171 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~g  171 (314)
                      ........+..++|+|++++|++++.++.+.+|++...+...... ....+.+++|+|+++.++.+.          .++
T Consensus        80 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  159 (360)
T d1k32a3          80 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  159 (360)
T ss_dssp             ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence            766667778899999999999999999999999998887665543 345678899999999988653          345


Q ss_pred             eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE-------EEEeeec------------
Q 021319          172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-------VRTFTKL------------  232 (314)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~-------~~~~~~~------------  232 (314)
                      .+++|+....+.. .+..+...+..++|+|+|++|++++.++.+++||......       +..+..+            
T Consensus       160 ~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  238 (360)
T d1k32a3         160 AIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR  238 (360)
T ss_dssp             EEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred             ceeeeccccCcee-eecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence            6888888765433 3445667788999999999999999999999998654311       1111100            


Q ss_pred             ------------------------ccCeEEEEEccC-------------CcEEEEecCCceEEEEECCCCCeEEEEeccC
Q 021319          233 ------------------------EWPVRTISFSHT-------------GDYIASASEDLFIDISNVHTGRTVHQIPCRA  275 (314)
Q Consensus       233 ------------------------~~~v~~~~~sp~-------------~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~  275 (314)
                                              ......+...++             +.++++++.++.+++||..+++...   +.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~  315 (360)
T d1k32a3         239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE---VKN  315 (360)
T ss_dssp             GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE---EEE
T ss_pred             cCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE---ecC
Confidence                                    001122333332             2345677788999999998876533   234


Q ss_pred             ccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          276 AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       276 ~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      .|++++|+||++.|++++.|        |+++||++++
T Consensus       316 ~v~~~~~SpDG~~l~~~~~D--------g~i~v~d~~~  345 (360)
T d1k32a3         316 NLTDLRLSADRKTVMVRKDD--------GKIYTFPLEK  345 (360)
T ss_dssp             EEEEEEECTTSCEEEEEETT--------SCEEEEESSC
T ss_pred             CcCEEEECCCCCEEEEEECC--------CeEEEEECCC
Confidence            69999999999999999988        5788998854

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.2e-27  Score=196.10  Aligned_cols=237  Identities=21%  Similarity=0.339  Sum_probs=180.8

Q ss_pred             eEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEc
Q 021319           59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDV  137 (314)
Q Consensus        59 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  137 (314)
                      ...++||.+.|.. +++++ +++|+||+.|++|++||+.++++...+.. ...+.+++++|+  +|++++.|+.+++|+.
T Consensus         9 ~~~l~GH~~~V~s-~~~~~-g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEE-TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             CEEECCcCCceEE-EEEEC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence            3458899999854 34444 46899999999999999999998776653 345667888764  9999999999999998


Q ss_pred             cCCeEeeeeccCc---------------------------------------ceeeEEeccCCCeEEEEcCCceEEEEeC
Q 021319          138 RKFKPIHRRKFGY---------------------------------------EVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (314)
Q Consensus       138 ~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (314)
                      .............                                       ........+....++.+..++.+++|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence            7654322211100                                       0011223344566788888999999998


Q ss_pred             CCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEE
Q 021319          179 PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFID  258 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~  258 (314)
                      ...+.+..+.+|...+.++.+  ++.++++++.||.|++||++.+++++.+..|...+.+++++  +++|++++.|+.|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~  240 (342)
T d2ovrb2         165 ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVK  240 (342)
T ss_dssp             GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             ccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEE
Confidence            877777777778776666555  68899999999999999999999999999998888877765  46999999999999


Q ss_pred             EEECCCCCeEEEEec----cCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          259 ISNVHTGRTVHQIPC----RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       259 v~~~~~~~~~~~~~~----~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      +||....+....+..    ...+.+++|+  ++++++++.|        |++|||+++.
T Consensus       241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~D--------g~i~iwd~~t  289 (342)
T d2ovrb2         241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD--------GTVKLWDLKT  289 (342)
T ss_dssp             EEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT--------SEEEEEETTT
T ss_pred             EEecccccccccccccceeeeceeecccC--CCeeEEEcCC--------CEEEEEECCC
Confidence            999999888777642    3345666665  5689999977        6888998853

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-26  Score=190.36  Aligned_cols=230  Identities=15%  Similarity=0.154  Sum_probs=183.8

Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      ..+|.+.|.++.|+++ ..+++++.|+++++|++...           .....+..+++++++  .++..+.++.+.+|+
T Consensus        42 ~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  107 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKH-----------EFGSQPKVASANNDG--FTAVLTNDDDLLILQ  107 (287)
T ss_dssp             ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEE-----------ECSSCEEEEEECSSS--EEEEEETTSEEEEEE
T ss_pred             CCCCCCCEEEEEecCC-CeEEEEeecccccccccccc-----------ccccceeeeeeccCC--ceEEEeecccceeee
Confidence            4689999999999875 56899999999999987421           123446677887753  444556777899999


Q ss_pred             CCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-cEEEEEccCCeEeeeec--cCcceeeEEeccCCCeEEEEcCCce
Q 021319           96 ARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGT  172 (314)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~  172 (314)
                      ..++............  .++.+++..+++++.++ .+++|++...+......  +...+.+++|+|++.+++++..+|.
T Consensus       108 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~  185 (287)
T d1pgua2         108 SFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK  185 (287)
T ss_dssp             TTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccceeeeeecccccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc
Confidence            9988887776655544  45567788888888775 69999987766555443  3456899999999999999999999


Q ss_pred             EEEEeCCCCCcee-eeeecccceEEEEECCC----------CCEEEEeeCCCeEEEeeCCC-cEEEEEeeecccCeEEEE
Q 021319          173 VEVLTYPSLRPLD-TVVAHTAGCYCIAIDPM----------GRYFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTIS  240 (314)
Q Consensus       173 ~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~----------~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~  240 (314)
                      +++|+....+... .+..|...+.+++|+|.          +.++++|+.|+.|++||+++ ...+..+.+|...|.+++
T Consensus       186 i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~  265 (287)
T d1pgua2         186 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL  265 (287)
T ss_dssp             EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEE
T ss_pred             ccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEE
Confidence            9999997766443 45689999999999875          46899999999999999976 556677778999999999


Q ss_pred             EccCCcEEEEecCCceEEEEEC
Q 021319          241 FSHTGDYIASASEDLFIDISNV  262 (314)
Q Consensus       241 ~sp~~~~l~s~s~d~~v~v~~~  262 (314)
                      |+|++ .|+|++.|+.|++|++
T Consensus       266 ~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         266 WETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEETT-EEEEEETTSCEEEEEE
T ss_pred             ECCCC-EEEEEECCCeEEEEEE
Confidence            99986 5889999999999985

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=7.3e-24  Score=174.36  Aligned_cols=264  Identities=14%  Similarity=0.149  Sum_probs=206.8

Q ss_pred             EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEE
Q 021319           35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI  114 (314)
Q Consensus        35 l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~  114 (314)
                      .++++.|++|++||+++..   +. .+++ ....+..++++|++..++++++.++.|++||+.+++.............+
T Consensus         5 yV~~~~~~~v~v~D~~t~~---~~-~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~   79 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNK---VT-ATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV   79 (301)
T ss_dssp             EEEETTTTEEEEEETTTTE---EE-EEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             EEEECCCCEEEEEECCCCe---EE-EEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccc
Confidence            4677889999999987642   22 2333 33457889999987555678888999999999999988888777778889


Q ss_pred             EEccCCCEEEEE-eCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE-cCCceEEEEeCCCCCceeeeeeccc
Q 021319          115 TYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLRPLDTVVAHTA  192 (314)
Q Consensus       115 ~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~  192 (314)
                      .+++++..+++. ..+..+.+|+....+.............+.+++++..+++. ..++.+.+++....+....+.. ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  158 (301)
T d1l0qa2          80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GR  158 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CS
T ss_pred             ccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CC
Confidence            999999877655 45667999999998888887777778889999999887655 4577888898877766655543 45


Q ss_pred             ceEEEEECCCCCEEEEeeCC-CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEec---CCceEEEEECCCCCeE
Q 021319          193 GCYCIAIDPMGRYFAVGSAD-SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS---EDLFIDISNVHTGRTV  268 (314)
Q Consensus       193 ~i~~i~~~~~~~~l~t~~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s---~d~~v~v~~~~~~~~~  268 (314)
                      .+..++++|+++.+++++.+ +.+.+|+.........+... ..+..++|+|++..++.++   .++.|.+||..+++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence            58899999999988877765 67888888777766665443 4567899999999887654   3478999999999999


Q ss_pred             EEEeccCccceeEEcCCCCee-EEEecCCcccccccceEEeccccC
Q 021319          269 HQIPCRAAMNSVEWNPKYNLL-AYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       269 ~~~~~~~~i~~v~~~~~~~~l-a~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                      ..++....+.+++|+|+++.| ++++.|        |+++||+++.
T Consensus       238 ~~~~~~~~~~~va~spdg~~l~va~~~~--------~~i~v~D~~t  275 (301)
T d1l0qa2         238 ARIPVGPDPAGIAVTPDGKKVYVALSFC--------NTVSVIDTAT  275 (301)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEETTT--------TEEEEEETTT
T ss_pred             EEEcCCCCEEEEEEeCCCCEEEEEECCC--------CeEEEEECCC
Confidence            888887789999999999976 455544        6788888753

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.1e-25  Score=189.98  Aligned_cols=244  Identities=9%  Similarity=0.021  Sum_probs=183.6

Q ss_pred             cccccEEEEEECCCCCEEEEeeCCC--cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319           18 GHKKKVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD   95 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~~~D~--~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd   95 (314)
                      +|...|++++|+|||++|++++.|.  .|++|+++.+.     ...+..|...|.+++|+|++ ++|++++.++.+++|+
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-----~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~  113 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-----AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVD  113 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-----EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-----EEEeeCCCceEEeeeecccc-cccceecccccccccc
Confidence            7999999999999999998877654  79999987532     23567899999999999985 6899999999999999


Q ss_pred             CCCCceeeeEEecC-ceEEEEEccCCCEEEEEeC----------CCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeE
Q 021319           96 ARSGKCSQQAELSG-ENINITYKPDGTHIAVGNR----------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF  164 (314)
Q Consensus        96 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ..++++........ ....++|+|+|++|+.+..          ++.+.+||+...+.............+.|+|+++.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l  193 (360)
T d1k32a3         114 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL  193 (360)
T ss_dssp             TTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEE
T ss_pred             ccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEE
Confidence            99988776655443 3456999999999986542          345889999988777666666778889999999999


Q ss_pred             EEEcCCceEEEEeCCCCCc-------eeeee------------------------------------ecccceEEEEECC
Q 021319          165 FLTTGNGTVEVLTYPSLRP-------LDTVV------------------------------------AHTAGCYCIAIDP  201 (314)
Q Consensus       165 ~~~~~~g~~~~~~~~~~~~-------~~~~~------------------------------------~~~~~i~~i~~~~  201 (314)
                      ++++.++.+.+|+......       ...+.                                    ...+....+...+
T Consensus       194 ~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (360)
T d1k32a3         194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE  273 (360)
T ss_dssp             EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS
T ss_pred             EEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecC
Confidence            9998888887776432110       00000                                    0011122333332


Q ss_pred             CC-------------CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeE
Q 021319          202 MG-------------RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV  268 (314)
Q Consensus       202 ~~-------------~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~  268 (314)
                      ++             .++++++.++.+++||+.+.+..    .+...|.+++|||||++|++++.||.|++||+.+++..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~  349 (360)
T d1k32a3         274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE  349 (360)
T ss_dssp             SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred             CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcc
Confidence            22             24566677889999999887543    23346899999999999999999999999999988766


Q ss_pred             EEE
Q 021319          269 HQI  271 (314)
Q Consensus       269 ~~~  271 (314)
                      ..+
T Consensus       350 ~~~  352 (360)
T d1k32a3         350 RTV  352 (360)
T ss_dssp             EEC
T ss_pred             eEE
Confidence            554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-25  Score=187.60  Aligned_cols=243  Identities=14%  Similarity=0.147  Sum_probs=175.8

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee----eeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEE
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS----QQAELSGENINITYKPDG-THIAVGNRDDELTILD  136 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d  136 (314)
                      ..+|.+.|.+|+|+|++ ++|++|+.|++|+|||+..+...    ....+...+.+++|+|++ .+|++|+.|+.+.+|+
T Consensus         7 ~~~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             CCCCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            56899999999999974 79999999999999998765432    222345667889999864 5788999999999999


Q ss_pred             ccCCeEeeeecc--CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee----ec--ccceEEEEECCCCCEEEE
Q 021319          137 VRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV----AH--TAGCYCIAIDPMGRYFAV  208 (314)
Q Consensus       137 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~--~~~i~~i~~~~~~~~l~t  208 (314)
                      +...........  ........+.+....+++++.++.+.+|+...........    .+  ........+.+.+..+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (342)
T d1yfqa_          86 LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV  165 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence            987655443322  2233445567788899999999999999875433222221    11  223456677788899999


Q ss_pred             eeCCCeEEEeeCCCcEEE---EEeeecccCeEEEEEc-cCCcEEEEecCCceEEEEECCCCCeE------EEEe------
Q 021319          209 GSADSLVSLWDISEMLCV---RTFTKLEWPVRTISFS-HTGDYIASASEDLFIDISNVHTGRTV------HQIP------  272 (314)
Q Consensus       209 ~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s-p~~~~l~s~s~d~~v~v~~~~~~~~~------~~~~------  272 (314)
                      ++.|+.|++||+......   ...........+..+. +++..+++++.|+.+.+|+.......      ..+.      
T Consensus       166 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T d1yfqa_         166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL  245 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred             ecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeecc
Confidence            999999999998754322   2222334445555554 56789999999999999997643211      1111      


Q ss_pred             ----ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319          273 ----CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN  313 (314)
Q Consensus       273 ----~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~  313 (314)
                          +...+++|+|+|++++||+||.|        |+++||++++
T Consensus       246 ~~~~~~~~v~~l~~sp~~~~lasg~~D--------g~v~vWD~~~  282 (342)
T d1yfqa_         246 KDTNLAYPVNSIEFSPRHKFLYTAGSD--------GIISCWNLQT  282 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEETT--------SCEEEEETTT
T ss_pred             CCCcccccceeEEecCCccEEEEECCC--------CEEEEEECCC
Confidence                22358899999999999999987        6789999864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=9.9e-25  Score=189.44  Aligned_cols=294  Identities=12%  Similarity=0.030  Sum_probs=198.2

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeE-EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      +.+..| ..++.++|||||++|++++.|++|++||+++........+ ...+|...+.+++|+|++..+++++..+++++
T Consensus        56 ~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~  134 (426)
T d1hzua2          56 KVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFA  134 (426)
T ss_dssp             EEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred             EEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEE
Confidence            455665 4599999999999999999999999999987543222211 12356666777788888765567777899999


Q ss_pred             EEeCCCCceeeeEEe------------cCceEEEEEccCCCEEEEEeCC-CcEEEEEccCCeE--eeeeccCcceeeEEe
Q 021319           93 LWDARSGKCSQQAEL------------SGENINITYKPDGTHIAVGNRD-DELTILDVRKFKP--IHRRKFGYEVNEIAW  157 (314)
Q Consensus        93 iwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~--~~~~~~~~~~~~~~~  157 (314)
                      +||..++.+......            ......+..++++..++....+ +.+.+++......  +.....+..+..+.+
T Consensus       135 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (426)
T d1hzua2         135 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW  214 (426)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEE
T ss_pred             EEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeE
Confidence            999998877654432            2223456677888777765543 4455665544332  233455667888999


Q ss_pred             ccCCCeEEEEc-CCceEEEEeCCCCCceeeeeec--ccceEEEEECC--CCCE-EEEeeCCCeEEEeeCCC-------cE
Q 021319          158 NMTGEMFFLTT-GNGTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDP--MGRY-FAVGSADSLVSLWDISE-------ML  224 (314)
Q Consensus       158 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~--~~~~-l~t~~~dg~i~vwd~~~-------~~  224 (314)
                      ++++++++++. ....+.+++....+.+......  ........+.+  .+.. .+..+.|+.+.+|+...       .+
T Consensus       215 ~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~  294 (426)
T d1hzua2         215 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK  294 (426)
T ss_dssp             CTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS
T ss_pred             CCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccce
Confidence            99999887775 4567778887766654443311  11112222222  2222 22344567777776543       46


Q ss_pred             EEEEeeecccCeEEEEEccCCcEEE-------EecCCceEEEEECCCCCeEEEEe----------ccCccceeEEcCCCC
Q 021319          225 CVRTFTKLEWPVRTISFSHTGDYIA-------SASEDLFIDISNVHTGRTVHQIP----------CRAAMNSVEWNPKYN  287 (314)
Q Consensus       225 ~~~~~~~~~~~v~~~~~sp~~~~l~-------s~s~d~~v~v~~~~~~~~~~~~~----------~~~~i~~v~~~~~~~  287 (314)
                      ....+.+|...+..++|+|++++|+       +++.|+.|.|||+.+++...++.          +..++..++|||||+
T Consensus       295 ~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk  374 (426)
T d1hzua2         295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD  374 (426)
T ss_dssp             EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred             EeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC
Confidence            7788889988999999999999999       45678899999999998776542          233588899999998


Q ss_pred             eeEE-EecCCcccccccceEEecccc
Q 021319          288 LLAY-AGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       288 ~la~-~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      .+.. +..+.+    ++|.++|||..
T Consensus       375 ~i~vs~~~~~~----~~~~i~v~D~~  396 (426)
T d1hzua2         375 EVWFSVWNGKN----DSSALVVVDDK  396 (426)
T ss_dssp             EEEEEECCCTT----SCCEEEEEETT
T ss_pred             EEEEEEecCCC----CCCeEEEEECC
Confidence            7643 322211    46778888753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.6e-23  Score=172.28  Aligned_cols=246  Identities=15%  Similarity=0.165  Sum_probs=195.2

Q ss_pred             ccEEEEEECCCCCEE-EEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           21 KKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l-~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      ..+..++|+|||++| ++++.++.|++||+.+..    ....+..|. .+..+.+++++..+++++..++.+.+|+..++
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN----VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE----EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc----eeeeeeccc-cccccccccccccccccccccceeeecccccc
Confidence            457899999999987 567789999999987532    223445554 46889999987767778888999999999999


Q ss_pred             ceeeeEEecCceEEEEEccCCCEEEEE-eCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC-ceEEEEe
Q 021319          100 KCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-GTVEVLT  177 (314)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~  177 (314)
                      +.............+.++|++..+++. ..+..+.+|+..+.+.+...........+.+++++..++++..+ +.+.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (301)
T d1l0qa2         107 TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID  186 (301)
T ss_dssp             EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccccc
Confidence            888887777788889999999988654 55777999999999888877777778889999999888777654 5666666


Q ss_pred             CCCCCceeeeeecccceEEEEECCCCCEEEEeeC---CCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEE-EEecC
Q 021319          178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASE  253 (314)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~s~  253 (314)
                      ....+..... .....+..++++++++.+++++.   ++.|.+||+.+++.+..+..+. .+..++|+|||++| ++++.
T Consensus       187 ~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~-~~~~va~spdg~~l~va~~~  264 (301)
T d1l0qa2         187 TVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSF  264 (301)
T ss_dssp             TTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT
T ss_pred             ccceeeeecc-cccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCC-CEEEEEEeCCCCEEEEEECC
Confidence            5554443333 34456788999999998776543   4689999999999888876544 57899999999986 67788


Q ss_pred             CceEEEEECCCCCeEEEEec
Q 021319          254 DLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       254 d~~v~v~~~~~~~~~~~~~~  273 (314)
                      |+.|.+||+.+++.+.+++.
T Consensus       265 ~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         265 CNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEECCCCeEEEEEeC
Confidence            99999999999998888764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.2e-24  Score=172.55  Aligned_cols=230  Identities=16%  Similarity=0.275  Sum_probs=179.9

Q ss_pred             eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 021319           62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKF  140 (314)
Q Consensus        62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  140 (314)
                      ..+|...|.|+++  + +++|+||+.|++|++||+.++++...+..+ ..+.+++  +++++|++++.|+.+.+|+++..
T Consensus        11 ~~~~~~~V~c~~~--d-~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~--~~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          11 RSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ--YDERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             CCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE--CCSSEEEEEETTSCEEEEESSSC
T ss_pred             cCCCCCCEEEEEE--c-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeee--cccceeecccccccccccccccc
Confidence            3467788998776  3 469999999999999999999988877643 4444555  47889999999999999999887


Q ss_pred             eEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc---eeeeeecccceEEEEECCCCCEEEEeeCCCeEEE
Q 021319          141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL  217 (314)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~v  217 (314)
                      .......... .....+.+....++.+..++.+.+|+......   ...+..|...+.++.+.  ...+++++.|+.|++
T Consensus        86 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~  162 (293)
T d1p22a2          86 EMLNTLIHHC-EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV  162 (293)
T ss_dssp             CEEEEECCCC-SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEE
T ss_pred             cccccccccc-cccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceee
Confidence            7655544332 23334556677888999999999999876543   23345677777777765  457888999999999


Q ss_pred             eeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCC
Q 021319          218 WDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       218 wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      ||+++++.+..+.++...+..+.++  +.++++++.|+.|++||..+.+.+..... ...+.  .+++++.+|++++.| 
T Consensus       163 ~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~d-  237 (293)
T d1p22a2         163 WNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYD-  237 (293)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEEEEEETT-
T ss_pred             ecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeee--eccccceEEEEEcCC-
Confidence            9999999999998888888777664  57899999999999999999988877654 33344  456778899999987 


Q ss_pred             cccccccceEEeccc
Q 021319          297 NKYQADEGVFRIYGF  311 (314)
Q Consensus       297 ~~~~~~~~~~~~~~~  311 (314)
                             |.++||++
T Consensus       238 -------g~i~iwd~  245 (293)
T d1p22a2         238 -------GKIKVWDL  245 (293)
T ss_dssp             -------SCEEEEEH
T ss_pred             -------CEEEEEEC
Confidence                   57888876

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=1e-23  Score=176.09  Aligned_cols=266  Identities=11%  Similarity=0.060  Sum_probs=196.2

Q ss_pred             CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCc--
Q 021319           33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE--  110 (314)
Q Consensus        33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~--  110 (314)
                      +++++++.|++|+|||+++..  .+..+.+..+...+..++++|++..++++++.++.|.+||+.+++..........  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~--~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA--VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE--EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCe--EEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            579999999999999997632  2333344445566789999998654557888899999999999998776654322  


Q ss_pred             ----eEEEEEccCCCEEEEEeC------------CCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEE
Q 021319          111 ----NINITYKPDGTHIAVGNR------------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE  174 (314)
Q Consensus       111 ----~~~~~~~~~~~~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  174 (314)
                          ...++++|+++.++++..            +..+.+||..+.+.+........+..+++++++..+++++.+  ..
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~  157 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LH  157 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EE
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cc
Confidence                224889999999987763            567889999998888877777778899999999999988654  45


Q ss_pred             EEeCCCCCceeeeeeccc-----------------------ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE-Eee
Q 021319          175 VLTYPSLRPLDTVVAHTA-----------------------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFT  230 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~-----------------------~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~  230 (314)
                      +|+....+....+..+..                       .........+......+..++.+.+||..++.... .+.
T Consensus       158 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (337)
T d1pbyb_         158 VMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR  237 (337)
T ss_dssp             EEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred             eeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec
Confidence            676655443333221110                       01111122222233334556679999998876543 345


Q ss_pred             ecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          231 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       231 ~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      .+...+..++++|++.+++.+  ++.+.+||+.+++.+..+.....+.+++|+|+|+.|++++.|        |+++||+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~--------~~i~v~D  307 (337)
T d1pbyb_         238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL--------GDLAAYD  307 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBS--------SEEEEEE
T ss_pred             CCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC--------CcEEEEE
Confidence            566678889999999999876  478999999999999998888889999999999999999876        5788888


Q ss_pred             cc
Q 021319          311 FE  312 (314)
Q Consensus       311 ~~  312 (314)
                      .+
T Consensus       308 ~~  309 (337)
T d1pbyb_         308 AE  309 (337)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=6.6e-25  Score=190.74  Aligned_cols=275  Identities=9%  Similarity=0.005  Sum_probs=177.5

Q ss_pred             eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEE-eecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      +.+..| ..++.++|||||++|++++.|++|++||+.+........+. ..+|.+.+.+..|+|++..++++++.+++|+
T Consensus        56 ~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~  134 (432)
T d1qksa2          56 TVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYV  134 (432)
T ss_dssp             EEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             EEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEE
Confidence            445555 36999999999999999999999999999875432222222 2345566666677888765678999999999


Q ss_pred             EEeCCCCceeeeEEe------------cCceEEEEEccCCCEEEE-EeCCCcEEEEEccCCeEe--eeeccCcceeeEEe
Q 021319           93 LWDARSGKCSQQAEL------------SGENINITYKPDGTHIAV-GNRDDELTILDVRKFKPI--HRRKFGYEVNEIAW  157 (314)
Q Consensus        93 iwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~  157 (314)
                      +||..++++......            ......+.++|++..+++ ...++.+.+||....+..  ..+..+.....+++
T Consensus       135 i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~  214 (432)
T d1qksa2         135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL  214 (432)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred             EEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceE
Confidence            999999887655432            233456889999988755 556788999998876543  34556667889999


Q ss_pred             ccCCCeEEEEcC-CceEEEEeCCCCCceeeee-----ecccceEEEEECCCCCEEEEee-CCCeEEEeeCCCc-------
Q 021319          158 NMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVV-----AHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEM-------  223 (314)
Q Consensus       158 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~-------  223 (314)
                      +|++.+++++.. ++.+.+++....+....+.     .|............+...++.. .++.|.+|+....       
T Consensus       215 spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~  294 (432)
T d1qksa2         215 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW  294 (432)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             CCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccccccc
Confidence            999998776654 5577777776554433322     1223333444444444444333 2566777765432       


Q ss_pred             EEEEEeee-------------------------cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccc
Q 021319          224 LCVRTFTK-------------------------LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMN  278 (314)
Q Consensus       224 ~~~~~~~~-------------------------~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~  278 (314)
                      +..+.+..                         +.....++++ ||++.|++++.|+.+++|+..++..+.  .+..++.
T Consensus       295 ~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~--~~~~~v~  371 (432)
T d1qksa2         295 KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGIT--EGQPRVV  371 (432)
T ss_dssp             SEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCC--SSCCEEE
T ss_pred             EEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccccccC--CCCCcEE
Confidence            11111111                         0001122333 677777777777777777765433222  2345688


Q ss_pred             eeEEcCCCCeeEEE
Q 021319          279 SVEWNPKYNLLAYA  292 (314)
Q Consensus       279 ~v~~~~~~~~la~~  292 (314)
                      .++|||||+.++++
T Consensus       372 ~~~fS~DG~~v~~S  385 (432)
T d1qksa2         372 QGEFNKDGTEVWFS  385 (432)
T ss_dssp             EEEECTTSSEEEEE
T ss_pred             EeEECCCCCEEEEE
Confidence            99999999887544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=2.9e-23  Score=173.84  Aligned_cols=270  Identities=9%  Similarity=-0.033  Sum_probs=187.3

Q ss_pred             EEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 021319           26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ  104 (314)
Q Consensus        26 v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~  104 (314)
                      ++|++++++|++++.|++|.+||++++   +.. ..++ .|...+.+++|+|++..++++++.++.|.+||+.+++....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~---~~~-~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD---TVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT---EEE-EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC---CEE-EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence            468999999999999999999999864   222 2233 35566789999998765567888899999999999987765


Q ss_pred             EEecC-------ceEEEEEccCCCEEEEEe------------CCCcEEEEEccCCeEeee---eccCcceeeEEeccCCC
Q 021319          105 AELSG-------ENINITYKPDGTHIAVGN------------RDDELTILDVRKFKPIHR---RKFGYEVNEIAWNMTGE  162 (314)
Q Consensus       105 ~~~~~-------~~~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~  162 (314)
                      .....       ....++++|||++++++.            .+..+.+||..+.+....   ...+.....+.+++++.
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS  157 (346)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred             ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence            54322       123588999999998775            356678888766443322   12223344455566665


Q ss_pred             eEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEEC--------------------------CCCCEEEEeeCCCeEE
Q 021319          163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID--------------------------PMGRYFAVGSADSLVS  216 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--------------------------~~~~~l~t~~~dg~i~  216 (314)
                      .++.   ++.+.+|+..+.+.+..+..+. .+..+.++                          +....++++..+..+.
T Consensus       158 ~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
T d1jmxb_         158 LYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  233 (346)
T ss_dssp             EEEE---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             EEEe---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEE
Confidence            5443   2446677766555444433221 11112222                          2333445556667788


Q ss_pred             EeeCCCcEEE-EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319          217 LWDISEMLCV-RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       217 vwd~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d  295 (314)
                      +||+.++... .....+...+..+.++|++.++++.+.+ .+.+||..+++.+..+.....+.+++|+||++.|++++.|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d  312 (346)
T d1jmxb_         234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF  312 (346)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES-EEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred             EEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCC-eEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCC
Confidence            8998877654 3445677788899999999998877654 6999999999999888877789999999999999999877


Q ss_pred             CcccccccceEEecccc
Q 021319          296 KNKYQADEGVFRIYGFE  312 (314)
Q Consensus       296 ~~~~~~~~~~~~~~~~~  312 (314)
                              |+++||+.+
T Consensus       313 --------~~v~v~D~~  321 (346)
T d1jmxb_         313 --------NDLAVFNPD  321 (346)
T ss_dssp             --------SEEEEEETT
T ss_pred             --------CcEEEEECc
Confidence                    578888875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=8.5e-21  Score=158.05  Aligned_cols=245  Identities=10%  Similarity=0.001  Sum_probs=177.1

Q ss_pred             ccccEEEEEECCCCCEE-EEeeCCCcEEEeecCCCCCCceeeEEeecCC-----CCEEEEEEcCCCCCEEEEEe------
Q 021319           19 HKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHA-----DSVDQLCWDPKHADLIATAS------   86 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l-~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l~s~~------   86 (314)
                      +...+.+++|+|||+++ ++++.|+.|++||+++..  .+  ..+..+.     ..+..++++|++. .++++.      
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~--~~--~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~  106 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TL--GRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLE  106 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EE--EEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEEC
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc--EE--EEEecCCCcccccceeeEEEcCCCc-EEEEeecCCcce
Confidence            44568899999999987 567789999999997643  11  1233232     2345689999864 555554      


Q ss_pred             ------CCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccC
Q 021319           87 ------GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT  160 (314)
Q Consensus        87 ------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  160 (314)
                            .+..+.+||..+++.............++++|+|+++++++  +.+.+||....+...............+.++
T Consensus       107 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  184 (337)
T d1pbyb_         107 LTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPD  184 (337)
T ss_dssp             SSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCB
T ss_pred             eeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcceeeeecCcEEEEeecCCccccceecCC
Confidence                  46789999999998888777777777899999999999886  4578899988877665543322111122222


Q ss_pred             CCeE------------------------EEEcCCceEEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEeeCCCeE
Q 021319          161 GEMF------------------------FLTTGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLV  215 (314)
Q Consensus       161 ~~~~------------------------~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i  215 (314)
                      +..+                        .....++.+.+++........ .+..+...+.+++++|++.+++.+  ++.|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i  262 (337)
T d1pbyb_         185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVL  262 (337)
T ss_dssp             CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEE
T ss_pred             cceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccE
Confidence            1111                        111123456667766554332 334566778899999999998766  5789


Q ss_pred             EEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319          216 SLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       216 ~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~  273 (314)
                      ++||+.+++.+..+. +...+.+++|+|||++|++++.|+.|.|||..+++.+.++..
T Consensus       263 ~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         263 ESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            999999999988874 455688999999999999999999999999999999988753

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=2.6e-20  Score=161.47  Aligned_cols=227  Identities=12%  Similarity=0.026  Sum_probs=153.3

Q ss_pred             CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceee--eEEec
Q 021319           31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ--QAELS  108 (314)
Q Consensus        31 ~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~--~~~~~  108 (314)
                      +.-++++.+.|++|+|||.++..    ....+..| ..+..++|+|++ +++++++.|+++++||+.+++...  .....
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~----v~~~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYE----IKTVLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCC----EEEEEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             CcEEEEEEcCCCEEEEEECCCCc----EEEEEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEecC
Confidence            33346899999999999998643    22345555 469999999985 688999999999999998876433  33322


Q ss_pred             CceEE----EEEccCCCEE-EEEeCCCcEEEEEccCCeEeeeecc------------CcceeeEEeccCCCeEEEE-cCC
Q 021319          109 GENIN----ITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKF------------GYEVNEIAWNMTGEMFFLT-TGN  170 (314)
Q Consensus       109 ~~~~~----~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  170 (314)
                      .....    ..|+|||++| +++..++.+.+||..+.+++.....            ......+.+++++..++++ ..+
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence            33333    3467899986 5678899999999998877654332            2234567888888876554 567


Q ss_pred             ceEEEEeCCCCCceeeee-ecccceEEEEECCCCCEEEEeeCC-CeEEEeeCCCcEEEEEeee-----cccCeEEEEEcc
Q 021319          171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSAD-SLVSLWDISEMLCVRTFTK-----LEWPVRTISFSH  243 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~t~~~d-g~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~sp  243 (314)
                      +.+.+++....+...... .+...+..++|+|+|+++++++.+ ..+.++|....+.+..+..     +........+.+
T Consensus       185 ~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  264 (432)
T d1qksa2         185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT  264 (432)
T ss_dssp             TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred             CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC
Confidence            899999987766443332 445678899999999987776655 5899999988777655432     111223333333


Q ss_pred             CCcEEEEec-CCceEEEEECC
Q 021319          244 TGDYIASAS-EDLFIDISNVH  263 (314)
Q Consensus       244 ~~~~l~s~s-~d~~v~v~~~~  263 (314)
                      .+...++.. .|+.+.+|+..
T Consensus       265 ~g~~~~~~~lg~~~v~~~~~~  285 (432)
T d1qksa2         265 FGPVWATSHMGDDSVALIGTD  285 (432)
T ss_dssp             TEEEEEEEBSSSSEEEEEECC
T ss_pred             CCceecccccCCceEEecccc
Confidence            334443332 35556666543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=6e-20  Score=158.95  Aligned_cols=275  Identities=13%  Similarity=0.072  Sum_probs=184.1

Q ss_pred             ECCCC--CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE
Q 021319           28 WNCTG--TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA  105 (314)
Q Consensus        28 ~s~~g--~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~  105 (314)
                      ++.|.  -++++.+.|++|+|||+.+..   . ...+..| ..+..++|+|++ +++++++.|++|++||+.+++.....
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~---~-~~~l~~g-~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~   99 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKK---I-VKVIDTG-YAVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVA   99 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCS---E-EEEEECC-SSEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCc---E-EEEEeCC-CCeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEEE
Confidence            44553  356888999999999998642   2 2245555 458999999985 68899999999999999988765433


Q ss_pred             Ee--cCce----EEEEEccCCCEEEEE-eCCCcEEEEEccCCeEeeeecc------------CcceeeEEeccCCCeEEE
Q 021319          106 EL--SGEN----INITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKF------------GYEVNEIAWNMTGEMFFL  166 (314)
Q Consensus       106 ~~--~~~~----~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  166 (314)
                      ..  ....    .+++|+|||++++++ ..++.+.+||.....++.....            ......+..++++..++.
T Consensus       100 ~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~  179 (426)
T d1hzua2         100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  179 (426)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEE
Confidence            32  2222    235567899987654 5789999999998776544322            122344555666666555


Q ss_pred             Ec-CCceEEEEeCCCCCce-eeeeecccceEEEEECCCCCEEEEeeC-CCeEEEeeCCCcEEEEEeeecc--cCeEEEEE
Q 021319          167 TT-GNGTVEVLTYPSLRPL-DTVVAHTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTKLE--WPVRTISF  241 (314)
Q Consensus       167 ~~-~~g~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~  241 (314)
                      .. ..+.+.++.......+ .....+...+..++++|++++++++.. +..+.+++..+++.+.......  .+...+.+
T Consensus       180 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (426)
T d1hzua2         180 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF  259 (426)
T ss_dssp             EETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEE
T ss_pred             ecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeee
Confidence            44 3456666655444332 233467778899999999998776654 5679999999998877664332  22333444


Q ss_pred             ccCCc---EEEEecCCceEEEEECCC-------CCeEEEEec-cCccceeEEcCCCCeeEEEec---CCcccccccceEE
Q 021319          242 SHTGD---YIASASEDLFIDISNVHT-------GRTVHQIPC-RAAMNSVEWNPKYNLLAYAGD---DKNKYQADEGVFR  307 (314)
Q Consensus       242 sp~~~---~l~s~s~d~~v~v~~~~~-------~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~---d~~~~~~~~~~~~  307 (314)
                      .+.+.   ..++.+.|+.+.+|+...       ++....+.. ...+..|+|||++++|+....   ++    ..+++++
T Consensus       260 ~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~----~~~~tv~  335 (426)
T d1hzua2         260 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA----RISQSVA  335 (426)
T ss_dssp             EETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSH----HHHTCEE
T ss_pred             ecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCc----ccCCEEE
Confidence            43332   223445678888887654       355556653 567999999999999985321   11    1357899


Q ss_pred             ecccc
Q 021319          308 IYGFE  312 (314)
Q Consensus       308 ~~~~~  312 (314)
                      ||+++
T Consensus       336 vwd~~  340 (426)
T d1hzua2         336 VFDLK  340 (426)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99974

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5.1e-19  Score=147.17  Aligned_cols=270  Identities=14%  Similarity=0.192  Sum_probs=183.6

Q ss_pred             EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceee----eEEecC
Q 021319           34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ----QAELSG  109 (314)
Q Consensus        34 ~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~----~~~~~~  109 (314)
                      .+++++.|++|++|+++...  .........|.+.+..++|+|++..+++++..|+.|++|++.......    ......
T Consensus         6 v~v~~~~~~~I~v~~~~~~~--~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG--ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS--CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCC--CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            45788899999999997533  233334456889999999999865455666679999999987654322    222334


Q ss_pred             ceEEEEEccCCCEEEEEeC-CCcEEEEEccCCeEeee---eccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCCCCce
Q 021319          110 ENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHR---RKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPL  184 (314)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~  184 (314)
                      .+..++++|||++|+++.. ++.+.+|+.........   ......+..+.++++++.++.+. ....+.+|+.......
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            5567999999999998875 66788888776554333   23345577889999999877665 4567888886554322


Q ss_pred             eee------eecccceEEEEECCCCCEEEEee-CCCeEEEeeCCCc----EEEEEeee------cccCeEEEEEccCCcE
Q 021319          185 DTV------VAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEM----LCVRTFTK------LEWPVRTISFSHTGDY  247 (314)
Q Consensus       185 ~~~------~~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~~~~----~~~~~~~~------~~~~v~~~~~sp~~~~  247 (314)
                      ...      ......+..++|++++.+++... ..+...+|+....    ........      .......++++|++++
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence            211      12334568999999998876554 5567788876432    22222211      1234667889999987


Q ss_pred             EEEe-cCCceEEEEECCCCCeEEE----EeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319          248 IASA-SEDLFIDISNVHTGRTVHQ----IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       248 l~s~-s~d~~v~v~~~~~~~~~~~----~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ++.+ ..++.+.+|+.........    ......+..++|+|+|++|++++.+       ++.++||.++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~-------~~~v~v~~id  306 (333)
T d1ri6a_         244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK-------SHHISVYEIV  306 (333)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT-------TCEEEEEEEE
T ss_pred             eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC-------CCeEEEEEEE
Confidence            6655 5678899998765432222    2334568899999999998877755       3578888664

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=5.6e-17  Score=137.07  Aligned_cols=277  Identities=12%  Similarity=0.001  Sum_probs=186.5

Q ss_pred             ecccccEEEEEECCCCCEEEEe-----eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe-----
Q 021319           17 TGHKKKVHSVAWNCTGTKLASG-----SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-----   86 (314)
Q Consensus        17 ~gH~~~V~~v~~s~~g~~l~s~-----~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-----   86 (314)
                      .+|..++.+++++|||+.++..     +.++.|.+||.++.   +.. .++..+..+  .+.|+|++. .++.++     
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg---~~~-~~~~~~~~~--~~a~SpDG~-~l~va~~~~~~   89 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG---SIL-GHVNGGFLP--NPVAAHSGS-EFALASTSFSR   89 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC---CEE-EEEeCCCCc--cEEEcCCCC-EEEEEeecCCc
Confidence            4678899999999999987664     23456788887653   222 235555443  689999865 555543     


Q ss_pred             -----CCCcEEEEeCCCCceeeeEEecCc--------eEEEEEccCCCEEEEEe--CCCcEEEEEccCCeEeeeeccCcc
Q 021319           87 -----GDKTVRLWDARSGKCSQQAELSGE--------NINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYE  151 (314)
Q Consensus        87 -----~D~~v~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~  151 (314)
                           .++.|++||..+++..........        ...+.++++++.+++..  .+..+.+|+....+......   .
T Consensus        90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~  166 (373)
T d2madh_          90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS---S  166 (373)
T ss_pred             ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec---c
Confidence                 467899999999987765543322        23467888998776654  35578888887766544333   3


Q ss_pred             eeeEEeccCCCeE-EEEcCCceEEEEeCCCCCceeeeeec------ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319          152 VNEIAWNMTGEMF-FLTTGNGTVEVLTYPSLRPLDTVVAH------TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (314)
Q Consensus       152 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~  224 (314)
                      ...+.++++++.. ++...++.+.+|+....+.......+      ........+++++.++ ..+.++.+.+|+.....
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAG  245 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCCe
Confidence            4567788888755 56778999999998766554443321      1223455666666554 45578889999987664


Q ss_pred             EEE--Eeeec----------ccCeEEEEEccCCcEEE----------EecCCceEEEEECCCCCeEEEEeccCccceeEE
Q 021319          225 CVR--TFTKL----------EWPVRTISFSHTGDYIA----------SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEW  282 (314)
Q Consensus       225 ~~~--~~~~~----------~~~v~~~~~sp~~~~l~----------s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~  282 (314)
                      ...  .....          ......++++|++..++          +...++.+.+||..+++.+..+.....+.+++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~  325 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISV  325 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEE
Confidence            322  11111          11234456677766544          445567889999999999999888888999999


Q ss_pred             cCCCCe--eEEEecCCcccccccceEEecccc
Q 021319          283 NPKYNL--LAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       283 ~~~~~~--la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      +||++.  +++++.|        |+++||+.+
T Consensus       326 spDG~~~l~vt~~~d--------~~v~v~D~~  349 (373)
T d2madh_         326 AQDGGPDLYALSAGT--------EVLHIYDAG  349 (373)
T ss_pred             CCCCCEEEEEEeCCC--------CeEEEEECC
Confidence            999984  3556655        678888874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7e-17  Score=134.00  Aligned_cols=266  Identities=15%  Similarity=0.138  Sum_probs=171.5

Q ss_pred             eecccccEEEEEECCCCCEEEE-eeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe-CCCcEEE
Q 021319           16 YTGHKKKVHSVAWNCTGTKLAS-GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-GDKTVRL   93 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s-~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~D~~v~i   93 (314)
                      ...|.+.|+.|+|||||++|++ +..|+.|++|+++..... ........+...+..++|+|++. +|++++ .++.+.+
T Consensus        32 ~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~-~~~~~~~~~~~~p~~l~~spDg~-~l~v~~~~~~~v~~  109 (333)
T d1ri6a_          32 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-LTFAAESALPGSLTHISTDHQGQ-FVFVGSYNAGNVSV  109 (333)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-EEEEEEEECSSCCSEEEECTTSS-EEEEEETTTTEEEE
T ss_pred             EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc-EEEeeecccCCCceEEEEcCCCC-EEeecccCCCceee
Confidence            3468899999999999998855 556899999999764322 12222223445567899999864 555555 5789999


Q ss_pred             EeCCCCceeeeEEe---cCceEEEEEccCCCEEEEEeC-CCcEEEEEccCCeEee-------eeccCcceeeEEeccCCC
Q 021319           94 WDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIH-------RRKFGYEVNEIAWNMTGE  162 (314)
Q Consensus        94 wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~  162 (314)
                      |+............   ......+.++|+++.++++.. +..+.+|+........       ....+.....+++++++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~  189 (333)
T d1ri6a_         110 TRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  189 (333)
T ss_dssp             EEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             eccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence            98776654433322   233456789999999887765 4568889876543221       122334567889999988


Q ss_pred             eEEEEc-CCceEEEEeCCCCCce----eeee------ecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEEE---E
Q 021319          163 MFFLTT-GNGTVEVLTYPSLRPL----DTVV------AHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCV---R  227 (314)
Q Consensus       163 ~~~~~~-~~g~~~~~~~~~~~~~----~~~~------~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~---~  227 (314)
                      ..+... ..+...++........    ....      .....+..+++++++++++ .+..++.+.+|++......   .
T Consensus       190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (333)
T d1ri6a_         190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  269 (333)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE
Confidence            876654 5566677765432211    1111      1223467789999998755 4556689999998654322   2


Q ss_pred             EeeecccCeEEEEEccCCcEEEEec-CCceEEEE--ECCCCCe--EEEEeccCccceeEEc
Q 021319          228 TFTKLEWPVRTISFSHTGDYIASAS-EDLFIDIS--NVHTGRT--VHQIPCRAAMNSVEWN  283 (314)
Q Consensus       228 ~~~~~~~~v~~~~~sp~~~~l~s~s-~d~~v~v~--~~~~~~~--~~~~~~~~~i~~v~~~  283 (314)
                      ........+..++|+|||++|++++ .++.|.+|  |..+|++  +..++....-.+|.++
T Consensus       270 ~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~~p~~v~~~  330 (333)
T d1ri6a_         270 GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVN  330 (333)
T ss_dssp             EEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEE
T ss_pred             EEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccCCCCCcEEEEE
Confidence            2223344567899999999987765 56889998  5567654  3334444444455443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=1.1e-18  Score=145.51  Aligned_cols=248  Identities=9%  Similarity=-0.002  Sum_probs=168.1

Q ss_pred             cccccEEEEEECCCCCEE-EEeeCCCcEEEeecCCCCCCceeeEEee----cCCCCEEEEEEcCCCCCEEEEEe------
Q 021319           18 GHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELR----GHADSVDQLCWDPKHADLIATAS------   86 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l-~s~~~D~~v~iw~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~------   86 (314)
                      .|...+.+++|+|||+++ ++++.++.|++||+.+..  .+......    .+...+..++++|++. .++.++      
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~--~~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~  113 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--NTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRL  113 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEEC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe--eeeeecccccccccCCceEEEEEecCCC-EEEEEecCCcce
Confidence            345668899999999986 566689999999987632  11111111    1122355788999864 454443      


Q ss_pred             ------CCCcEEEEeCCCCceeeeEEe---cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEe
Q 021319           87 ------GDKTVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (314)
Q Consensus        87 ------~D~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  157 (314)
                            .+..+.+||..+++.......   ......+.+.+++..++.   +..+.+|++.+.+.+...........+.+
T Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (346)
T d1jmxb_         114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYS  190 (346)
T ss_dssp             SSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBC
T ss_pred             eeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCCccceEE
Confidence                  478889999877664433221   122233555666665543   35689999988877766655444444445


Q ss_pred             ccCCCeEEE--------------------------EcCCceEEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEee
Q 021319          158 NMTGEMFFL--------------------------TTGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGS  210 (314)
Q Consensus       158 ~~~~~~~~~--------------------------~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~~  210 (314)
                      +|++..+..                          ......+.+|+........ ....|...+..+.+++++.+++...
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (346)
T d1jmxb_         191 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV  270 (346)
T ss_dssp             CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE
T ss_pred             eccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec
Confidence            554433221                          1223445556665544332 3345677788899999988887765


Q ss_pred             CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319          211 ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC  273 (314)
Q Consensus       211 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~  273 (314)
                       ++.|.+||..+++.+..+. +...+.+++|+|||++|++++.|+.|.+||+.+++.+.++..
T Consensus       271 -~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         271 -LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             -ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             -CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence             4579999999999887775 445688999999999999999999999999999999988864

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=1e-17  Score=140.57  Aligned_cols=269  Identities=12%  Similarity=0.045  Sum_probs=175.6

Q ss_pred             EEEECCCCCEEEEe-----eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEE---------EeCCCc
Q 021319           25 SVAWNCTGTKLASG-----SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT---------ASGDKT   90 (314)
Q Consensus        25 ~v~~s~~g~~l~s~-----~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s---------~~~D~~   90 (314)
                      -.+.+|||++++..     ..+..|.+||..+.   ... ..+..+..  ..++|+|++..+.++         ++.|+.
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg---~~~-~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVI-GMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEE-EEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCC---cEE-EEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence            34568999987664     34667999998753   222 23444443  368999997655443         345789


Q ss_pred             EEEEeCCCCceeeeEEecC--------ceEEEEEccCCCEEEEEe--CCCcEEEEEccCCeEeeeeccCcc--------e
Q 021319           91 VRLWDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYE--------V  152 (314)
Q Consensus        91 v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~--------~  152 (314)
                      |++||..+++.........        ....+.|+|+++.+++..  .+..+.+||..+.+.+........        .
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD  159 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred             EEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCc
Confidence            9999999998776654322        123478999999988765  456789999998887766544321        2


Q ss_pred             eeEEeccCCCeEEEEcC-CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE--EEEe
Q 021319          153 NEIAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTF  229 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~  229 (314)
                      ..+.+++++..+++... .+.+...+......     .+...+....+.+++..++.++.++.+.+|++..+..  +...
T Consensus       160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  234 (355)
T d2bbkh_         160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV  234 (355)
T ss_dssp             EEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred             ceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEecc
Confidence            23444555554444322 22333333222111     1223344566778888888899999999999976543  2222


Q ss_pred             eec----------ccCeEEEEEccCCcEEEEecCC----------ceEEEEECCCCCeEEEEeccCccceeEEcCCCCe-
Q 021319          230 TKL----------EWPVRTISFSHTGDYIASASED----------LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNL-  288 (314)
Q Consensus       230 ~~~----------~~~v~~~~~sp~~~~l~s~s~d----------~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~-  288 (314)
                      ..+          ......++++|++..++.++.+          ..|.+||..+++.+..++....+.+++|+|+++. 
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~  314 (355)
T d2bbkh_         235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL  314 (355)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCE
T ss_pred             CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeE
Confidence            111          1123458899999888766543          4699999999999988887778999999999973 


Q ss_pred             -eEEEecCCcccccccceEEecccc
Q 021319          289 -LAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       289 -la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                       +++++.|        |+++||+.+
T Consensus       315 l~v~~~~d--------~~i~v~D~~  331 (355)
T d2bbkh_         315 LYALSTGD--------KTLYIHDAE  331 (355)
T ss_dssp             EEEEETTT--------TEEEEEETT
T ss_pred             EEEEECCC--------CEEEEEECC
Confidence             3455545        567777764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=4.7e-16  Score=130.24  Aligned_cols=251  Identities=12%  Similarity=0.067  Sum_probs=164.2

Q ss_pred             EEEEECCCCCEEEEe----------eCCCcEEEeecCCCCCCceeeEEeecCC-------CCEEEEEEcCCCCCEEEEE-
Q 021319           24 HSVAWNCTGTKLASG----------SVDQTARVWHIEPHGHGKVKDIELRGHA-------DSVDQLCWDPKHADLIATA-   85 (314)
Q Consensus        24 ~~v~~s~~g~~l~s~----------~~D~~v~iw~~~~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~l~s~-   85 (314)
                      ..++|||||++|+.+          +.|+.|++||..+..  ...  .+..+.       .....++|+|++. .++.+ 
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~  124 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTA--DIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQ  124 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEE--EEEETTCCCCCBSCCGGGEEECTTSS-EEEEEE
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC--EEE--EEecCCcceeecCCCCceEEEecCCC-eeEEec
Confidence            468999999988764          347899999987643  111  222121       2234578999865 44433 


Q ss_pred             -eCCCcEEEEeCCCCceeeeEEecCc--------eEEEEEccCCCEEEEEe-CCCcEEEEEccCCeEeeeeccCcceeeE
Q 021319           86 -SGDKTVRLWDARSGKCSQQAELSGE--------NINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEI  155 (314)
Q Consensus        86 -~~D~~v~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~  155 (314)
                       +.+..+.+||..+++..........        ...+.++++++.+++.. .++.+.+++.......    ....+...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~  200 (355)
T d2bbkh_         125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE----DEFLINHP  200 (355)
T ss_dssp             CSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT----TSCBCSCC
T ss_pred             CCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce----ecceeeec
Confidence             4567899999999887665543322        22355666766665543 3334455544332211    11234445


Q ss_pred             EeccCCCeEEEEcCCceEEEEeCCCCCce--eeeeec----------ccceEEEEECCCCCEEEEeeCC----------C
Q 021319          156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPL--DTVVAH----------TAGCYCIAIDPMGRYFAVGSAD----------S  213 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~----------~~~i~~i~~~~~~~~l~t~~~d----------g  213 (314)
                      .+...+..++....++.+.+|+....+..  .....+          ......+++++++..++....+          .
T Consensus       201 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d2bbkh_         201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR  280 (355)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred             cccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCC
Confidence            67778888888899999999988665421  111111          1233568899999987765443          3


Q ss_pred             eEEEeeCCCcEEEEEeeecccCeEEEEEccCCc--EEEEecCCceEEEEECCCCCeEEEEeccC-ccceeEEcC
Q 021319          214 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD--YIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNP  284 (314)
Q Consensus       214 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~s~d~~v~v~~~~~~~~~~~~~~~~-~i~~v~~~~  284 (314)
                      .|.+||..+++.+.++... ..+.+++|+|||+  ++++++.|+.|+|||..+++.++.+...+ .-..|.+.+
T Consensus       281 ~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             EEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred             eEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence            6999999999888777543 3578999999997  45678889999999999999999886433 334444433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.76  E-value=9e-15  Score=123.26  Aligned_cols=251  Identities=12%  Similarity=-0.009  Sum_probs=160.8

Q ss_pred             EEEECCCCCEEEEee----------CCCcEEEeecCCCCCCceeeEEeecCCCCE-------EEEEEcCCCCCEEE-EEe
Q 021319           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGHADSV-------DQLCWDPKHADLIA-TAS   86 (314)
Q Consensus        25 ~v~~s~~g~~l~s~~----------~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v-------~~l~~~~~~~~~l~-s~~   86 (314)
                      .++|+|||++|++++          .++.|++||..+..    ....+..+....       ..+.|++++..+.+ ...
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~  145 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL----PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA  145 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCc----EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc
Confidence            789999999998875          35789999987642    112233333332       34566776544332 334


Q ss_pred             CCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEE-EEEeCCCcEEEEEccCCeEeeeeccC-------cceeeEEec
Q 021319           87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFG-------YEVNEIAWN  158 (314)
Q Consensus        87 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~  158 (314)
                      .++.+.+|+....+.....   .....+.++|+++.+ ++.+.|+.+.+|+....+........       .......+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (373)
T d2madh_         146 AGPAVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             CCCceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC
Confidence            4677888887766543322   234567788998766 56788999999998876655432211       112223334


Q ss_pred             cCCCeEEEEcCCceEEEEeCCCCCce--eeeee----------cccceEEEEECCCCCEE----------EEeeCCCeEE
Q 021319          159 MTGEMFFLTTGNGTVEVLTYPSLRPL--DTVVA----------HTAGCYCIAIDPMGRYF----------AVGSADSLVS  216 (314)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~----------~~~~i~~i~~~~~~~~l----------~t~~~dg~i~  216 (314)
                      +++ .++....++.+.+++.......  .....          .......+++++++..+          ++...++.+.
T Consensus       223 ~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~  301 (373)
T d2madh_         223 KSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             CCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEE
Confidence            433 3445556677777766543211  11111          11123345555555543          4556677899


Q ss_pred             EeeCCCcEEEEEeeecccCeEEEEEccCCcE--EEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcC
Q 021319          217 LWDISEMLCVRTFTKLEWPVRTISFSHTGDY--IASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNP  284 (314)
Q Consensus       217 vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~  284 (314)
                      +||..+++.+..+. +...+..++|+|||+.  +++++.|+.|+|||+.+++.++.+. +....+.|+..+
T Consensus       302 ~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         302 SVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             EEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            99999998887764 5556889999999984  4688999999999999999999886 445566666543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=5.4e-15  Score=124.80  Aligned_cols=278  Identities=10%  Similarity=-0.035  Sum_probs=168.5

Q ss_pred             ccccEEEEEECCCCCE---EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEE---------e
Q 021319           19 HKKKVHSVAWNCTGTK---LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA---------S   86 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~---l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~---------~   86 (314)
                      +.+....++..++++.   .++...++..++|-++... .... ..+.++..+  .+.|+|++..+.++.         +
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~-~~~~-~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~   93 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGC-GVTL-GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTT-TEEE-EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCC-CcEE-EEEeCCCCC--cceECCCCCEEEEEcccCccccccc
Confidence            3444555566788875   2335567776666443322 2222 234445444  578999865443322         3


Q ss_pred             CCCcEEEEeCCCCceeeeEEecC--------ceEEEEEccCCCEEEEEe-CCCcEEEEEccCCeEeeeeccCcceeeEEe
Q 021319           87 GDKTVRLWDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAW  157 (314)
Q Consensus        87 ~D~~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  157 (314)
                      .|++|++||..+++.........        ....++|+|||++++++. .++.+.+||+.+.+............  ..
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~  171 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--IH  171 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--CE
T ss_pred             cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--Ec
Confidence            47889999999998877665422        123588999999998776 57899999999988877654432111  11


Q ss_pred             ccCCCeEEEEcCCceEEEEeCCCCCcee------eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE--EEe
Q 021319          158 NMTGEMFFLTTGNGTVEVLTYPSLRPLD------TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV--RTF  229 (314)
Q Consensus       158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~  229 (314)
                      ......++..+.+|.+..+.........      ....+...+....+++++..+.+.+  +.+.++++......  ...
T Consensus       172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~v~~~~~~~~~~~~~~~~  249 (368)
T d1mdah_         172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA--SSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS--SCCEEEECCSSCCEEECCC
T ss_pred             cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC--CCEEEEeecCCceEEEeec
Confidence            1223344445566666666554322111      1122334455677888887766553  44566665443322  111


Q ss_pred             eec----------ccCeEEEEEccCCcEEEEecCC---------ceEEEEECCCCCeEEEEeccCccceeEEcCCCCee-
Q 021319          230 TKL----------EWPVRTISFSHTGDYIASASED---------LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL-  289 (314)
Q Consensus       230 ~~~----------~~~v~~~~~sp~~~~l~s~s~d---------~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l-  289 (314)
                      ...          ......++++|++..++....+         ..+.+||..+++.+..+.....+.+++|+||++.+ 
T Consensus       250 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~l  329 (368)
T d1mdah_         250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN  329 (368)
T ss_dssp             CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred             ccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEE
Confidence            111          0123457889998877655322         45899999999999888877789999999999743 


Q ss_pred             -EEEecCCcccccccceEEecccc
Q 021319          290 -AYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       290 -a~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                       ++...|        ++++||+.+
T Consensus       330 y~s~~~~--------~~v~v~D~~  345 (368)
T d1mdah_         330 YANSAGT--------EVLDIYDAA  345 (368)
T ss_dssp             EEEETTT--------TEEEEEESS
T ss_pred             EEEeCCC--------CeEEEEECC
Confidence             444434        577788764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.63  E-value=2.1e-15  Score=128.16  Aligned_cols=271  Identities=11%  Similarity=-0.002  Sum_probs=177.9

Q ss_pred             cccccEEEEEECCCCCEEEEe-eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE-----
Q 021319           18 GHKKKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV-----   91 (314)
Q Consensus        18 gH~~~V~~v~~s~~g~~l~s~-~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v-----   91 (314)
                      .|........++|||++|... ..+..|.++|+++...  ...+++ .+...+..++++|++....+.+..+..+     
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~--~~ii~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT--DKITHI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE--EEEEEC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcE--eeEEec-CCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            466677777788999987555 5788999999976421  111122 3566789999998765433333333333     


Q ss_pred             -------------EEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-cEEEEEccCCeEeeeeccCcceeeEEe
Q 021319           92 -------------RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAW  157 (314)
Q Consensus        92 -------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~  157 (314)
                                   ..+|..+.+...+.........+.++|+|+++++.+.+. .+..++..+.+....+........+.+
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence                         458888888877777777778899999999999887654 333334333322222211112223345


Q ss_pred             ccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEE-EEeeCCCeEEEeeCCCcEE-----------
Q 021319          158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF-AVGSADSLVSLWDISEMLC-----------  225 (314)
Q Consensus       158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~t~~~dg~i~vwd~~~~~~-----------  225 (314)
                      .++|++..+ ..++.+.+........+..+.. ...+..++++|||+++ +++..+++|.+||+.+...           
T Consensus       226 ~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~  303 (441)
T d1qnia2         226 VKAGNFKTI-GDSKVPVVDGRGESEFTRYIPV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT  303 (441)
T ss_dssp             HHTTCCBCC-TTCCCCEEECSSSCSSEEEECC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGG
T ss_pred             ecCCCEEEe-CCCCcEEEEcccCCceEEEEeC-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceE
Confidence            677775543 3455666665555555555544 3446789999999986 5677789999999876421           


Q ss_pred             EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC---------C-CeEEEE------eccCccceeEEcCCCCee
Q 021319          226 VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT---------G-RTVHQI------PCRAAMNSVEWNPKYNLL  289 (314)
Q Consensus       226 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~---------~-~~~~~~------~~~~~i~~v~~~~~~~~l  289 (314)
                      +.-...........+|+++|....|...|..|..|++..         . ..+.++      .|...+.+..++|+|++|
T Consensus       304 ~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l  383 (441)
T d1qnia2         304 IVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWL  383 (441)
T ss_dssp             EEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEE
T ss_pred             EEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEE
Confidence            111111122345678999999999999999999999742         1 122332      345578899999999999


Q ss_pred             EEEe
Q 021319          290 AYAG  293 (314)
Q Consensus       290 a~~~  293 (314)
                      ++++
T Consensus       384 ~s~~  387 (441)
T d1qnia2         384 VVLS  387 (441)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            9994

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=3.1e-14  Score=120.10  Aligned_cols=251  Identities=12%  Similarity=0.018  Sum_probs=148.0

Q ss_pred             EEEECCCCCEEEEee----------CCCcEEEeecCCCCCCceeeEEeecC-----CCCEEEEEEcCCCCCEEEEEeCCC
Q 021319           25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASGDK   89 (314)
Q Consensus        25 ~v~~s~~g~~l~s~~----------~D~~v~iw~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~l~s~~~D~   89 (314)
                      .++|+|||+.|+..+          .|+.|++||..+..  ....+.+..+     ......++|+|++..++++...++
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc--EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            588999999888754          47889999987642  2222222211     112345889999766655556789


Q ss_pred             cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-------ccCcceeeEEeccCCC
Q 021319           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-------KFGYEVNEIAWNMTGE  162 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~  162 (314)
                      .+.+||+.+++.............  +......++..+.|+.+.++++.........       ..........+.+++.
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  224 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSASCFHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM  224 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSSCCCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             eEEEEECCCCcEeEEeeccCcceE--ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE
Confidence            999999999987776654332211  0111233344455566555554432211100       0111223344444443


Q ss_pred             eEEEEcCCceEEEEeCCCCCcee--eee----------ecccceEEEEECCCCCEEEEeeCC---------CeEEEeeCC
Q 021319          163 MFFLTTGNGTVEVLTYPSLRPLD--TVV----------AHTAGCYCIAIDPMGRYFAVGSAD---------SLVSLWDIS  221 (314)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~--~~~----------~~~~~i~~i~~~~~~~~l~t~~~d---------g~i~vwd~~  221 (314)
                      .+.  ...+.+.+++........  ...          ........+++++++..++....+         ..|.+||..
T Consensus       225 ~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~  302 (368)
T d1mdah_         225 LVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             EEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             EEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence            332  223334444433222111  000          011223457889988876654322         259999999


Q ss_pred             CcEEEEEeeecccCeEEEEEccCCc--EEEEecCCceEEEEECCCCCeEEEEeccCccceeEE
Q 021319          222 EMLCVRTFTKLEWPVRTISFSHTGD--YIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEW  282 (314)
Q Consensus       222 ~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~  282 (314)
                      +++.+.++... ..+..++|+|||+  ++++++.|+.|++||..+++.+..++....-+.|+.
T Consensus       303 t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         303 VGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             SCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred             CCcEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEE
Confidence            99888776543 4688899999997  356778899999999999999988876544555543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.53  E-value=1.9e-12  Score=112.49  Aligned_cols=272  Identities=11%  Similarity=0.119  Sum_probs=152.8

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEeeC---------CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEE
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGSV---------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI   82 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~---------D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l   82 (314)
                      ....+.+|...|.++.|||||++|+.++.         ++.+.|||++.+.     ...+..|...+..+.|+|++. .+
T Consensus        53 ~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-----~~~l~~~~~~~~~~~~SPDG~-~i  126 (470)
T d2bgra1          53 ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-----LITEERIPNNTQWVTWSPVGH-KL  126 (470)
T ss_dssp             CTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-----ECCSSCCCTTEEEEEECSSTT-CE
T ss_pred             chhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-----ccccccCCccccccccccCcc-ee
Confidence            33455677789999999999999998753         5678899987532     234677889999999999864 56


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeEEec-------------------CceEEEEEccCCCEEEEEeCCCc-EEEEEccCC--
Q 021319           83 ATASGDKTVRLWDARSGKCSQQAELS-------------------GENINITYKPDGTHIAVGNRDDE-LTILDVRKF--  140 (314)
Q Consensus        83 ~s~~~D~~v~iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~--  140 (314)
                      |.. .++.+.+|+..++...+.....                   +....+.|+|||+.|+....|.+ +..+.+...  
T Consensus       127 a~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~  205 (470)
T d2bgra1         127 AYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD  205 (470)
T ss_dssp             EEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS
T ss_pred             eEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeecc
Confidence            554 5678999999888654432111                   11234679999999998876543 433332100  


Q ss_pred             ------eE----------------ee--eecc---------------------CcceeeEEeccCCCeEEEEc-CC-c--
Q 021319          141 ------KP----------------IH--RRKF---------------------GYEVNEIAWNMTGEMFFLTT-GN-G--  171 (314)
Q Consensus       141 ------~~----------------~~--~~~~---------------------~~~~~~~~~~~~~~~~~~~~-~~-g--  171 (314)
                            ..                +.  ....                     ...+..+.|.+++..++... .. .  
T Consensus       206 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~  285 (470)
T d2bgra1         206 ESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS  285 (470)
T ss_dssp             TTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE
T ss_pred             CCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCce
Confidence                  00                00  0000                     01123456666665544432 11 1  


Q ss_pred             eEEEEeC--CCCCceeee-------------eecccceEEEEECCCCCEEEEeeCCCeEEEeeCC-CcEEEEEeeecccC
Q 021319          172 TVEVLTY--PSLRPLDTV-------------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWP  235 (314)
Q Consensus       172 ~~~~~~~--~~~~~~~~~-------------~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~~~~  235 (314)
                      .+.++..  .........             ..+........+++++.+++.+..+|..++|.+. .+.....+...++.
T Consensus       286 ~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~  365 (470)
T d2bgra1         286 VMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWE  365 (470)
T ss_dssp             EEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSC
T ss_pred             EEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCee
Confidence            2233332  221111000             0111111222223334456677788876666442 33334555566777


Q ss_pred             eEEEEEccCCcE-EEEecCCc----eEEEEE--CCCCCeEEEEe-----ccCccceeEEcCCCCeeEE
Q 021319          236 VRTISFSHTGDY-IASASEDL----FIDISN--VHTGRTVHQIP-----CRAAMNSVEWNPKYNLLAY  291 (314)
Q Consensus       236 v~~~~~sp~~~~-l~s~s~d~----~v~v~~--~~~~~~~~~~~-----~~~~i~~v~~~~~~~~la~  291 (314)
                      |..+ ++++++. .++++.++    .-++|.  +..+.....+.     +...+.+++|||++++++.
T Consensus       366 v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~  432 (470)
T d2bgra1         366 VIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL  432 (470)
T ss_dssp             EEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred             EEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEE
Confidence            8776 4444443 34554432    224444  44444444432     3456889999999998763

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.45  E-value=2.5e-13  Score=115.26  Aligned_cols=265  Identities=11%  Similarity=0.013  Sum_probs=165.6

Q ss_pred             EEEeeCCCcEEEeecCCCCCCceeeEE----------------------------eecCCCCEEEEEEcCCCCCEEEEEe
Q 021319           35 LASGSVDQTARVWHIEPHGHGKVKDIE----------------------------LRGHADSVDQLCWDPKHADLIATAS   86 (314)
Q Consensus        35 l~s~~~D~~v~iw~~~~~~~~~~~~~~----------------------------~~~h~~~v~~l~~~~~~~~~l~s~~   86 (314)
                      ++|++.+|.|++|++.+..  .+..+.                            ...|-.........|++..++++..
T Consensus        14 f~Sgg~sG~V~V~dlpS~r--~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMR--ELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTE--EEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCCc--EEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            7889999999999986431  111110                            0012222333333566655567777


Q ss_pred             CCCcEEEEeCCCCceeeeEEe--cCceEEEEEccCCCE--EEEEeCCC-----------------cEEEEEccCCeEeee
Q 021319           87 GDKTVRLWDARSGKCSQQAEL--SGENINITYKPDGTH--IAVGNRDD-----------------ELTILDVRKFKPIHR  145 (314)
Q Consensus        87 ~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~--l~~~~~d~-----------------~i~i~d~~~~~~~~~  145 (314)
                      .+.+|.++|+.++++......  ....-.++++|+++.  ++..+.+.                 .+..+|..+.+...+
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            899999999999988776654  345567899999984  44444332                 235578877777777


Q ss_pred             eccCcceeeEEeccCCCeEEEEcCCc-eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319          146 RKFGYEVNEIAWNMTGEMFFLTTGNG-TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML  224 (314)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~  224 (314)
                      ...+.....+.++|+|+.+++++.+. .+..++..+.+....+... .....+++.|+|+++..++ ++.+.+++.....
T Consensus       172 I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~dGk~~~v~~-~~v~vvd~~~~~~  249 (441)
T d1qnia2         172 VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGD-SKVPVVDGRGESE  249 (441)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHTTCCBCCTT-CCCCEEECSSSCS
T ss_pred             EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC-CccceEEEecCCCEEEeCC-CCcEEEEcccCCc
Confidence            77777788999999999988877553 2222222222222222111 1122345678899876654 6777888776666


Q ss_pred             EEEEeeecccCeEEEEEccCCcEEE-EecCCceEEEEECCCCCeE--------EEEec----cCccceeEEcCCCCeeEE
Q 021319          225 CVRTFTKLEWPVRTISFSHTGDYIA-SASEDLFIDISNVHTGRTV--------HQIPC----RAAMNSVEWNPKYNLLAY  291 (314)
Q Consensus       225 ~~~~~~~~~~~v~~~~~sp~~~~l~-s~s~d~~v~v~~~~~~~~~--------~~~~~----~~~i~~v~~~~~~~~la~  291 (314)
                      .+..+...+. ...+.++|||++++ ++..|+.|.|||+.+....        ..+..    .-...-.+|.++++.+.+
T Consensus       250 v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts  328 (441)
T d1qnia2         250 FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT  328 (441)
T ss_dssp             SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred             eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEc
Confidence            6666665554 46799999999875 5678999999998653211        00000    011233578888877776


Q ss_pred             EecCCcccccccceEEecccc
Q 021319          292 AGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       292 ~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ...|.        ++.-|+++
T Consensus       329 ~~~ds--------~v~kw~~~  341 (441)
T d1qnia2         329 LFIDS--------QVCKWNIA  341 (441)
T ss_dssp             ETTTT--------EEEEEEHH
T ss_pred             ccccc--------eEEEeccc
Confidence            66664        55667653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=1.4e-09  Score=86.54  Aligned_cols=236  Identities=10%  Similarity=0.019  Sum_probs=150.7

Q ss_pred             ccEEEEEECCCCCEEEEe-eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319           21 KKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG   99 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~-~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~   99 (314)
                      ..-+.|+++++|+..++. +..+.+..++....   ........+ ......+++++++ +++++....+.+++++..+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~---~~~~~~~~~-~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGST---GTTVLPFNG-LYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC-------CEEECCCCS-CCSCCCEEECTTC-CEEEEETTTEEEEECTTCSC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc---eEEEeccCC-ccCceEEEEcCCC-CEEEeeeeeceeeeeeeccc
Confidence            345799999999976654 55677777655431   111112222 2234677888864 67777777777777765555


Q ss_pred             ceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCCceEEEEeC
Q 021319          100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY  178 (314)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (314)
                      ...........+..+++.++++++++-.....+..++......... .........+++.++++.+++...++.+..++.
T Consensus        89 ~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          89 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             CEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             eeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccc
Confidence            4443333334567789999999888776677777777644322111 111234567888899998888888888888886


Q ss_pred             CCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-cccCeEEEEEccCCcEEEEecCCceE
Q 021319          179 PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTISFSHTGDYIASASEDLFI  257 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~s~d~~v  257 (314)
                      ...............+..++++++|+++++....+.|..++...... ..+.. .-.....|+++++|.++++-..+.+|
T Consensus       169 ~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI  247 (260)
T d1rwia_         169 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  247 (260)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             ccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEECCCCEE
Confidence            54432222223445678999999999988888888888888754422 22211 11346789999999888876767767


Q ss_pred             EEEEC
Q 021319          258 DISNV  262 (314)
Q Consensus       258 ~v~~~  262 (314)
                      ...+.
T Consensus       248 ~~i~~  252 (260)
T d1rwia_         248 VKLTS  252 (260)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            65543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.26  E-value=8.5e-09  Score=86.11  Aligned_cols=238  Identities=14%  Similarity=0.155  Sum_probs=137.6

Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC-ceeee--EEecCceEEEEEccCCCEEEEEe---CCCcEEEEEccC
Q 021319           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-KCSQQ--AELSGENINITYKPDGTHIAVGN---RDDELTILDVRK  139 (314)
Q Consensus        66 ~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~  139 (314)
                      ...+..|+++|++ +.|.++.. +.+..|.+... .....  .........+.++++++.+.+..   ..+.+..+.+..
T Consensus        39 ~~~~s~la~s~d~-~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          39 DEPISWMTFDHER-KNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTS-SEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCEEEEcCCC-CEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3445679999985 46655544 45666655432 22211  12223344466777887544322   233444333211


Q ss_pred             ------------C----eEe--eeeccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCCCCcee---eee--ecccceE
Q 021319          140 ------------F----KPI--HRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLD---TVV--AHTAGCY  195 (314)
Q Consensus       140 ------------~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~---~~~--~~~~~i~  195 (314)
                                  .    .+.  ...+....+.++.++|++++++++. ....+.+|+......+.   ...  .....+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence                        0    011  1112233467899999999777764 45688888764332221   111  2345789


Q ss_pred             EEEECCCCCEEE-EeeCCCeEEEeeCCCcE--EEEE---eee--------------cccCeEEEEEccCCcEEEEecC--
Q 021319          196 CIAIDPMGRYFA-VGSADSLVSLWDISEML--CVRT---FTK--------------LEWPVRTISFSHTGDYIASASE--  253 (314)
Q Consensus       196 ~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~--~~~~---~~~--------------~~~~v~~~~~sp~~~~l~s~s~--  253 (314)
                      .++|+|+++++. +...+++|.+|++....  .+..   ...              .......+.++|+|++|+++..  
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            999999999875 45567899999986542  2222   110              0112457899999999987742  


Q ss_pred             ----CceEEEEECCCCCeEEEEe-------ccCccceeEEcC-CCCeeEEEecCCcccccccceEEecccc
Q 021319          254 ----DLFIDISNVHTGRTVHQIP-------CRAAMNSVEWNP-KYNLLAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       254 ----d~~v~v~~~~~~~~~~~~~-------~~~~i~~v~~~~-~~~~la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                          ...|..+++.....+....       ....-+.++++| ++++|+.++.+       +|++.||.++
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~-------s~~v~v~~~~  340 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-------EGWLEIYRWK  340 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-------SCEEEEEEEE
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC-------CCeEEEEEEe
Confidence                2347777765433222211       134568899998 78988777654       4678887653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=3.1e-08  Score=78.58  Aligned_cols=220  Identities=12%  Similarity=0.159  Sum_probs=129.6

Q ss_pred             ecCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CCcEEE--EEc
Q 021319           63 RGHADSVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDELTI--LDV  137 (314)
Q Consensus        63 ~~h~~~v~~l~~~~~~~~~l~s~~~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i--~d~  137 (314)
                      ..+...+..-+|+|++..+..+....+  .+.+.+...+................|+|+|+.++.... .+...+  +..
T Consensus        35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            345677888999999764444444433  355556666665555555666777889999999987654 333222  222


Q ss_pred             cCCeEeeeeccCcceeeEEeccCCCeEEEE-cCCce--EEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC-
Q 021319          138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGT--VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS-  213 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~--~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-  213 (314)
                      ...................+++.+...+.. ..+|.  +...+..... ...+...........++|+++.++..+.++ 
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  193 (269)
T d2hqsa1         115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGG  193 (269)
T ss_dssp             TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             ccccceeeeeccccccccccccccccceecccccCCceEeeeeccccc-ceeeecccccccccccccccceeEEEeecCC
Confidence            222222222223333344566666554443 34444  4444443332 222333445567788999999887665554 


Q ss_pred             e--EEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecC---CceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319          214 L--VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE---DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK  285 (314)
Q Consensus       214 ~--i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~---d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~  285 (314)
                      .  +.+.|......  .............|||||+.||-.+.   ...+.++++..+...+.....+.+...+|||-
T Consensus       194 ~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         194 QQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             ceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence            3  44455544433  22234445667889999999875543   35688899876655433334556888999993

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=2.6e-08  Score=79.07  Aligned_cols=228  Identities=14%  Similarity=0.134  Sum_probs=133.5

Q ss_pred             cceeeecccccEEEEEECCCCCEEEEee-CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319           12 HSREYTGHKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT   90 (314)
Q Consensus        12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~-~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~   90 (314)
                      ..+.+..+...+.+-+|||||+.||-.. .++.-.+|........   ...+..+.+......|+|++..++.....++.
T Consensus        30 ~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~  106 (269)
T d2hqsa1          30 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKTGS  106 (269)
T ss_dssp             SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc---eeEEeeeecccccceecCCCCeeeEeeecCCc
Confidence            3455556677888999999999988654 3343344444332211   22345677888899999987655544444444


Q ss_pred             EEEEe--CCCCceeeeEEecCceEEEEEccCCCEEEEE-eCCCc--EEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319           91 VRLWD--ARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF  165 (314)
Q Consensus        91 v~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      ..++.  ....................+++++..+... ..++.  +...++...................|+|++..++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  186 (269)
T d2hqsa1         107 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV  186 (269)
T ss_dssp             CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEE
T ss_pred             cceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeE
Confidence            44333  2222222222223334445667777665544 44544  4555555543333333344556678999999887


Q ss_pred             EEcC-CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC---CCeEEEeeCCCcEEEEEeeecccCeEEEEE
Q 021319          166 LTTG-NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEMLCVRTFTKLEWPVRTISF  241 (314)
Q Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  241 (314)
                      .... .+...++.............+........|+|||+.|+-.+.   ...+.++++..... ..+......+...+|
T Consensus       187 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~W  265 (269)
T d2hqsa1         187 MVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAW  265 (269)
T ss_dssp             EEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEE
T ss_pred             EEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEe
Confidence            7654 344444443322222233344555677899999998874433   23688899876554 445556667788899


Q ss_pred             cc
Q 021319          242 SH  243 (314)
Q Consensus       242 sp  243 (314)
                      ||
T Consensus       266 SP  267 (269)
T d2hqsa1         266 SP  267 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            98

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=4e-09  Score=83.79  Aligned_cols=226  Identities=10%  Similarity=-0.031  Sum_probs=142.0

Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeee-EEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee
Q 021319           67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR  145 (314)
Q Consensus        67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  145 (314)
                      -....+++++++.-+++..+..+.+..++......... ......+..+++.++++++++....+.+.+++......+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            34578899987543344445567777776554332211 11122345688899998877766666666665555444433


Q ss_pred             eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE
Q 021319          146 RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC  225 (314)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~  225 (314)
                      .........+++.++++.+++-.....+..++................+..++++++++.+++...++.|..+|......
T Consensus        94 ~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          94 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             eeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence            33334567889999998888776677776666544322111112224567899999999888888888999999875543


Q ss_pred             EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc--CccceeEEcCCCCeeEEEe
Q 021319          226 VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--AAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       226 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~--~~i~~v~~~~~~~~la~~~  293 (314)
                      .......-.....|+++++|.++++-...+.|..++..... ...+...  ....++++.++++++++-.
T Consensus       174 ~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         174 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEG
T ss_pred             eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEEC
Confidence            32211222346789999999999988888888888765432 2222211  3467899999988776533

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.22  E-value=2.9e-08  Score=80.93  Aligned_cols=240  Identities=8%  Similarity=-0.028  Sum_probs=144.7

Q ss_pred             ccccEEEEEECCCCCEEEEeeC-------CCcEEEeecCCCCCCceeeEEe---ecCCCCEEEEEEcCCCCCEEEEEeCC
Q 021319           19 HKKKVHSVAWNCTGTKLASGSV-------DQTARVWHIEPHGHGKVKDIEL---RGHADSVDQLCWDPKHADLIATASGD   88 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~~-------D~~v~iw~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~D   88 (314)
                      .-.....++|.++|++.++...       ++.|..|+.+...   ......   .........+.+.+++ ++++.+...
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~---~~~~~~~~~~~~~g~P~Gl~~~~dg-~~l~vad~~   91 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---KTVICKPEVNGYGGIPAGCQCDRDA-NQLFVADMR   91 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---EEEEECCEETTEECCEEEEEECSSS-SEEEEEETT
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCc---EEEEECCccccCCCcceeEEEeCCC-CEEEEEECC
Confidence            3344667889999998776432       3567667665422   111111   1112235679999875 466667676


Q ss_pred             CcEEEEeCCCCceeeeE-EecCc----eEEEEEccCCCEEEEEeC---------------CCcEEEEEccCCeEeeeecc
Q 021319           89 KTVRLWDARSGKCSQQA-ELSGE----NINITYKPDGTHIAVGNR---------------DDELTILDVRKFKPIHRRKF  148 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~---------------d~~i~i~d~~~~~~~~~~~~  148 (314)
                      ..+...|...+...... ...+.    ...+.+.++|++.++-..               .+.+..++... +.......
T Consensus        92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~  170 (314)
T d1pjxa_          92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTA  170 (314)
T ss_dssp             TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEE
T ss_pred             CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCC
Confidence            77888888655322211 11111    234778899987776422               12233333221 11111111


Q ss_pred             CcceeeEEeccCCC-----eEEEEcCCceEEEEeCCCCCceee------eee-cccceEEEEECCCCCEEEEeeCCCeEE
Q 021319          149 GYEVNEIAWNMTGE-----MFFLTTGNGTVEVLTYPSLRPLDT------VVA-HTAGCYCIAIDPMGRYFAVGSADSLVS  216 (314)
Q Consensus       149 ~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~------~~~-~~~~i~~i~~~~~~~~l~t~~~dg~i~  216 (314)
                      -...+.++|+++++     ++++-...+.+..|++.....+..      +.. ....+-.++++.+|++.++....+.|.
T Consensus       171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence            12346788888765     455557788888887643322211      111 122456899999999888877889999


Q ss_pred             EeeCCCcEEEEEeeecccCeEEEEEccCCc-EEEEecCCceEEEEECC
Q 021319          217 LWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVH  263 (314)
Q Consensus       217 vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s~d~~v~v~~~~  263 (314)
                      +||.+.++.+..+........+++|.|+++ +.+|.+.++.|...++.
T Consensus       251 ~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            999887765555554445678999999987 55677788888888764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.20  E-value=2.9e-08  Score=80.50  Aligned_cols=224  Identities=11%  Similarity=0.022  Sum_probs=146.4

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC--
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG--   99 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~--   99 (314)
                      .+..++++|||+++++...+++|..|+.+  .  ...  .+......+.++++.+++ +++++...++.+..++....  
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g--~~~--~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD--G--NQQ--IHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT--C--CEE--EEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC--C--CEE--EEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEeccccc
Confidence            58899999999999999999988777643  2  221  234456778999999985 68888888888888775433  


Q ss_pred             ceeeeEEe--cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc---------C--cceeeEEeccCCCeEEE
Q 021319          100 KCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---------G--YEVNEIAWNMTGEMFFL  166 (314)
Q Consensus       100 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~--~~~~~~~~~~~~~~~~~  166 (314)
                      ........  ......+.+.++++++++...++.+..+|............         .  .....+.+. .+..+++
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~-~~~l~~~  180 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF-GNFLYVS  180 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE-TTEEEEE
T ss_pred             ceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc-CCceeee
Confidence            22222221  22345688899999888888888888888776543211110         0  123344443 2345566


Q ss_pred             EcCCceEEEEeCCCCCcee--eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEE--
Q 021319          167 TTGNGTVEVLTYPSLRPLD--TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISF--  241 (314)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~--  241 (314)
                      ....+.+..++........  ........+..++++++|++.++...++.|..++...... +......-....+++|  
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~  260 (302)
T d2p4oa1         181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQ  260 (302)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECC
T ss_pred             cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcC
Confidence            6778888888765433221  1222344567899999999888888889999998764322 2222223345789999  


Q ss_pred             -ccCCcEEEEecC
Q 021319          242 -SHTGDYIASASE  253 (314)
Q Consensus       242 -sp~~~~l~s~s~  253 (314)
                       +||++.|..++.
T Consensus       261 ~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         261 TEGDCTAIYVVTN  273 (302)
T ss_dssp             STTTTTEEEEEEC
T ss_pred             CCCCCCEEEEECC
Confidence             678887765544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.15  E-value=1.6e-10  Score=100.08  Aligned_cols=141  Identities=13%  Similarity=0.144  Sum_probs=106.6

Q ss_pred             eeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee-----eecccceEEEEECCCCCEEEEeeC---------CCeEEEe
Q 021319          153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-----VAHTAGCYCIAIDPMGRYFAVGSA---------DSLVSLW  218 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~t~~~---------dg~i~vw  218 (314)
                      ..+.|.++++++.  ..++.+.+|+..+.+....+     ..|...+.+..|||||++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            4567888876544  45778999998877654333     345567999999999999987743         5678999


Q ss_pred             eCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-------------------cCccce
Q 021319          219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-------------------RAAMNS  279 (314)
Q Consensus       219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-------------------~~~i~~  279 (314)
                      |+.+++. ..+..+...+..+.|||||+++|.. .+..+.+++..+++..+....                   .+....
T Consensus        98 d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            9998864 4567777889999999999999985 566799999988876543211                   123467


Q ss_pred             eEEcCCCCeeEEEecCCc
Q 021319          280 VEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       280 v~~~~~~~~la~~~~d~~  297 (314)
                      +.||||++.||+...|..
T Consensus       176 ~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             EEECTTSSEEEEEEEECT
T ss_pred             cEECCCCCccceeEecCC
Confidence            889999999999987644

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.15  E-value=5.8e-08  Score=79.12  Aligned_cols=230  Identities=13%  Similarity=0.180  Sum_probs=145.1

Q ss_pred             CEEEEEEcCCCCCEEEEEeC-------CCcEEEEeCCCCceeeeEE-----ecCceEEEEEccCCCEEEEEeCCCcEEEE
Q 021319           68 SVDQLCWDPKHADLIATASG-------DKTVRLWDARSGKCSQQAE-----LSGENINITYKPDGTHIAVGNRDDELTIL  135 (314)
Q Consensus        68 ~v~~l~~~~~~~~~l~s~~~-------D~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~  135 (314)
                      .....+|++++ ++.++...       +++|..||..++.......     ..+....+.+.++++.++++.....+..+
T Consensus        19 g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCC-CEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            35667888875 45544322       4678899988776433221     12235679999999988888877788888


Q ss_pred             EccCCeEeeee-cc-C---cceeeEEeccCCCeEEEEcC---------------CceEEEEeCCCCCceeeeeecccceE
Q 021319          136 DVRKFKPIHRR-KF-G---YEVNEIAWNMTGEMFFLTTG---------------NGTVEVLTYPSLRPLDTVVAHTAGCY  195 (314)
Q Consensus       136 d~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~---------------~g~~~~~~~~~~~~~~~~~~~~~~i~  195 (314)
                      |.......... .. +   ...+.+++.++|..+++-..               .|.+..++.. . ....+.......+
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g-~~~~~~~~~~~pN  175 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMIQVDTAFQFPN  175 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEEEEEEEESSEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-C-ceeEeeCCcceee
Confidence            87654322111 11 1   13567889999988876432               2344444332 1 2223333334567


Q ss_pred             EEEECCCCC-----EEEEeeCCCeEEEeeCCCcEEEE---Ee---eec-ccCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319          196 CIAIDPMGR-----YFAVGSADSLVSLWDISEMLCVR---TF---TKL-EWPVRTISFSHTGDYIASASEDLFIDISNVH  263 (314)
Q Consensus       196 ~i~~~~~~~-----~l~t~~~dg~i~vwd~~~~~~~~---~~---~~~-~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~  263 (314)
                      .++|+|++.     +.++-+..+.|..||+.....+.   .+   ... ......+++.++|++.++....+.|.+++..
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            889988764     44555667889999875322111   11   111 1234679999999988888788999999998


Q ss_pred             CCCeEEEEec-cCccceeEEcCCCC-eeEEEecCCcccc
Q 021319          264 TGRTVHQIPC-RAAMNSVEWNPKYN-LLAYAGDDKNKYQ  300 (314)
Q Consensus       264 ~~~~~~~~~~-~~~i~~v~~~~~~~-~la~~~~d~~~~~  300 (314)
                      .++.+..+.. ....++++|.|+++ ++++.+..+.+|.
T Consensus       256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence            8877666654 34678999999986 4565555554443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.10  E-value=9.7e-07  Score=71.85  Aligned_cols=228  Identities=11%  Similarity=0.078  Sum_probs=147.3

Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE-EecCceEEEEEccCCCEEEEEeCC----CcEEEEEccC
Q 021319           65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRD----DELTILDVRK  139 (314)
Q Consensus        65 h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~  139 (314)
                      ....+..++|++++ ++.++-...+.|..||...+...... ........+++.++|+++++...+    +.+...+...
T Consensus        38 ~~~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          38 KGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             SCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             CCcCcEeCEECCCC-CEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            34456789999875 67777778899999998776544332 334566789999999988776432    2345555444


Q ss_pred             CeEeeee---ccCcceeeEEeccCCCeEEEEcC------CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-Ee
Q 021319          140 FKPIHRR---KFGYEVNEIAWNMTGEMFFLTTG------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VG  209 (314)
Q Consensus       140 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~  209 (314)
                      .......   ......+.+++.++|.+++....      .+.+..++.. ...+..+...-...+.++|+|+++.|. +-
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEEec
Confidence            3322212   22344678889999987776543      2334444332 223333333334568899999998664 44


Q ss_pred             eCCCeEEEeeCCCc----EEEE-Ee-ee--cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc-------
Q 021319          210 SADSLVSLWDISEM----LCVR-TF-TK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-------  274 (314)
Q Consensus       210 ~~dg~i~vwd~~~~----~~~~-~~-~~--~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~-------  274 (314)
                      +..+.|..||+...    .... .. ..  .......+++.++|++.++....+.|.+++. .|+.+..+..-       
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~  274 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM  274 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcC
Confidence            56789999987532    1111 11 11  1122567999999999888889999999995 78888877532       


Q ss_pred             CccceeEEcCCCCeeEEEecC
Q 021319          275 AAMNSVEWNPKYNLLAYAGDD  295 (314)
Q Consensus       275 ~~i~~v~~~~~~~~la~~~~d  295 (314)
                      ..+++++|.|....+.+...|
T Consensus       275 ~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         275 LRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             CBCCEEEECTTSCEEEEEEEC
T ss_pred             ceeeeEEEeCCCCEEEEEcCC
Confidence            247899999987776655544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.10  E-value=7.5e-07  Score=71.05  Aligned_cols=238  Identities=14%  Similarity=0.132  Sum_probs=154.7

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee----cCCCCEEEEEEcCCCCCEEEE-EeCCCcEEEEe
Q 021319           21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR----GHADSVDQLCWDPKHADLIAT-ASGDKTVRLWD   95 (314)
Q Consensus        21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s-~~~D~~v~iwd   95 (314)
                      ..-+.|+++++|+.+++-.....|++|+.+-   ..+......    +.......+++.+..+..++. .+.++.|..++
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCCC---CEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            3578999999999988877788999998642   111111111    111233455655554444443 34456777777


Q ss_pred             CCCCceeeeEEe--cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee---ccCcceeeEEeccCCCeEEEEcCC
Q 021319           96 ARSGKCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTGN  170 (314)
Q Consensus        96 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      .. +........  ......+++.+++.++++....+.+.+++... +.+...   ........++..++++.+++....
T Consensus       100 ~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_         100 QY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             TT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             cc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccc
Confidence            64 444433321  23456788889999888887777788887643 333332   122345677788888888888888


Q ss_pred             ceEEEEeCCCCCceeeee--ecccceEEEEECCCCCEEEEeeC-CCeEEEeeCCCcEEEEEeeecc--cCeEEEEEccCC
Q 021319          171 GTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTKLE--WPVRTISFSHTG  245 (314)
Q Consensus       171 g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~sp~~  245 (314)
                      +.+.+|+... +.+.++.  +....+..|+++++|+++++-.. ++.|.+|+. +++.+.++....  .....|++.|+|
T Consensus       178 ~~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG  255 (279)
T d1q7fa_         178 HCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG  255 (279)
T ss_dssp             TEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred             cceeeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence            9999998643 3343332  23445789999999997776443 457999985 566666654321  246889999999


Q ss_pred             cEEEEecCCceEEEEECCCCC
Q 021319          246 DYIASASEDLFIDISNVHTGR  266 (314)
Q Consensus       246 ~~l~s~s~d~~v~v~~~~~~~  266 (314)
                      .+++ ++.+..|++|...+..
T Consensus       256 ~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         256 SVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEE-EETTTEEEEEECSCCC
T ss_pred             cEEE-EeCCCeEEEEEeeeec
Confidence            8665 4578999999876543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.07  E-value=1.5e-07  Score=76.21  Aligned_cols=222  Identities=9%  Similarity=0.052  Sum_probs=148.3

Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe----Ee
Q 021319           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK----PI  143 (314)
Q Consensus        68 ~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~  143 (314)
                      .+..+++.|++ +++++...+++|..||.. +..............+++.++|+++++...++.+..++.....    .+
T Consensus        29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDG-TIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCC-CEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            47789999985 688899999999999965 4544455566777889999999999998888888888764322    22


Q ss_pred             eeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee----------eecccceEEEEECCCCCEEEEeeCCC
Q 021319          144 HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV----------VAHTAGCYCIAIDPMGRYFAVGSADS  213 (314)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~~~~i~~i~~~~~~~~l~t~~~dg  213 (314)
                      .........+.+++.+++..++.....+.+..++..........          ......+..++++. +.++++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence            22223345678889999988888888888877776543211100          01112345666654 34556667778


Q ss_pred             eEEEeeCCCcEEE---EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc---CccceeEE---cC
Q 021319          214 LVSLWDISEMLCV---RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR---AAMNSVEW---NP  284 (314)
Q Consensus       214 ~i~vwd~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~---~~i~~v~~---~~  284 (314)
                      .|..++.......   ..+. .......++++++|.+.++...++.|..++.. ++........   ...++++|   +|
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~  263 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEG  263 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTT
T ss_pred             eEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCC
Confidence            8888887643221   1111 22345679999999998888889999998764 4433333221   24679999   77


Q ss_pred             CCCeeEEEec
Q 021319          285 KYNLLAYAGD  294 (314)
Q Consensus       285 ~~~~la~~~~  294 (314)
                      |++.|..++.
T Consensus       264 D~~~Lyvtt~  273 (302)
T d2p4oa1         264 DCTAIYVVTN  273 (302)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCCEEEEECC
Confidence            8887755443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.04  E-value=2.4e-07  Score=77.07  Aligned_cols=242  Identities=8%  Similarity=0.065  Sum_probs=136.6

Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe--CCCcEEEEeCC
Q 021319           20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDAR   97 (314)
Q Consensus        20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~D~~v~iwd~~   97 (314)
                      ...+..|+|+|++++|.++.. +.+..|.++...  ................+.+++++...+++..  ..++|..+...
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~--~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPT--EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETT--EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC--CeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            444667999999999888764 567888776432  1111111111122233455555432222222  12344333221


Q ss_pred             C-------------CceeeeE-----EecCceEEEEEccCCCEEEEEeC-CCcEEEEEccCCe-E--eee---eccCcce
Q 021319           98 S-------------GKCSQQA-----ELSGENINITYKPDGTHIAVGNR-DDELTILDVRKFK-P--IHR---RKFGYEV  152 (314)
Q Consensus        98 ~-------------~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~-~--~~~---~~~~~~~  152 (314)
                      .             ++.....     ......-.+.|+|+|+++++... ...|.+++..... .  ...   ...+...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            1             1111100     11123457889999998887764 4568888754321 1  111   1234567


Q ss_pred             eeEEeccCCCeEEEEc-CCceEEEEeCCCCCceeee--e-----------------ecccceEEEEECCCCCEEEEeeC-
Q 021319          153 NEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLDTV--V-----------------AHTAGCYCIAIDPMGRYFAVGSA-  211 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~--~-----------------~~~~~i~~i~~~~~~~~l~t~~~-  211 (314)
                      +.++|+|+++.+.+.. .++++.+|+....+.....  .                 .+......+.++|+|++|+++.+ 
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence            8899999999876655 5788999987554322111  0                 11223567899999999887743 


Q ss_pred             -----CCeEEEeeCCCcEEEE---Eee---ecccCeEEEEEcc-CCcEEEEe-cCCceEEEEECCC
Q 021319          212 -----DSLVSLWDISEMLCVR---TFT---KLEWPVRTISFSH-TGDYIASA-SEDLFIDISNVHT  264 (314)
Q Consensus       212 -----dg~i~vwd~~~~~~~~---~~~---~~~~~v~~~~~sp-~~~~l~s~-s~d~~v~v~~~~~  264 (314)
                           .+.|..|++.....+.   .+.   ........++++| +|++|+.+ ..++.|.+|+...
T Consensus       276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence                 2247778775432111   111   1122356799998 78987766 4678999998754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.98  E-value=3e-06  Score=67.44  Aligned_cols=230  Identities=10%  Similarity=0.130  Sum_probs=150.5

Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-------CceEEEEEccCC-CEEEEE-eCCCcEEEEEcc
Q 021319           68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-------GENINITYKPDG-THIAVG-NRDDELTILDVR  138 (314)
Q Consensus        68 ~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~l~~~-~~d~~i~i~d~~  138 (314)
                      ....++++++ ++++++-.....|++||.. +.........       .....+++.++. ..+++. +.++.+..++..
T Consensus        24 ~P~gvavd~d-g~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCC-CCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            4578899886 4677777778899999975 5555443211       122345544443 333333 334456666643


Q ss_pred             CCeEeeeec--cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee--eecccceEEEEECCCCCEEEEeeCCCe
Q 021319          139 KFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV--VAHTAGCYCIAIDPMGRYFAVGSADSL  214 (314)
Q Consensus       139 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~t~~~dg~  214 (314)
                       .+......  .......++..+++..+++....+.+.+++.. .+.+..+  ..+...+..++++++++.+++....+.
T Consensus       102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence             33333322  22345678888889988888888888877653 3333333  234456788999999999888888899


Q ss_pred             EEEeeCCCcEEEEEeee--cccCeEEEEEccCCcEEEEecC-CceEEEEECCCCCeEEEEecc---CccceeEEcCCCCe
Q 021319          215 VSLWDISEMLCVRTFTK--LEWPVRTISFSHTGDYIASASE-DLFIDISNVHTGRTVHQIPCR---AAMNSVEWNPKYNL  288 (314)
Q Consensus       215 i~vwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~s~-d~~v~v~~~~~~~~~~~~~~~---~~i~~v~~~~~~~~  288 (314)
                      |.+||.. ++.+.++..  .......|++.|+|+++++-+. +..|.+++ .+|+.+..+...   .....|+..|++.+
T Consensus       180 V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         180 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSV  257 (279)
T ss_dssp             EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             eeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence            9999964 555555532  2334678999999998877554 45789987 468877776432   25779999999976


Q ss_pred             eEEEecCCcccccccceEEecccc
Q 021319          289 LAYAGDDKNKYQADEGVFRIYGFE  312 (314)
Q Consensus       289 la~~~~d~~~~~~~~~~~~~~~~~  312 (314)
                      ++ ++.+        ..+++|-++
T Consensus       258 ~V-~~~n--------~~v~~fr~~  272 (279)
T d1q7fa_         258 VL-ASKD--------YRLYIYRYV  272 (279)
T ss_dssp             EE-EETT--------TEEEEEECS
T ss_pred             EE-EeCC--------CeEEEEEee
Confidence            55 4434        357787664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.93  E-value=6.4e-06  Score=66.84  Aligned_cols=226  Identities=9%  Similarity=0.020  Sum_probs=137.4

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC----CcEEEEeCC
Q 021319           22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KTVRLWDAR   97 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D----~~v~iwd~~   97 (314)
                      .+..++|.++|++.++-...+.|..|+.+..   ... ............+++++++ .++++...+    +.+...+..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~---~~~-~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK---EIK-RPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEE-EEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTT
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCC---eEE-EEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCC
Confidence            4578999999998887777888877776532   112 1223345567899999875 566654432    334555555


Q ss_pred             CCceeeeEEe---cCceEEEEEccCCCEEEEEeCC------CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeE-EEE
Q 021319           98 SGKCSQQAEL---SGENINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-FLT  167 (314)
Q Consensus        98 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  167 (314)
                      .+........   ......+.+.++|++.++....      +.+..++................+.++|+++++.+ ++-
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEec
Confidence            4443332221   1223457889999866654321      12444443322111111112345779999999855 555


Q ss_pred             cCCceEEEEeCCCCC-ceeee-------eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec------c
Q 021319          168 TGNGTVEVLTYPSLR-PLDTV-------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL------E  233 (314)
Q Consensus       168 ~~~g~~~~~~~~~~~-~~~~~-------~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~------~  233 (314)
                      ...+.+..|++.... .....       ......+-.++++++|++.++...++.|.+||. +++.+.++...      .
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~  274 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM  274 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcC
Confidence            677899999875322 11111       011233678999999998888888999999995 67777666422      2


Q ss_pred             cCeEEEEEccCCcEEEEecC
Q 021319          234 WPVRTISFSHTGDYIASASE  253 (314)
Q Consensus       234 ~~v~~~~~sp~~~~l~s~s~  253 (314)
                      ..+.+++|.|+...+++.+.
T Consensus       275 ~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         275 LRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CBCCEEEECTTSCEEEEEEE
T ss_pred             ceeeeEEEeCCCCEEEEEcC
Confidence            24678999998876665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.66  E-value=4.9e-05  Score=60.70  Aligned_cols=218  Identities=12%  Similarity=0.066  Sum_probs=141.5

Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec--c
Q 021319           71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--F  148 (314)
Q Consensus        71 ~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~  148 (314)
                      ...|++.++.+..+=-..+.|..||..+++. ....+.....++++.+++.++++. . ..+..+|..+.+...-..  .
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~-~-~gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSST
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEE-e-CccEEeecccceeeEEeeeec
Confidence            4567776655655555678899999988764 344555667778888888777654 4 468899988765432211  1


Q ss_pred             ---CcceeeEEeccCCCeEEEEcC----CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-EeeCCCeEEEeeC
Q 021319          149 ---GYEVNEIAWNMTGEMFFLTTG----NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDI  220 (314)
Q Consensus       149 ---~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~  220 (314)
                         ....+.+...++|...+....    .+.-.+|.....+ +..+...-...+.++++++++.+. +-+..+.|..|++
T Consensus        99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc-EEEEeeccCCcceeeecCCCceEEEeecccceeeEeee
Confidence               235678888899987776532    1233444443332 222222334468899999998655 4455678988886


Q ss_pred             CC--c------EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc-CccceeEEc-CCCCee-
Q 021319          221 SE--M------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWN-PKYNLL-  289 (314)
Q Consensus       221 ~~--~------~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~-~~i~~v~~~-~~~~~l-  289 (314)
                      ..  .      .....+.........+++..+|.+.++.-..+.|..+|. .|+.+..+..- ..+++++|- |+.+.| 
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         178 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             cccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEE
Confidence            42  1      111122233445778999999998887777788999995 68888887653 468999996 676555 


Q ss_pred             EEEe
Q 021319          290 AYAG  293 (314)
Q Consensus       290 a~~~  293 (314)
                      +|+.
T Consensus       257 vTta  260 (295)
T d2ghsa1         257 VTSA  260 (295)
T ss_dssp             EEEB
T ss_pred             EEEC
Confidence            5444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.4e-05  Score=68.26  Aligned_cols=269  Identities=12%  Similarity=0.080  Sum_probs=141.8

Q ss_pred             cEEEEEECCCCCEEEEe---------eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319           22 KVHSVAWNCTGTKLASG---------SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR   92 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~---------~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~   92 (314)
                      .+....||||+++++-.         +..+.+.++|+.++....+  .........+....|+|++..+.. . .++.|.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l--~~~~~~~~~l~~~~wSPDG~~iaf-v-~~~nl~  137 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL--DPPEVSNAKLQYAGWGPKGQQLIF-I-FENNIY  137 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC--CCTTCCSCCCSBCCBCSSTTCEEE-E-ETTEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeec--cCccCCccccceeeeccCCceEEE-E-ecceEE
Confidence            56778899999987765         3356777888875432111  011122334556789999765443 3 356777


Q ss_pred             EEeCCCCceeeeEEec-------------------CceEEEEEccCCCEEEEEeCCC-cEEEEEc---------------
Q 021319           93 LWDARSGKCSQQAELS-------------------GENINITYKPDGTHIAVGNRDD-ELTILDV---------------  137 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~---------------  137 (314)
                      +.+...+...+.....                   .....+.|+|||+.|+....|. .+..+.+               
T Consensus       138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~  217 (465)
T d1xfda1         138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH  217 (465)
T ss_dssp             EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred             EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee
Confidence            7777665543332111                   1124577999999999875433 2333322               


Q ss_pred             ------------------cCCeEeeeecc-------CcceeeEEeccCCCeEEEEcC----CceEEEEeCCCCCceeeee
Q 021319          138 ------------------RKFKPIHRRKF-------GYEVNEIAWNMTGEMFFLTTG----NGTVEVLTYPSLRPLDTVV  188 (314)
Q Consensus       138 ------------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~  188 (314)
                                        ...........       ..-+..+.|+++++.++....    ...+.+++..+.+......
T Consensus       218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence                              11110000000       011345778888775555432    1245556665554332222


Q ss_pred             ec-ccc----eEEEEECCCCCEEE---EeeCCC--eEEEeeC------CCcEEEEEeeecccCeEEE-EEccCCcEE-EE
Q 021319          189 AH-TAG----CYCIAIDPMGRYFA---VGSADS--LVSLWDI------SEMLCVRTFTKLEWPVRTI-SFSHTGDYI-AS  250 (314)
Q Consensus       189 ~~-~~~----i~~i~~~~~~~~l~---t~~~dg--~i~vwd~------~~~~~~~~~~~~~~~v~~~-~~sp~~~~l-~s  250 (314)
                      .+ ...    -....|+++|+.++   ....+|  .+...++      ..+..+..+...++.|..+ +|+++++.| ++
T Consensus       298 e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~  377 (465)
T d1xfda1         298 DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL  377 (465)
T ss_dssp             EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred             EcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEE
Confidence            11 111    13457889987432   222333  2332222      1233334455667788775 688887655 45


Q ss_pred             ecCC--ceEEEEECC--CCCeEEEEe----ccCccceeEEcCCCCeeEEEec
Q 021319          251 ASED--LFIDISNVH--TGRTVHQIP----CRAAMNSVEWNPKYNLLAYAGD  294 (314)
Q Consensus       251 ~s~d--~~v~v~~~~--~~~~~~~~~----~~~~i~~v~~~~~~~~la~~~~  294 (314)
                      |..+  +.-++|.+.  .+.....+.    ..+...++.|||++++++....
T Consensus       378 a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         378 STEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             ESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             EeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence            6554  233555543  222222222    1335679999999999875544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.6e-05  Score=67.90  Aligned_cols=216  Identities=11%  Similarity=0.138  Sum_probs=124.8

Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe---c-CceEEEEEccCCCEEEEEeC---------CCcEEEEEccC
Q 021319           73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL---S-GENINITYKPDGTHIAVGNR---------DDELTILDVRK  139 (314)
Q Consensus        73 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~  139 (314)
                      .|.+++ .++. -..||.+.+||..+++.......   . .......++||+++++....         .+.+.++|+.+
T Consensus        23 ~W~~~~-~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          23 KWISDT-EFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CBSSSS-CBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EEeCCC-cEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            576653 4443 35678899999887764332221   1 13345779999999887643         45688899876


Q ss_pred             CeEeee--ec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee-eccc-----------------ceEEEE
Q 021319          140 FKPIHR--RK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTA-----------------GCYCIA  198 (314)
Q Consensus       140 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~-----------------~i~~i~  198 (314)
                      .....-  .. ....+....|+|+|+.++... ++.+.+.+.......+... +...                 .-..+-
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            653322  11 122345678999999987765 4567777665443332221 1111                 124677


Q ss_pred             ECCCCCEEEEeeCC-CeEEEee---------------------------------CCCcEEEEEee------ecccCeEE
Q 021319          199 IDPMGRYFAVGSAD-SLVSLWD---------------------------------ISEMLCVRTFT------KLEWPVRT  238 (314)
Q Consensus       199 ~~~~~~~l~t~~~d-g~i~vwd---------------------------------~~~~~~~~~~~------~~~~~v~~  238 (314)
                      |||||++||....| ..|..+.                                 +..........      ..+.-+..
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            99999999876433 2333332                                 22111100000      00112567


Q ss_pred             EEEccCCcEEEEecC----CceEEEEECCCCCeEEEEec--cCc----cceeEEcCCCCeeEE
Q 021319          239 ISFSHTGDYIASASE----DLFIDISNVHTGRTVHQIPC--RAA----MNSVEWNPKYNLLAY  291 (314)
Q Consensus       239 ~~~sp~~~~l~s~s~----d~~v~v~~~~~~~~~~~~~~--~~~----i~~v~~~~~~~~la~  291 (314)
                      +.|+|++++++....    ...+.++|..+|+....+..  .+-    -....|+|++..++.
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~f  322 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF  322 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEE
Confidence            889999987765422    24688899998876544332  221    235689999986543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.40  E-value=4.4e-05  Score=59.92  Aligned_cols=226  Identities=11%  Similarity=0.048  Sum_probs=110.8

Q ss_pred             ECCC--CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCCCc
Q 021319           28 WNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-----TVRLWDARSGK  100 (314)
Q Consensus        28 ~s~~--g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~-----~v~iwd~~~~~  100 (314)
                      .|||  |+.++=.+ ++.|.+.+++..   ..  ..+..+...+...+|+|++..+..+...++     .|.+.+..++.
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g---~~--~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSG---ST--RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTC---CE--EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCC---CE--EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            4688  88877554 344555566532   22  245667778889999998754444433222     36666777776


Q ss_pred             eeeeEEec-------CceEEEEEccCCCEEEEEeCCC------cEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319          101 CSQQAELS-------GENINITYKPDGTHIAVGNRDD------ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus       101 ~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      ..+.....       .......|+|+++.++......      .+...+...........  .... -.+.+++...+..
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~  156 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL--GPAT-HILFADGRRVIGR  156 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS--CSCS-EEEEETTEEEEEE
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC--Cccc-eeeecCCCeEEEe
Confidence            54322111       1223577999999988764422      23444444433322111  1111 1223333332222


Q ss_pred             cCCce------------EEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC--eEEEeeCCCcEEEEEeeec-
Q 021319          168 TGNGT------------VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS--LVSLWDISEMLCVRTFTKL-  232 (314)
Q Consensus       168 ~~~g~------------~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~-  232 (314)
                      .....            ........ .................++++. .+.....++  .|.++|+..... +.+... 
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~-~~lt~~~  233 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDL-RKHTSFT  233 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSC-EECCCCC
T ss_pred             eccccceeeeeccCCcceeeeeccc-cceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCce-EEeecCC
Confidence            11100            00000000 0011111122223334444443 223333333  466777765433 233322 


Q ss_pred             ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeE
Q 021319          233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV  268 (314)
Q Consensus       233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~  268 (314)
                      ...+  ..|+|||+.|+- +.++.++++|+.+++..
T Consensus       234 ~~~~--~~~SpDG~~I~f-~~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         234 DYYP--RHLNTDGRRILF-SKGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             SSCE--EEEEESSSCEEE-EETTEEEEECTTTCCEE
T ss_pred             Cccc--ccCcCCCCEEEE-EeCCEEEEEECCCCCEE
Confidence            2233  468999998875 34677999998877644

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.30  E-value=8.5e-05  Score=58.18  Aligned_cols=94  Identities=17%  Similarity=0.197  Sum_probs=57.7

Q ss_pred             EcCC--CCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CC-----cEEEEEccCCeEeee
Q 021319           74 WDPK--HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD-----ELTILDVRKFKPIHR  145 (314)
Q Consensus        74 ~~~~--~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~-----~i~i~d~~~~~~~~~  145 (314)
                      .+|+  +..++.+ + ++.|.+.|+..++..+.....+......|+|||+.|+.... ++     .+.+++....+...-
T Consensus         6 ~sPdi~G~~v~f~-~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFV-C-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEE-E-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEE-e-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            3455  5444333 3 34577779988876554444455667899999999985532 22     366667666654332


Q ss_pred             ecc-------CcceeeEEeccCCCeEEEEcC
Q 021319          146 RKF-------GYEVNEIAWNMTGEMFFLTTG  169 (314)
Q Consensus       146 ~~~-------~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      ...       ........|+|+++.++....
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEc
Confidence            111       123456789999998877643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.20  E-value=0.00076  Score=53.51  Aligned_cols=216  Identities=13%  Similarity=0.049  Sum_probs=133.7

Q ss_pred             EEEEECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319           24 HSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS  102 (314)
Q Consensus        24 ~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~  102 (314)
                      ....|.+.... ..+=-..+.|.-||.+..   ......   ....+.++++.+++ .+++ ++.+ .+.++|..+++..
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g---~~~~~~---~~~~~~~i~~~~dg-~l~v-a~~~-gl~~~d~~tg~~~   91 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASG---RKTVHA---LPFMGSALAKISDS-KQLI-ASDD-GLFLRDTATGVLT   91 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTT---EEEEEE---CSSCEEEEEEEETT-EEEE-EETT-EEEEEETTTCCEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCC---eEEEEE---CCCCcEEEEEecCC-CEEE-EEeC-ccEEeecccceee
Confidence            45667775444 444335678888887642   222222   34567788887663 4554 4444 6889999988765


Q ss_pred             eeEEecC-----ceEEEEEccCCCEEEEEeC----CCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE-cCCce
Q 021319          103 QQAELSG-----ENINITYKPDGTHIAVGNR----DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT-TGNGT  172 (314)
Q Consensus       103 ~~~~~~~-----~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~  172 (314)
                      .......     ....+.+.|+|++.+....    .+.-.+|.+...+.......-...+.++|+++++.++.+ +..+.
T Consensus        92 ~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~  171 (295)
T d2ghsa1          92 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  171 (295)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccce
Confidence            4433221     2345778899987665442    224456665555433222222345778999999865544 56788


Q ss_pred             EEEEeCCCCCc-----eee---eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc-c
Q 021319          173 VEVLTYPSLRP-----LDT---VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS-H  243 (314)
Q Consensus       173 ~~~~~~~~~~~-----~~~---~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-p  243 (314)
                      +..+++.....     ...   .....+.+..++++.+|.+.++.-..+.|..||. +++.+..+.-....+++++|- |
T Consensus       172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~  250 (295)
T d2ghsa1         172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP  250 (295)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred             eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCC
Confidence            88887643211     111   1123445788999999998887777889999995 577777776554568999995 6


Q ss_pred             CCcEEE
Q 021319          244 TGDYIA  249 (314)
Q Consensus       244 ~~~~l~  249 (314)
                      +.+.|+
T Consensus       251 d~~~Ly  256 (295)
T d2ghsa1         251 DASRLL  256 (295)
T ss_dssp             TSCEEE
T ss_pred             CCCEEE
Confidence            655443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=0.0033  Score=48.72  Aligned_cols=220  Identities=8%  Similarity=-0.006  Sum_probs=133.2

Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEE-EEeCCCcEEEEEccCCe
Q 021319           64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIA-VGNRDDELTILDVRKFK  141 (314)
Q Consensus        64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~  141 (314)
                      .+...+..+++++..+.+..+-..++.|+..++..+......... ..+..+++..-+..|. +-...+.|.+.++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            344457788998876556666667788988888765443332221 3456788876666665 44556788888876543


Q ss_pred             Eeeeecc-CcceeeEEeccCCCeEEEEcCC---ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEe-eCCCeEE
Q 021319          142 PIHRRKF-GYEVNEIAWNMTGEMFFLTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG-SADSLVS  216 (314)
Q Consensus       142 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~  216 (314)
                      ...-... ...+..++..|....++.....   ..+...++............-..+..+++++.++.|.-+ ...+.|.
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            2111111 2456788888877766655432   235444554433222222223467899999877766544 4567899


Q ss_pred             EeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec--cCccceeEEcCC
Q 021319          217 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPK  285 (314)
Q Consensus       217 vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~--~~~i~~v~~~~~  285 (314)
                      ..|+....+...+.+...| ..|++. ++.+..|-...+.|...|..+++.+..+..  ......++..++
T Consensus       193 ~~~~~g~~~~~v~~~~~~P-~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         193 CLNPAQPGRRKVLEGLQYP-FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EEETTEEEEEEEEECCCSE-EEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             EEECCCCCeEEEECCCCCc-EEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            9998765544444444433 467764 344445555678899999998888776532  234556666554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.83  E-value=0.00081  Score=55.25  Aligned_cols=219  Identities=16%  Similarity=0.139  Sum_probs=135.9

Q ss_pred             CCCCEEEEee-CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-CCCEEEEEeCC------------------C
Q 021319           30 CTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGD------------------K   89 (314)
Q Consensus        30 ~~g~~l~s~~-~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~D------------------~   89 (314)
                      +||++|.... .+..|-+-|++......+  .+++ ....+..+...+. ...+++.++.+                  +
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kI--i~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAI--LEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEE--EECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEE--EecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            4788866665 688888888876432111  2232 2334555554332 23566665553                  2


Q ss_pred             cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC--------------------------------------c
Q 021319           90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD--------------------------------------E  131 (314)
Q Consensus        90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--------------------------------------~  131 (314)
                      .+..+|..+.+...+....+..-.+.++++|+++++.+.+.                                      .
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            35678999888888888877777899999999999876432                                      1


Q ss_pred             EEEEEccCC---eEeeeeccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCCCC--------ceeeee---ecccceEE
Q 021319          132 LTILDVRKF---KPIHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLR--------PLDTVV---AHTAGCYC  196 (314)
Q Consensus       132 i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~--------~~~~~~---~~~~~i~~  196 (314)
                      +.+.|.+..   ..+..+..+.....+..+|+|+++++++ -+.++.++++....        +...+.   ....+...
T Consensus       254 V~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh  333 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  333 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred             ceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence            233333221   1111222334566788999999988876 57899999975321        111111   23445788


Q ss_pred             EEECCCCCEEEEeeCCCeEEEeeCCCc----------EEEEEeeecccCeEEE------EEccCCcEEEEec
Q 021319          197 IAIDPMGRYFAVGSADSLVSLWDISEM----------LCVRTFTKLEWPVRTI------SFSHTGDYIASAS  252 (314)
Q Consensus       197 i~~~~~~~~l~t~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~------~~sp~~~~l~s~s  252 (314)
                      .+|+..|....+---|.+|.-|++...          ..+..+..| ..+-.+      ...|+|++|++..
T Consensus       334 t~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~-y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         334 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             cccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccc-cCCCCCccCcCCcCCCCCCEEEEec
Confidence            899998876667778999999998432          334444222 222223      2368999999884

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.64  E-value=0.01  Score=48.25  Aligned_cols=283  Identities=10%  Similarity=0.008  Sum_probs=141.4

Q ss_pred             EEEECCCCCEEEEeeCCC-----------cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC-CcEE
Q 021319           25 SVAWNCTGTKLASGSVDQ-----------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-KTVR   92 (314)
Q Consensus        25 ~v~~s~~g~~l~s~~~D~-----------~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D-~~v~   92 (314)
                      ......+|+.++-|+.+.           .+.+||..+.......... ..|.......++.+++ .+++.|+.+ ..+.
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGNG-QIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC-CCcccceeEEEEecCC-cEEEeecCCCccee
Confidence            333456888888887532           3678998765433322222 2233333345666664 677777654 6899


Q ss_pred             EEeCCCCceeeeEEecC--ceEEEEEccCCCEEEEEeCC------CcEEEEEccCCeEeeeecc--Ccc-----------
Q 021319           93 LWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKF--GYE-----------  151 (314)
Q Consensus        93 iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~--~~~-----------  151 (314)
                      +||..+...........  ..-.++..+|++.++.|+.+      ..+.+||+.+.+....-..  ...           
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~  181 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  181 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeec
Confidence            99998776544322211  12346667899999988753      3588999887654221100  000           


Q ss_pred             --eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceee--eee----cc---cceEEEEECCCCCEEEEeeCCC-------
Q 021319          152 --VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT--VVA----HT---AGCYCIAIDPMGRYFAVGSADS-------  213 (314)
Q Consensus       152 --~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~----~~---~~i~~i~~~~~~~~l~t~~~dg-------  213 (314)
                        ...+.-.+++..+..+...+.+..++.........  ...    +.   ..-..+....++++++.|+...       
T Consensus       182 ~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~  261 (387)
T d1k3ia3         182 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  261 (387)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             cceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCccc
Confidence              00111223445555555555555555433221110  000    00   0111222234677777776432       


Q ss_pred             -eEEEeeCC---CcE-EEEEeee--cccCeEEEEEccCCcEEEEecCC-----------ceEEEEECCCCCeEEEEec--
Q 021319          214 -LVSLWDIS---EML-CVRTFTK--LEWPVRTISFSHTGDYIASASED-----------LFIDISNVHTGRTVHQIPC--  273 (314)
Q Consensus       214 -~i~vwd~~---~~~-~~~~~~~--~~~~v~~~~~sp~~~~l~s~s~d-----------~~v~v~~~~~~~~~~~~~~--  273 (314)
                       ...+.++.   ... .......  ....-.+....|++++++.|+.+           ..+.+||..+.+= ..+..  
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W-~~~~~~~  340 (387)
T d1k3ia3         262 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-YKQNPNS  340 (387)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-EECCCCS
T ss_pred             ceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeE-EECCCCC
Confidence             12222221   111 1111111  11112234456899999998853           1467888876531 11111  


Q ss_pred             cCcc--ceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319          274 RAAM--NSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG  310 (314)
Q Consensus       274 ~~~i--~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~  310 (314)
                      ..+.  ......||+++|+.||..........-.+.||+
T Consensus       341 ~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~  379 (387)
T d1k3ia3         341 IVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFT  379 (387)
T ss_dssp             SCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEE
T ss_pred             CcccceEEEEECCCCEEEEEeCCCcCCCCcccceEEEEc
Confidence            1111  134467999999999964433333333456654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.60  E-value=0.018  Score=49.89  Aligned_cols=75  Identities=9%  Similarity=0.039  Sum_probs=49.1

Q ss_pred             CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccce--eEEcCCCCe
Q 021319          213 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYNL  288 (314)
Q Consensus       213 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~--v~~~~~~~~  288 (314)
                      |.+.-+|+.+++.+-+..... +..+=..+-.+.+++.|+.|+.++.+|..+|+.+.++.....+.+  +.|..+|+.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            457777777777664433211 111111222466777899999999999999999999876555544  566667754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.55  E-value=0.0053  Score=50.33  Aligned_cols=184  Identities=14%  Similarity=0.119  Sum_probs=116.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEec--CceEEEEE--ccCCCEEEEEeCCC------------------cEEEEEc
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAELS--GENINITY--KPDGTHIAVGNRDD------------------ELTILDV  137 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~--~~~~~~l~~~~~d~------------------~i~i~d~  137 (314)
                      .+++.-..+.+|-+.|++..++.+..+..  ...-.++.  .|...+++..+...                  .+.++|.
T Consensus       101 ylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~  180 (459)
T d1fwxa2         101 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA  180 (459)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEET
T ss_pred             EEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEec
Confidence            34556667899999999998887755442  22222343  45667777766632                  3677898


Q ss_pred             cCCeEeeeeccCcceeeEEeccCCCeEEEEcCCc---------------eEEEE-----------------------eCC
Q 021319          138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG---------------TVEVL-----------------------TYP  179 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------------~~~~~-----------------------~~~  179 (314)
                      .+.+.......+.....+.++++|+.+++.+.+.               .+.++                       +..
T Consensus       181 ~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~  260 (459)
T d1fwxa2         181 DKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGR  260 (459)
T ss_dssp             TTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECS
T ss_pred             CCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeeccc
Confidence            8888877777777788899999999988876431               12222                       211


Q ss_pred             C--CCceeeeeecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcEEE-----------EEeeecccCeEEEEEccCC
Q 021319          180 S--LRPLDTVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCV-----------RTFTKLEWPVRTISFSHTG  245 (314)
Q Consensus       180 ~--~~~~~~~~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~sp~~  245 (314)
                      .  ......+..-...+..+.++|||++++++ ..+.++.++|+++...+           ..-..........+|+..|
T Consensus       261 ~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g  340 (459)
T d1fwxa2         261 KEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG  340 (459)
T ss_dssp             GG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS
T ss_pred             ccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc
Confidence            1  00111111223345678999999997655 45789999999653211           0111122335667898888


Q ss_pred             cEEEEecCCceEEEEECC
Q 021319          246 DYIASASEDLFIDISNVH  263 (314)
Q Consensus       246 ~~l~s~s~d~~v~v~~~~  263 (314)
                      ....|-=-|..|--|++.
T Consensus       341 ~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         341 NAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEEEEETTTTEEEEEEHH
T ss_pred             eEEEEeeccceEEEEecc
Confidence            655555689999999974

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.99  E-value=0.061  Score=43.41  Aligned_cols=225  Identities=8%  Similarity=0.044  Sum_probs=111.4

Q ss_pred             EEEEECCCCCEEEEeeCC-CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC------CcEEEEeC
Q 021319           24 HSVAWNCTGTKLASGSVD-QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------KTVRLWDA   96 (314)
Q Consensus        24 ~~v~~s~~g~~l~s~~~D-~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D------~~v~iwd~   96 (314)
                      ...++.++|..++.|+.+ ..+.+||..+.......  ... ....-..++..++ +.+++.|+.+      ..+.+||.
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~--~~~-~~r~~~~~~~~~d-G~v~v~GG~~~~~~~~~~v~~yd~  154 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP--DMQ-VARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSP  154 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC--CCS-SCCSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEET
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccc--ccc-ccccccceeeecC-CceeeeccccccccccceeeeecC
Confidence            355678999999998765 68999998753221111  111 1111223444555 4577777653      46889998


Q ss_pred             CCCceeeeEEec---------------CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--C-------cce
Q 021319           97 RSGKCSQQAELS---------------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--G-------YEV  152 (314)
Q Consensus        97 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~-------~~~  152 (314)
                      .+..........               .....+...++++.++.+.....+..+|..+.........  .       ...
T Consensus       155 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (387)
T d1k3ia3         155 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG  234 (387)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred             CCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccc
Confidence            877543211100               0111123345677777776666777777766543321110  0       001


Q ss_pred             eeEEe-ccCCCeEEEEcCC--------ceEEEEeCCCCCce-eeee-----ecccceEEEEECCCCCEEEEeeCCC----
Q 021319          153 NEIAW-NMTGEMFFLTTGN--------GTVEVLTYPSLRPL-DTVV-----AHTAGCYCIAIDPMGRYFAVGSADS----  213 (314)
Q Consensus       153 ~~~~~-~~~~~~~~~~~~~--------g~~~~~~~~~~~~~-~~~~-----~~~~~i~~i~~~~~~~~l~t~~~dg----  213 (314)
                      ..+.. ..+++.+++++..        ......+....... ....     .+...-.+....+++++++.|+.+.    
T Consensus       235 ~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~  314 (387)
T d1k3ia3         235 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  314 (387)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             cEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccC
Confidence            11222 2244555555421        12222222111100 0000     0111123455668999999988542    


Q ss_pred             -------eEEEeeCCCcEEEEEeeecccC---eEEEEEccCCcEEEEecC
Q 021319          214 -------LVSLWDISEMLCVRTFTKLEWP---VRTISFSHTGDYIASASE  253 (314)
Q Consensus       214 -------~i~vwd~~~~~~~~~~~~~~~~---v~~~~~sp~~~~l~s~s~  253 (314)
                             .+.+||..+.+-. .+.....+   =......|||++++.|+.
T Consensus       315 ~~~~~~~~ve~Ydp~~~~W~-~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         315 EDSTPVFTPEIYVPEQDTFY-KQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCCSBCCCCEEEEGGGTEEE-ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCcEeceEEEEECCCCeEE-ECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence                   4778998766432 22111111   122345789999988874

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.58  E-value=0.19  Score=43.20  Aligned_cols=98  Identities=10%  Similarity=0.126  Sum_probs=60.4

Q ss_pred             CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccce--eEEcCCCC-ee
Q 021319          213 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYN-LL  289 (314)
Q Consensus       213 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~--v~~~~~~~-~l  289 (314)
                      |.+.-||+.+++.+-+++... +...=..+-.+.+|++|+.|+.++.+|..+|+.+.++.....+.+  +.|..+|+ ++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            356777777777765543221 111112234677888899999999999999999999886555443  45555775 33


Q ss_pred             EEEecCC--------cccccccceEEeccc
Q 021319          290 AYAGDDK--------NKYQADEGVFRIYGF  311 (314)
Q Consensus       290 a~~~~d~--------~~~~~~~~~~~~~~~  311 (314)
                      +..+.-+        .......|.+-+|.|
T Consensus       536 ~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l  565 (573)
T d1kb0a2         536 SVAVGWGGVYGLAARATERQGPGTVYTFVV  565 (573)
T ss_dssp             EEEECCCHHHHHHCCSCSCCCCCEEEEEEE
T ss_pred             EEEeCCCcccccccccccCCCCCEEEEEEe
Confidence            3333221        223344566666655

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.45  E-value=0.22  Score=42.57  Aligned_cols=80  Identities=9%  Similarity=0.108  Sum_probs=53.4

Q ss_pred             CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccce--eEEcCCCC-ee
Q 021319          213 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYN-LL  289 (314)
Q Consensus       213 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~--v~~~~~~~-~l  289 (314)
                      |.+.-||+.+++.+-++... .+...=..+-.+.+++.|+.|+.++.+|..+|+.+.++.....+.+  +.+..+|+ ++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            56888899998877654322 2222112334567888899999999999999999999876554443  34555674 44


Q ss_pred             EEEe
Q 021319          290 AYAG  293 (314)
Q Consensus       290 a~~~  293 (314)
                      +...
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.19  Score=38.35  Aligned_cols=210  Identities=10%  Similarity=-0.010  Sum_probs=118.6

Q ss_pred             ccccEEEEEECCCCCEEEEee-CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319           19 HKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR   97 (314)
Q Consensus        19 H~~~V~~v~~s~~g~~l~s~~-~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~   97 (314)
                      ....+..++|.+..+.|.=.. .++.|+--+++...........+......+..+++.+.++++..+-...++|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            344667888988777665544 4555655555321111111112223334567788877666677777778899999987


Q ss_pred             CCceeeeEEe-cCceEEEEEccCCCEEEEEeCC--CcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEE-cCCce
Q 021319           98 SGKCSQQAEL-SGENINITYKPDGTHIAVGNRD--DELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLT-TGNGT  172 (314)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~g~  172 (314)
                      .......... ...+..+++.|...+|......  +.|.-.++.......-. ..-.....++..+.++.+..+ ...+.
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCE
Confidence            6654443332 2456778888876666655433  34555555433222211 112345778888777655554 56788


Q ss_pred             EEEEeCCCCCceeeeee--cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319          173 VEVLTYPSLRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF  229 (314)
Q Consensus       173 ~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~  229 (314)
                      +...++...........  ....+..+++. .+.+..+-..++.|...+..++...+.+
T Consensus       188 I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence            88888765433222222  22346677776 3344444446677777777666544433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.09  E-value=0.37  Score=41.52  Aligned_cols=218  Identities=17%  Similarity=0.082  Sum_probs=121.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEecCce--EEEEEcc--CCCEEEEEeC------CCcEEEEEccCCeEeeeeccC
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAELSGEN--INITYKP--DGTHIAVGNR------DDELTILDVRKFKPIHRRKFG  149 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~  149 (314)
                      .+|+.++.|+.|.-.|..+|+...........  ..+.-.|  .+..++++..      .|.|.-+|+++.+.+.+....
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            46788999999999999999876654322110  0011001  1334555543      478999999998887653321


Q ss_pred             c--------------------------------------c-eeeEEeccCCCeEEEEcCC----------------ceEE
Q 021319          150 Y--------------------------------------E-VNEIAWNMTGEMFFLTTGN----------------GTVE  174 (314)
Q Consensus       150 ~--------------------------------------~-~~~~~~~~~~~~~~~~~~~----------------g~~~  174 (314)
                      .                                      . -...++.+....++.+..+                ..+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence            0                                      0 0112334444445444332                3355


Q ss_pred             EEeCCCCCceeeeee--cc-------cceEEEE-ECCCC---CEEEEeeCCCeEEEeeCCCcEEEEEeeecc--------
Q 021319          175 VLTYPSLRPLDTVVA--HT-------AGCYCIA-IDPMG---RYFAVGSADSLVSLWDISEMLCVRTFTKLE--------  233 (314)
Q Consensus       175 ~~~~~~~~~~~~~~~--~~-------~~i~~i~-~~~~~---~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--------  233 (314)
                      ..+..+.+..-.++.  |.       ..+..+. ...+|   +.++....+|.+.++|..+++.+...+...        
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~  361 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV  361 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccc
Confidence            566666554433321  11       1122222 23344   367888999999999999887764321100        


Q ss_pred             -----cC--------------------------eEEEEEccCCcEEEEecC-----------------------------
Q 021319          234 -----WP--------------------------VRTISFSHTGDYIASASE-----------------------------  253 (314)
Q Consensus       234 -----~~--------------------------v~~~~~sp~~~~l~s~s~-----------------------------  253 (314)
                           .+                          -...+++|+..++.....                             
T Consensus       362 d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  441 (596)
T d1w6sa_         362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG  441 (596)
T ss_dssp             CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccC
Confidence                 00                          012356666554443211                             


Q ss_pred             ----------CceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319          254 ----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       254 ----------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                                -|.+.-||..+|+.+.+.....+..+=..+..+.++..|+.|+.
T Consensus       442 ~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~  495 (596)
T d1w6sa_         442 PKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGY  495 (596)
T ss_dssp             TTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSE
T ss_pred             cccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCe
Confidence                      15788899999999888776655554444455677767776654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.02  E-value=0.38  Score=41.06  Aligned_cols=218  Identities=12%  Similarity=0.072  Sum_probs=119.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEecCceE--EEEEcc--CCCEEEEEeC------CCcEEEEEccCCeEeeeeccC
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAELSGENI--NITYKP--DGTHIAVGNR------DDELTILDVRKFKPIHRRKFG  149 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~  149 (314)
                      ..++.+..|+.+.-.|..+|+..-.........  .+...|  ....++++..      .+.|.-+|.++.+.+.+....
T Consensus       118 ~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  197 (560)
T d1kv9a2         118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV  197 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             CeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeec
Confidence            457778889999999998988765544322111  110000  1223333332      356889999988877654321


Q ss_pred             c-------------------------------ce-eeEEeccCCCeEEEEcC-------------------CceEEEEeC
Q 021319          150 Y-------------------------------EV-NEIAWNMTGEMFFLTTG-------------------NGTVEVLTY  178 (314)
Q Consensus       150 ~-------------------------------~~-~~~~~~~~~~~~~~~~~-------------------~g~~~~~~~  178 (314)
                      .                               .+ ....+.+....++.+..                   ...+..++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~  277 (560)
T d1kv9a2         198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP  277 (560)
T ss_dssp             CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred             cccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecC
Confidence            0                               00 11233444444444332                   133445555


Q ss_pred             CCCCceeeeeeccc---------ceEEEEECCCC---CEEEEeeCCCeEEEeeCCCcEEEEEeeeccc------------
Q 021319          179 PSLRPLDTVVAHTA---------GCYCIAIDPMG---RYFAVGSADSLVSLWDISEMLCVRTFTKLEW------------  234 (314)
Q Consensus       179 ~~~~~~~~~~~~~~---------~i~~i~~~~~~---~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~------------  234 (314)
                      .+.+..-.++....         ...-..+..++   ..++.++.+|.+.++|..+++.+........            
T Consensus       278 ~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~  357 (560)
T d1kv9a2         278 DTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGR  357 (560)
T ss_dssp             TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCC
T ss_pred             CccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhcc
Confidence            55543332221111         11112222233   3677899999999999998887643321100            


Q ss_pred             ------------------------CeEEEEEccCCcEEEEecC------------------------------------C
Q 021319          235 ------------------------PVRTISFSHTGDYIASASE------------------------------------D  254 (314)
Q Consensus       235 ------------------------~v~~~~~sp~~~~l~s~s~------------------------------------d  254 (314)
                                              .-...+++|+..+++..+.                                    .
T Consensus       358 ~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  437 (560)
T d1kv9a2         358 PVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVS  437 (560)
T ss_dssp             EEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCE
T ss_pred             ccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccc
Confidence                                    0113466777666554332                                    2


Q ss_pred             ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319          255 LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       255 ~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      |.+.-+|..+|+.+.+.+...+..+-...-.+.++..++.|+.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~  480 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQ  480 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCc
Confidence            5788999999999998887665554444445666666666643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.22  Score=37.92  Aligned_cols=209  Identities=9%  Similarity=0.003  Sum_probs=125.1

Q ss_pred             eecccccEEEEEECCCCCEEEEe-eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319           16 YTGHKKKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW   94 (314)
Q Consensus        16 ~~gH~~~V~~v~~s~~g~~l~s~-~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw   94 (314)
                      +..+...+..|+|.+..+.|.-. ..++.|+..+++...   ... .+..-...+..++++..++++..+-...+.|.+.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~---~~~-v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~  106 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PTT-IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEE-EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC---cEE-EEEeccccccEEEEeccCCeEEEeccCCCEEEEE
Confidence            34445567889998887766555 456777777765322   111 1222335678888887655565676778899999


Q ss_pred             eCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCC-Cc--EEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEE-c
Q 021319           95 DARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRD-DE--LTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLT-T  168 (314)
Q Consensus        95 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~  168 (314)
                      ++....+...... -..+..+++.|...+++..... +.  |...++.......-. ..-.....++..+..+.+..+ .
T Consensus       107 ~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         107 KMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             ecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC
Confidence            9876654332222 2356678888887777755433 22  444444332221111 111345678887776655544 5


Q ss_pred             CCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319          169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT  230 (314)
Q Consensus       169 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~  230 (314)
                      ..+.+...++........+.+ ...+..+++. ++.+..+-...+.|...|..+++.+..+.
T Consensus       187 ~~~~I~~~~~~g~~~~~v~~~-~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         187 GTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEECCCCCeEEEECC-CCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            678888888765433222222 2335678876 34444555566889999998888776653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.95  E-value=0.41  Score=40.94  Aligned_cols=220  Identities=11%  Similarity=0.012  Sum_probs=121.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeEEecCce--EEEE---EccCCCEEEEEeC------CCcEEEEEccCCeEeeeecc
Q 021319           80 DLIATASGDKTVRLWDARSGKCSQQAELSGEN--INIT---YKPDGTHIAVGNR------DDELTILDVRKFKPIHRRKF  148 (314)
Q Consensus        80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~  148 (314)
                      ..++.++.|+.+.--|..+|+...........  ..+.   .-.+ ..++++..      .+.|.-+|+++.+.+.+...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            35677889999999999999876554332110  0000   0112 34444442      67799999999887765332


Q ss_pred             Cc--------------------------------------ce-eeEEeccCCCeEEEEcC----------------CceE
Q 021319          149 GY--------------------------------------EV-NEIAWNMTGEMFFLTTG----------------NGTV  173 (314)
Q Consensus       149 ~~--------------------------------------~~-~~~~~~~~~~~~~~~~~----------------~g~~  173 (314)
                      ..                                      .+ ...++.+....++++..                ...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            10                                      00 11233444444544443                2345


Q ss_pred             EEEeCCCCCceeeeeecc---------cceEEEEECCCCC---EEEEeeCCCeEEEeeCCCcEEEEEeeecc--------
Q 021319          174 EVLTYPSLRPLDTVVAHT---------AGCYCIAIDPMGR---YFAVGSADSLVSLWDISEMLCVRTFTKLE--------  233 (314)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~---------~~i~~i~~~~~~~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--------  233 (314)
                      ..++..+.+..-.++...         .......+..+++   .++.++.+|.+.+.|..+++.+...+...        
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~  354 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV  354 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccc
Confidence            556666555443333211         1112222222343   46788899999999999887663321100        


Q ss_pred             -----c--------------------------CeEEEEEccCCcEEEEecCC----------------------------
Q 021319          234 -----W--------------------------PVRTISFSHTGDYIASASED----------------------------  254 (314)
Q Consensus       234 -----~--------------------------~v~~~~~sp~~~~l~s~s~d----------------------------  254 (314)
                           .                          .-...+++|+..+++....+                            
T Consensus       355 ~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (571)
T d2ad6a1         355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG  434 (571)
T ss_dssp             CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccc
Confidence                 0                          00124677776665543322                            


Q ss_pred             ---------ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccc
Q 021319          255 ---------LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ  300 (314)
Q Consensus       255 ---------~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~  300 (314)
                               |.+.-+|..+|+.+.+.+...+..+=..+..+.++.+++.|+.++-
T Consensus       435 ~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A  489 (571)
T d2ad6a1         435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKA  489 (571)
T ss_dssp             TTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             cCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEE
Confidence                     5688889999999988776544433223334666767777765553

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.72  E-value=0.31  Score=37.67  Aligned_cols=178  Identities=11%  Similarity=0.168  Sum_probs=112.3

Q ss_pred             CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319           88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT  167 (314)
Q Consensus        88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      ..+|.|.|+.+.......+...+  +.-++|..+.|+.-+ ...+.++|+++.+.++......++.-..|-.....-+  
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~Ad--sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~l--  118 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPISAD--SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL--  118 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECCCS--EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEE--
T ss_pred             CceEEEEECCCCCcceecccchh--hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEE--
Confidence            35778888876654333333222  234678888888876 5689999999999998888877777777754443333  


Q ss_pred             cCCceEEEEeCCC-CCceeeeeecc----cceEEEEECCCCCEEEEee---C----CCeEEEeeCCCcEEEEEeeeccc-
Q 021319          168 TGNGTVEVLTYPS-LRPLDTVVAHT----AGCYCIAIDPMGRYFAVGS---A----DSLVSLWDISEMLCVRTFTKLEW-  234 (314)
Q Consensus       168 ~~~g~~~~~~~~~-~~~~~~~~~~~----~~i~~i~~~~~~~~l~t~~---~----dg~i~vwd~~~~~~~~~~~~~~~-  234 (314)
                      -.+..++-|+... ..|.+.+..|.    ..|-.-..++++++++..+   .    .|.+.+|..++... +.+++|.. 
T Consensus       119 VT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieGhaa~  197 (327)
T d1utca2         119 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAAS  197 (327)
T ss_dssp             ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEEE
T ss_pred             EcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccceeee
Confidence            3455688888743 34666665554    2455666788888765331   2    24677887654311 11111100 


Q ss_pred             -----------------------------------------------------------CeEEEEEccCCcEEEEecCCc
Q 021319          235 -----------------------------------------------------------PVRTISFSHTGDYIASASEDL  255 (314)
Q Consensus       235 -----------------------------------------------------------~v~~~~~sp~~~~l~s~s~d~  255 (314)
                                                                                 -.-++..|+....+..-++-|
T Consensus       198 F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G  277 (327)
T d1utca2         198 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG  277 (327)
T ss_dssp             EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTS
T ss_pred             eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCc
Confidence                                                                       012344555566777888899


Q ss_pred             eEEEEECCCCCeEEEE
Q 021319          256 FIDISNVHTGRTVHQI  271 (314)
Q Consensus       256 ~v~v~~~~~~~~~~~~  271 (314)
                      .++++|..++..+..-
T Consensus       278 ~i~lyDleTgt~i~~n  293 (327)
T d1utca2         278 YIHLYDLETGTCIYMN  293 (327)
T ss_dssp             EEEEEETTTCCEEEEE
T ss_pred             EEEEEEcccccEEEEe
Confidence            9999999999887654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.62  E-value=0.58  Score=40.20  Aligned_cols=74  Identities=9%  Similarity=0.118  Sum_probs=47.7

Q ss_pred             CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccce--eEEcCCCC
Q 021319          213 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYN  287 (314)
Q Consensus       213 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~--v~~~~~~~  287 (314)
                      |.+.-||+.+++++-+... ..+...=..+-.+.+++.|+.|+.++.+|..+|+.+.++.....+.+  +.+.-+|+
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCE
Confidence            4677778877776543321 11211112233567888899999999999999999999876444332  34445664

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.89  E-value=0.78  Score=37.47  Aligned_cols=241  Identities=12%  Similarity=0.052  Sum_probs=117.2

Q ss_pred             cEEEEEECCCCCEEEEe-eCC----CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC---------
Q 021319           22 KVHSVAWNCTGTKLASG-SVD----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---------   87 (314)
Q Consensus        22 ~V~~v~~s~~g~~l~s~-~~D----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---------   87 (314)
                      .+..+++|||+++++-+ +..    -.|++.|++++.   .....+..-  ....++|.+++..++.+.-.         
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~---~~~~~i~~~--~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK---ELPDVLERV--KFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE---EEEEEEEEE--CSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcce---ecccccccc--cccceEEcCCCCEEEEEEeccccCccccc
Confidence            45567889999987743 222    378899998642   222222211  12457888876545544321         


Q ss_pred             ------CCcEEEEeCCCCceeeeE--EecC---ceEEEEEccCCCEEEEEeC---CCc--EEEEEccCCeE--------e
Q 021319           88 ------DKTVRLWDARSGKCSQQA--ELSG---ENINITYKPDGTHIAVGNR---DDE--LTILDVRKFKP--------I  143 (314)
Q Consensus        88 ------D~~v~iwd~~~~~~~~~~--~~~~---~~~~~~~~~~~~~l~~~~~---d~~--i~i~d~~~~~~--------~  143 (314)
                            ...|..+.+.+.......  ....   -...+..++++++++....   +..  +.+.|+.....        .
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  280 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence                  125666776655332211  1111   2345667889998875433   222  34445443211        0


Q ss_pred             eeeccCcceeeEEeccCCCeEEEEc---CCceEEEEeCCCCCc--eeeeee-cccceEEEEECCCCCEEEEee-CCC--e
Q 021319          144 HRRKFGYEVNEIAWNMTGEMFFLTT---GNGTVEVLTYPSLRP--LDTVVA-HTAGCYCIAIDPMGRYFAVGS-ADS--L  214 (314)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~--~~~~~~-~~~~i~~i~~~~~~~~l~t~~-~dg--~  214 (314)
                      ..............+..+..++...   .++.+...++.....  ...+.. +...+..-.+...+.+|+..- .++  .
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~  360 (430)
T d1qfma1         281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (430)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             EeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence            0010000011111222233333333   235666565543322  122332 334444434444455665554 444  5


Q ss_pred             EEEeeCCCcEEEEEeeecccCeEEEEEccCCcEE-EEecCC---ceEEEEECCCCCe
Q 021319          215 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASED---LFIDISNVHTGRT  267 (314)
Q Consensus       215 i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~s~d---~~v~v~~~~~~~~  267 (314)
                      |++++...+............+..+...++...+ ++-+.-   ..+.-+|+.+++.
T Consensus       361 l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            8999988776554433333445555555555433 322221   5678888887753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.57  Score=35.56  Aligned_cols=177  Identities=10%  Similarity=0.030  Sum_probs=104.2

Q ss_pred             CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEe-CCCcEEEEEccCCeE---eee-e-ccCcceeeEEeccCC-
Q 021319           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKP---IHR-R-KFGYEVNEIAWNMTG-  161 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~---~~~-~-~~~~~~~~~~~~~~~-  161 (314)
                      ..|+..++.+...............+.|.+..+.|.... ..+.|.-.++.....   ... . .....+..++....+ 
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            357777877665444433344567788888877777654 445566555532211   111 1 111345567776544 


Q ss_pred             CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEe--eCCCeEEEeeCCCcEEEEEeeecccCeEEE
Q 021319          162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG--SADSLVSLWDISEMLCVRTFTKLEWPVRTI  239 (314)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  239 (314)
                      +.+++-...+.+.++++...............+..++++|...+|.-.  +..+.|.-.++............-.....+
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl  169 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  169 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEE
Confidence            455555677889999887655433344445668999999866555433  234567777775443333332222346789


Q ss_pred             EEccCCcEEEEe-cCCceEEEEECCCC
Q 021319          240 SFSHTGDYIASA-SEDLFIDISNVHTG  265 (314)
Q Consensus       240 ~~sp~~~~l~s~-s~d~~v~v~~~~~~  265 (314)
                      ++.+.++.|.-+ +..+.|...+....
T Consensus       170 ~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         170 TLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EeeccccEEEEecCCcCEEEEEECCCC
Confidence            999887766655 56678888887543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.92  E-value=1.6  Score=37.10  Aligned_cols=43  Identities=7%  Similarity=-0.072  Sum_probs=29.0

Q ss_pred             ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319          255 LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN  297 (314)
Q Consensus       255 ~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~  297 (314)
                      |.+.-+|+.+|+.+.+.+...+..+=..+..+.++..++.|+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~  499 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGR  499 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCe
Confidence            4678899999999988876555443333445667766766654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.92  E-value=1.2  Score=35.66  Aligned_cols=139  Identities=12%  Similarity=0.031  Sum_probs=83.4

Q ss_pred             eeeEEeccCCCeEEEEcCCceEEEEeCCCC---------CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC
Q 021319          152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSL---------RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE  222 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~  222 (314)
                      .+-++.+.....+++++.++ +.+......         ............+..++|+.+  .++.. .++.+..++...
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~  114 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEE  114 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSS
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeec
Confidence            44566666666666666654 445442110         000111112235788899744  55554 345688888766


Q ss_pred             cEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE------eccCccceeEEcCCCCeeEEEecCC
Q 021319          223 MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI------PCRAAMNSVEWNPKYNLLAYAGDDK  296 (314)
Q Consensus       223 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~------~~~~~i~~v~~~~~~~~la~~~~d~  296 (314)
                      ............++..+.++|.  .++....++.+..+++..++.....      .-++.+.+++|++.+..++++..++
T Consensus       115 l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~  192 (381)
T d1xipa_         115 LSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE  192 (381)
T ss_dssp             TTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE
T ss_pred             cccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc
Confidence            5444444445567888887774  4555666788888898887643321      1246788999999988887765443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.86  E-value=2.8  Score=34.35  Aligned_cols=53  Identities=6%  Similarity=-0.078  Sum_probs=38.1

Q ss_pred             cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE--EEeee------cccCeEEEEEccC
Q 021319          192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV--RTFTK------LEWPVRTISFSHT  244 (314)
Q Consensus       192 ~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~~~------~~~~v~~~~~sp~  244 (314)
                      ..+++|+|.|++++|++--..|.|++++..++...  ..+..      .+.....|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            46789999999999887755799999987766442  22211      1234678999996

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.15  E-value=0.45  Score=40.83  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=54.5

Q ss_pred             CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcce--eeEEeccCCCeEEE
Q 021319           89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV--NEIAWNMTGEMFFL  166 (314)
Q Consensus        89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  166 (314)
                      |.+.-+|+.+|++.-+.........-.....+.+++.|+.|+.++.+|.++.+.+.+.+.+...  .-+.|..+|+++++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            5677788888887666554433322223346778889999999999999999999887765443  23566677866543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.83  E-value=4.1  Score=34.48  Aligned_cols=78  Identities=12%  Similarity=0.232  Sum_probs=53.5

Q ss_pred             CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccce--eEEcCCCC-ee
Q 021319          213 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYN-LL  289 (314)
Q Consensus       213 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~--v~~~~~~~-~l  289 (314)
                      |.+.-+|+.+++++-+.... .++..=..+..+.+++.|+.|+.++.+|..+|+.+.++.....+.+  +.+..+|+ ++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            56777888888776555432 2222212345677888899999999999999999999876554432  56667775 34


Q ss_pred             EE
Q 021319          290 AY  291 (314)
Q Consensus       290 a~  291 (314)
                      |.
T Consensus       545 ~i  546 (582)
T d1flga_         545 GV  546 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.34  E-value=3  Score=32.03  Aligned_cols=87  Identities=10%  Similarity=0.158  Sum_probs=55.5

Q ss_pred             CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCC
Q 021319           41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG  120 (314)
Q Consensus        41 D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  120 (314)
                      ..+|.|-|+.....  ......     .-.++..+|.. +.|+--+ ..++.++|+.+.+..+...+....+-..|-.+.
T Consensus        44 ~~~VvIidl~n~~~--~~Rrpi-----~AdsAIMhP~~-~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~  114 (327)
T d1utca2          44 QAQVVIIDMNDPSN--PIRRPI-----SADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN  114 (327)
T ss_dssp             EEEEEEEETTSTTS--CEEEEC-----CCSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSS
T ss_pred             CceEEEEECCCCCc--ceeccc-----chhhhhcCCCC-cEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCC
Confidence            34777888764332  111111     12345668864 5666555 568999999999998888888888777777554


Q ss_pred             CEEEEEeCCCcEEEEEcc
Q 021319          121 THIAVGNRDDELTILDVR  138 (314)
Q Consensus       121 ~~l~~~~~d~~i~i~d~~  138 (314)
                       .|+..+ +..+.-|++.
T Consensus       115 -~L~lVT-~taVYHW~~~  130 (327)
T d1utca2         115 -TVALVT-DNAVYHWSME  130 (327)
T ss_dssp             -EEEEEC-SSEEEEEESS
T ss_pred             -EEEEEc-CCceEEEccc
Confidence             444443 2457777774

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.90  E-value=4.6  Score=32.13  Aligned_cols=169  Identities=8%  Similarity=0.000  Sum_probs=91.2

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEccC-------------CeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC
Q 021319          114 ITYKPDGTHIAVGNRDDELTILDVRK-------------FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS  180 (314)
Q Consensus       114 ~~~~~~~~~l~~~~~d~~i~i~d~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  180 (314)
                      ++.++...+++.|+-+ .+.|.....             .++...   -..+..++++-  +.+++. ..+.+..+....
T Consensus        42 LAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~---ip~v~~vafs~--d~l~v~-~~~~l~~~~~~~  114 (381)
T d1xipa_          42 LDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE---IPDVIFVCFHG--DQVLVS-TRNALYSLDLEE  114 (381)
T ss_dssp             EEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE---CTTEEEEEEET--TEEEEE-ESSEEEEEESSS
T ss_pred             EEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceeccC---CCCeEEEEeeC--CEEEEE-eCCCEEEEEeec
Confidence            5556666677777665 456665321             111111   12466677753  344444 445566666655


Q ss_pred             CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-----ecccCeEEEEEccCCcEEEEecCCc
Q 021319          181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-----KLEWPVRTISFSHTGDYIASASEDL  255 (314)
Q Consensus       181 ~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~s~s~d~  255 (314)
                      .........-...+..+..+|.  .++....++.+-++++.++.......     .....+.+++|++.|..++++..+.
T Consensus       115 l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~  192 (381)
T d1xipa_         115 LSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE  192 (381)
T ss_dssp             TTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE
T ss_pred             cccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc
Confidence            4433333334456777777764  56667778999999998775332211     1234577888888888887764332


Q ss_pred             eEEEE-ECCCCCeEEE-EeccCccceeEEcCCCCeeEEE
Q 021319          256 FIDIS-NVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYA  292 (314)
Q Consensus       256 ~v~v~-~~~~~~~~~~-~~~~~~i~~v~~~~~~~~la~~  292 (314)
                       ...- +......+.. ......+.+|.|--+..+++.=
T Consensus       193 -~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         193 -MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             -EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             -eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence             1110 1110000000 0012357789998777666533

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.02  E-value=4  Score=30.38  Aligned_cols=108  Identities=11%  Similarity=0.017  Sum_probs=52.7

Q ss_pred             CCEEEEeeCCC-----eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC-----ceEEEEECCCCCeEEEEe
Q 021319          203 GRYFAVGSADS-----LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRTVHQIP  272 (314)
Q Consensus       203 ~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~~~~~~~~~  272 (314)
                      +..++.|+.+.     .+..||..+......-..............++.+++.|+.+     .....+|..+.+....-+
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~  228 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP  228 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccC
Confidence            44555565543     46777776654332111111111111222346666666554     245666766543322111


Q ss_pred             c-cCccc-eeEEcCCCCeeEEEecCCcccccccceEEeccccCC
Q 021319          273 C-RAAMN-SVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA  314 (314)
Q Consensus       273 ~-~~~i~-~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~~  314 (314)
                      . ..... +++. .++++++.||.+...+   ...+.+|+++.+
T Consensus       229 ~p~~r~~~~~~~-~~~~l~v~GG~~~~~~---~~~v~~yd~~~~  268 (288)
T d1zgka1         229 MKHRRSALGITV-HQGRIYVLGGYDGHTF---LDSVECYDPDTD  268 (288)
T ss_dssp             CSSCCBSCEEEE-ETTEEEEECCBCSSCB---CCEEEEEETTTT
T ss_pred             ccCcccceEEEE-ECCEEEEEecCCCCee---cceEEEEECCCC
Confidence            1 11111 2222 3678888888776544   345788888653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=84.84  E-value=7.3  Score=30.31  Aligned_cols=122  Identities=17%  Similarity=0.181  Sum_probs=68.0

Q ss_pred             CCceEEEEeCCCCCc-ee---eee-ecccceEEEEECCCCCEEEEee-----------------CCCeEEEeeCCCcEEE
Q 021319          169 GNGTVEVLTYPSLRP-LD---TVV-AHTAGCYCIAIDPMGRYFAVGS-----------------ADSLVSLWDISEMLCV  226 (314)
Q Consensus       169 ~~g~~~~~~~~~~~~-~~---~~~-~~~~~i~~i~~~~~~~~l~t~~-----------------~dg~i~vwd~~~~~~~  226 (314)
                      ...++.++.+..... +.   .+. .....++.+++..++..++|-.                 .-+.+..||....+. 
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~-  200 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV-  200 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEE-
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEE-
Confidence            456777777643222 11   111 1123478888888898888832                 122344455433322 


Q ss_pred             EEeeecccCeEEEEEccCCcEEEEe-cCCceEEEEECCCCCeEE---EEeccCccceeEEcCCCCeeEEEe
Q 021319          227 RTFTKLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHTGRTVH---QIPCRAAMNSVEWNPKYNLLAYAG  293 (314)
Q Consensus       227 ~~~~~~~~~v~~~~~sp~~~~l~s~-s~d~~v~v~~~~~~~~~~---~~~~~~~i~~v~~~~~~~~la~~~  293 (314)
                       ...+.. -.+.|+++|++++|+.+ +..+.|++|+......+.   .+...+..-.+.+.+.+..+..++
T Consensus       201 -~~~~l~-~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         201 -VAEGFD-FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             -EEEEES-SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             -EcCCCC-ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence             222333 46889999999877655 567889999886543332   222334455677765433333443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=84.70  E-value=7.6  Score=30.42  Aligned_cols=195  Identities=14%  Similarity=0.147  Sum_probs=107.6

Q ss_pred             CCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEc----CCC-CCEEEEEe--CCC--cEEEEeCCCC
Q 021319           29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD----PKH-ADLIATAS--GDK--TVRLWDARSG   99 (314)
Q Consensus        29 s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~-~~~l~s~~--~D~--~v~iwd~~~~   99 (314)
                      .|+.++++....++-|.+||++-   ..+..  +  ..+.++.+..-    ..+ ..-++.++  .++  +|.+|.+...
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~G---~~l~~--~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~  109 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLEG---KMLHS--Y--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK  109 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETTC---CEEEE--C--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETT
T ss_pred             CcCccEEEEEcCcCCEEEEcCCC---cEEEe--c--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCc
Confidence            45667888888888899999852   12221  1  12344443321    111 11233444  223  5777766422


Q ss_pred             -ceeeeEEe--------cCc--eEEEEEccC-CC-EEEEEeCCCcEEEEEccC-------CeEeeeeccCcceeeEEecc
Q 021319          100 -KCSQQAEL--------SGE--NINITYKPD-GT-HIAVGNRDDELTILDVRK-------FKPIHRRKFGYEVNEIAWNM  159 (314)
Q Consensus       100 -~~~~~~~~--------~~~--~~~~~~~~~-~~-~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~  159 (314)
                       ........        ...  .+|+..++. +. ++++...++.+..|.+..       .+.+.....+.++..+++..
T Consensus       110 ~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDd  189 (353)
T d1h6la_         110 NGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADD  189 (353)
T ss_dssp             TTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEET
T ss_pred             ccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeC
Confidence             11111111        112  234444665 43 456777788888886632       23455666778899999999


Q ss_pred             CCCeEEEEcCCceEEEEeCCCCCc--ee---eeee--cccceEEEEEC--CCCC-E-EEEeeCCCeEEEeeCCCc-EEEE
Q 021319          160 TGEMFFLTTGNGTVEVLTYPSLRP--LD---TVVA--HTAGCYCIAID--PMGR-Y-FAVGSADSLVSLWDISEM-LCVR  227 (314)
Q Consensus       160 ~~~~~~~~~~~g~~~~~~~~~~~~--~~---~~~~--~~~~i~~i~~~--~~~~-~-l~t~~~dg~i~vwd~~~~-~~~~  227 (314)
                      ....++++-++..++.+.......  ..   ...+  ....+..+++-  .++. + +|+.-.+.+..+||.... ..+.
T Consensus       190 e~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g  269 (353)
T d1h6la_         190 EYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVA  269 (353)
T ss_dssp             TTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred             CCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccc
Confidence            999999998888887777643211  11   1111  23445666643  2333 4 444445678999998653 4554


Q ss_pred             Eee
Q 021319          228 TFT  230 (314)
Q Consensus       228 ~~~  230 (314)
                      .|.
T Consensus       270 ~F~  272 (353)
T d1h6la_         270 DFQ  272 (353)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.30  E-value=7  Score=28.91  Aligned_cols=63  Identities=14%  Similarity=0.099  Sum_probs=32.3

Q ss_pred             CCCEEEEeeCCC-----eEEEeeCCCcEEEEEeeeccc-CeEEEEEccCCcEEEEecCCc-----eEEEEECCCC
Q 021319          202 MGRYFAVGSADS-----LVSLWDISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASEDL-----FIDISNVHTG  265 (314)
Q Consensus       202 ~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~s~d~-----~v~v~~~~~~  265 (314)
                      ++..++.|+.++     ....+|..+.+... +..... .....+...++++++.|+.++     .+.++|..+.
T Consensus       195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             eeeEEEecCccccccccceeeeeecceeeec-ccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC
Confidence            355666665553     46677776654322 211111 111112224678888877553     3677777654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.25  E-value=13  Score=30.04  Aligned_cols=59  Identities=15%  Similarity=0.333  Sum_probs=38.8

Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe---------cCceEEEEEccC---CCEEEE
Q 021319           66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL---------SGENINITYKPD---GTHIAV  125 (314)
Q Consensus        66 ~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~---~~~l~~  125 (314)
                      -....+|+|.|++ +++++--..|.|++++..++.......+         ....+.++++|+   ..++.+
T Consensus        26 L~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             CCCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            3456799999975 6777665579999999887765433322         123467888875   344444