Citrus Sinensis ID: 021323

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MPPEVPYPRPLLTPLVHFSAPVSPVNNKYFRGNKKMKIPGKKMIILLVFIITSLSILRLLKLAITTSPSPPSSTLLSTLQNICSSTSPSCSNTPSYSPGTSTNLPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQSNSTRFCPAETFS
Secondary Structure (PSIPRED)
cccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEccccHHHHHHHHcccccEEEEcccHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHccccccccccccccccccccccccccHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHcccccEEEEcccHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHccccccccccccccccccEcccccccHHEEcccEEEEEEccccccccccccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHcHHHHHHccccEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
mppevpyprplltplvhfsapvspvnnkyfrgnkkmkipgkKMIILLVFIITSLSILRLLKLAittspsppsstlLSTLQnicsstspscsntpsyspgtstnlpnasalTKKEFKFLSNLitskapcnllifgldpqyLELSKANAEGITVFleddsnkinavkrksnrtqiykvdyqrpaKDAYKLLKHarqnpacaprsellpsskckltrkdlpqevfkHKWDVIvvdgprgdmleapgrmsTIYTASMLarngettnvvVHDVDRTIEKWFSWEFLCEEnlvsskgklwnfrltdqsnstrfcpaetfs
Flexible Loop (DISEMBL)
mppevpyprplltplvhfsapvspvnnkyfrgnkkmkipgkKMIILLVFIITSLSILRLLKLAITTSPSPPSSTLLSTLQNICSSTSPSCSNTPSYSPGTSTNLPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVfleddsnkinavkrksnrtqiykvdyqrPAKDAYKLLKHarqnpacaprsellpsskckltrkdlpqevfkhkwdvivvdgprgdmleapgRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNfrltdqsnstrfcpaetfs
Low Complexity Region (SEG)
MPPEVPYPRPLLTPLVHFSAPVSPVNNKYFRGNkkmkipgkkmiiLLVFIITSLSILRLLKLAIttspsppsstllstlQNIcsstspscsntpsyspGTSTNLPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQSNSTRFCPAETFS
Disordered region (IsUnstruct)
**********LLTPLVHFSAPVSPVNNKYFRGNKKMKIPGKKMIILLVFIITSLSILRLLKLAIT***********************************************KEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAV*****RTQIYKVDYQRPAKDAYKLL**************************DLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLT***************
Disordered Region (DISOPRED)
******YPRPLLTPLV**************************MIILLVFIITSLSILRLLKLAI***************************NTPSYSPGTSTN********KKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKL***A******A***ELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQS*****C******
Disordered Region (DISEMBL)
MPPEVPYPRPLLTPLVHFSAPVSPVNNKYFRGNKKMKIPGKKMIILLVFIITSLSILRLLKLAITTSPSPPSSTLLSTLQNIC********************LPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQSNSTRFCPAETFS
Disordered Region (DISPRO)
*P**VPYPRPLLTPLVHFSAPVSP**N******KKMKIPGKKMIILLVFIITSLSILRLLKLAITT***********************CSNTPSYSPGTSTNLPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQ*************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPEVPYPRPLLTPLVHFSAPVSPVNNKYFRGNKKMKIPGKKMIILLVFIITSLSILRLLKLAITTSPSPPSSTLLSTLQNICSSTSPSCSNTPSYSPGTSTNLPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQSNSTRFCPAETFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q9T0F7	290	Glucuronoxylan 4-O-methyl	no	no	0.828	0.896	0.352	2e-35
Q9SNE5	322	Protein IRREGULAR XYLEM 1	no	no	0.821	0.801	0.356	2e-34
Q6NMK1	282	Glucuronoxylan 4-O-methyl	no	no	0.614	0.684	0.415	6e-34
Q9LQ32	297	Glucuronoxylan 4-O-methyl	no	no	0.598	0.632	0.413	9e-32
Q9FH92	317	Protein IRX15-LIKE OS=Ara	no	no	0.828	0.820	0.356	1e-31

>sp|Q9T0F7|GXM2_ARATH Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana GN=GXM2 PE=1 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 143/278 (51%), Gaps = 18/278 (6%)

Query: 47  LVFIITSLSILRLLKLAITTSPSPPSSTLLSTLQ--NICSSTSPSCSNTPSYSPGTSTNL 104
           L+FI  S+ +L +L L   +  S  ++T+       + C ST   C+  P+       + 
Sbjct: 13  LIFICCSILVLFILFLKRASFSSNSTATIRDEYHQKSKCPSTPQQCTKLPTSLSDALVHY 72

Query: 105 PNASALTKKEFKFLS---NLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKI 161
             +    ++ F  +S    ++  K+PCN L+FGL    L  +  N  G T+FLE+D   I
Sbjct: 73  VTSEITPQQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFLEEDEAWI 132

Query: 162 NAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACA---PRSELLPSSKCKLTRKDLP 218
             V +K    + Y V Y    KD+ KL++  R     A   PR      SKC L+ K  P
Sbjct: 133 ETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTEDCKAVSDPRD-----SKCALSLKGFP 187

Query: 219 QEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN---GETTNVVVHDVDRTIEKW 275
            +V++ +WDVI+VD P G   EAPGRMS IYTA +LARN   G  T+V VHD++R +E  
Sbjct: 188 ADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGGETDVFVHDINRPVEDE 247

Query: 276 FSWEFLCEENLVSSKGKLWNFRLTDQ--SNSTRFCPAE 311
           FS  FLC   +   +G+L +F +     S  T FCPA+
Sbjct: 248 FSVAFLCGGYMKEQQGRLRHFNIPSHRASFGTPFCPAD 285

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 2

>sp|Q9SNE5|IRX15_ARATH Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 150/289 (51%), Gaps = 31/289 (10%)

Query: 45  ILLVFIITSLSILRLLKLAIT--TSPSPPSSTLLSTLQNICSSTSPSCSNTPSYSPGTST 102
           + L+  ++  +I+ LL L  T  T PS  +S   +    +   ++PS S     SP +++
Sbjct: 28  LWLLAFVSFFTIVFLLTLLYTRDTIPSKNTSVAAAVAAVVTGGSTPSAS-----SPISNS 82

Query: 103 NLPNAS---------------ALTKKEFKFLSNLITSKAP-CNLLIFGLDPQYLELSKAN 146
           NLP ++                ++  E K +S+++   AP CNLL+FGL  + L     N
Sbjct: 83  NLPTSAINALLHYASRSNDSFHMSYGEMKSISDVLRRCAPPCNLLVFGLTHETLLWKSLN 142

Query: 147 AEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPA--CAPRSEL 204
             G TVF+E++       +       ++ V Y   A +A +L+  A++     C P   L
Sbjct: 143 HNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNL 202

Query: 205 LPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN--GET-- 260
           L  S CKL   DLP  V+   WDVI VDGPRGD  E PGRMS+I+TA++LAR+  G T  
Sbjct: 203 L-FSDCKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMSSIFTAAVLARSKKGGTPK 261

Query: 261 TNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQS-NSTRFC 308
           T+V VHD  R +E+    EFLC ENLV S   L ++ L     NST+FC
Sbjct: 262 THVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLDKMDKNSTKFC 310

Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMK1|GXM1_ARATH Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1

 Score =  144 bits (364), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/212 (41%), Positives = 114/212 (53%), Gaps = 19/212 (8%)

Query: 111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNR 170
           T KE    S ++  K+PCN L+FGL    L  S  N  G TVFLE+D   I  +KR+   
Sbjct: 77  TLKEIAVSSRVLGKKSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEEDEAWIKQIKRRFPM 136

Query: 171 TQIYKVDYQRPAKDAYKLLKHARQNPACA----PRSELLPSSKCKLTRKDLPQEVFKHKW 226
            + Y V Y      A  L++  +  P C     PR      S C+L  K LP E+++  W
Sbjct: 137 LESYHVTYDSKVNQADNLIEVGK-GPECTAIGDPRY-----SMCQLALKGLPAEIYETGW 190

Query: 227 DVIVVDGPRGDMLEAPGRMSTIYTASMLARN---GETTNVVVHDVDRTIEKWFSWEFLCE 283
           D+I+VD P G   EAPGRM+ IYTA M+ARN   G  T+V VHDV+R IE  FS  FLCE
Sbjct: 191 DLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVNREIEDKFSKAFLCE 250

Query: 284 ENLVSSKGKLWNF-----RLTDQSNSTR-FCP 309
             +   +G+L +F     R   +S S R FCP
Sbjct: 251 GYMKKQEGRLRHFIIPSYRDGSESESNRPFCP 282

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

>sp|Q9LQ32|GXM3_ARATH Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana GN=GXM3 PE=1 SV=1

 Score =  137 bits (346), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 8/196 (4%)

Query: 121 LITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQR 180
           ++  K+PCN L+FGL    L  +  N  G T+F+E+D   I  V +K    + Y V Y  
Sbjct: 100 VLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDT 159

Query: 181 PAKDAYKLLKHARQNPACAPRSELLP-SSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDML 239
             KD+ KL++  R       RS   P +SKC L  KD P + ++ KWD+I+VD P G   
Sbjct: 160 KVKDSDKLMELGRSEEC---RSVSDPRNSKCDLALKDFPADFYETKWDLIMVDAPTGYHE 216

Query: 240 EAPGRMSTIYTASMLARNGE--TTNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFR 297
           EAPGRMS IYTA +LARN E   T+V VHDV+R +E  FS  FLC+  +    G+L +F 
Sbjct: 217 EAPGRMSAIYTAGLLARNREDGETDVFVHDVNRPVEDEFSATFLCKGYMREQNGRLRHFT 276

Query: 298 L-TDQSNSTR-FCPAE 311
           + + ++ + R FCP E
Sbjct: 277 IPSHRARAGRPFCPVE 292

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

>sp|Q9FH92|IX15L_ARATH Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/278 (35%), Positives = 148/278 (53%), Gaps = 18/278 (6%)

Query: 46  LLVFIITSLSILRLLKLAITTSPSPPSSTLLSTLQNICSS--TSPSCSNTPSYSPGTSTN 103
           LL F+ +  +I  LL L  TT     S    +T+ +  +S  T+ + S  P+ +     +
Sbjct: 29  LLAFV-SFFTIAFLLTLLYTTDSIISSKNNSATVSSAVNSAVTTATISQLPTTAINAMLH 87

Query: 104 LPNAS----ALTKKEFKFLSNLITSKAP-CNLLIFGLDPQYLELSKANAEGITVFLEDDS 158
             + S     ++  E K +S+++   +P CNLL+FGL  + L     N  G TVF+E++ 
Sbjct: 88  YASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENR 147

Query: 159 NKINAVKRKSNRTQIYKVDYQRPAKDAYKLL---KHARQNPACAPRSELLPSSKCKLTRK 215
                 +      +++ V Y   A++A +L+   K A +N  C P   LL  S CKL   
Sbjct: 148 YYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNE-CRPVQNLL-FSDCKLGLN 205

Query: 216 DLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGET----TNVVVHDVDRT 271
           DLP  V+   WDVI+VDGPRGD  + PGRMS+I+TA++LAR+ +     T+V VHD  R 
Sbjct: 206 DLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHVFVHDYYRD 265

Query: 272 IEKWFSWEFLCEENLVSSKGKLWNFRLTDQS-NSTRFC 308
           +E+    EFLC ENLV S   L ++ L     NST+FC
Sbjct: 266 VERLCGDEFLCRENLVESNDLLAHYVLEKMDKNSTQFC 303

Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
359491556	326	PREDICTED: uncharacterized protein LOC10	0.993	0.957	0.583	1e-103
224136179	314	predicted protein [Populus trichocarpa]	0.961	0.961	0.615	1e-102
255540229	328	conserved hypothetical protein [Ricinus	0.971	0.929	0.572	3e-96
356563208	331	PREDICTED: uncharacterized protein LOC10	1.0	0.948	0.553	1e-85
356513673	292	PREDICTED: uncharacterized protein LOC10	0.894	0.962	0.571	2e-84
356507360	292	PREDICTED: uncharacterized protein LOC10	0.681	0.732	0.605	2e-71
297799506	316	hypothetical protein ARALYDRAFT_914095 [	0.945	0.939	0.496	7e-65
15234787	315	uncharacterized protein [Arabidopsis tha	0.942	0.939	0.489	1e-64
116830603	316	unknown [Arabidopsis thaliana]	0.942	0.936	0.489	1e-64
356518884	304	PREDICTED: uncharacterized protein LOC10	0.665	0.687	0.615	3e-60

>gi|359491556|ref|XP_002280115.2| PREDICTED: uncharacterized protein LOC100254191 [Vitis vinifera]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/324 (58%), Positives = 237/324 (73%), Gaps = 12/324 (3%)

Query: 1   MPPEVPYPRPLLTPLVHFSAPVS-------PVNNKYFRGNKKMKIPGKKMIILLVFIITS 53
           MPP+     PL+T    F  PVS       P++ KY+RG K+MK  GK+ I +LVFI++ 
Sbjct: 1   MPPDAFACHPLVTCRPQFLHPVSLKKQLDLPLSCKYYRGGKRMKFIGKRSITVLVFILSI 60

Query: 54  LSILRLLKLAIT-TSPSPPSSTLLSTLQNICSSTSPSCSNTPSYSPGT----STNLPNAS 108
           +SILR L + +T +S S P   L  T  + CSS SP+C  TP  +PG       N  NA+
Sbjct: 61  ISILRFLWITVTASSSSRPLPALPPTSLHTCSSASPTCRKTPLRAPGARRSQHNNSANAT 120

Query: 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKS 168
           ALT+KEF+ LSNLI+ +APCNLLIFGL+PQ+L L+  NA G T+ LEDD  K++ V+R+S
Sbjct: 121 ALTEKEFQLLSNLISHRAPCNLLIFGLEPQHLVLASMNAGGTTILLEDDPAKLSTVRRRS 180

Query: 169 NRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDV 228
           N T+IYKV++  PA +AY++LKHAR++PACAP S+ L  S C+L    LPQEV++ KWDV
Sbjct: 181 NNTRIYKVEHHIPAGEAYRVLKHAREDPACAPHSKPLEESTCQLALTKLPQEVYELKWDV 240

Query: 229 IVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLVS 288
           +VVDGPRGD  EAPGRM+ IYTASM+AR G  TNVVVHDVDR IEKWFSWEFLC+ENLVS
Sbjct: 241 VVVDGPRGDRAEAPGRMAAIYTASMIARAGNMTNVVVHDVDRMIEKWFSWEFLCDENLVS 300

Query: 289 SKGKLWNFRLTDQSNSTRFCPAET 312
           SKGKLWNFRL  +SNSTRFCP+ET
Sbjct: 301 SKGKLWNFRLVGKSNSTRFCPSET 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136179|ref|XP_002322260.1| predicted protein [Populus trichocarpa] gi|222869256|gb|EEF06387.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/312 (61%), Positives = 238/312 (76%), Gaps = 10/312 (3%)

Query: 1   MPPEVPYPRPLLTPLVHFSAPVSPVNNKYFRGNKKMKIPGKKMIILLVFIITSLSILRLL 60
           MPPEVP+ R L TPLV  S P SP +   FR NK M IPG+K+I  +VFI+  +SILRLL
Sbjct: 1   MPPEVPHYRSLATPLVKSSPPSSPESQ--FR-NKSMAIPGRKLIPSVVFILACISILRLL 57

Query: 61  KLAITTSPSPPSSTLLSTLQNICSSTSPSCSNTPSYSPGTSTNLPNASA----LTKKEFK 116
           ++AITTSPS P   L  TLQ+ CS+ SP+C   PS++P   T     +A    LTKKEFK
Sbjct: 58  RIAITTSPSAP---LPPTLQHTCSTPSPACEKAPSHTPSNQTAQQKIAADEPSLTKKEFK 114

Query: 117 FLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKV 176
            LS+LI  KAPCNLL+FG +PQYL LS  N+ G T+ LEDD +KI+A + KSN TQIYK+
Sbjct: 115 LLSDLIKRKAPCNLLVFGAEPQYLRLSSINSGGTTILLEDDPDKISAARAKSNTTQIYKI 174

Query: 177 DYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRG 236
           DYQ PAK AYKLL+HAR++PACAP  E+L +S CKL  K+LP+EV++ +W+V+VVDGP G
Sbjct: 175 DYQTPAKKAYKLLEHARKSPACAPNPEMLQNSSCKLALKNLPREVYELEWNVVVVDGPSG 234

Query: 237 DMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNF 296
              EAPGRM  IYTASM+AR G TT+V+VHDVDRTIEKWFSWEFLC+ENLV+SKGKLW+F
Sbjct: 235 HSPEAPGRMGAIYTASMIARAGNTTDVLVHDVDRTIEKWFSWEFLCDENLVASKGKLWSF 294

Query: 297 RLTDQSNSTRFC 308
           R++ +SNS+ FC
Sbjct: 295 RISGKSNSSGFC 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540229|ref|XP_002511179.1| conserved hypothetical protein [Ricinus communis] gi|223550294|gb|EEF51781.1| conserved hypothetical protein [Ricinus communis]

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 185/323 (57%), Positives = 231/323 (71%), Gaps = 18/323 (5%)

Query: 1   MPPEVPYPRPLLTPLVHFSAPVSP-------VNNKYFRGNKKMKIPGKKMIILLVFIITS 53
           MPPE+P+ R   TPLV FS   SP       V+ K F+GNK MKIPG+K++ LLVFI+++
Sbjct: 1   MPPELPHYRSFATPLVRFSPSSSPEAHLIIPVSCKSFKGNKIMKIPGRKIMPLLVFILST 60

Query: 54  LSILRLLKLAITTSPSPPSSTLLS----TLQNICSSTSPSCSNTPSYS----PGTSTNLP 105
           +SILRLL++A TT  S   ++LL     T+Q+ C S+S  CS   S      P    +  
Sbjct: 61  ISILRLLRIATTTKSS---TSLLPALPPTMQHACHSSSTKCSAVSSNISSSPPTQQNSST 117

Query: 106 NASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVK 165
           +A+ LTKKEFK LSN+I  KAPCNLLIFGL  Q+L+LS  N+ G T+FLEDD ++I++++
Sbjct: 118 SATILTKKEFKLLSNVIKHKAPCNLLIFGLSAQFLKLSSINSGGTTIFLEDDPDRISSIR 177

Query: 166 RKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHK 225
            KSN T IYK DY  PAK AY LLKHAR++  CAP S  L +S CKL   +LP EV++ K
Sbjct: 178 AKSNSTLIYKFDYHVPAKKAYNLLKHARESQDCAPSSGRLQNSTCKLALTNLPGEVYQQK 237

Query: 226 WDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEEN 285
           WDV+VVDGP G   EAPGRM+ IYTA M+AR G TT+V+VHDVDRTIEKWFSWEFLC+EN
Sbjct: 238 WDVVVVDGPSGHSPEAPGRMAAIYTAGMIARAGHTTDVLVHDVDRTIEKWFSWEFLCDEN 297

Query: 286 LVSSKGKLWNFRLTDQSNSTRFC 308
           LVSSKGKLWNFR+T + NS  FC
Sbjct: 298 LVSSKGKLWNFRITSKPNSRTFC 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563208|ref|XP_003549856.1| PREDICTED: uncharacterized protein LOC100775386 [Glycine max]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 181/327 (55%), Positives = 228/327 (69%), Gaps = 13/327 (3%)

Query: 1   MPPEVPYPRPLLTPLVHFSAPVS-------PVNNKYFRGNKKMKIPGKKMIILLVFIITS 53
           MPP+V + RPLL+PLV FS  ++       P   KY++G K M +  KK+I +LV I++ 
Sbjct: 1   MPPDVLHFRPLLSPLVQFSPSLASRVQENQPCAKKYWQGMKGMNLTKKKLIPILVLILSI 60

Query: 54  LSILRLLKLAITTSP-SPPSSTLLSTLQNICSSTSPSCSNTPSYSPGTSTN--LPN--AS 108
           +SILRLL L   TS  S   S L S  Q  CS    +C+ T S++P +S     P+   +
Sbjct: 61  ISILRLLSLNAKTSLFSTGISVLSSAPQQNCSQPLSTCNKTASHTPESSDKPMKPHNITT 120

Query: 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKS 168
            LT+KEFK LS+LI  K+PCNLLIFG  PQYL LS  NA G T+FL+DDS+KI+  ++ S
Sbjct: 121 TLTEKEFKVLSDLIALKSPCNLLIFGFQPQYLILSSMNAAGSTIFLDDDSHKISKERKIS 180

Query: 169 NRTQIYKVDYQRPAKDAYKLLKHARQNPA-CAPRSELLPSSKCKLTRKDLPQEVFKHKWD 227
           N TQI+K++Y  PAK  YKLLKHARQNPA C P    L  SKCKL  K+LP +V++  WD
Sbjct: 181 NNTQIHKLEYNMPAKAGYKLLKHARQNPAACVPNPRFLQKSKCKLALKNLPSQVYEKNWD 240

Query: 228 VIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLV 287
           V+VVDGP GD  E+PGRM +IYTAS+LAR G  ++VVVHDVDR IEKWFSWEFLC+ENL+
Sbjct: 241 VMVVDGPSGDSPESPGRMGSIYTASVLARAGNVSDVVVHDVDRMIEKWFSWEFLCDENLL 300

Query: 288 SSKGKLWNFRLTDQSNSTRFCPAETFS 314
            SKGKLW+FR+   +NSTRFCPAE  S
Sbjct: 301 YSKGKLWHFRVRGHTNSTRFCPAEEGS 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513673|ref|XP_003525535.1| PREDICTED: uncharacterized protein LOC100792528 [Glycine max]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 164/287 (57%), Positives = 208/287 (72%), Gaps = 6/287 (2%)

Query: 34  KKMKIPGKKMIILLVFIITSLSILRLLKLAITTSPSPPSSTLLSTL-QNICSSTSPSCSN 92
           K M +  KK+I +LV I++ +SILRLL L + T P     ++LS   Q+ CS    +C+ 
Sbjct: 2   KGMNLTKKKLIPILVLILSVISILRLLSLNVKTLPFSARISVLSPAPQHNCSQPLSTCNK 61

Query: 93  TPSYSPGTS---TNLPN-ASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE 148
           T S++P +S    N PN  + LT+KEFK LS+LI  K+PCNLLIFG  PQYL LS  NA 
Sbjct: 62  TASHAPESSDQPINTPNITTTLTEKEFKVLSDLIALKSPCNLLIFGFQPQYLILSSMNAA 121

Query: 149 GITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPA-CAPRSELLPS 207
           G T+FL++D +KI+ V++ SN TQIYK++Y  PAK  YKLLK+AR NPA C P    L  
Sbjct: 122 GSTIFLDEDPDKISKVRKISNNTQIYKLEYNMPAKAGYKLLKNARLNPATCVPNPRFLQK 181

Query: 208 SKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHD 267
           SKCKL  K+LP +V++ KWDV+VVDGP GD  E+PGRM +IYTAS+LAR+G T++VVVHD
Sbjct: 182 SKCKLALKNLPSQVYEKKWDVMVVDGPNGDSPESPGRMGSIYTASVLARSGNTSDVVVHD 241

Query: 268 VDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQSNSTRFCPAETFS 314
           VDR IEKWFSWEFLC+ NL+ SKGKLW+FR+   SNSTRFCPAE  S
Sbjct: 242 VDRMIEKWFSWEFLCDGNLLYSKGKLWHFRIKVHSNSTRFCPAEEGS 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507360|ref|XP_003522435.1| PREDICTED: uncharacterized protein LOC100787566 [Glycine max]

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 132/218 (60%), Positives = 163/218 (74%), Gaps = 4/218 (1%)

Query: 93  TPSYSPGTSTNLPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITV 152
           T S++P +S + PN S LT+KEFK LSNL+  K+PCNLLIFG  PQYL LS  NA G T+
Sbjct: 75  TASHAPESSKH-PN-STLTEKEFKVLSNLVALKSPCNLLIFGFQPQYLTLSSMNAPGSTI 132

Query: 153 FLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPR--SELLPSSKC 210
           FL D  + I  V   SN TQ Y++ Y  P+K A+ LLKHARQN ACAP   ++LL  SKC
Sbjct: 133 FLYDHDDMIAKVATNSNNTQTYQLGYNVPSKKAFNLLKHARQNQACAPSYPTQLLQKSKC 192

Query: 211 KLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDR 270
           K   ++LP EV++ KWD+IVVDGP+GD  E+PGRM +IYTAS+LAR G  ++VVVHD+DR
Sbjct: 193 KFALRNLPSEVYEKKWDIIVVDGPKGDSPESPGRMDSIYTASVLARAGNVSDVVVHDIDR 252

Query: 271 TIEKWFSWEFLCEENLVSSKGKLWNFRLTDQSNSTRFC 308
            IEKWFSWEFLC ENL+ SKGKLW+FR++  SNST FC
Sbjct: 253 MIEKWFSWEFLCHENLLCSKGKLWHFRISGHSNSTTFC 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799506|ref|XP_002867637.1| hypothetical protein ARALYDRAFT_914095 [Arabidopsis lyrata subsp. lyrata] gi|297313473|gb|EFH43896.1| hypothetical protein ARALYDRAFT_914095 [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (647), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 162/326 (49%), Positives = 205/326 (62%), Gaps = 29/326 (8%)

Query: 1   MPPEVPYPR-PLLTPLVHFSAPVSPVNNKYFRGN--KKMKIPGKKMIILLVFIITSLSIL 57
           MPP++     P+L PL+ FS P SP N K  R +  K  K    K+I LL+F+++SLS+L
Sbjct: 1   MPPQLHQSSLPILNPLLRFSPPSSPDNPKNQRVSTIKMPKFTVCKLIPLLIFVLSSLSVL 60

Query: 58  RLLKLAITTSPSPPSSTLLSTLQNICSSTSPSCSNTPSYSPGTSTNLPNAS----ALTKK 113
           RLL+++  +S S   S+  +T                  SP  S+    A+    ALT+K
Sbjct: 61  RLLRISYKSSSSTSQSSSSTTFH---------------LSPAESSQQLRANEGPYALTEK 105

Query: 114 EFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSN--RT 171
           E K LS+ +T ++PCN+L+FG  PQYL L   N  GITV LED   KI   K + N   T
Sbjct: 106 ELKLLSDTVTRRSPCNVLVFGFAPQYLMLPAINTRGITVILEDVPEKIMIPKAEVNPNNT 165

Query: 172 QIYKVDY-QRPAKDAYKLLKHARQNPACAPR-SELLPSSKCKLTRKDLPQEVFKHKWDVI 229
           +IY   Y Q   K+AYKLL+HAR N ACAP+ + L  SS CK+  +DLPQEV   KWDVI
Sbjct: 166 RIYSFKYHQMEVKNAYKLLRHARANSACAPKMNNLQGSSACKMQLRDLPQEVHNTKWDVI 225

Query: 230 VVDGPRGDMLEAPGRMSTIYTASMLARNGE---TTNVVVHDVDRTIEKWFSWEFLCEENL 286
           VVDGPRGD  EAPGRM +IYTA++LAR G    TT+V VHDV RT EKW SWEFLC+ENL
Sbjct: 226 VVDGPRGDNFEAPGRMGSIYTAAVLARKGSSNSTTDVFVHDVHRTAEKWLSWEFLCQENL 285

Query: 287 VSSKGKLWNFRLTDQSNSTRFCPAET 312
           VS+KG  W FR+  QSN++RFC  ET
Sbjct: 286 VSAKGNFWKFRIKGQSNASRFCSPET 311

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234787|ref|NP_194221.1| uncharacterized protein [Arabidopsis thaliana] gi|4455234|emb|CAB36733.1| putative protein [Arabidopsis thaliana] gi|7269341|emb|CAB79400.1| putative protein [Arabidopsis thaliana] gi|91805611|gb|ABE65534.1| hypothetical protein At4g24910 [Arabidopsis thaliana] gi|332659575|gb|AEE84975.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 160/327 (48%), Positives = 206/327 (62%), Gaps = 31/327 (9%)

Query: 1   MPPEVPYPR-PLLTPLVHFSAPVSPVNNKYFRGN--KKMKIPGKKMIILLVFIITSLSIL 57
           MPP+       +L PL+ FS P SP N K+ R +  K  K   +K+I LL+F+++SLS+L
Sbjct: 1   MPPQFHQSSLSILNPLLRFSPPSSPDNPKHQRLSTIKMPKFTVRKLIPLLIFVLSSLSVL 60

Query: 58  RLLKLAITTSPSPPSSTLLSTLQNICSSTSPSCSNTPSYSPGTSTNLPNA----SALTKK 113
           RLL+++  +S                S +  S S T   SP  S+    A    +AL +K
Sbjct: 61  RLLRISYKSS----------------SKSQSSSSTTFRLSPADSSQQLRANEGPTALMEK 104

Query: 114 EFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSN--RT 171
           E K LS+ +T ++PCN+L+FG  PQYL LS  N  GITV LED+  KI   K + N   T
Sbjct: 105 ELKLLSDTVTRRSPCNILVFGFAPQYLMLSSINTRGITVILEDEPAKIMIPKAEVNPNNT 164

Query: 172 QIYKVDY-QRPAKDAYKLLKHARQNPACAPR--SELLPSSKCKLTRKDLPQEVFKHKWDV 228
           +IY + Y Q   ++AY LL+HAR NPACAP   ++   SS CKL  +DLPQ+V   KWDV
Sbjct: 165 RIYSLKYHQMEVRNAYNLLQHARANPACAPNMNNQHQGSSDCKLELRDLPQQVHNTKWDV 224

Query: 229 IVVDGPRGDMLEAPGRMSTIYTASMLARNGE---TTNVVVHDVDRTIEKWFSWEFLCEEN 285
           IVVDGPRGD LE PGRM +IYTA++LAR G    TT+V VHDV RT EKW SWEFLC+EN
Sbjct: 225 IVVDGPRGDDLETPGRMGSIYTAAVLARKGSSNSTTDVFVHDVHRTAEKWLSWEFLCQEN 284

Query: 286 LVSSKGKLWNFRLTDQSNSTRFCPAET 312
           LVS+KG  W FR+  QSN++RFC  ET
Sbjct: 285 LVSAKGTFWKFRIKRQSNASRFCSPET 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830603|gb|ABK28259.1| unknown [Arabidopsis thaliana]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 160/327 (48%), Positives = 206/327 (62%), Gaps = 31/327 (9%)

Query: 1   MPPEVPYPR-PLLTPLVHFSAPVSPVNNKYFRGN--KKMKIPGKKMIILLVFIITSLSIL 57
           MPP+       +L PL+ FS P SP N K+ R +  K  K   +K+I LL+F+++SLS+L
Sbjct: 1   MPPQFHQSSLSILNPLLRFSPPSSPDNPKHQRLSTIKMPKFTVRKLIPLLIFVLSSLSVL 60

Query: 58  RLLKLAITTSPSPPSSTLLSTLQNICSSTSPSCSNTPSYSPGTSTNLPNA----SALTKK 113
           RLL+++  +S                S +  S S T   SP  S+    A    +AL +K
Sbjct: 61  RLLRISYKSS----------------SKSQSSSSTTFRLSPADSSQQLRANEGPTALMEK 104

Query: 114 EFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSN--RT 171
           E K LS+ +T ++PCN+L+FG  PQYL LS  N  GITV LED+  KI   K + N   T
Sbjct: 105 ELKLLSDTVTRRSPCNILVFGFAPQYLMLSSINTRGITVILEDEPAKIMIPKAEVNPNNT 164

Query: 172 QIYKVDY-QRPAKDAYKLLKHARQNPACAPR--SELLPSSKCKLTRKDLPQEVFKHKWDV 228
           +IY + Y Q   ++AY LL+HAR NPACAP   ++   SS CKL  +DLPQ+V   KWDV
Sbjct: 165 RIYSLKYHQMEVRNAYNLLQHARANPACAPNMNNQHQGSSDCKLELRDLPQQVHNTKWDV 224

Query: 229 IVVDGPRGDMLEAPGRMSTIYTASMLARNGE---TTNVVVHDVDRTIEKWFSWEFLCEEN 285
           IVVDGPRGD LE PGRM +IYTA++LAR G    TT+V VHDV RT EKW SWEFLC+EN
Sbjct: 225 IVVDGPRGDDLETPGRMGSIYTAAVLARKGSSNSTTDVFVHDVHRTAEKWLSWEFLCQEN 284

Query: 286 LVSSKGKLWNFRLTDQSNSTRFCPAET 312
           LVS+KG  W FR+  QSN++RFC  ET
Sbjct: 285 LVSAKGTFWKFRIKRQSNASRFCSPET 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518884|ref|XP_003528107.1| PREDICTED: uncharacterized protein LOC100798729 [Glycine max]

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/216 (61%), Positives = 157/216 (72%), Gaps = 7/216 (3%)

Query: 96  YSPGTSTNLPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLE 155
           ++P +S + PN S LT+KEFK LSNL+  K+P NLLIFG  PQYL LS  NA G T+FL 
Sbjct: 91  HAPDSSKH-PN-STLTEKEFKVLSNLVALKSPSNLLIFGFQPQYLTLSSMNAPGSTIFLY 148

Query: 156 DDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNP-ACAPR--SELLPSSKCKL 212
           DD   I  V   SN TQ YK+ Y  P+K AY LLKHARQN  ACAP     LL  SKCKL
Sbjct: 149 DD--MIAKVATNSNNTQTYKLGYNVPSKKAYNLLKHARQNQLACAPSYPKLLLQKSKCKL 206

Query: 213 TRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTI 272
              +LP EV++ KWD+IVVDGP+GD  E+PGRM +IYTAS+LAR G  ++VVVHDVDR I
Sbjct: 207 ALMNLPAEVYEKKWDIIVVDGPKGDSPESPGRMGSIYTASVLARAGNVSDVVVHDVDRMI 266

Query: 273 EKWFSWEFLCEENLVSSKGKLWNFRLTDQSNSTRFC 308
           EKWFS EFLC ENL+ SKGKLW+FR++  SNST FC
Sbjct: 267 EKWFSLEFLCHENLLCSKGKLWHFRISGHSNSTTFC 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2117378	315	AT4G24910 "AT4G24910" [Arabido	0.955	0.952	0.461	3.2e-65
TAIR|locus:2047158	329	AT2G15440 "AT2G15440" [Arabido	0.621	0.592	0.397	2.4e-35
TAIR|locus:2012350	282	GXM3 "glucuronoxylan methyltra	0.624	0.695	0.416	2.7e-34
TAIR|locus:2019519	291	AT1G67330 "AT1G67330" [Arabido	0.652	0.704	0.377	3.6e-34
TAIR|locus:2013066	295	AT1G71690 "AT1G71690" [Arabido	0.633	0.674	0.386	6.7e-33
TAIR|locus:2140518	290	GXM2 "glucuronoxylan methyltra	0.630	0.682	0.405	4.7e-32
TAIR|locus:2012728	297	GXMT1 "glucuronoxylan methyltr	0.630	0.666	0.402	9.8e-32
TAIR|locus:2010449	289	AT1G27930 "AT1G27930" [Arabido	0.656	0.712	0.363	1.6e-31
TAIR|locus:2074815	322	IRX15 "AT3G50220" [Arabidopsis	0.617	0.602	0.418	6.9e-31
TAIR|locus:2155518	317	IRX15-L "AT5G67210" [Arabidops	0.614	0.608	0.406	1.8e-30

TAIR|locus:2117378 AT4G24910 "AT4G24910" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 149/323 (46%), Positives = 191/323 (59%)

Query:     1 MPPEVPYPR-PLLTPLVHFSAPVSPVNNKYFRGNXXXXXXXXXXXX--LLVFIITSLSIL 57
             MPP+       +L PL+ FS P SP N K+ R +              LL+F+++SLS+L
Sbjct:     1 MPPQFHQSSLSILNPLLRFSPPSSPDNPKHQRLSTIKMPKFTVRKLIPLLIFVLSSLSVL 60

Query:    58 RLLKLAIXXXXXXXXXXXXXXXQNIXXXXXXXXXXXXXXXXGTSTNLPNASALTKKEFKF 117
             RLL+++                 +                 G     P  +AL +KE K 
Sbjct:    61 RLLRISYKSSSKSQSSSSTTFRLS-----PADSSQQLRANEG-----P--TALMEKELKL 108

Query:   118 LSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK--SNRTQIYK 175
             LS+ +T ++PCN+L+FG  PQYL LS  N  GITV LED+  KI   K +   N T+IY 
Sbjct:   109 LSDTVTRRSPCNILVFGFAPQYLMLSSINTRGITVILEDEPAKIMIPKAEVNPNNTRIYS 168

Query:   176 VDY-QRPAKDAYKLLKHARQNPACAPR--SELLPSSKCKLTRKDLPQEVFKHKWDVIVVD 232
             + Y Q   ++AY LL+HAR NPACAP   ++   SS CKL  +DLPQ+V   KWDVIVVD
Sbjct:   169 LKYHQMEVRNAYNLLQHARANPACAPNMNNQHQGSSDCKLELRDLPQQVHNTKWDVIVVD 228

Query:   233 GPRGDMLEAPGRMSTIYTASMLARNGE---TTNVVVHDVDRTIEKWFSWEFLCEENLVSS 289
             GPRGD LE PGRM +IYTA++LAR G    TT+V VHDV RT EKW SWEFLC+ENLVS+
Sbjct:   229 GPRGDDLETPGRMGSIYTAAVLARKGSSNSTTDVFVHDVHRTAEKWLSWEFLCQENLVSA 288

Query:   290 KGKLWNFRLTDQSNSTRFCPAET 312
             KG  W FR+  QSN++RFC  ET
Sbjct:   289 KGTFWKFRIKRQSNASRFCSPET 311

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2047158 AT2G15440 "AT2G15440" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 81/204 (39%), Positives = 122/204 (59%)

Query:   100 TSTNLPNASALTKKEFKFLSNLITSKAP-CNLLIFGLDPQYLELSKANAEGITVFLEDDS 158
             TS++ PN S ++  E   +SN+I S  P CNLLIFGL  + L     N +G TVF+++  
Sbjct:    86 TSSSPPNTS-MSFLELSTISNIIHSHGPACNLLIFGLTHESLLWRSINFQGRTVFVDESP 144

Query:   159 NKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLP 218
               ++  ++ +   + Y+V Y      A KLL + +  P C P   LL  S CKL   DLP
Sbjct:   145 YSVSKFEQSNPGVEAYEVVYSTKVSQAKKLLGYYKTRPECRPVQNLL-FSDCKLGINDLP 203

Query:   219 QEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGE------TTNVVVHDVDRTI 272
               V++  WDVI++DGPRG   ++PGRM+ I+T+++LA++ +       T+V+VH+  R I
Sbjct:   204 NFVYEIDWDVILIDGPRGYASDSPGRMAPIFTSAVLAKSKDFGTKTKKTDVLVHEFGRKI 263

Query:   273 EKWFSWEFLCEENLVSSKGKLWNF 296
             E+ +S EFLCEENL+   G L +F
Sbjct:   264 ERVYSEEFLCEENLIEVVGDLGHF 287

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2012350 GXM3 "glucuronoxylan methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 87/209 (41%), Positives = 114/209 (54%)

Query:   111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNR 170
             T KE    S ++  K+PCN L+FGL    L  S  N  G TVFLE+D   I  +KR+   
Sbjct:    77 TLKEIAVSSRVLGKKSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEEDEAWIKQIKRRFPM 136

Query:   171 TQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPS-SKCKLTRKDLPQEVFKHKWDVI 229
              + Y V Y      A  L++  +  P C    +  P  S C+L  K LP E+++  WD+I
Sbjct:   137 LESYHVTYDSKVNQADNLIEVGK-GPECTAIGD--PRYSMCQLALKGLPAEIYETGWDLI 193

Query:   230 VVDGPRGDMLEAPGRMSTIYTASMLARN---GETTNVVVHDVDRTIEKWFSWEFLCEENL 286
             +VD P G   EAPGRM+ IYTA M+ARN   G  T+V VHDV+R IE  FS  FLCE  +
Sbjct:   194 MVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVNREIEDKFSKAFLCEGYM 253

Query:   287 VSSKGKLWNF-----RLTDQSNSTR-FCP 309
                +G+L +F     R   +S S R FCP
Sbjct:   254 KKQEGRLRHFIIPSYRDGSESESNRPFCP 282

GO:0005576 "extracellular region" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2019519 AT1G67330 "AT1G67330" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 83/220 (37%), Positives = 127/220 (57%)

Query:   100 TSTNLPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSN 159
             TS  +P  S    +E     N++  + PCN L+FGL    L  +  N  G TVFLE+D  
Sbjct:    76 TSHTVPQQSF---EEISISLNVLKERLPCNFLVFGLGRDSLMWASLNPGGTTVFLEEDPE 132

Query:   160 KINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLP---SSKCKLTRKD 216
              I AV + +   + + V Y+    +A +LL   +  P C P ++  P   + KC L    
Sbjct:   133 WIEAVLKDAPSLRAHHVQYRTHLSEAGRLLSTYKNEPMCLP-AKAFPIRYNEKCPLALTS 191

Query:   217 LPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN--GE-TTNVVVHDVDRTIE 273
             LP E +  +WD+I+VD P+G   EAPGRM+ I++++++ARN  G+ TT+V +HDV+R +E
Sbjct:   192 LPDEFYDTEWDLIMVDAPKGYFPEAPGRMAAIFSSAIMARNRKGDGTTHVFLHDVNRKVE 251

Query:   274 KWFSWEFLCEENLVSSKGKLWNFRLTDQSNST-----RFC 308
               F+ EFLCE+  V+S G+LW+F + + +N T     RFC
Sbjct:   252 NAFANEFLCEKYKVNSVGRLWHFEIPNAANMTDQPGDRFC 291

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2013066 AT1G71690 "AT1G71690" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 80/207 (38%), Positives = 111/207 (53%)

Query:   111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNR 170
             T  E       +  K+PCN L+FGL    L  +  N  G T+FL++D + I+ +  K   
Sbjct:    89 TLSEISVTKKELEKKSPCNFLVFGLGHDSLMWATLNHGGRTIFLDEDESWIHQIAEKFPS 148

Query:   171 TQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIV 230
              + Y V Y+   +DA  L+   +    C   S  L  S C+L  K LP+ V++ +WD+I+
Sbjct:   149 LESYHVRYKTKVRDAEALMAATKDREECRRVSTDLRVSTCELALKGLPEVVYETEWDLIM 208

Query:   231 VDGPRGDMLEAPGRMSTIYTASMLARNG----ETTNVVVHDVDRTIEKWFSWEFLCEENL 286
             VD P G   EAPGRMS IYTA M+AR      ETT V VHDVDR +E  FS EFLC + +
Sbjct:   209 VDAPTGFHEEAPGRMSAIYTAGMIARRRKDEEETTAVFVHDVDRKVEDEFSMEFLCRDYM 268

Query:   287 VSSKGKLWNFRLTDQSN----STRFCP 309
                +G+L +F +    N      +FCP
Sbjct:   269 TKQEGRLRHFTVPSHRNYGVSGVKFCP 295

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140518 GXM2 "glucuronoxylan methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 84/207 (40%), Positives = 114/207 (55%)

Query:   111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNR 170
             T  E      ++  K+PCN L+FGL    L  +  N  G T+FLE+D   I  V +K   
Sbjct:    82 TFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFLEEDEAWIETVTKKFPN 141

Query:   171 TQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLP-SSKCKLTRKDLPQEVFKHKWDVI 229
              + Y V Y    KD+ KL++  R    C   S+  P  SKC L+ K  P +V++ +WDVI
Sbjct:   142 LESYHVVYDTKVKDSNKLMELKRTED-CKAVSD--PRDSKCALSLKGFPADVYETQWDVI 198

Query:   230 VVDGPRGDMLEAPGRMSTIYTASMLARN---GETTNVVVHDVDRTIEKWFSWEFLCEENL 286
             +VD P G   EAPGRMS IYTA +LARN   G  T+V VHD++R +E  FS  FLC   +
Sbjct:   199 MVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGGETDVFVHDINRPVEDEFSVAFLCGGYM 258

Query:   287 VSSKGKLWNFRLTDQSNS--TRFCPAE 311
                +G+L +F +     S  T FCPA+
Sbjct:   259 KEQQGRLRHFNIPSHRASFGTPFCPAD 285

GO:0005576 "extracellular region" evidence=ISM

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2012728 GXMT1 "glucuronoxylan methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 83/206 (40%), Positives = 116/206 (56%)

Query:   111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNR 170
             T  E      ++  K+PCN L+FGL    L  +  N  G T+F+E+D   I  V +K   
Sbjct:    90 TFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFIEEDQAWIAIVTKKFPN 149

Query:   171 TQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLP-SSKCKLTRKDLPQEVFKHKWDVI 229
              + Y V Y    KD+ KL++  R    C   S+  P +SKC L  KD P + ++ KWD+I
Sbjct:   150 LESYHVVYDTKVKDSDKLMELGRSEE-CRSVSD--PRNSKCDLALKDFPADFYETKWDLI 206

Query:   230 VVDGPRGDMLEAPGRMSTIYTASMLARNGET--TNVVVHDVDRTIEKWFSWEFLCEENLV 287
             +VD P G   EAPGRMS IYTA +LARN E   T+V VHDV+R +E  FS  FLC+  + 
Sbjct:   207 MVDAPTGYHEEAPGRMSAIYTAGLLARNREDGETDVFVHDVNRPVEDEFSATFLCKGYMR 266

Query:   288 SSKGKLWNFRL-TDQSNSTR-FCPAE 311
                G+L +F + + ++ + R FCP E
Sbjct:   267 EQNGRLRHFTIPSHRARAGRPFCPVE 292

GO:0005739 "mitochondrion" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005976 "polysaccharide metabolic process" evidence=IDA

GO:0009808 "lignin metabolic process" evidence=IMP

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2010449 AT1G27930 "AT1G27930" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 80/220 (36%), Positives = 122/220 (55%)

Query:   100 TSTNLPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSN 159
             TS  +P  + L +    F  N++   AP N L+FGL    L  +  N  G T+FLE+D  
Sbjct:    73 TSNVVPQQN-LAEISISF--NILKKLAPANFLVFGLGRDSLMWASLNPRGKTLFLEEDLE 129

Query:   160 KINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAP-RSELLPSSKCKLTRKDLP 218
                 V + S   + + V Y+   + A  LL+  +  P C P +S L  + KCKL    LP
Sbjct:   130 WFQKVTKDSPFLRAHHVRYRTQLQQADSLLRSYKTEPKCFPAKSYLRGNEKCKLALTGLP 189

Query:   219 QEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGE---TTNVVVHDVDRTIEKW 275
              E +  +WD+++VD P+G   EAPGRM+ I++A+++ARN +    T+V +HDV+R +EK 
Sbjct:   190 DEFYDTEWDLLMVDAPKGYFAEAPGRMAAIFSAAVMARNRKKPGVTHVFLHDVNRRVEKT 249

Query:   276 FSWEFLCEENLVSSKGKLWNFRL-------TDQSNSTRFC 308
             F+ EFLC +  V++ G+LW+F +       T  S   RFC
Sbjct:   250 FAEEFLCRKYRVNAAGRLWHFAIPPAAANATIDSGDYRFC 289

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2074815 IRX15 "AT3G50220" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 85/203 (41%), Positives = 114/203 (56%)

Query:   114 EFKFLSNLITSKAP-CNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQ 172
             E K +S+++   AP CNLL+FGL  + L     N  G TVF+E++       +       
Sbjct:   109 EMKSISDVLRRCAPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEID 168

Query:   173 IYKVDYQRPAKDAYKLLKHARQNPA--CAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIV 230
             ++ V Y   A +A +L+  A++     C P   LL  S CKL   DLP  V+   WDVI 
Sbjct:   169 VFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNLL-FSDCKLGLNDLPNHVYDVDWDVIF 227

Query:   231 VDGPRGDMLEAPGRMSTIYTASMLARN--GET--TNVVVHDVDRTIEKWFSWEFLCEENL 286
             VDGPRGD  E PGRMS+I+TA++LAR+  G T  T+V VHD  R +E+    EFLC ENL
Sbjct:   228 VDGPRGDAHEGPGRMSSIFTAAVLARSKKGGTPKTHVFVHDYYRDVERLCGDEFLCRENL 287

Query:   287 VSSKGKLWNFRLTDQS-NSTRFC 308
             V S   L ++ L     NST+FC
Sbjct:   288 VESNDLLAHYVLDKMDKNSTKFC 310

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0045492 "xylan biosynthetic process" evidence=RCA;IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

TAIR|locus:2155518 IRX15-L "AT5G67210" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 83/204 (40%), Positives = 116/204 (56%)

Query:   114 EFKFLSNLITS-KAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQ 172
             E K +S+++     PCNLL+FGL  + L     N  G TVF+E++       +      +
Sbjct:   102 EMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIE 161

Query:   173 IYKVDYQRPAKDAYKLL---KHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVI 229
             ++ V Y   A++A +L+   K A +N  C P   LL  S CKL   DLP  V+   WDVI
Sbjct:   162 VFDVQYTTKAREARELVSAVKEAARNE-CRPVQNLL-FSDCKLGLNDLPNHVYDVDWDVI 219

Query:   230 VVDGPRGDMLEAPGRMSTIYTASMLARNGE----TTNVVVHDVDRTIEKWFSWEFLCEEN 285
             +VDGPRGD  + PGRMS+I+TA++LAR+ +     T+V VHD  R +E+    EFLC EN
Sbjct:   220 LVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCREN 279

Query:   286 LVSSKGKLWNFRLTDQS-NSTRFC 308
             LV S   L ++ L     NST+FC
Sbjct:   280 LVESNDLLAHYVLEKMDKNSTQFC 303


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      314       271   0.00098  114 3  11 22  0.49    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  209 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.47u 0.13s 23.60t   Elapsed:  00:00:01
  Total cpu time:  23.48u 0.13s 23.61t   Elapsed:  00:00:01
  Start:  Sat May 11 13:43:56 2013   End:  Sat May 11 13:43:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0045492 "xylan biosynthetic process" evidence=RCA;IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
TIGR01627	225	TIGR01627, A_thal_3515, uncharacterized plant-spec	2e-84
pfam04669	134	pfam04669, Polysacc_synt_4, Polysaccharide biosynt	5e-16

>gnl|CDD|130688 TIGR01627, A_thal_3515, uncharacterized plant-specific domain TIGR01627

 Score =  253 bits (647), Expect = 2e-84
 Identities = 113/204 (55%), Positives = 141/204 (69%), Gaps = 4/204 (1%)

Query: 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKS 168
           AL +KE K LS+++T ++PCN+L+FGL  QYL  S  N  G TVF+E++   I   +   
Sbjct: 22  ALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAEVNP 81

Query: 169 NRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDV 228
             T+IY V Y    ++AY LL+HAR NP C P      SS CKL  +DLPQ+V+  KWDV
Sbjct: 82  PNTRIYSVKYHTKVRNAYNLLQHARANPECRPVMNHQGSSDCKLELRDLPQQVYNTKWDV 141

Query: 229 IVVDGPRGDMLEAPGRMSTIYTASMLARNGE---TTNVVVHDVDRTIEKWFSWEFLCEEN 285
           IVVDGPRGD LE PGRMS+IYTA++LAR G    TT+V VHDV RT+EKW SWEFLC+EN
Sbjct: 142 IVVDGPRGDDLETPGRMSSIYTAAVLARKGSSGSTTDVFVHDVHRTVEKWLSWEFLCQEN 201

Query: 286 LVSSKGKLWNFRLTDQSN-STRFC 308
           LV + G LW+FR+  QSN S  FC
Sbjct: 202 LVEANGTLWHFRIKRQSNASRAFC 225

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069). Length = 225

>gnl|CDD|218202 pfam04669, Polysacc_synt_4, Polysaccharide biosynthesis

 Score = 73.1 bits (180), Expect = 5e-16
 Identities = 46/192 (23%), Positives = 65/192 (33%), Gaps = 68/192 (35%)

Query: 114 EFKFLSNLITSKAP-CNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQ 172
           E ++    +    P CNLL+FGL P  L L+  N +GI              ++     +
Sbjct: 2   EMQWAVKAVEHAEPYCNLLVFGLGPSSLRLTALN-DGI----------YEKFRKAFPELE 50

Query: 173 IYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVD 232
            Y V Y+    DA +L   A                             +K KW  I VD
Sbjct: 51  AYHVAYRTKVLDADELKSAA-----------------------------YKEKW-RIFVD 80

Query: 233 GPRGDMLEAPGRMSTIYTASMLARN------GETTNVVVHDVDRTIEKWFSWEFLCEENL 286
            P G + +        Y A  LAR+           V VH V          +FLC E  
Sbjct: 81  APEGYVED--------YNAGTLARSDASKGYTPENTVFVHRV----------QFLCIEIA 122

Query: 287 VSSKG--KLWNF 296
            + +G   L +F
Sbjct: 123 RNREGLNDLVHF 134

This family of proteins plays a role in xylan biosynthesis in plant cell walls. Its precise role in xylan biosynthesis is unknown. Its function in other organisms is unknown. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
TIGR01627	225	A_thal_3515 uncharacterized plant-specific domain	100.0
PF04669	190	Polysacc_synt_4: Polysaccharide biosynthesis; Inte	100.0
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	93.7
PLN02823	336	spermine synthase	93.55
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	92.43
PRK01581	374	speE spermidine synthase; Validated	92.35
PRK00811	283	spermidine synthase; Provisional	90.19
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	87.79
PRK04457	262	spermidine synthase; Provisional	86.91
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	84.33
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	82.84
PRK03612	521	spermidine synthase; Provisional	82.2
PLN02476	278	O-methyltransferase	82.16

>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627

Probab=100.00  E-value=1.3e-110  Score=758.84  Aligned_cols=202  Identities=56%  Similarity=1.007  Sum_probs=195.2

Q ss_pred             CCcCCHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHH
Q 021323          107 ASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAY  186 (314)
Q Consensus       107 ~~~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~  186 (314)
                      ++|||.+||+++++||++|||||||||||||||+||+||||||||||||||++||+++++++|+||+|+|+|+|+++||+
T Consensus        20 t~q~s~~Ei~~~~~VL~~raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~~~~p~leay~V~Y~t~~~~a~   99 (225)
T TIGR01627        20 PTALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAEVNPPNTRIYSVKYHTKVRNAY   99 (225)
T ss_pred             CcccCHHHHHHHHHHHHhcCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHhhcCCcceEEEEEeehhhhhHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc---CCCceE
Q 021323          187 KLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN---GETTNV  263 (314)
Q Consensus       187 ~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa---Gg~TdV  263 (314)
                      +||+++|++++|+|+|+++++|+|||||+|||+||||++|||||||||+||+|||||||+||||||||||+   |++|||
T Consensus       100 ~LL~~~~~~~~C~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAav~AR~r~~g~~TdV  179 (225)
T TIGR01627       100 NLLQHARANPECRPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSSIYTAAVLARKGSSGSTTDV  179 (225)
T ss_pred             HHHHHhccCCcccCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCcchhhHHHHHHHHHhccCCCCceE
Confidence            99999999899999998767999999999999999999999999999999999999999999999999999   457999


Q ss_pred             EEecCChhHHHHHhhhhccccccccccCceeceEecCCCC-CCCCC
Q 021323          264 VVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQSN-STRFC  308 (314)
Q Consensus       264 fVHDVdR~VEk~fs~EFLC~~nLv~~~GrLwHF~Ip~~~~-~~~FC  308 (314)
                      |||||||+|||||||||||++|||+++||||||+||+|++ +++||
T Consensus       180 fVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~~~~~~~FC  225 (225)
T TIGR01627       180 FVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNASRAFC  225 (225)
T ss_pred             EEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCCcCCCCCCC
Confidence            9999999999999999999999999999999999999955 56699

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).

>PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins

Probab=100.00  E-value=9.4e-85  Score=579.90  Aligned_cols=182  Identities=48%  Similarity=0.870  Sum_probs=104.2

Q ss_pred             HHHHHHHHHhhccCC-ccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHHHHHH
Q 021323          113 KEFKFLSNLITSKAP-CNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKH  191 (314)
Q Consensus       113 ~Ei~~~~~VL~~raP-CNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~  191 (314)
                      .||+.+++||++++| |||||||||||+|||+++||||||||||||++|+++++++||++++|+|+|+|++.++++||..
T Consensus         1 ~E~~~a~~~l~~~~p~cNlLvfgl~~~sl~wt~ln~~GrTvFlee~~~~~~~~~~~fP~l~~~~v~y~t~~~~a~~Ll~~   80 (190)
T PF04669_consen    1 IEIAWAAKVLQHREPYCNLLVFGLGPDSLLWTSLNDGGRTVFLEEDPAWYSSFRKRFPDLEAYHVRYRTKVIDADELLSK   80 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS--TTS--SSTTHHH-----------HHHHHHHH-TTT----SHHHHHB--STTTSSH
T ss_pred             CcHHHHHHHHHHhCCCceEEEEeCCCccccchhcCcCcccchhhHHHHHHHHHHHHCcCCcccCcccccccCCHHHHhCc
Confidence            599999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc---CC--CceEEEe
Q 021323          192 ARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN---GE--TTNVVVH  266 (314)
Q Consensus       192 ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa---Gg--~TdVfVH  266 (314)
                      +|+ ++|+|+++. ++|+|||||+|||++||+++|||||||||+||+|+|||||+||||||||||+   |+  +||||||
T Consensus        81 ~~~-~~C~~~~~~-~~s~C~lal~~LP~~vy~~~WDvi~vd~p~g~~~daPGRM~aIytag~LaR~~~~~~~t~t~VfVh  158 (190)
T PF04669_consen   81 ARS-PECRPVQNL-RFSECKLALNDLPNEVYKEKWDVIFVDAPRGYVPDAPGRMAAIYTAGVLARARASGGYTETDVFVH  158 (190)
T ss_dssp             H-----------------------------HHHHH-HHHHHHHTTT-S---------TTS-EEEESBTTS-S-TTEEEE-
T ss_pred             ccc-ccccccccc-cccccccccccccchhhhhhHHHHHHHcCCCCCCccchhhhhhccHHHHhhccCCCCCCCCEEEEE
Confidence            998 999999886 9999999999999999999999999999999999999999999999999999   34  3699999


Q ss_pred             cCChhHHHHHhhhhccccccccccCc--eece
Q 021323          267 DVDRTIEKWFSWEFLCEENLVSSKGK--LWNF  296 (314)
Q Consensus       267 DVdR~VEk~fs~EFLC~~nLv~~~Gr--LwHF  296 (314)
                      ||||+|||+||+||||+||+++++|+  ||||
T Consensus       159 dv~R~vE~~~s~eFLc~e~l~~~~G~~~l~hF  190 (190)
T PF04669_consen  159 DVDRPVEKWFSEEFLCIEILRNREGRNDLWHF  190 (190)
T ss_dssp             HH----------HHHHHHHHHHHTTTTGGG--
T ss_pred             cccccccchhHHHHHHHHHHHhCCCchhhccC
Confidence            99999999999999999999999999  9999

; PDB: 2JYN_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=93.70  E-value=0.35  Score=46.20  Aligned_cols=154  Identities=18%  Similarity=0.237  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCce--eEEEeeccchhhHHHH
Q 021323          113 KEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQ--IYKVDYQRPAKDAYKL  188 (314)
Q Consensus       113 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~le--ay~V~Y~T~~~ea~~L  188 (314)
                      -|.-+....+.+..|=+.||-|+|-...++..+-|.  -+-+.+|=|+..|+-.++-+|...  +++=+-.-.+.|+.+.
T Consensus        63 hEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~  142 (282)
T COG0421          63 HEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF  142 (282)
T ss_pred             HHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence            345555566677777799999999999999999998  889999999999999998888754  3322223344667666


Q ss_pred             HHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHh---hhc----C---
Q 021323          189 LKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASML---ARN----G---  258 (314)
Q Consensus       189 L~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavl---ARa----G---  258 (314)
                      ++.      |.                        .++|||++|.--   |+.||  .+.||.-..   .|.    |   
T Consensus       143 v~~------~~------------------------~~fDvIi~D~td---p~gp~--~~Lft~eFy~~~~~~L~~~Gi~v  187 (282)
T COG0421         143 LRD------CE------------------------EKFDVIIVDSTD---PVGPA--EALFTEEFYEGCRRALKEDGIFV  187 (282)
T ss_pred             HHh------CC------------------------CcCCEEEEcCCC---CCCcc--cccCCHHHHHHHHHhcCCCcEEE
Confidence            631      11                        168999999766   44443  455665432   232    3   


Q ss_pred             -CCceEEEe-----cCChhHHHHHhhhhccccccccccCceeceEecCC
Q 021323          259 -ETTNVVVH-----DVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQ  301 (314)
Q Consensus       259 -g~TdVfVH-----DVdR~VEk~fs~EFLC~~nLv~~~GrLwHF~Ip~~  301 (314)
                       ..-+-|.|     +..|.++++|+..=..--.+-.-.+..|-|.+.+.
T Consensus       188 ~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~  236 (282)
T COG0421         188 AQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASF  236 (282)
T ss_pred             EecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeec
Confidence             22235666     58899999999887777777777788999999873

>PLN02823 spermine synthase

Probab=93.55  E-value=0.41  Score=46.59  Aligned_cols=103  Identities=17%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             HHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCce-eE-EEeeccchhhHHHHHHHHhcC
Q 021323          120 NLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQ-IY-KVDYQRPAKDAYKLLKHARQN  195 (314)
Q Consensus       120 ~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~le-ay-~V~Y~T~~~ea~~LL~~ar~~  195 (314)
                      -.+....|-+.||.|+|-..+....+-|.  .+-+.+|=|+.-++-+++-+|... ++ +=+-+-...||.+.|+..   
T Consensus        97 ~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~---  173 (336)
T PLN02823         97 ALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR---  173 (336)
T ss_pred             HHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC---
Confidence            44455689999999999887776666664  567999999999999988766421 11 111222345666666310   


Q ss_pred             CCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhh
Q 021323          196 PACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLA  255 (314)
Q Consensus       196 ~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlA  255 (314)
                                                 +-+||||++|.+.   |...|-....||.-.+.
T Consensus       174 ---------------------------~~~yDvIi~D~~d---p~~~~~~~~Lyt~eF~~  203 (336)
T PLN02823        174 ---------------------------DEKFDVIIGDLAD---PVEGGPCYQLYTKSFYE  203 (336)
T ss_pred             ---------------------------CCCccEEEecCCC---ccccCcchhhccHHHHH
Confidence                                       1159999999865   33333335578866543

>TIGR00417 speE spermidine synthase

Probab=92.43  E-value=0.94  Score=41.71  Aligned_cols=52  Identities=15%  Similarity=0.121  Sum_probs=40.5

Q ss_pred             HHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCc
Q 021323          120 NLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRT  171 (314)
Q Consensus       120 ~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~l  171 (314)
                      ..+....|=+.|+.|.|-..+....+.++  .+.+.+|-|+.-++.+++..+.+
T Consensus        66 ~l~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~  119 (270)
T TIGR00417        66 PLFTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL  119 (270)
T ss_pred             HhhcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence            34455667799999999888777777775  57889999999999888766543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01581 speE spermidine synthase; Validated

Probab=92.35  E-value=1  Score=45.19  Aligned_cols=146  Identities=20%  Similarity=0.201  Sum_probs=87.5

Q ss_pred             HhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCce-----eE-EEeeccchhhHHHHHHHH
Q 021323          121 LITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQ-----IY-KVDYQRPAKDAYKLLKHA  192 (314)
Q Consensus       121 VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~le-----ay-~V~Y~T~~~ea~~LL~~a  192 (314)
                      .+....|=+.||.|.|-...+-..+-|.  ++-+-+|=|+.-++-+++ +|.+.     ++ +=+-+-.+.||.+.|+..
T Consensus       145 m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~  223 (374)
T PRK01581        145 MSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-VPELVSLNKSAFFDNRVNVHVCDAKEFLSSP  223 (374)
T ss_pred             HHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-ccccchhccccCCCCceEEEECcHHHHHHhc
Confidence            3445778899999999777665566554  688889999999988885 44332     11 111122335566555310


Q ss_pred             hcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc------CCCc-----
Q 021323          193 RQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN------GETT-----  261 (314)
Q Consensus       193 r~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa------Gg~T-----  261 (314)
                                                    +-++|||++|.|....+    .....||...+...      ||.-     
T Consensus       224 ------------------------------~~~YDVIIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        224 ------------------------------SSLYDVIIIDFPDPATE----LLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             ------------------------------CCCccEEEEcCCCcccc----chhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence                                          01699999998753322    24778877655443      4420     


Q ss_pred             -eEEEecCChhHHHHHhhhhcccccccc---ccCceeceEecCC
Q 021323          262 -NVVVHDVDRTIEKWFSWEFLCEENLVS---SKGKLWNFRLTDQ  301 (314)
Q Consensus       262 -dVfVHDVdR~VEk~fs~EFLC~~nLv~---~~GrLwHF~Ip~~  301 (314)
                       -.+-.++-..+-+++...|+--.....   +-|-+|=|.|.+.
T Consensus       270 sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~  313 (374)
T PRK01581        270 SPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAAN  313 (374)
T ss_pred             ChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeC
Confidence             011122223356667777775554333   3377899999875

>PRK00811 spermidine synthase; Provisional

Probab=90.19  E-value=1  Score=42.02  Aligned_cols=52  Identities=13%  Similarity=0.099  Sum_probs=41.9

Q ss_pred             HHhhccCCccEEEeccCchhhhhhhcCC-C-CcEEEecCChhhHHHhhhcCCCc
Q 021323          120 NLITSKAPCNLLIFGLDPQYLELSKANA-E-GITVFLEDDSNKINAVKRKSNRT  171 (314)
Q Consensus       120 ~VL~~raPCNfLVFGLg~dslmWaalN~-g-GrTVFLEEd~~~i~~~~~~~p~l  171 (314)
                      -.+....|-++||.|.|-....-..+.+ + .+-+.+|=|+.-++.+++.++.+
T Consensus        70 ~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~  123 (283)
T PRK00811         70 PLFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEI  123 (283)
T ss_pred             HHhhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh
Confidence            3455578999999999998888777777 3 47799999999999988876643

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=87.79  E-value=1.2  Score=41.16  Aligned_cols=156  Identities=18%  Similarity=0.197  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCceeE--EEeeccchhhHHHH
Q 021323          113 KEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQIY--KVDYQRPAKDAYKL  188 (314)
Q Consensus       113 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~leay--~V~Y~T~~~ea~~L  188 (314)
                      .|.-+-.-++....|=|.||.|+|-...+-..+.|.  .+...+|-|+.-++-+++-+|....-  +=+.+-...||.+.
T Consensus        63 ~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~  142 (246)
T PF01564_consen   63 HEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF  142 (246)
T ss_dssp             HHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH
T ss_pred             HHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH
Confidence            444444556666789999999999888888888876  67889999999988887755542211  11112234566666


Q ss_pred             HHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc------CCCce
Q 021323          189 LKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN------GETTN  262 (314)
Q Consensus       189 L~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa------Gg~Td  262 (314)
                      |+...                         ++    .+|||++|.+.   |..|+-.  .||.-.....      ||.--
T Consensus       143 l~~~~-------------------------~~----~yDvIi~D~~d---p~~~~~~--l~t~ef~~~~~~~L~~~Gv~v  188 (246)
T PF01564_consen  143 LKETQ-------------------------EE----KYDVIIVDLTD---PDGPAPN--LFTREFYQLCKRRLKPDGVLV  188 (246)
T ss_dssp             HHTSS-------------------------ST-----EEEEEEESSS---TTSCGGG--GSSHHHHHHHHHHEEEEEEEE
T ss_pred             HHhcc-------------------------CC----cccEEEEeCCC---CCCCccc--ccCHHHHHHHHhhcCCCcEEE
Confidence            64211                         11    79999999987   4444333  6776544332      33211


Q ss_pred             EEE-----e-cCChhHHHHHhhhhc-cccccc--ccc-CceeceEecCCC
Q 021323          263 VVV-----H-DVDRTIEKWFSWEFL-CEENLV--SSK-GKLWNFRLTDQS  302 (314)
Q Consensus       263 VfV-----H-DVdR~VEk~fs~EFL-C~~nLv--~~~-GrLwHF~Ip~~~  302 (314)
                      +-.     | +.-+.+.+.+...|- |.-+.+  -.- +..|-|.+.+..
T Consensus       189 ~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~  238 (246)
T PF01564_consen  189 LQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASKD  238 (246)
T ss_dssp             EEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEESS
T ss_pred             EEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeCC
Confidence            111     1 122345555555554 222222  222 445788877653

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK04457 spermidine synthase; Provisional

Probab=86.91  E-value=8.4  Score=35.75  Aligned_cols=46  Identities=15%  Similarity=0.176  Sum_probs=37.3

Q ss_pred             ccCCccEEEeccCchhhh--hhhcCCCCcEEEecCChhhHHHhhhcCC
Q 021323          124 SKAPCNLLIFGLDPQYLE--LSKANAEGITVFLEDDSNKINAVKRKSN  169 (314)
Q Consensus       124 ~raPCNfLVFGLg~dslm--WaalN~gGrTVFLEEd~~~i~~~~~~~p  169 (314)
                      ...|=++|+.|+|-.++.  |+...++++-+-+|=|+.-++.+++.+.
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~  111 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE  111 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC
Confidence            456889999999977754  6666778888999999999998887653

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=84.33  E-value=4.1  Score=37.11  Aligned_cols=98  Identities=20%  Similarity=0.170  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHhhccCCccEEEecc--Cchhhhhhh-cCCCCcEEEecCChhhHHHhhhcC--CCceeEEEeeccchhhH
Q 021323          111 TKKEFKFLSNLITSKAPCNLLIFGL--DPQYLELSK-ANAEGITVFLEDDSNKINAVKRKS--NRTQIYKVDYQRPAKDA  185 (314)
Q Consensus       111 t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmWaa-lN~gGrTVFLEEd~~~i~~~~~~~--p~leay~V~Y~T~~~ea  185 (314)
                      +.++-+.+..+++...|=++|-.|-  |..++.+++ +..+|+-+.+|-|+++++.+++..  .+++ ..|  +-...+|
T Consensus        53 ~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i--~~~~gda  129 (234)
T PLN02781         53 PVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKI--NFIQSDA  129 (234)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcE--EEEEccH
Confidence            4455555555555567889999985  454455554 345799999999999998887643  2332 223  2345677


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCC
Q 021323          186 YKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRG  236 (314)
Q Consensus       186 ~~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~G  236 (314)
                      .+.|..+..++.                         +-.+|+|.+|+.++
T Consensus       130 ~~~L~~l~~~~~-------------------------~~~fD~VfiDa~k~  155 (234)
T PLN02781        130 LSALDQLLNNDP-------------------------KPEFDFAFVDADKP  155 (234)
T ss_pred             HHHHHHHHhCCC-------------------------CCCCCEEEECCCHH
Confidence            777765543211                         12689999999873

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=82.84  E-value=5.6  Score=36.09  Aligned_cols=101  Identities=16%  Similarity=0.251  Sum_probs=67.3

Q ss_pred             CHHHHHHHHHHhhccCCccEEEecc--Cchhhhhh-hcCCCCcEEEecCChhhHHHhhhcC--CCceeEEEeeccchhhH
Q 021323          111 TKKEFKFLSNLITSKAPCNLLIFGL--DPQYLELS-KANAEGITVFLEDDSNKINAVKRKS--NRTQIYKVDYQRPAKDA  185 (314)
Q Consensus       111 t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmWa-alN~gGrTVFLEEd~~~i~~~~~~~--p~leay~V~Y~T~~~ea  185 (314)
                      +.++-+.+..+++..-|-|.|-+|-  |.-++.|+ ++-.+|+-+=+|-|+++++.+++..  -+++ .+|++  ...+|
T Consensus        30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~--~~gda  106 (205)
T PF01596_consen   30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEV--IEGDA  106 (205)
T ss_dssp             HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEE--EES-H
T ss_pred             CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEE--EEecc
Confidence            4456666666666688999999976  56666666 4556899999999999988877522  2332 23433  34778


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCC
Q 021323          186 YKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDML  239 (314)
Q Consensus       186 ~~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~p  239 (314)
                      .+.|..+..+..                         +-.+|+|.|||.++-++
T Consensus       107 ~~~l~~l~~~~~-------------------------~~~fD~VFiDa~K~~y~  135 (205)
T PF01596_consen  107 LEVLPELANDGE-------------------------EGQFDFVFIDADKRNYL  135 (205)
T ss_dssp             HHHHHHHHHTTT-------------------------TTSEEEEEEESTGGGHH
T ss_pred             HhhHHHHHhccC-------------------------CCceeEEEEcccccchh
Confidence            888876553210                         23689999999886443

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK03612 spermidine synthase; Provisional

Probab=82.20  E-value=7.7  Score=39.61  Aligned_cols=44  Identities=11%  Similarity=0.101  Sum_probs=36.7

Q ss_pred             hccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhh
Q 021323          123 TSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKR  166 (314)
Q Consensus       123 ~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~  166 (314)
                      ..+.|-+.|+.|.|-....-..+.|+  .+-+.+|=|++-++.+++
T Consensus       294 ~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~  339 (521)
T PRK03612        294 ASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELART  339 (521)
T ss_pred             hCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHh
Confidence            34678999999999887776666765  589999999999999887

>PLN02476 O-methyltransferase

Probab=82.16  E-value=9  Score=36.80  Aligned_cols=101  Identities=21%  Similarity=0.146  Sum_probs=66.4

Q ss_pred             cCCHHHHHHHHHHhhccCCccEEEeccCch-hhhhhh--cCCCCcEEEecCChhhHHHhhhcC--CCceeEEEeeccchh
Q 021323          109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQ-YLELSK--ANAEGITVFLEDDSNKINAVKRKS--NRTQIYKVDYQRPAK  183 (314)
Q Consensus       109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~d-slmWaa--lN~gGrTVFLEEd~~~i~~~~~~~--p~leay~V~Y~T~~~  183 (314)
                      ..+.++-+.+..+++...|=++|=.|-+-. |.+|.|  ++.+|+-+=+|-|+++++.+++..  -+++ +.|..  ...
T Consensus       101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~l--i~G  177 (278)
T PLN02476        101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNV--KHG  177 (278)
T ss_pred             ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEE--EEc
Confidence            346666666777777778889999976532 344554  356899999999999988777633  3443 33433  246


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCC
Q 021323          184 DAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGD  237 (314)
Q Consensus       184 ea~~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy  237 (314)
                      +|.+.|..+..+.                         .+-.+|+|.|||+++-
T Consensus       178 dA~e~L~~l~~~~-------------------------~~~~FD~VFIDa~K~~  206 (278)
T PLN02476        178 LAAESLKSMIQNG-------------------------EGSSYDFAFVDADKRM  206 (278)
T ss_pred             CHHHHHHHHHhcc-------------------------cCCCCCEEEECCCHHH
Confidence            7777776553210                         0134899999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 57/260 (21%), Positives = 82/260 (31%), Gaps = 65/260 (25%)

Query: 36  MKIPGKKMIILLVFIITSLSILRL-------LKLAITTSPSPPSSTLLSTLQNICSSTSP 88
           +   GK  + L V    S  +          L L    SP     T+L  LQ +     P
Sbjct: 158 VLGSGKTWVALDV--CLSYKVQCKMDFKIFWLNLKNCNSPE----TVLEMLQKLLYQIDP 211

Query: 89  SCSNTPSYSPGTSTNLPNASALTKKEFKFLSNLITSKAPCN-LLIFGLDPQYLELSKANA 147
           + ++   +S      + +  A        L  L+ SK   N LL+  L      +   NA
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQA-------ELRRLLKSKPYENCLLV--LL----NVQ--NA 256

Query: 148 EGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPS 207
           +    F  + S KI    R    T     D+   A   +  L H            LL  
Sbjct: 257 KAWNAF--NLSCKILLTTRFKQVT-----DFLSAATTTHISLDHHSMTLTPDEVKSLL-- 307

Query: 208 SKC-KLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETT----- 261
            K      +DLP+EV                    P R+S I  A  + R+G  T     
Sbjct: 308 LKYLDCRPQDLPREVLTT----------------NPRRLSII--AESI-RDGLATWDNWK 348

Query: 262 NVVVHDVDRTIEKWFSWEFL 281
           +V    +   IE   S   L
Sbjct: 349 HVNCDKLTTIIES--SLNVL 366

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 43/289 (14%), Positives = 88/289 (30%), Gaps = 80/289 (27%)

Query: 8   PRPLLTPLVHFSAPVSPVNNKYFRGNKKMKIPGKKMIILLVFIITSLSILRLLKLAITTS 67
           P  +L  L      + P  N   R +    I      + +  I   L   RLLK     S
Sbjct: 195 PETVLEMLQKLLYQIDP--NWTSRSDHSSNIK-----LRIHSIQAELR--RLLK-----S 240

Query: 68  PSPPSSTLLSTLQNICSS--------------TSPSCSNTPSYSPGTSTNLP---NASAL 110
               +  LL  L N+ ++              T+     T   S  T+T++    ++  L
Sbjct: 241 KPYENC-LL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 111 TKKE----F-KFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVK 165
           T  E      K+L +      P    +   +P+ L +       I   + D     +  K
Sbjct: 299 TPDEVKSLLLKYL-DCRPQDLP--REVLTTNPRRLSI-------IAESIRDGLATWDNWK 348

Query: 166 R----KSNRTQIYKVDYQRPA--KDAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQ 219
                K        ++   PA  +  +  L              + P S        +P 
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRL-------------SVFPPSA------HIPT 389

Query: 220 EVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDV 268
            +    W  ++       +      ++ ++  S++ +  + + + +  +
Sbjct: 390 ILLSLIWFDVIKSDVM-VV------VNKLHKYSLVEKQPKESTISIPSI 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.46
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	91.67
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	91.06
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	84.78
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	83.18

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.46  E-value=0.004  Score=54.86  Aligned_cols=165  Identities=17%  Similarity=0.118  Sum_probs=94.7

Q ss_pred             CCcCCHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCC--Cc-eeEEEeeccchh
Q 021323          107 ASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSN--RT-QIYKVDYQRPAK  183 (314)
Q Consensus       107 ~~~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p--~l-eay~V~Y~T~~~  183 (314)
                      ...++.++.+.+...++  .+=|.|-+|-|. |.+|.|...+|+-+=+|-|++|++.+++..-  ++ +...|.+..  .
T Consensus        13 ~~~v~~~~~~~L~~~l~--~a~~VLEiGtGy-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~--g   87 (202)
T 3cvo_A           13 ELTMPPAEAEALRMAYE--EAEVILEYGSGG-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW--T   87 (202)
T ss_dssp             CCCSCHHHHHHHHHHHH--HCSEEEEESCSH-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE--C
T ss_pred             CccCCHHHHHHHHHHhh--CCCEEEEECchH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE--e
Confidence            35789999999987554  577999999996 6666665558999999999999998886332  11 122333331  1


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhc----cCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhcCC
Q 021323          184 DAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFK----HKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGE  259 (314)
Q Consensus       184 ea~~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe----~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARaGg  259 (314)
                      +|.+.+      .-..|....   .  .-.+..++.++.+    -..|+|+|||..+        ....+-+--+-|-||
T Consensus        88 da~~~~------~wg~p~~~~---~--~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~~l~~l~~GG  148 (202)
T 3cvo_A           88 DIGPTG------DWGHPVSDA---K--WRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALATAFSITRPV  148 (202)
T ss_dssp             CCSSBC------GGGCBSSST---T--GGGTTHHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHHHHHHCSSCE
T ss_pred             Cchhhh------cccccccch---h--hhhHHHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHHHHHhcCCCe
Confidence            110000      012221110   0  0112222222222    4599999999652        233444333334454


Q ss_pred             CceEEEecC-ChhHHHHHhhhhccccccccccCceeceEecCC
Q 021323          260 TTNVVVHDV-DRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQ  301 (314)
Q Consensus       260 ~TdVfVHDV-dR~VEk~fs~EFLC~~nLv~~~GrLwHF~Ip~~  301 (314)
                        =|+++|| .|.-+.. ..+||   .+++..||+-.|+|.+.
T Consensus       149 --~Iv~DNv~~r~~y~~-v~~~~---~~~~~~~~~a~f~~~p~  185 (202)
T 3cvo_A          149 --TLLFDDYSQRRWQHQ-VEEFL---GAPLMIGRLAAFQVEPQ  185 (202)
T ss_dssp             --EEEETTGGGCSSGGG-GHHHH---CCCEEETTEEEEEECCC
T ss_pred             --EEEEeCCcCCcchHH-HHHHH---hHHhhcCceEEEEeCCC
Confidence              3577885 5532221 13343   35678899999999765

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=91.67  E-value=0.16  Score=49.08  Aligned_cols=150  Identities=17%  Similarity=0.149  Sum_probs=91.3

Q ss_pred             cCCccEEEeccCchhhhhhhcCCC-CcEEEecCChhhHHHhhhcCCCcee--EE----EeeccchhhHHHHHHHHhcCCC
Q 021323          125 KAPCNLLIFGLDPQYLELSKANAE-GITVFLEDDSNKINAVKRKSNRTQI--YK----VDYQRPAKDAYKLLKHARQNPA  197 (314)
Q Consensus       125 raPCNfLVFGLg~dslmWaalN~g-GrTVFLEEd~~~i~~~~~~~p~lea--y~----V~Y~T~~~ea~~LL~~ar~~~~  197 (314)
                      ..|=|.||.|+|-...+-..+.|. .+..-+|=|+.-|+-.++-+|.+..  ++    =+.+--+.||.+-|+.+.++  
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~--  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE--  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH--
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc--
Confidence            346799999999888888777765 5677899999999998887775422  11    11233356788888655431  


Q ss_pred             CCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcc-hhhhhhhHhh---hc---CCC-----ceEEE
Q 021323          198 CAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRM-STIYTASMLA---RN---GET-----TNVVV  265 (314)
Q Consensus       198 C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM-~AIyTAavlA---Ra---Gg~-----TdVfV  265 (314)
                                               ..++|||++|.+.+.....|-.. ...||...+.   |.   ||.     .-++.
T Consensus       282 -------------------------~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~  336 (381)
T 3c6k_A          282 -------------------------GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL  336 (381)
T ss_dssp             -------------------------TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC
T ss_pred             -------------------------cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcc
Confidence                                     12599999998876555555444 4567765432   22   321     12234


Q ss_pred             ecCChhHHHHHhhhhcccc---cc--ccccCceeceEecCC
Q 021323          266 HDVDRTIEKWFSWEFLCEE---NL--VSSKGKLWNFRLTDQ  301 (314)
Q Consensus       266 HDVdR~VEk~fs~EFLC~~---nL--v~~~GrLwHF~Ip~~  301 (314)
                      |+..+.+++.+.+.|---+   +.  |-+-+..|=|.+.+.
T Consensus       337 ~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK  377 (381)
T 3c6k_A          337 TEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWK  377 (381)
T ss_dssp             HHHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred             hhHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEEC
Confidence            6666777888777652111   11  223345788887664

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=84.78  E-value=1.2  Score=41.53  Aligned_cols=80  Identities=15%  Similarity=0.075  Sum_probs=53.4

Q ss_pred             CccEEEeccCchhhhhhhc--CCCCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHHHHHHHhcCCCCCCCCCC
Q 021323          127 PCNLLIFGLDPQYLELSKA--NAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSEL  204 (314)
Q Consensus       127 PCNfLVFGLg~dslmWaal--N~gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~ar~~~~C~p~~~~  204 (314)
                      |.++|+.|.|-.++.-..+  .++.+.+-+|=|+.-++.+++.++....-.|+  -...|+.+.++.             
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~--v~~~Da~~~l~~-------------  154 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVK--IRVDDARMVAES-------------  154 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEE--EEESCHHHHHHT-------------
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceE--EEECcHHHHHhh-------------
Confidence            5599999999776654444  45778889999999999999887642111111  123555555531             


Q ss_pred             CCCccccccccCCchhhhccCccEEEEeCCCCC
Q 021323          205 LPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGD  237 (314)
Q Consensus       205 l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy  237 (314)
                                  ++    +-.+|+|++|+..++
T Consensus       155 ------------~~----~~~fDvIi~D~~~~~  171 (317)
T 3gjy_A          155 ------------FT----PASRDVIIRDVFAGA  171 (317)
T ss_dssp             ------------CC----TTCEEEEEECCSTTS
T ss_pred             ------------cc----CCCCCEEEECCCCcc
Confidence                        11    236899999987765

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=83.18  E-value=2.9  Score=38.85  Aligned_cols=57  Identities=12%  Similarity=0.085  Sum_probs=43.9

Q ss_pred             HHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCC
Q 021323          114 EFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNR  170 (314)
Q Consensus       114 Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~  170 (314)
                      |.-+-.-++....|=|.||.|+|-...+-..+.|-  -+...+|=|+.-|+-.++-+|.
T Consensus        71 E~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~  129 (294)
T 3o4f_A           71 EMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPN  129 (294)
T ss_dssp             HHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             HHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcc
Confidence            33333445566889999999999998888888774  4678899999999888776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	91.88
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	89.23
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	89.07
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	88.27
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	86.6
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	86.12
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	81.63
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	80.2

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.88  E-value=0.21  Score=43.07  Aligned_cols=50  Identities=14%  Similarity=0.114  Sum_probs=40.3

Q ss_pred             HHHhhccCCccEEEeccCchhhhhhhcCCCC-cEEEecCChhhHHHhhhcC
Q 021323          119 SNLITSKAPCNLLIFGLDPQYLELSKANAEG-ITVFLEDDSNKINAVKRKS  168 (314)
Q Consensus       119 ~~VL~~raPCNfLVFGLg~dslmWaalN~gG-rTVFLEEd~~~i~~~~~~~  168 (314)
                      .-.+....|-|.||.|+|-...++..+.|+. +...+|=|+.-|+-+++-+
T Consensus        65 ~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f  115 (276)
T d1mjfa_          65 PAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI  115 (276)
T ss_dssp             HHHHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred             chhhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhh
Confidence            3345678899999999999999998888764 5667899999998877644

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=89.23  E-value=0.98  Score=39.51  Aligned_cols=151  Identities=16%  Similarity=0.202  Sum_probs=87.4

Q ss_pred             HHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCceeE---EEeeccchhhHHHHHHHHh
Q 021323          119 SNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQIY---KVDYQRPAKDAYKLLKHAR  193 (314)
Q Consensus       119 ~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~leay---~V~Y~T~~~ea~~LL~~ar  193 (314)
                      .-.+....|=|.||.|+|-...+...+.+.  .+-.-+|=|+.-|+-+++-+|.....   +=+-+--..||.+.|+.. 
T Consensus        70 ~~l~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~-  148 (312)
T d1uira_          70 PAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-  148 (312)
T ss_dssp             HHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-
T ss_pred             hhhhhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc-
Confidence            345566889999999999988888777764  57788999999998877655331100   000011145666666421 


Q ss_pred             cCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhH---hhhc---CCC--ceE--
Q 021323          194 QNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASM---LARN---GET--TNV--  263 (314)
Q Consensus       194 ~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAav---lARa---Gg~--TdV--  263 (314)
                                                   +.+||||++|.+.-+..+.|.  ...||--.   ++|.   ||.  +.+  
T Consensus       149 -----------------------------~~~yDvIi~D~~dp~~~~~~~--~~L~t~eF~~~~~~~L~p~Gvlv~~~~s  197 (312)
T d1uira_         149 -----------------------------EERYDVVIIDLTDPVGEDNPA--RLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (312)
T ss_dssp             -----------------------------CCCEEEEEEECCCCBSTTCGG--GGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             -----------------------------CCcccEEEEeCCCcccccchh--hhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence                                         346999999997644444332  22555432   3333   331  111  


Q ss_pred             EE---ecCChhHHHHHhhhhcccccc---ccccCceeceEecCC
Q 021323          264 VV---HDVDRTIEKWFSWEFLCEENL---VSSKGKLWNFRLTDQ  301 (314)
Q Consensus       264 fV---HDVdR~VEk~fs~EFLC~~nL---v~~~GrLwHF~Ip~~  301 (314)
                      ..   .++.+.+.+.+...|--=...   |-+-|.-|.|.+.+.
T Consensus       198 ~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w~f~~aS~  241 (312)
T d1uira_         198 ILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASD  241 (312)
T ss_dssp             ECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEES
T ss_pred             cccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCCEeEEEeC
Confidence            11   123455667777777321111   223355689999775

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=89.07  E-value=0.29  Score=38.80  Aligned_cols=98  Identities=14%  Similarity=0.060  Sum_probs=66.6

Q ss_pred             CCHHHHHHHHHHhhc--cCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHH
Q 021323          110 LTKKEFKFLSNLITS--KAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYK  187 (314)
Q Consensus       110 ~t~~Ei~~~~~VL~~--raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~  187 (314)
                      .+..--..+++.|+.  ...+++|=.|=|...+-..++..|.+-+|+|-|+.-++.+++..   +.+.+.-+....+++.
T Consensus        23 t~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~---~~~~~~~~v~~~~~d~   99 (171)
T d1ws6a1          23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENV---RRTGLGARVVALPVEV   99 (171)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHH---HHHTCCCEEECSCHHH
T ss_pred             CcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHH---Hhhccccceeeeehhc
Confidence            355556688888886  45778887777777777778888999999999999998887642   2222333334456666


Q ss_pred             HHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCC
Q 021323          188 LLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGD  237 (314)
Q Consensus       188 LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy  237 (314)
                      .+...+.                           -...||+|++|-|=|+
T Consensus       100 ~~~~~~~---------------------------~~~~fD~If~DPPY~~  122 (171)
T d1ws6a1         100 FLPEAKA---------------------------QGERFTVAFMAPPYAM  122 (171)
T ss_dssp             HHHHHHH---------------------------TTCCEEEEEECCCTTS
T ss_pred             ccccccc---------------------------cCCccceeEEcccccc
Confidence            5532221                           1125999999988443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.27  E-value=0.52  Score=41.96  Aligned_cols=98  Identities=18%  Similarity=0.155  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCceeE--EEeeccchhhHH
Q 021323          111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQIY--KVDYQRPAKDAY  186 (314)
Q Consensus       111 t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~leay--~V~Y~T~~~ea~  186 (314)
                      ...|.-+-.-.+....|=|.||.|+|-...+...+.|.  .+...+|=|+.-|+-.++-+|....-  +=+.+-...||.
T Consensus        91 ~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~  170 (312)
T d2b2ca1          91 SYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF  170 (312)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH
T ss_pred             HHHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHH
Confidence            34566555566778899999999999999999999876  68999999999999888766543210  011112245666


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCC
Q 021323          187 KLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDM  238 (314)
Q Consensus       187 ~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~  238 (314)
                      +-|+..                              +.+||||++|.+.+..
T Consensus       171 ~~l~~~------------------------------~~~yDvII~D~~dp~~  192 (312)
T d2b2ca1         171 EFLKNH------------------------------KNEFDVIITDSSDPVG  192 (312)
T ss_dssp             HHHHHC------------------------------TTCEEEEEECCC----
T ss_pred             HHHHhC------------------------------CCCCCEEEEcCCCCCC
Confidence            666311                              2358999999987543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.60  E-value=0.39  Score=41.82  Aligned_cols=151  Identities=19%  Similarity=0.152  Sum_probs=91.7

Q ss_pred             HHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCcee--EEEeeccchhhHHHHH
Q 021323          114 EFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQI--YKVDYQRPAKDAYKLL  189 (314)
Q Consensus       114 Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~lea--y~V~Y~T~~~ea~~LL  189 (314)
                      |.-+-.-.+....|=|.||.|+|-...+...+-|.  .+.+.+|=|+.-|+-.++-+|....  -+-+.+.-..||.+-+
T Consensus        68 e~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l  147 (290)
T d1xj5a_          68 EMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFL  147 (290)
T ss_dssp             HHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHH
T ss_pred             HHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHH
Confidence            43333344556789999999999999998888875  4789999999999888876543211  0111122234555544


Q ss_pred             HHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhH---hhhc---CCCceE
Q 021323          190 KHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASM---LARN---GETTNV  263 (314)
Q Consensus       190 ~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAav---lARa---Gg~TdV  263 (314)
                      +                         +.+    +..+|||++|.+.++.   |.  ...||--.   +.|.   ||   |
T Consensus       148 ~-------------------------~~~----~~~yDvIi~D~~dp~~---~~--~~L~t~eF~~~~~~~L~~~G---i  190 (290)
T d1xj5a_         148 K-------------------------NAA----EGSYDAVIVDSSDPIG---PA--KELFEKPFFQSVARALRPGG---V  190 (290)
T ss_dssp             H-------------------------TSC----TTCEEEEEECCCCTTS---GG--GGGGSHHHHHHHHHHEEEEE---E
T ss_pred             h-------------------------hcc----ccCccEEEEcCCCCCC---cc--hhhCCHHHHHHHHHhcCCCc---E
Confidence            2                         111    1269999999998553   22  46777543   3333   32   2


Q ss_pred             EE---------ecCChhHHHHHhhhhc-ccccccccc----CceeceEecCC
Q 021323          264 VV---------HDVDRTIEKWFSWEFL-CEENLVSSK----GKLWNFRLTDQ  301 (314)
Q Consensus       264 fV---------HDVdR~VEk~fs~EFL-C~~nLv~~~----GrLwHF~Ip~~  301 (314)
                      ||         .+.-+.+-+.+.+.|- ...|....+    +-.|=|.+.+.
T Consensus       191 ~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as~  242 (290)
T d1xj5a_         191 VCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCST  242 (290)
T ss_dssp             EEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEEC
T ss_pred             EEEecCCcHHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEeC
Confidence            22         1233456667777774 445542222    45899999775

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.12  E-value=1.3  Score=38.41  Aligned_cols=155  Identities=14%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhhccCCccEEEeccCchhhhhhhcCC--CCcEEEecCChhhHHHhhhcCCCcee-E-EEeeccchhhHHHH
Q 021323          113 KEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANA--EGITVFLEDDSNKINAVKRKSNRTQI-Y-KVDYQRPAKDAYKL  188 (314)
Q Consensus       113 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~--gGrTVFLEEd~~~i~~~~~~~p~lea-y-~V~Y~T~~~ea~~L  188 (314)
                      .|.-+-.-.+....|=+.||.|+|-...+=..+.|  .-+.+-+|=|+.-|+-+++-+|.... + +=+.+--..||.+.
T Consensus        65 he~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~  144 (285)
T d2o07a1          65 QEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF  144 (285)
T ss_dssp             HHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH
T ss_pred             HHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHH
Confidence            34333344556688999999999988777777776  35778899999999888775543211 0 01111224577777


Q ss_pred             HHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhh---hHhhhc---CC--C
Q 021323          189 LKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTA---SMLARN---GE--T  260 (314)
Q Consensus       189 L~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTA---avlARa---Gg--~  260 (314)
                      |+.      +                        +-++|||++|.+.+..+  |   ...||-   ..++|.   ||  .
T Consensus       145 l~~------~------------------------~~~yDvIi~D~~~p~~~--~---~~L~t~eF~~~~~~~L~~~Gi~v  189 (285)
T d2o07a1         145 MKQ------N------------------------QDAFDVIITDSSDPMGP--A---ESLFKESYYQLMKTALKEDGVLC  189 (285)
T ss_dssp             HHT------C------------------------SSCEEEEEEECC----------------CHHHHHHHHHEEEEEEEE
T ss_pred             Hhc------C------------------------CCCCCEEEEcCCCCCCc--c---cccccHHHHHHHHHhcCCCCeEE
Confidence            741      1                        22699999999886543  2   456763   222222   33  1


Q ss_pred             ceEEEecCC----hhHHHHHhhhhccccc-c--ccc-cCceeceEecCCC
Q 021323          261 TNVVVHDVD----RTIEKWFSWEFLCEEN-L--VSS-KGKLWNFRLTDQS  302 (314)
Q Consensus       261 TdVfVHDVd----R~VEk~fs~EFLC~~n-L--v~~-~GrLwHF~Ip~~~  302 (314)
                      +.+-..+.+    +.+-+.+...|-=-.. .  +.. .|..|=|.+.+.+
T Consensus       190 ~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~~~~g~w~f~~aSk~  239 (285)
T d2o07a1         190 CQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKN  239 (285)
T ss_dssp             EEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             EeccchhhhHHHHHHHHHHHHhcCCeeeEEeeeeeecCCCCeEEEEEECC
Confidence            211111222    3445556555542111 1  112 2678889887753

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=81.63  E-value=0.95  Score=38.90  Aligned_cols=57  Identities=16%  Similarity=0.088  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCC
Q 021323          113 KEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSN  169 (314)
Q Consensus       113 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p  169 (314)
                      .|.-+-.-.+....|=|.||.|+|-...+=..+-|.  .+...+|=|+.-++-+++-+|
T Consensus        62 he~l~h~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~  120 (274)
T d1iy9a_          62 HEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP  120 (274)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             hhhhccchhhccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhCh
Confidence            444444455667889999999999888877777663  477789999999888776543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.20  E-value=0.71  Score=40.47  Aligned_cols=51  Identities=16%  Similarity=0.128  Sum_probs=40.1

Q ss_pred             HHHhhccCCccEEEeccCchhhhhhhcCCCC--cEEEecCChhhHHHhhhcCC
Q 021323          119 SNLITSKAPCNLLIFGLDPQYLELSKANAEG--ITVFLEDDSNKINAVKRKSN  169 (314)
Q Consensus       119 ~~VL~~raPCNfLVFGLg~dslmWaalN~gG--rTVFLEEd~~~i~~~~~~~p  169 (314)
                      .-++.+..|=|.||.|+|-...+-..+.|.+  +.+.+|=|+.-|+-.++-+|
T Consensus        82 ~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~  134 (295)
T d1inla_          82 VPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLK  134 (295)
T ss_dssp             HHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             hhHhhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH
Confidence            3445568899999999999988888888753  46678999999887776443