Citrus Sinensis ID: 021335

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
Secondary Structure (PSIPRED)
cEEHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHHHHHHHHHHcccccEEHHHHccccccccccccccEEEEEEHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MIIFACIQIVLSqipnfhklSWLSILAAVMSFAYSSIGIGLSIAKvigdgphattltgttvgvdvsASEKVWRAFQAIGDVAFAYAFSTVLVEIQDtlkssppenksmkratAVGVTTTTLFYIMCGVMgylafgndapgnfltgfgfyepfwlvDFANACIAVHLIGAYQVFCQPIFGFVEKWcnkrwpenkfitsehginvpcygvyhvnsFRLVWRTAYVIVSAVLAMIFPFFNDFVGligaasfwpltvyfPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLktykpfqavqee
Flexible Loop (DISEMBL)
MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLkssppenksmkratavgVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
Low Complexity Region (SEG)
MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAttltgttvgvDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
Disordered region (IsUnstruct)
*IIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQD***************TAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKP*******
Disordered Region (DISOPRED)
MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQ*****
Disordered Region (DISEMBL)
MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
Disordered Region (DISPRO)
MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQ*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
P92934	481	Amino acid permease 6 OS=	yes	no	0.955	0.623	0.771	1e-138
Q42400	485	Amino acid permease 1 OS=	no	no	0.996	0.645	0.680	1e-131
O80592	475	Amino acid permease 8 OS=	no	no	0.984	0.650	0.647	1e-120
Q38967	493	Amino acid permease 2 OS=	no	no	0.984	0.626	0.536	1e-102
Q39134	476	Amino acid permease 3 OS=	no	no	0.984	0.649	0.554	1e-100
Q9FN04	466	Amino acid permease 4 OS=	no	no	0.980	0.660	0.535	5e-99
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.987	0.645	0.526	3e-97
Q9FF99	467	Probable amino acid perme	no	no	0.939	0.631	0.496	1e-77
Q9FKS8	446	Lysine histidine transpor	no	no	0.878	0.618	0.304	3e-32
Q9LRB5	441	Lysine histidine transpor	no	no	0.888	0.632	0.323	3e-32

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  489 bits (1260), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/302 (77%), Positives = 265/302 (87%), Gaps = 2/302 (0%)

Query: 11  LSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASE 69
           LSQIPNFH LSWLSILAAVMSF Y+SIG+GLSIAK  G G H  TTLTG TVG+DVS +E
Sbjct: 179 LSQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAE 238

Query: 70  KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP-ENKSMKRATAVGVTTTTLFYIMCGV 128
           K+WR FQAIGD+AFAYA+STVL+EIQDTLK+ PP ENK+MKRA+ VGV+TTT FY++CG 
Sbjct: 239 KIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGC 298

Query: 129 MGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKR 188
           +GY AFGNDAPGNFLTGFGFYEPFWL+DFAN CIAVHLIGAYQVFCQPIF FVE    KR
Sbjct: 299 VGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKR 358

Query: 189 WPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASF 248
           WP+NKFIT E+ I+VPC G + +N  RLVWRT+YV+V+AV+AMIFPFFNDF+GLIGAASF
Sbjct: 359 WPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASF 418

Query: 249 WPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPF 308
           WPLTVYFP+EM+IA+ KI +FSFTW WLKIL W+CFIVSLVA  GSVQGLIQSLK +KPF
Sbjct: 419 WPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQSLKDFKPF 478

Query: 309 QA 310
           QA
Sbjct: 479 QA 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  467 bits (1201), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 213/313 (68%), Positives = 270/313 (86%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           M +F  IQ++LSQIPNFHKLS+LSI+AAVMSF Y++IGIGL+IA V G     T++TGT 
Sbjct: 173 MAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYATIGIGLAIATVAGGKVGKTSMTGTA 232

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
           VGVDV+A++K+WR+FQA+GD+AFAYA++TVL+EIQDTL+SSP ENK+MKRA+ VGV+TTT
Sbjct: 233 VGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASLVGVSTTT 292

Query: 121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
            FYI+CG +GY AFGN+APG+FLT FGF+EPFWL+DFANACIAVHLIGAYQVF QPIF F
Sbjct: 293 FFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVFAQPIFQF 352

Query: 181 VEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240
           VEK CN+ +P+NKFITSE+ +NVP  G ++++ FRLVWRTAYV+++ V+AMIFPFFN  +
Sbjct: 353 VEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIFPFFNAIL 412

Query: 241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQ 300
           GLIGAASFWPLTVYFPVEM+IA+TKI+++S  W+ LK + + C IVSL+A  GS+ GLI 
Sbjct: 413 GLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAGLIS 472

Query: 301 SLKTYKPFQAVQE 313
           S+KTYKPF+ + E
Sbjct: 473 SVKTYKPFRTMHE 485

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  432 bits (1112), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 200/309 (64%), Positives = 253/309 (81%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           M  F  +QI+LSQ+PNFHKLS+LSI+AAVMSF+Y+SIGIGL+IA V       T LTGT 
Sbjct: 164 MAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYASIGIGLAIATVASGKIGKTELTGTV 223

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
           +GVDV+ASEKVW+ FQAIGD+AF+YAF+T+L+EIQDTL+SSPPENK MKRA+ VGV+TTT
Sbjct: 224 IGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASLVGVSTTT 283

Query: 121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
           +FYI+CG +GY AFGN APG+FLT FGFYEP+WL+DFANACIA+HLIGAYQV+ QP F F
Sbjct: 284 VFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQF 343

Query: 181 VEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240
           VE+ CNK+WP++ FI  E+   VP  G   VN FRLVWRT YV+++  +AMIFPFFN  +
Sbjct: 344 VEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAIL 403

Query: 241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQ 300
           GL+GA +FWPLTVYFPV M+IA+ K++++S  W+ L +L+  C IVS +A VGS+ GLI 
Sbjct: 404 GLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLIN 463

Query: 301 SLKTYKPFQ 309
           S+K+YKPF+
Sbjct: 464 SVKSYKPFK 472

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 167/311 (53%), Positives = 239/311 (76%), Gaps = 2/311 (0%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           MI+F   +I+LSQ+P+F ++ W+SI+AAVMSF YS+IG+ L I +V  +G    +LTG +
Sbjct: 182 MIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTYSAIGLALGIVQVAANGVFKGSLTGIS 241

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
           +G  V+ ++K+WR FQA+GD+AFAY++S VL+EIQDT++S P E+K+MK+AT + +  TT
Sbjct: 242 IGT-VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKISIAVTT 300

Query: 121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
           +FY++CG MGY AFG+ APGN LTGFGFY PFWL+D ANA I VHL+GAYQVF QPIF F
Sbjct: 301 IFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIFAF 360

Query: 181 VEKWCNKRWPENKFITSEHGINVPCY-GVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDF 239
           +EK   +R+P+N F++ E  I +P +   Y VN FR+V+R+ +V+ + V++M+ PFFND 
Sbjct: 361 IEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFNDV 420

Query: 240 VGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI 299
           VG++GA  FWPLTVYFPVEMYI + K+ ++S  WV L++L  +C ++S+VA VGS+ G++
Sbjct: 421 VGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVM 480

Query: 300 QSLKTYKPFQA 310
             LK YKPF++
Sbjct: 481 LDLKVYKPFKS 491

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/310 (55%), Positives = 238/310 (76%), Gaps = 1/310 (0%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           MI F  +QI+ SQIP+F +L WLSILAAVMSF YSS G+ L IA+V+ +G    +LTG +
Sbjct: 166 MIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGKVKGSLTGIS 225

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
           +G  V+ ++K+WR FQA+GD+AFAY++S +L+EIQDT+KS P E K+MK+AT V V+ TT
Sbjct: 226 IGA-VTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSVTT 284

Query: 121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
           +FY++CG MGY AFG+ +PGN LTGFGFY P+WL+D ANA I +HLIGAYQV+CQP+F F
Sbjct: 285 MFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLFAF 344

Query: 181 VEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240
           +EK  + ++P+++FI  +  I +P +    +N FRL+WRT +VI++ V++M+ PFFND V
Sbjct: 345 IEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVV 404

Query: 241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQ 300
           GL+GA  FWPLTVYFPVEMYIA+ KI R+S  WV L++    C +VS+ A  GS+ G++ 
Sbjct: 405 GLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLL 464

Query: 301 SLKTYKPFQA 310
            LK+YKPF++
Sbjct: 465 DLKSYKPFRS 474

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  361 bits (926), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 166/310 (53%), Positives = 233/310 (75%), Gaps = 2/310 (0%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           MI+F   +I+LSQI +F ++ WLSI+AA+MSF YS+IG+ L I +V  +G    +LTG +
Sbjct: 155 MIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTYSAIGLALGIIQVAANGVVKGSLTGIS 214

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
           +G  V+ ++K+WR FQA+GD+AFAY++S VL+EIQDT++S P E+K+MK AT + +  TT
Sbjct: 215 IGA-VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIAVTT 273

Query: 121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
            FY++CG MGY AFG+ APGN LTGFGFY PFWL+D ANA I +HL+GAYQVF QPIF F
Sbjct: 274 TFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFAQPIFAF 333

Query: 181 VEKWCNKRWPENKFITSEHGINVPCY-GVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDF 239
           +EK    R+P++  +T E+ I +P +   Y VN FR V+R+ +V+++ V++M+ PFFND 
Sbjct: 334 IEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLMPFFNDV 393

Query: 240 VGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI 299
           VG++GA  FWPLTVYFPVEMYI + K+ R+S  WV L++L   C +++LVA VGS+ G++
Sbjct: 394 VGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVM 453

Query: 300 QSLKTYKPFQ 309
             LK YKPF+
Sbjct: 454 LDLKVYKPFK 463

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  355 bits (911), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 166/315 (52%), Positives = 234/315 (74%), Gaps = 5/315 (1%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           MI F  +QI+ SQIP+F +L WLSI+AAVMSFAYS+IG+GL ++KV+ +     +LTG T
Sbjct: 164 MIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAYSAIGLGLGVSKVVENKEIKGSLTGVT 223

Query: 61  VGV-----DVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVG 115
           VG       V++S+K+WR FQ++G++AFAY++S +L+EIQDT+KS P E  +M++AT V 
Sbjct: 224 VGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKATFVS 283

Query: 116 VTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQ 175
           V  TT+FY++CG +GY AFG++APGN L   GF  P+WL+D AN  I +HL+GAYQV+CQ
Sbjct: 284 VAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGAYQVYCQ 343

Query: 176 PIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF 235
           P+F FVEK  ++R+PE++F+T E  I +     +++N FRLVWRT +V+ + +++M+ PF
Sbjct: 344 PLFAFVEKEASRRFPESEFVTKEIKIQLFPGKPFNLNLFRLVWRTFFVMTTTLISMLMPF 403

Query: 236 FNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSV 295
           FND VGL+GA  FWPLTVYFPVEMYIA+  + R+   WV L++L  +C  VS+ A  GSV
Sbjct: 404 FNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAAAGSV 463

Query: 296 QGLIQSLKTYKPFQA 310
            G++  LK YKPFQ+
Sbjct: 464 IGIVSDLKVYKPFQS 478

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  289 bits (740), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 150/302 (49%), Positives = 211/302 (69%), Gaps = 7/302 (2%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           M++F   QI +SQIPNFH + WLS++AA+MSF YS IGIGL++ K+I +      + G+ 
Sbjct: 165 MVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGLALGKIIEN----RKIEGSI 220

Query: 61  VGVDV-SASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTT 119
            G+   +  EKVW  FQA+G++AF+Y FS +L+EIQDTL+S P E ++MK+A+ V V   
Sbjct: 221 RGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQ 280

Query: 120 TLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFG 179
           T F+  CG  GY AFG+  PGN LTGFGFYEPFWLVDFANACI +HL+G YQV+ QPIF 
Sbjct: 281 TFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFA 340

Query: 180 FVEKWCNKRWPENKFITSEHGINVPCY--GVYHVNSFRLVWRTAYVIVSAVLAMIFPFFN 237
             E+   K++PENKFI   +G  +P        +N  R+  RT YV+++  +A++FP+FN
Sbjct: 341 AAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFN 400

Query: 238 DFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQG 297
           + +G++GA +FWPL VYFPVEM I + KIR ++  W+ L+   + C +V L++LVGS+ G
Sbjct: 401 EVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYG 460

Query: 298 LI 299
           L+
Sbjct: 461 LV 462

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 146/312 (46%), Gaps = 36/312 (11%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           ++IFA +  VLS +PNF+ +S +S+ AAVMS +YS+I    S +K + +         TT
Sbjct: 162 IMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTT 221

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTT 118
            G        V+  F  +GDVAFAYA   V++EIQ T+ S+P  P    M R   V    
Sbjct: 222 AGT-------VFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIV 274

Query: 119 TTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 178
             L Y    ++GY  FGN    N L      +P WL+  AN  + +H+IG+YQ++  P+F
Sbjct: 275 VALCYFPVALVGYYIFGNGVEDNILMSLK--KPAWLIATANIFVVIHVIGSYQIYAMPVF 332

Query: 179 GFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFND 238
             +E    K+                        + R   R  YV  +  + M FPFF  
Sbjct: 333 DMMETLLVKK-----------------LNFRPTTTLRFFVRNFYVAATMFVGMTFPFFGG 375

Query: 239 FVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALV----GS 294
            +   G  +F P T + P  +++A  K +++S +W W     W C +  L  +V    G 
Sbjct: 376 LLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSW-WAN---WVCIVFGLFLMVLSPIGG 431

Query: 295 VQGLIQSLKTYK 306
           ++ ++   K YK
Sbjct: 432 LRTIVIQAKGYK 443

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  139 bits (349), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 154/315 (48%), Gaps = 36/315 (11%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           ++IFA +  V+S +PNF+ +S +S+ AAVMS  YS+I    S+ K +      +    T 
Sbjct: 157 IMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGVHPDVDYSPRASTD 216

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTT 118
           VG       KV+    A+GDVAFAYA   V++EIQ T+ S+P  P    M R   V    
Sbjct: 217 VG-------KVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIV 269

Query: 119 TTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 178
             + Y     +GY  FGN    N L      +P WL+  AN  + +H+IG+YQ+F  P+F
Sbjct: 270 VAICYFPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVF 327

Query: 179 GFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFND 238
             +E    K+   N           P +        R + R+ YV  + ++A+  PFF  
Sbjct: 328 DMLETVLVKKMNFN-----------PSF------KLRFITRSLYVAFTMIVAICVPFFGG 370

Query: 239 FVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIV----SLVALVGS 294
            +G  G  +F P T Y P  M++   K +RF  +W       W C IV    +++A +G 
Sbjct: 371 LLGFFGGFAFAPTTYYLPCIMWLVLKKPKRFGLSWT----ANWFCIIVGVLLTILAPIGG 426

Query: 295 VQGLIQSLKTYKPFQ 309
           ++ +I + KTYK F 
Sbjct: 427 LRTIIINAKTYKFFS 441

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
284519840	483	amino acid permease 6 [Populus tremula x	0.993	0.645	0.766	1e-144
225458966	483	PREDICTED: amino acid permease 6 [Vitis	0.993	0.645	0.759	1e-143
31455393	481	amino acid permease 6 [Brassica napus]	0.993	0.648	0.770	1e-142
255537896	484	amino acid transporter, putative [Ricinu	0.993	0.644	0.75	1e-141
449436914	477	PREDICTED: amino acid permease 6-like [C	0.987	0.649	0.738	1e-140
224063403	488	amino acid permease [Populus trichocarpa	0.993	0.639	0.746	1e-138
363814354	479	uncharacterized protein LOC100777963 [Gl	0.993	0.651	0.731	1e-138
356515653	479	PREDICTED: amino acid permease 6-like [G	0.993	0.651	0.725	1e-137
357436349	472	Amino acid transporter [Medicago truncat	0.993	0.661	0.712	1e-136
15240523	481	amino acid permease 6 [Arabidopsis thali	0.955	0.623	0.771	1e-136

>gi|284519840|gb|ADB92670.1| amino acid permease 6 [Populus tremula x Populus alba]

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/312 (76%), Positives = 277/312 (88%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           MIIFACIQI+LSQIPNFHKLSWLSILAAVMSFAYSSIG+GLS+AKVIG     T+LTG T
Sbjct: 172 MIIFACIQIMLSQIPNFHKLSWLSILAAVMSFAYSSIGLGLSLAKVIGGAHARTSLTGVT 231

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
           VGVDVSA +KVWR FQA+GD+AFAYA+STVL+EIQDTLKSSPPENK+MKRA+ VG+ TTT
Sbjct: 232 VGVDVSAEQKVWRTFQALGDIAFAYAYSTVLIEIQDTLKSSPPENKAMKRASFVGILTTT 291

Query: 121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
            FYI+CG +GY AFGNDAPGNFLTGFGFYEPFWL+D ANACIA+HLIGAYQVFCQPIF F
Sbjct: 292 TFYILCGCLGYAAFGNDAPGNFLTGFGFYEPFWLIDLANACIAIHLIGAYQVFCQPIFSF 351

Query: 181 VEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240
           VE  C++RWP++KF+T EH IN+P YGVY++N FRLVWRT YVIV+AVLAMI PFFNDF+
Sbjct: 352 VESRCHRRWPDSKFMTREHAINIPFYGVYYLNLFRLVWRTLYVIVTAVLAMILPFFNDFL 411

Query: 241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQ 300
            L+GA SFWPLTVYFP+EMY+AR+K+ +FSF W  LK+L W+C  VSLV+  GSV+GLIQ
Sbjct: 412 ALLGAISFWPLTVYFPIEMYMARSKMPKFSFRWTSLKMLSWACLAVSLVSAAGSVEGLIQ 471

Query: 301 SLKTYKPFQAVQ 312
           +LKTYKPF+A Q
Sbjct: 472 ALKTYKPFKAQQ 483

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458966|ref|XP_002285557.1| PREDICTED: amino acid permease 6 [Vitis vinifera] gi|302142129|emb|CBI19332.3| unnamed protein product [Vitis vinifera]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 237/312 (75%), Positives = 280/312 (89%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           MIIFACIQIVLSQIPNFHKLSWLSILAAVMSF+Y+SIGIGLSIA+V G     TTLTG T
Sbjct: 172 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFSYASIGIGLSIARVAGGAHARTTLTGRT 231

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
           VGVD+S+SEKVWR F++IG++AFAYA+STVLVEIQDTLKSSPPENK MK+AT  G++TT+
Sbjct: 232 VGVDLSSSEKVWRTFESIGNIAFAYAYSTVLVEIQDTLKSSPPENKVMKKATFAGISTTS 291

Query: 121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
           LFY++CG +GY AFGNDAPGNFLTGFGF+EPFWL+D AN  IA+HLIGAYQVFCQP+FGF
Sbjct: 292 LFYVLCGCVGYAAFGNDAPGNFLTGFGFFEPFWLIDLANVFIAIHLIGAYQVFCQPVFGF 351

Query: 181 VEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240
           VEKWCNKRWPE+KFIT+EH I+VP YG+Y++N FRLVWRT YVIV+AVLAM+FPFFN+ +
Sbjct: 352 VEKWCNKRWPESKFITTEHCIDVPLYGIYYLNLFRLVWRTVYVIVTAVLAMLFPFFNEVM 411

Query: 241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQ 300
           G +GAASFWPLTVYFP+EM+IARTKI +FSFTW WLKIL W+C +VS+VA  GS+QGLI+
Sbjct: 412 GFLGAASFWPLTVYFPIEMHIARTKIPKFSFTWTWLKILSWTCLMVSVVAAAGSIQGLIK 471

Query: 301 SLKTYKPFQAVQ 312
            ++ YKPFQ  +
Sbjct: 472 EIEKYKPFQTQE 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|31455393|emb|CAD92450.1| amino acid permease 6 [Brassica napus]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/314 (77%), Positives = 280/314 (89%), Gaps = 2/314 (0%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGT 59
           MIIFACIQIVLSQIPNFH LSWLSILAAVMSF+Y+SIGIGLSIAKV G G HA T LTG 
Sbjct: 168 MIIFACIQIVLSQIPNFHNLSWLSILAAVMSFSYASIGIGLSIAKVAGGGVHARTALTGV 227

Query: 60  TVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP-ENKSMKRATAVGVTT 118
           TVGVDV+ SEKVWR FQA+GD+AFAYA+STVL+EIQDTLK+SPP ENK+MKRA+ VGV+T
Sbjct: 228 TVGVDVTGSEKVWRTFQAVGDIAFAYAYSTVLIEIQDTLKASPPSENKAMKRASLVGVST 287

Query: 119 TTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 178
           TT FY++CG +GY AFGN+APGNFLTGFGFYEPFWL+DFAN CIAVHL+GAYQVFCQPIF
Sbjct: 288 TTFFYMLCGCVGYAAFGNNAPGNFLTGFGFYEPFWLIDFANVCIAVHLVGAYQVFCQPIF 347

Query: 179 GFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFND 238
            FVE    KRWP+NKFIT E+ +NVPC G + ++ FRLVWRT+YV+V+AV+AMIFPFFND
Sbjct: 348 QFVESQSAKRWPDNKFITGEYKMNVPCGGDFGISLFRLVWRTSYVVVTAVVAMIFPFFND 407

Query: 239 FVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGL 298
           F+GLIGAASFWPLTVYFP+EM+IA+  +++FSFTW WLKIL W+CF+VSLVA  GSVQGL
Sbjct: 408 FLGLIGAASFWPLTVYFPIEMHIAQKNMKKFSFTWTWLKILSWACFLVSLVAAAGSVQGL 467

Query: 299 IQSLKTYKPFQAVQ 312
           IQSLK +KPFQA +
Sbjct: 468 IQSLKDFKPFQAPE 481

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537896|ref|XP_002510013.1| amino acid transporter, putative [Ricinus communis] gi|223550714|gb|EEF52200.1| amino acid transporter, putative [Ricinus communis]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/312 (75%), Positives = 280/312 (89%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           MIIFACIQI+LSQIPNFHKLSWLS+LAAVMSFAYSSIG+GLSIAKV G     T++TGTT
Sbjct: 173 MIIFACIQIILSQIPNFHKLSWLSVLAAVMSFAYSSIGLGLSIAKVAGGEHVRTSITGTT 232

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
           VGVDV+A++K+WRAFQ+IGD+AFAYA+STVL+EIQDT+KS PPENK+MK+A+ VG+ TTT
Sbjct: 233 VGVDVTAAQKIWRAFQSIGDIAFAYAYSTVLIEIQDTIKSGPPENKAMKKASFVGIVTTT 292

Query: 121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
           +FYI+CG +GY AFGNDAPGNFLTGFGFYEPFWL+D AN CIA+HLIGAYQVFCQPIF F
Sbjct: 293 MFYILCGCIGYAAFGNDAPGNFLTGFGFYEPFWLIDIANVCIAIHLIGAYQVFCQPIFSF 352

Query: 181 VEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240
           +EK   +RWPENKFIT+E+ IN+P  GVY++++FRLVWRT YVIV+A++AMI PFFNDF+
Sbjct: 353 MEKNSRQRWPENKFITTEYAINIPFLGVYYLSTFRLVWRTLYVIVTAIVAMILPFFNDFL 412

Query: 241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQ 300
           GLIGAA+FWPLTVYFP+EMYI RT+I +FS TW+WLKIL  +C +VSL+A  GSV+GLI 
Sbjct: 413 GLIGAAAFWPLTVYFPIEMYITRTRIPKFSSTWIWLKILTLACLVVSLLAAAGSVEGLIN 472

Query: 301 SLKTYKPFQAVQ 312
           SLKTYKPFQ+ Q
Sbjct: 473 SLKTYKPFQSEQ 484

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436914|ref|XP_004136237.1| PREDICTED: amino acid permease 6-like [Cucumis sativus] gi|449522221|ref|XP_004168126.1| PREDICTED: amino acid permease 6-like [Cucumis sativus]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 229/310 (73%), Positives = 279/310 (90%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           MII+A IQ++LSQIPNFHKLS+LSI+AAVMSFAY++IG+GLSIA+V+GDG   TTLTG T
Sbjct: 168 MIIYAAIQLILSQIPNFHKLSFLSIIAAVMSFAYAAIGVGLSIARVVGDGHARTTLTGAT 227

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
           +GVDV+  EK+++AFQA+GD+AFAY++S VLVEIQDTL+SSP ENK+MK+A+ VG+TTT+
Sbjct: 228 IGVDVTGQEKIFKAFQALGDIAFAYSYSMVLVEIQDTLRSSPAENKAMKKASFVGITTTS 287

Query: 121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
           LFYI+CG +GY AFGNDAPGNFLTGFGFYEPFWL+DFAN CI VHLIGAYQVFCQP +GF
Sbjct: 288 LFYILCGCVGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIVVHLIGAYQVFCQPFYGF 347

Query: 181 VEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240
           VEKWCNK+WPE+ FIT+EH IN+P  G Y +N FRL+WRT YVI++AV+AMIFPFFNDF+
Sbjct: 348 VEKWCNKKWPESTFITTEHTINLPFNGEYQLNYFRLIWRTIYVILTAVVAMIFPFFNDFL 407

Query: 241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQ 300
           GLIGAASFWPLTVYFPVEMYIARTK+ RFS TW+WLK L W+C ++SL+A VGS+QGL Q
Sbjct: 408 GLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIWLKTLSWACLVISLIAAVGSLQGLAQ 467

Query: 301 SLKTYKPFQA 310
            +KTY+PF++
Sbjct: 468 DVKTYRPFKS 477

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063403|ref|XP_002301129.1| amino acid permease [Populus trichocarpa] gi|222842855|gb|EEE80402.1| amino acid permease [Populus trichocarpa]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 235/315 (74%), Positives = 274/315 (86%), Gaps = 3/315 (0%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           MIIFACIQI+LSQIPNFHKLSWLSILAAVMSFAY+SIG+GLS+AKVIG     T+LTG T
Sbjct: 174 MIIFACIQIMLSQIPNFHKLSWLSILAAVMSFAYASIGLGLSLAKVIGGAHARTSLTGVT 233

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ---DTLKSSPPENKSMKRATAVGVT 117
           VGVDVSA +KVWR FQA+GD+AFAYA+ST+ + ++   DTLKSSPPENK+MKRA+ VG+ 
Sbjct: 234 VGVDVSAQQKVWRTFQALGDIAFAYAYSTLNLTVELRDDTLKSSPPENKAMKRASFVGIL 293

Query: 118 TTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPI 177
           TTT FYI+CG +GY AFGNDAPGNFLTGFGFYEPF L+D AN CIA+HLIGAYQVFCQPI
Sbjct: 294 TTTTFYILCGCLGYAAFGNDAPGNFLTGFGFYEPFVLIDIANVCIAIHLIGAYQVFCQPI 353

Query: 178 FGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFN 237
           F FVE  C++RWP++KFITSEH IN+P YGVY++N FRLVWRT YVIV+AVLAMI PFFN
Sbjct: 354 FSFVESRCHRRWPDSKFITSEHAINIPFYGVYYLNLFRLVWRTLYVIVTAVLAMILPFFN 413

Query: 238 DFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQG 297
           DF+ L+GA SFWPLTVYFPVEMY+ARTK+ +FSF W  LK+L W+C  VSLV+  GSV+G
Sbjct: 414 DFLALLGAISFWPLTVYFPVEMYMARTKMPKFSFRWTSLKMLSWACLAVSLVSAAGSVEG 473

Query: 298 LIQSLKTYKPFQAVQ 312
           LIQ+LKTYKPF+A Q
Sbjct: 474 LIQALKTYKPFKAQQ 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814354|ref|NP_001242816.1| uncharacterized protein LOC100777963 [Glycine max] gi|255642183|gb|ACU21356.1| unknown [Glycine max]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 229/313 (73%), Positives = 271/313 (86%), Gaps = 1/313 (0%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDG-PHATTLTGT 59
           MI+FACIQIVLSQIPNFHKL WLSI+AAVMSFAYSSIG+GLS+AKV G G P  TTLTG 
Sbjct: 167 MILFACIQIVLSQIPNFHKLWWLSIVAAVMSFAYSSIGLGLSVAKVAGGGEPVRTTLTGV 226

Query: 60  TVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTT 119
            VGVDV+ SEKVWR FQAIGD+AFAYA+S VL+EIQDTLKSSPPENK MKRA+ +G+ TT
Sbjct: 227 QVGVDVTGSEKVWRTFQAIGDIAFAYAYSNVLIEIQDTLKSSPPENKVMKRASLIGILTT 286

Query: 120 TLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFG 179
           TLFY++CG +GY AFGNDAPGNFLTGFGFYEPFWL+DFAN CIAVHL+GAYQVFCQPIFG
Sbjct: 287 TLFYVLCGCLGYAAFGNDAPGNFLTGFGFYEPFWLIDFANICIAVHLVGAYQVFCQPIFG 346

Query: 180 FVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDF 239
           FVE W  +RWP ++F+  EH +N P  G + VN FR+VWRT YVI++A++AM+FPFFNDF
Sbjct: 347 FVENWGRERWPNSQFVNGEHALNFPLCGTFPVNFFRVVWRTTYVIITALIAMMFPFFNDF 406

Query: 240 VGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI 299
           +GLIG+ SFWPLTVYFP+EMYI ++K++RFSFTW WLKIL W+C IVS+++  GS+QGL 
Sbjct: 407 LGLIGSLSFWPLTVYFPIEMYIKQSKMQRFSFTWTWLKILSWACLIVSIISAAGSIQGLA 466

Query: 300 QSLKTYKPFQAVQ 312
           Q LK Y+PF+A Q
Sbjct: 467 QDLKKYQPFKAQQ 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515653|ref|XP_003526513.1| PREDICTED: amino acid permease 6-like [Glycine max]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 227/313 (72%), Positives = 270/313 (86%), Gaps = 1/313 (0%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDG-PHATTLTGT 59
           MI+FACIQIVLSQIPNFHKL WLSI+AAVMSFAYSSIG+GLS+AKV G G P  TTLTG 
Sbjct: 167 MILFACIQIVLSQIPNFHKLWWLSIVAAVMSFAYSSIGLGLSVAKVAGGGEPVRTTLTGV 226

Query: 60  TVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTT 119
            VGVDV+ SEKVWR FQAIGD+AFAYA+S VL+EIQDTLKSSPPENK MKRA+ +G+ TT
Sbjct: 227 QVGVDVTGSEKVWRTFQAIGDIAFAYAYSNVLIEIQDTLKSSPPENKVMKRASLIGILTT 286

Query: 120 TLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFG 179
           TLFY++CG +GY AFGNDAPGNFLTGFGFYEPFWL+DFAN CIAVHL+GAYQVFCQPIFG
Sbjct: 287 TLFYVLCGCLGYAAFGNDAPGNFLTGFGFYEPFWLIDFANICIAVHLVGAYQVFCQPIFG 346

Query: 180 FVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDF 239
           FVE W  +RWP + F+  EH +  P +G + VN FR+VWRT YVI++A++AM+FPFFNDF
Sbjct: 347 FVENWGKERWPNSHFVNGEHALKFPLFGTFPVNFFRVVWRTTYVIITALIAMMFPFFNDF 406

Query: 240 VGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI 299
           +GLIG+ SFWPLTVYFP+EMYI ++K+++FSFTW WLKIL W+C IVS+++  GS+QGL 
Sbjct: 407 LGLIGSLSFWPLTVYFPIEMYIKQSKMQKFSFTWTWLKILSWACLIVSIISAAGSIQGLA 466

Query: 300 QSLKTYKPFQAVQ 312
           Q LK Y+PF+A Q
Sbjct: 467 QDLKKYQPFKAQQ 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436349|ref|XP_003588450.1| Amino acid transporter [Medicago truncatula] gi|355477498|gb|AES58701.1| Amino acid transporter [Medicago truncatula]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 223/313 (71%), Positives = 271/313 (86%), Gaps = 1/313 (0%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATT-LTGT 59
           MIIFACIQIVL QIPNFH+LSWLSI+AAVMSFAYSSIG+GLS+AKV G G H TT LTG 
Sbjct: 160 MIIFACIQIVLCQIPNFHELSWLSIVAAVMSFAYSSIGLGLSVAKVAGGGNHVTTSLTGV 219

Query: 60  TVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTT 119
            +GVDV+A+EKVWR FQAIGD+AFAYAFS VL+EIQDTLKSSPPEN+ MKRA+ +G+ TT
Sbjct: 220 QIGVDVTATEKVWRMFQAIGDIAFAYAFSNVLIEIQDTLKSSPPENRVMKRASLIGILTT 279

Query: 120 TLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFG 179
           TLFY++CG +GY AFGNDAPGNFLTGFGFYEPFWL+DFAN CIAVHLIGAYQVF QPIFG
Sbjct: 280 TLFYVLCGTLGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFVQPIFG 339

Query: 180 FVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDF 239
           FVE    ++WP++KF+  EH +N+P YG Y+VN FR++WR+ YVI++A++AM+FPFFNDF
Sbjct: 340 FVEGQSKQKWPDSKFVNGEHAMNIPLYGSYNVNYFRVIWRSCYVIITAIIAMLFPFFNDF 399

Query: 240 VGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI 299
           +GLIG+ SF+PLTVYFP+EMYI +T + ++SFTW WLKIL W C ++S+++  GS+QGL 
Sbjct: 400 LGLIGSLSFYPLTVYFPIEMYIKKTNMPKYSFTWTWLKILSWLCLVISIISAAGSIQGLA 459

Query: 300 QSLKTYKPFQAVQ 312
            SLKTYKPF+  Q
Sbjct: 460 TSLKTYKPFRGEQ 472

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240523|ref|NP_199774.1| amino acid permease 6 [Arabidopsis thaliana] gi|75220393|sp|P92934.1|AAP6_ARATH RecName: Full=Amino acid permease 6; AltName: Full=Amino acid transporter AAP6 gi|1769887|emb|CAA65051.1| amino acid permease 6 [Arabidopsis thaliana] gi|8809686|dbj|BAA97227.1| amino acid permease 6 [Arabidopsis thaliana] gi|110738094|dbj|BAF00980.1| amino acid permease 6 [Arabidopsis thaliana] gi|332008455|gb|AED95838.1| amino acid permease 6 [Arabidopsis thaliana]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/302 (77%), Positives = 265/302 (87%), Gaps = 2/302 (0%)

Query: 11  LSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASE 69
           LSQIPNFH LSWLSILAAVMSF Y+SIG+GLSIAK  G G H  TTLTG TVG+DVS +E
Sbjct: 179 LSQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAE 238

Query: 70  KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP-ENKSMKRATAVGVTTTTLFYIMCGV 128
           K+WR FQAIGD+AFAYA+STVL+EIQDTLK+ PP ENK+MKRA+ VGV+TTT FY++CG 
Sbjct: 239 KIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGC 298

Query: 129 MGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKR 188
           +GY AFGNDAPGNFLTGFGFYEPFWL+DFAN CIAVHLIGAYQVFCQPIF FVE    KR
Sbjct: 299 VGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKR 358

Query: 189 WPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASF 248
           WP+NKFIT E+ I+VPC G + +N  RLVWRT+YV+V+AV+AMIFPFFNDF+GLIGAASF
Sbjct: 359 WPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASF 418

Query: 249 WPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPF 308
           WPLTVYFP+EM+IA+ KI +FSFTW WLKIL W+CFIVSLVA  GSVQGLIQSLK +KPF
Sbjct: 419 WPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQSLKDFKPF 478

Query: 309 QA 310
           QA
Sbjct: 479 QA 480

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.987	0.644	0.746	1.7e-128
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.996	0.645	0.658	3.4e-116
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.984	0.650	0.624	2.1e-107
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.984	0.649	0.541	8.7e-95
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.984	0.626	0.524	7e-93
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.980	0.660	0.522	1.5e-90
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.987	0.645	0.511	2e-88
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.942	0.633	0.495	2.9e-80
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.550	0.392	0.385	5.2e-43
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.550	0.392	0.369	5.2e-41

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 233/312 (74%), Positives = 265/312 (84%)

Query:     1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXX 60
             MIIFA IQI+LSQIPNFH LSWLSILAAVMSF Y+SIG+GLSIAK  G G H        
Sbjct:   169 MIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGV 228

Query:    61 XXX-DVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP-ENKSMKRATAVGVTT 118
                 DVS +EK+WR FQAIGD+AFAYA+STVL+EIQDTLK+ PP ENK+MKRA+ VGV+T
Sbjct:   229 TVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVST 288

Query:   119 TTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 178
             TT FY++CG +GY AFGNDAPGNFLTGFGFYEPFWL+DFAN CIAVHLIGAYQVFCQPIF
Sbjct:   289 TTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFCQPIF 348

Query:   179 GFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFND 238
              FVE    KRWP+NKFIT E+ I+VPC G + +N  RLVWRT+YV+V+AV+AMIFPFFND
Sbjct:   349 QFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFND 408

Query:   239 FVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGL 298
             F+GLIGAASFWPLTVYFP+EM+IA+ KI +FSFTW WLKIL W+CFIVSLVA  GSVQGL
Sbjct:   409 FLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGL 468

Query:   299 IQSLKTYKPFQA 310
             IQSLK +KPFQA
Sbjct:   469 IQSLKDFKPFQA 480

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
 Identities = 206/313 (65%), Positives = 261/313 (83%)

Query:     1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXX 60
             M +F  IQ++LSQIPNFHKLS+LSI+AAVMSF Y++IGIGL+IA V G            
Sbjct:   173 MAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYATIGIGLAIATVAGGKVGKTSMTGTA 232

Query:    61 XXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
                DV+A++K+WR+FQA+GD+AFAYA++TVL+EIQDTL+SSP ENK+MKRA+ VGV+TTT
Sbjct:   233 VGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASLVGVSTTT 292

Query:   121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
              FYI+CG +GY AFGN+APG+FLT FGF+EPFWL+DFANACIAVHLIGAYQVF QPIF F
Sbjct:   293 FFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVFAQPIFQF 352

Query:   181 VEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240
             VEK CN+ +P+NKFITSE+ +NVP  G ++++ FRLVWRTAYV+++ V+AMIFPFFN  +
Sbjct:   353 VEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIFPFFNAIL 412

Query:   241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQ 300
             GLIGAASFWPLTVYFPVEM+IA+TKI+++S  W+ LK + + C IVSL+A  GS+ GLI 
Sbjct:   413 GLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAGLIS 472

Query:   301 SLKTYKPFQAVQE 313
             S+KTYKPF+ + E
Sbjct:   473 SVKTYKPFRTMHE 485

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
 Identities = 193/309 (62%), Positives = 245/309 (79%)

Query:     1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXX 60
             M  F  +QI+LSQ+PNFHKLS+LSI+AAVMSF+Y+SIGIGL+IA V              
Sbjct:   164 MAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYASIGIGLAIATVASGKIGKTELTGTV 223

Query:    61 XXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
                DV+ASEKVW+ FQAIGD+AF+YAF+T+L+EIQDTL+SSPPENK MKRA+ VGV+TTT
Sbjct:   224 IGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASLVGVSTTT 283

Query:   121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
             +FYI+CG +GY AFGN APG+FLT FGFYEP+WL+DFANACIA+HLIGAYQV+ QP F F
Sbjct:   284 VFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQF 343

Query:   181 VEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240
             VE+ CNK+WP++ FI  E+   VP  G   VN FRLVWRT YV+++  +AMIFPFFN  +
Sbjct:   344 VEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAIL 403

Query:   241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQ 300
             GL+GA +FWPLTVYFPV M+IA+ K++++S  W+ L +L+  C IVS +A VGS+ GLI 
Sbjct:   404 GLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLIN 463

Query:   301 SLKTYKPFQ 309
             S+K+YKPF+
Sbjct:   464 SVKSYKPFK 472

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 168/310 (54%), Positives = 231/310 (74%)

Query:     1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXX 60
             MI F  +QI+ SQIP+F +L WLSILAAVMSF YSS G+ L IA+V+ +G          
Sbjct:   166 MIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGK-VKGSLTGI 224

Query:    61 XXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
                 V+ ++K+WR FQA+GD+AFAY++S +L+EIQDT+KS P E K+MK+AT V V+ TT
Sbjct:   225 SIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSVTT 284

Query:   121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
             +FY++CG MGY AFG+ +PGN LTGFGFY P+WL+D ANA I +HLIGAYQV+CQP+F F
Sbjct:   285 MFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLFAF 344

Query:   181 VEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240
             +EK  + ++P+++FI  +  I +P +    +N FRL+WRT +VI++ V++M+ PFFND V
Sbjct:   345 IEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVV 404

Query:   241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQ 300
             GL+GA  FWPLTVYFPVEMYIA+ KI R+S  WV L++    C +VS+ A  GS+ G++ 
Sbjct:   405 GLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLL 464

Query:   301 SLKTYKPFQA 310
              LK+YKPF++
Sbjct:   465 DLKSYKPFRS 474

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 163/311 (52%), Positives = 232/311 (74%)

Query:     1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXX 60
             MI+F   +I+LSQ+P+F ++ W+SI+AAVMSF YS+IG+ L I +V  +G          
Sbjct:   182 MIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTYSAIGLALGIVQVAANGVFKGSLTGIS 241

Query:    61 XXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
                 V+ ++K+WR FQA+GD+AFAY++S VL+EIQDT++S P E+K+MK+AT + +  TT
Sbjct:   242 IGT-VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKISIAVTT 300

Query:   121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
             +FY++CG MGY AFG+ APGN LTGFGFY PFWL+D ANA I VHL+GAYQVF QPIF F
Sbjct:   301 IFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIFAF 360

Query:   181 VEKWCNKRWPENKFITSEHGINVPCY-GVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDF 239
             +EK   +R+P+N F++ E  I +P +   Y VN FR+V+R+ +V+ + V++M+ PFFND 
Sbjct:   361 IEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFNDV 420

Query:   240 VGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI 299
             VG++GA  FWPLTVYFPVEMYI + K+ ++S  WV L++L  +C ++S+VA VGS+ G++
Sbjct:   421 VGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVM 480

Query:   300 QSLKTYKPFQA 310
               LK YKPF++
Sbjct:   481 LDLKVYKPFKS 491

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 162/310 (52%), Positives = 226/310 (72%)

Query:     1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXX 60
             MI+F   +I+LSQI +F ++ WLSI+AA+MSF YS+IG+ L I +V  +G          
Sbjct:   155 MIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTYSAIGLALGIIQVAANGV-VKGSLTGI 213

Query:    61 XXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
                 V+ ++K+WR FQA+GD+AFAY++S VL+EIQDT++S P E+K+MK AT + +  TT
Sbjct:   214 SIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIAVTT 273

Query:   121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
              FY++CG MGY AFG+ APGN LTGFGFY PFWL+D ANA I +HL+GAYQVF QPIF F
Sbjct:   274 TFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFAQPIFAF 333

Query:   181 VEKWCNKRWPENKFITSEHGINVPCY-GVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDF 239
             +EK    R+P++  +T E+ I +P +   Y VN FR V+R+ +V+++ V++M+ PFFND 
Sbjct:   334 IEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLMPFFNDV 393

Query:   240 VGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI 299
             VG++GA  FWPLTVYFPVEMYI + K+ R+S  WV L++L   C +++LVA VGS+ G++
Sbjct:   394 VGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVM 453

Query:   300 QSLKTYKPFQ 309
               LK YKPF+
Sbjct:   454 LDLKVYKPFK 463

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 161/315 (51%), Positives = 228/315 (72%)

Query:     1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGD----GP-HAXX 55
             MI F  +QI+ SQIP+F +L WLSI+AAVMSFAYS+IG+GL ++KV+ +    G      
Sbjct:   164 MIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAYSAIGLGLGVSKVVENKEIKGSLTGVT 223

Query:    56 XXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVG 115
                      V++S+K+WR FQ++G++AFAY++S +L+EIQDT+KS P E  +M++AT V 
Sbjct:   224 VGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKATFVS 283

Query:   116 VTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQ 175
             V  TT+FY++CG +GY AFG++APGN L   GF  P+WL+D AN  I +HL+GAYQV+CQ
Sbjct:   284 VAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGAYQVYCQ 343

Query:   176 PIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF 235
             P+F FVEK  ++R+PE++F+T E  I +     +++N FRLVWRT +V+ + +++M+ PF
Sbjct:   344 PLFAFVEKEASRRFPESEFVTKEIKIQLFPGKPFNLNLFRLVWRTFFVMTTTLISMLMPF 403

Query:   236 FNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSV 295
             FND VGL+GA  FWPLTVYFPVEMYIA+  + R+   WV L++L  +C  VS+ A  GSV
Sbjct:   404 FNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAAAGSV 463

Query:   296 QGLIQSLKTYKPFQA 310
              G++  LK YKPFQ+
Sbjct:   464 IGIVSDLKVYKPFQS 478

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 149/301 (49%), Positives = 207/301 (68%)

Query:     1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXX 60
             M++F   QI +SQIPNFH + WLS++AA+MSF YS IGIGL++ K+I    +        
Sbjct:   165 MVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGLALGKII---ENRKIEGSIR 221

Query:    61 XXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
                  +  EKVW  FQA+G++AF+Y FS +L+EIQDTL+S P E ++MK+A+ V V   T
Sbjct:   222 GIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQT 281

Query:   121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
              F+  CG  GY AFG+  PGN LTGFGFYEPFWLVDFANACI +HL+G YQV+ QPIF  
Sbjct:   282 FFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAA 341

Query:   181 VEKWCNKRWPENKFITSEHGINVPCY-G-VYHVNSFRLVWRTAYVIVSAVLAMIFPFFND 238
              E+   K++PENKFI   +G  +P   G    +N  R+  RT YV+++  +A++FP+FN+
Sbjct:   342 AERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNE 401

Query:   239 FVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGL 298
              +G++GA +FWPL VYFPVEM I + KIR ++  W+ L+   + C +V L++LVGS+ GL
Sbjct:   402 VLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGL 461

Query:   299 I 299
             +
Sbjct:   462 V 462

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 314 (115.6 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 71/184 (38%), Positives = 103/184 (55%)

Query:     1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXX 60
             ++IFA +  VLSQ+PNF+ +S +S+ AAVMS +YS+I  G S+ K    G  A       
Sbjct:   157 IMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIAWGASVDK----GKVADVDYHLR 212

Query:    61 XXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTT 118
                  +++ KV+  F A+GDVAFAYA   V++EIQ T+ S+P  P  K M +   V    
Sbjct:   213 AT---TSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYII 269

Query:   119 TTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 178
               L Y    ++GY AFGN    N L       P WL+  AN  + +H+IG+YQ++  P+F
Sbjct:   270 VALCYFPVALVGYWAFGNHVDDNILITLS--RPKWLIALANMMVVIHVIGSYQIYAMPVF 327

Query:   179 GFVE 182
               +E
Sbjct:   328 DMIE 331

GO:0009536 "plastid" evidence=IC

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 68/184 (36%), Positives = 96/184 (52%)

Query:     1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXX 60
             ++IFA +  V+S +PNF+ +S +S+ AAVMS  YS+I    S+ K    G H        
Sbjct:   157 IMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHK----GVHPDVDYSPR 212

Query:    61 XXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTT 118
                DV    KV+    A+GDVAFAYA   V++EIQ T+ S+P  P    M R   V    
Sbjct:   213 ASTDVG---KVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIV 269

Query:   119 TTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 178
               + Y     +GY  FGN    N L      +P WL+  AN  + +H+IG+YQ+F  P+F
Sbjct:   270 VAICYFPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVF 327

Query:   179 GFVE 182
               +E
Sbjct:   328 DMLE 331

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92934	AAP6_ARATH	No assigned EC number	0.7715	0.9554	0.6237	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	6e-68

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  217 bits (554), Expect = 6e-68
 Identities = 93/301 (30%), Positives = 142/301 (47%), Gaps = 25/301 (8%)

Query: 1   MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 60
           +IIF  I I LS IPN   LS LS++AAV S  Y  I +       +             
Sbjct: 130 IIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAELGVLTAQ-------GV 181

Query: 61  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTT 120
             +    + K+ R F AIG + FA+    VL+ IQ+T+KS P + K+M +     +   T
Sbjct: 182 GSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSKFKAMTKVLLTAIIIVT 240

Query: 121 LFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGF 180
           + YI+ G++GYLAFGN+  GN L         WL+D AN  + +HL+ +Y +   PI   
Sbjct: 241 VLYILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVLHLLLSYPLQAFPIRQI 298

Query: 181 VEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240
           VE    ++    K                     R+V R+  V+++ ++A+  PF  DF+
Sbjct: 299 VENLLFRKGASGKHNPK-------------SKLLRVVIRSGLVVITYLIAISVPFLGDFL 345

Query: 241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLK-ILIWSCFIVSLVALVGSVQGLI 299
            L+GA S  PLT   P   ++   K ++ S   +W   IL   C ++ L+ +   V GLI
Sbjct: 346 SLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLI 405

Query: 300 Q 300
            
Sbjct: 406 I 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.96
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.69
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.13
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.74
PRK10483	414	tryptophan permease; Provisional	98.68
PRK09664	415	tryptophan permease TnaB; Provisional	98.52
PRK15132	403	tyrosine transporter TyrP; Provisional	98.48
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.03
PRK10655	438	potE putrescine transporter; Provisional	97.92
PRK13629	443	threonine/serine transporter TdcC; Provisional	97.91
PRK11021	410	putative transporter; Provisional	97.9
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.87
PRK10746	461	putative transport protein YifK; Provisional	97.85
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.84
PRK10249	458	phenylalanine transporter; Provisional	97.82
PRK15049	499	L-asparagine permease; Provisional	97.82
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.79
PRK10644	445	arginine:agmatin antiporter; Provisional	97.78
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.74
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.73
TIGR00913	478	2A0310 amino acid permease (yeast).	97.71
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.68
PRK10238	456	aromatic amino acid transporter; Provisional	97.67
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.64
TIGR00911	501	2A0308 L-type amino acid transporter.	97.63
TIGR00909	429	2A0306 amino acid transporter.	97.58
PRK11387	471	S-methylmethionine transporter; Provisional	97.57
PRK10580	457	proY putative proline-specific permease; Provision	97.54
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.5
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.47
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.47
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.46
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.45
PRK15238	496	inner membrane transporter YjeM; Provisional	97.45
PRK10836	489	lysine transporter; Provisional	97.35
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.31
COG0531	466	PotE Amino acid transporters [Amino acid transport	96.92
TIGR00930	953	2a30 K-Cl cotransporter.	96.81
KOG1287	479	consensus Amino acid transporters [Amino acid tran	96.68
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	96.12
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.03
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	95.61
KOG1289	550	consensus Amino acid transporters [Amino acid tran	95.5
TIGR00912	359	2A0309 spore germination protein (amino acid perme	93.21
KOG1286	554	consensus Amino acid transporters [Amino acid tran	92.46
COG0833	541	LysP Amino acid transporters [Amino acid transport	90.26
PRK11375	484	allantoin permease; Provisional	87.24
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	82.32
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	80.32
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	80.14

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-43  Score=326.47  Aligned_cols=261  Identities=20%  Similarity=0.304  Sum_probs=226.5

Q ss_pred             CchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHH
Q 021335            1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGD   80 (314)
Q Consensus         1 ~li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi   80 (314)
                      |++..++.+|++++||+|+|+++|++|++.++    +.++++.++.+++.+...+.+.         ..+..+...++|+
T Consensus       183 i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~----~g~~ii~~y~~~~~~~~~~~~~---------~~~~~~~~lf~Gt  249 (449)
T KOG1304|consen  183 ILIQLPPLLLLNLIRNLKILSPFSLFANVFIL----VGLAIIMYYLVQDLPPTSDLPA---------VTGWSGLPLFFGT  249 (449)
T ss_pred             HHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHH----HHHHHHHHHHHhccCCcccccc---------ccchhhhHHHHHH
Confidence            35567888999999999999999999999887    5777777888776542222221         2234477789999


Q ss_pred             HHHhccCcchhHhHHhhhccCCccchhhh---hHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHH
Q 021335           81 VAFAYAFSTVLVEIQDTLKSSPPENKSMK---RATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDF  157 (314)
Q Consensus        81 ~~faf~~~~~~~~i~~~m~~p~~~~~~~~---~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~  157 (314)
                      .+|||+|+++++|++++||+|    ++|.   +++..+|.+++++|+.+|++||++|||++++.|+.|+|+   +|+.+.
T Consensus       250 aifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~---~~l~~~  322 (449)
T KOG1304|consen  250 AIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ---EILSQT  322 (449)
T ss_pred             HHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc---cHHHHH
Confidence            999999999999999999999    8999   999999999999999999999999999999999999995   589999


Q ss_pred             HHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchH
Q 021335          158 ANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFN  237 (314)
Q Consensus       158 ~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~  237 (314)
                      +++++++.+..+||++++|..+.+|+++.++..++                 ++++....+|..+++++..+|..+|+++
T Consensus       323 Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA~~iPnL~  385 (449)
T KOG1304|consen  323 VKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIAVAVPNLA  385 (449)
T ss_pred             HHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHHHHCCcHH
Confidence            99999999999999999999999999876543211                 1247788899999999999999999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHHhCCCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021335          238 DFVGLIGAASFWPLTVYFPVEMYIARTKIRR---FSFTWVWLKILIWSCFIVSLVALVGSVQGL  298 (314)
Q Consensus       238 ~vlslvGs~~~~~l~filP~l~~l~~~~~~~---~~~~~~~~~~i~~~g~~~~v~gt~~si~~i  298 (314)
                      .++||+||++++.+.+++|+++|++.++++.   ..++++.+..++++|++.++.|||.|+.++
T Consensus       386 ~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  386 LFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             hhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            9999999999999999999999999986544   245666777899999999999999999864

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-40  Score=310.28  Aligned_cols=271  Identities=40%  Similarity=0.681  Sum_probs=234.0

Q ss_pred             CchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHH
Q 021335            1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGD   80 (314)
Q Consensus         1 ~li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi   80 (314)
                      |++++++.+|++|+||++.++++|..|+++++.|..+.++.++..+.+....+...+..      .+.+.   .++++|+
T Consensus       166 ~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~------~~~~~---~f~a~g~  236 (437)
T KOG1303|consen  166 IIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL------GTIPT---VFTALGI  236 (437)
T ss_pred             hhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC------CCCcc---hhhhhhh
Confidence            57899999999999999999999999999999988888888777665543222111110      00111   1899999


Q ss_pred             HHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHH
Q 021335           81 VAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANA  160 (314)
Q Consensus        81 ~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~  160 (314)
                      +.|+|+||.++||||++||+|    ++|+|++..++.+++.+|+.+++.||++|||+++++++.|++  +|.|+...+++
T Consensus       237 iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani  310 (437)
T KOG1303|consen  237 IAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANI  310 (437)
T ss_pred             eeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHH
Confidence            999999999999999999999    679999999999999999999999999999999999999996  35789999999


Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchHHHH
Q 021335          161 CIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV  240 (314)
Q Consensus       161 ~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~~vl  240 (314)
                      ++.+|++.+|+++.+|+.+.+|++...++++  + .            ++..++|.+.|+.+++.+.++|+.+|+|++++
T Consensus       311 ~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~-~------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~  375 (437)
T KOG1303|consen  311 LIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--F-K------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLL  375 (437)
T ss_pred             HHHHHHhhhhhhhhcchHHHHHHHhccCCcc--c-c------------ccccceeeehhhHHHHHHHHHHHhccccHhHH
Confidence            9999999999999999999999987643221  0 0            02347899999999999999999999999999


Q ss_pred             HHhhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 021335          241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKIL-IWSCFIVSLVALVGSVQGLIQS  301 (314)
Q Consensus       241 slvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~i-~~~g~~~~v~gt~~si~~ii~~  301 (314)
                      +++||+...++++++|+++|++.+|+++...+|++++.+ .++|+++++....++++.++.+
T Consensus       376 ~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  376 SLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999888888899988888 7999999999999999888753

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=3e-40  Score=316.45  Aligned_cols=271  Identities=15%  Similarity=0.227  Sum_probs=208.7

Q ss_pred             chhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhh-cCCCCccccccccccccCCc----hhhHHHHHH
Q 021335            2 IIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVI-GDGPHATTLTGTTVGVDVSA----SEKVWRAFQ   76 (314)
Q Consensus         2 li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   76 (314)
                      +++.++++||+++|++++|+++|.+|+++++..    ++.++++.. ++.+.  ..++.+.+.+...    .+...+++.
T Consensus       187 ~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~----vi~ivi~~~~~~~~~--~~~~~~~~~~~~~~~~~f~~~~~~~~  260 (467)
T PTZ00206        187 LMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYL----VIVIVVHSCMNGLPE--NIKNVSVGKDDNAEIILFNSGNRAIE  260 (467)
T ss_pred             ehhhhHhhhcccccchHHHHHHHHHHHHHHHHH----HhhhhhhhhcccCcc--cccccccCCCCCCceEEecCchHHHh
Confidence            456788999999999999999999999876532    222222222 22111  1111111110000    111236789


Q ss_pred             HHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHH
Q 021335           77 AIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVD  156 (314)
Q Consensus        77 ~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~  156 (314)
                      ++|+++|||.||.+.+|+|+|||+|  +.+||.++...++.+++++|..+|++||++||++++++++.|+++.+ +....
T Consensus       261 algi~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-~~~~~  337 (467)
T PTZ00206        261 GLGVFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-EPAIM  337 (467)
T ss_pred             hhhHHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-Cchhh
Confidence            9999999999999999999999997  45889999999999999999999999999999999999999994322 34567


Q ss_pred             HHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccch
Q 021335          157 FANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFF  236 (314)
Q Consensus       157 ~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~  236 (314)
                      ++++++.+.++.+||++.+|+|+.+++.+..  +.+         +.+       .+++...+..+++++.++|+.+|++
T Consensus       338 v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~--~~~---------~~~-------~~~~~~~~~~l~~~~l~iAi~vP~l  399 (467)
T PTZ00206        338 VGFVGVLVKLFVSYALLGMACRNALYDVIGW--DAR---------KVA-------FWKHCIAVVTLSVVMLLCGLFIPKI  399 (467)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHhCC--Ccc---------cCc-------hhhHHHHHHHHHHHHHHHHhccCCH
Confidence            8889999999999999999999999887532  111         111       2556566777777889999999999


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHh---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021335          237 NDFVGLIGAASFWPLTVYFPVEMYIART---KIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI  299 (314)
Q Consensus       237 ~~vlslvGs~~~~~l~filP~l~~l~~~---~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii  299 (314)
                      +.+++|+||++++.++|++|+++|++..   +++.+.++|+.++.++++|++.+++|||+|+++.+
T Consensus       400 ~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        400 NTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            9999999999999999999999999853   23334445666788999999999999999999876

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=1.9e-38  Score=303.22  Aligned_cols=274  Identities=18%  Similarity=0.173  Sum_probs=213.7

Q ss_pred             CchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHH
Q 021335            1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGD   80 (314)
Q Consensus         1 ~li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi   80 (314)
                      +++++++.+|++++|++|+++++|.+|..+++.+...+++..+.+.  ++      ++++.    ....+....+.++++
T Consensus       174 ~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~--~~------~~~~~----~~~~~~~~~f~~~~~  241 (473)
T PLN03074        174 TYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHG--QV------EGVKH----SGPTKLVLYFTGATN  241 (473)
T ss_pred             EeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CC------CCCCC----CCchhHHHHHHHHHH
Confidence            3678899999999999999999999998876543222222222211  11      11111    011245567788899


Q ss_pred             HHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCC--cccccccCcCCchhHHHHH
Q 021335           81 VAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP--GNFLTGFGFYEPFWLVDFA  158 (314)
Q Consensus        81 ~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~--~~il~~l~~~~~~~~~~~~  158 (314)
                      ++|+|+||.++|||++|||+|    ++|+++...+...++..|+.+|+.||++|||+++  ++.+.|+|.+  . ...++
T Consensus       242 i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~--~-~~~~~  314 (473)
T PLN03074        242 ILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS--G-WRDAA  314 (473)
T ss_pred             HHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc--h-HHHHH
Confidence            999999999999999999999    8899999999999999999999999999999975  4567778842  2 36889


Q ss_pred             HHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchHH
Q 021335          159 NACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFND  238 (314)
Q Consensus       159 ~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~~  238 (314)
                      ++++.++++.+|+++++|+.+..|+.....  +    .             +....|+.+|+.+++.++++|+.+|+|++
T Consensus       315 ~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~----~-------------k~~~~r~~~R~~lv~~~~~iA~~IP~fg~  375 (473)
T PLN03074        315 VILMLIHQFITFGFACTPLYFVWEKAIGVH--D----T-------------KSICLRALARLPVVVPIWFLAIIFPFFGP  375 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhccc--c----c-------------ccHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence            999999999999999999999888764321  1    0             12367889999999999999999999999


Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHhCCC-------------cchhhH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Q 021335          239 FVGLIGAASFWPLTVYFPVEMYIARTKIR-------------RFSFTW--VWLKILIWS-CFIVSLVALVGSVQGLIQSL  302 (314)
Q Consensus       239 vlslvGs~~~~~l~filP~l~~l~~~~~~-------------~~~~~~--~~~~~i~~~-g~~~~v~gt~~si~~ii~~~  302 (314)
                      ++||+||++++.++|++|+++|++.++++             .+.++|  +.+..++++ |++..+.|+|+|+.++++++
T Consensus       376 llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~  455 (473)
T PLN03074        376 INSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQI  455 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhh
Confidence            99999999999999999999999876432             112222  445566654 55556899999999999999


Q ss_pred             cccccccccc
Q 021335          303 KTYKPFQAVQ  312 (314)
Q Consensus       303 ~~~~~f~~~~  312 (314)
                      ++++.|++|+
T Consensus       456 ~~~~~f~~~~  465 (473)
T PLN03074        456 DTFGLFAKCY  465 (473)
T ss_pred             hhhhhhhhhc
Confidence            9977666553

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=8.2e-37  Score=288.80  Aligned_cols=275  Identities=27%  Similarity=0.377  Sum_probs=211.3

Q ss_pred             chhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHHH
Q 021335            2 IIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDV   81 (314)
Q Consensus         2 li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   81 (314)
                      ++++++++|++++|++++|+++|.+|+++.+.+    +...++........+  .++.+.. +.....+.++.+.++|++
T Consensus       129 ~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~i~  201 (409)
T PF01490_consen  129 IIFALIVLPLSFLKNLKSLRYLSILGLFSIFYF----IVIVVIYIISYGPGE--PSGVPSP-PVWPFISFSGFFSAFGII  201 (409)
T ss_pred             cccccccccccccchhhHHHHHhhhhhhcccee----eeeecceeeeeeccc--ccccccc-cccccchhhHHHHhhhhh
Confidence            567889999999999999999999999877631    111111111111100  0011000 011234567899999999


Q ss_pred             HHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHHH
Q 021335           82 AFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANAC  161 (314)
Q Consensus        82 ~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~~  161 (314)
                      +|||.||.+++|+++|||+|++. +|++++...++.+++++|..+|..||++||+++++++++|+|++  ++...+++++
T Consensus       202 ~faf~~~~~~~~i~~~m~~~~~~-~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~--~~~~~i~~~~  278 (409)
T PF01490_consen  202 IFAFSCHPNLPPIQSEMKDPSKF-KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND--DVLIIIARIL  278 (409)
T ss_pred             hhhhhcccccceeeeeccCCccc-cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc--cccccccccc
Confidence            99999999999999999998311 35669999999999999999999999999999999999999964  3678999999


Q ss_pred             HHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchHHHHH
Q 021335          162 IAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVG  241 (314)
Q Consensus       162 ~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~~vls  241 (314)
                      +.++++.+||++.+|.++.+|+.+.++...++  +. ..      .+...+++|..+|+.++++++++|..+|+++++++
T Consensus       279 ~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~--~~-~~------~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~  349 (409)
T PF01490_consen  279 LVISLLLSYPLQLFPARNSLENLLFKRAASSR--DS-PK------NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIIS  349 (409)
T ss_pred             chhhhhhccccccchhHhhhhhheeccccccc--cc-cc------cccccceeeeeeecchhhhhhhhhhhccchhhhhc
Confidence            99999999999999999999998754200000  00 00      01123478899999999999999999999999999


Q ss_pred             HhhhhhhhhHHHHHHHHHHHHHhCCCcchhhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 021335          242 LIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV-----WLKILIWSCFIVSLVALVGSV  295 (314)
Q Consensus       242 lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~-----~~~~i~~~g~~~~v~gt~~si  295 (314)
                      ++||++++.++|++|+++|++.++++++..+|+     ..+.++++|++.++.|+|+++
T Consensus       350 l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  350 LVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             ccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            999999999999999999999987665433332     235567889999999999875

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-31  Score=250.19  Aligned_cols=272  Identities=19%  Similarity=0.258  Sum_probs=216.5

Q ss_pred             chhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHHH
Q 021335            2 IIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDV   81 (314)
Q Consensus         2 li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   81 (314)
                      ++...+..||++.|++.+|++.|.++.++++.    .+.+++++.+..+...   ++.++  +.......++.+.+++++
T Consensus       133 l~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~----fv~~vv~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~pi~  203 (411)
T KOG1305|consen  133 LVLLFIILPLSLLKNLDSLKYTSALSLASVVY----FVVLVVYKYFQGPCAL---GRLSY--LVPNLSSFSSLFYALPIF  203 (411)
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHhccccc---CCccc--ccCCcchhhhhhhhhhhh
Confidence            45678899999999999999999999998873    3334444444432101   11111  011122236889999999


Q ss_pred             HHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchh----HHHH
Q 021335           82 AFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFW----LVDF  157 (314)
Q Consensus        82 ~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~----~~~~  157 (314)
                      +|||.||.|+.|+++|||+|  +++++.++...+...++++|..+|.+||+.|||++.+|++.++|.+....    ....
T Consensus       204 ~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~  281 (411)
T KOG1305|consen  204 VFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLC  281 (411)
T ss_pred             heeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHH
Confidence            99999999999999999999  78899999999999999999999999999999999999999998744321    3578


Q ss_pred             HHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchH
Q 021335          158 ANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFN  237 (314)
Q Consensus       158 ~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~  237 (314)
                      ++..+.++.+.++|+..+|+|..+++.+....++    ++           +....++..++..++..+.+.|+.+|+++
T Consensus       282 vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~----~~-----------~~s~~r~~~itl~ll~~~~l~ai~~p~i~  346 (411)
T KOG1305|consen  282 VRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPG----LT-----------SFSGKRHFVITLLLLIFTFLLAIFVPSIG  346 (411)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCC----CC-----------CccceehhHHHHHHHHHHHHHHHHhccHH
Confidence            9999999999999999999999988776432221    10           11124566788899999999999999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021335          238 DFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQS  301 (314)
Q Consensus       238 ~vlslvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii~~  301 (314)
                      ++++++||++++.++|++|+++|++.+|+  +.++....+...++|+...+.|+..-+.++..+
T Consensus       347 ~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  347 TIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             HHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999886  333444566777888889999999888887664

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.96  E-value=1.9e-31  Score=234.65  Aligned_cols=282  Identities=15%  Similarity=0.203  Sum_probs=223.2

Q ss_pred             CchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHH
Q 021335            1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGD   80 (314)
Q Consensus         1 ~li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi   80 (314)
                      |++.+..++|-+++|+||-.+.+|++.+++-+...++++   .|......  +...+.+.+      ..+..+.+.++|+
T Consensus       242 m~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v---~YCLs~~~--dW~wskv~F------sidi~~fPisvG~  310 (524)
T KOG4303|consen  242 MMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMV---LYCLSFVS--DWSWSKVTF------SIDINTFPISVGM  310 (524)
T ss_pred             hhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh--hccceeEEE------EEEcccCceEEEE
Confidence            678889999999999999999999999998874333322   23222221  122333333      2234456688999


Q ss_pred             HHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHH
Q 021335           81 VAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANA  160 (314)
Q Consensus        81 ~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~  160 (314)
                      ++|+|..|..+|+.+..|++|    .+|+..+.++-+...++-..+|..||++||+.+++.|++|+|..   ....++++
T Consensus       311 iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q---sfk~~VN~  383 (524)
T KOG4303|consen  311 IVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ---SFKILVNL  383 (524)
T ss_pred             EEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc---chhhhhhH
Confidence            999999999999999999999    78999999999999999999999999999999999999999952   25778999


Q ss_pred             HHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchHHHH
Q 021335          161 CIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV  240 (314)
Q Consensus       161 ~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~~vl  240 (314)
                      .+++..+.|||+-...+.+.+|+.+.+-.|+..|..- ++      +..+.+.+.+..|..+++.+.+.|+.+|+|..+|
T Consensus       384 fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpsc-ys------~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LM  456 (524)
T KOG4303|consen  384 FLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSC-YS------PDGSLKEWGLTLRIILVVFTLLMAISVPHFVELM  456 (524)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCcee-eC------CCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHH
Confidence            9999999999997777778788765443333222110 00      0011123445689999999999999999999999


Q ss_pred             HHhhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021335          241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKP  307 (314)
Q Consensus       241 slvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii~~~~~~~~  307 (314)
                      +|+|+++++.++|+.|++||+++.++.....+......+++.|...++.|.|.|..++++.+....+
T Consensus       457 Gl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~  523 (524)
T KOG4303|consen  457 GLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS  523 (524)
T ss_pred             HhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence            9999999999999999999999998765555555677788899999999999999999999876544

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.69  E-value=2.8e-15  Score=141.76  Aligned_cols=262  Identities=15%  Similarity=0.153  Sum_probs=170.3

Q ss_pred             chhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHHH
Q 021335            2 IIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDV   81 (314)
Q Consensus         2 li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   81 (314)
                      +++..++.++++.++...++..|.++..+...    .+..+.+....-+  ...+...+    ............++|++
T Consensus       133 lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~----~~~l~~~~~~~~~--~~~l~~~~----~~~~~~~~~~~~~ipv~  202 (415)
T COG0814         133 LIFALVLAFLSWLGTLAVLKITSLLVFGKVIY----LVLLVVYLIPHWN--PANLFALP----SASQSFWKYLLLAIPVF  202 (415)
T ss_pred             HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH----HHHHHHHHhcccC--HHHHhccc----ccchhhHHHHHHHhhHH
Confidence            46788888999999999999999999887652    2222222221111  11111110    00012334677999999


Q ss_pred             HHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHHH
Q 021335           82 AFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANAC  161 (314)
Q Consensus        82 ~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~~  161 (314)
                      .|+|+||++++++++|||+++  +++.+|+...+..+..++|..++.++|..+|+.+.++++++.++++  . ....+..
T Consensus       203 vfsF~~h~~i~si~~~~~~~~--~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~--~-~l~~~~~  277 (415)
T COG0814         203 VFSFGFHGNIPSLVNYMRKNS--KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI--S-LLSALAG  277 (415)
T ss_pred             HhhhhCCccchHHHHHhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH--H-HHHHHHH
Confidence            999999999999999999883  3349999999999999999999999999999999999999998532  1 1222222


Q ss_pred             HHHHHHHhhhhcccchH--------------HHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhh--hhHHHHHHH
Q 021335          162 IAVHLIGAYQVFCQPIF--------------GFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRL--VWRTAYVIV  225 (314)
Q Consensus       162 ~~i~~~~sypl~~~p~~--------------~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~v~~  225 (314)
                      .......+++.+..|.+              |..++...+  .++    +      +   +++..+.+.  ......++.
T Consensus       278 ~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~----~------~---~r~~~~~~~~~~~~i~~l~~  342 (415)
T COG0814         278 VINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNS----K------P---GRKKTGLLTFLPPLIFALLY  342 (415)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccC----c------c---cchhhhhhhHHHHHHHHHHH
Confidence            22233344444433433              333333221  010    0      0   011122222  234455566


Q ss_pred             HHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 021335          226 SAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVG  293 (314)
Q Consensus       226 ~~~iA~~iP~~~~vlslvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~  293 (314)
                      ....+...|..+.+++.+|+.....+.++.|...+.+....+....++.....++++|+..++.-.++
T Consensus       343 ~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~  410 (415)
T COG0814         343 PWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLA  410 (415)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHH
Confidence            77888889999999999999999999999999888776543322222234555666776666555444

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.13  E-value=3.8e-09  Score=99.27  Aligned_cols=169  Identities=11%  Similarity=0.092  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCc----------cc
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPG----------NF  142 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~----------~i  142 (314)
                      +.+.+++...++|++|.+++++.++++++   +||.+|+...+..+++++|+++........+.+.-.          ..
T Consensus       179 ~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l  255 (381)
T TIGR00837       179 YILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGL  255 (381)
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHH
Confidence            56788899999999999999999999865   278999999999999999998765544444333211          11


Q ss_pred             ccccCc-CCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHH
Q 021335          143 LTGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTA  221 (314)
Q Consensus       143 l~~l~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  221 (314)
                      .+.+.. .+..+...++.....+.++.|+.-.....+|...+.+++  .+    ++               .+|.....+
T Consensus       256 ~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~--~~----~~---------------~~~~~~~~~  314 (381)
T TIGR00837       256 VNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKF--DD----SK---------------KGRFKTGLL  314 (381)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--Cc----cc---------------CCCchhhhh
Confidence            111110 012345667777888888999987766777776655432  11    00               113344556


Q ss_pred             HHHHHHHHHHhccchH-HHHHHhhhhhhhhHHHHHHHHHHHHHhCC
Q 021335          222 YVIVSAVLAMIFPFFN-DFVGLIGAASFWPLTVYFPVEMYIARTKI  266 (314)
Q Consensus       222 ~v~~~~~iA~~iP~~~-~vlslvGs~~~~~l~filP~l~~l~~~~~  266 (314)
                      ..+...++|.+.|+.. ..++..| +.++.+.+++|++++++.||+
T Consensus       315 ~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       315 TFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             hHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            6677889999999876 9999999 888999999999999998864

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.74  E-value=1.8e-06  Score=81.48  Aligned_cols=171  Identities=17%  Similarity=0.282  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhh--hhhhh---------hccCCCC
Q 021335           70 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC--GVMGY---------LAFGNDA  138 (314)
Q Consensus        70 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~--g~~gY---------~~fG~~v  138 (314)
                      +....+.++++..++|+.|.++|++.+.+++.   +||.+|++..+..+..++|++.  .+.|-         ..-|+++
T Consensus       182 ~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~  258 (394)
T PF03222_consen  182 DWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNV  258 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCh
Confidence            33466799999999999999999999999854   3789999999988888888764  34441         1222222


Q ss_pred             Cc--ccccccCcCCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhh
Q 021335          139 PG--NFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRL  216 (314)
Q Consensus       139 ~~--~il~~l~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (314)
                      .+  ..+.+..  +..+...++.+.-.+.+.+||-=.....+|.+++.++.  +++                   ...|.
T Consensus       259 ~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r~  315 (394)
T PF03222_consen  259 SALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGRL  315 (394)
T ss_pred             HHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccchH
Confidence            11  1222222  22456677788888899999965555667777766532  111                   01233


Q ss_pred             hhHHHHHHHHHHHHHhcc-chHHHHHHhhhhhhhhHHHHHHHHHHHHHhCCC
Q 021335          217 VWRTAYVIVSAVLAMIFP-FFNDFVGLIGAASFWPLTVYFPVEMYIARTKIR  267 (314)
Q Consensus       217 ~~r~~~v~~~~~iA~~iP-~~~~vlslvGs~~~~~l~filP~l~~l~~~~~~  267 (314)
                      ....+..+...++|...| .|...+++.| ...+.+..++|+++.+|.|+++
T Consensus       316 ~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~  366 (394)
T PF03222_consen  316 KTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK  366 (394)
T ss_pred             HHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence            334455566788899888 5788999999 8999999999999999998643

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=98.68  E-value=3.6e-06  Score=79.33  Aligned_cols=168  Identities=11%  Similarity=0.118  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHh--hhhhhhhc---------cCCCCCcc
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM--CGVMGYLA---------FGNDAPGN  141 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~--~g~~gY~~---------fG~~v~~~  141 (314)
                      ..+.+++++.++|+.|.++|++.+.+++.   .||.+|++..+..+..++|++  ..+.|-..         -|+++ +.
T Consensus       193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~  268 (414)
T PRK10483        193 YLLMTLPFCLASFGYHGNVPSLMKYYGKD---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DV  268 (414)
T ss_pred             HHHHHHHHHHhhccCCCcchHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HH
Confidence            46689999999999999999999998753   368999999999999999987  23333221         23332 11


Q ss_pred             cccccCc-CCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHH
Q 021335          142 FLTGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRT  220 (314)
Q Consensus       142 il~~l~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  220 (314)
                      .++.+.. .+..+...+......+.+.+||-=.....+|.+++.++.  +++                   ...|...-.
T Consensus       269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~--~~~-------------------~~~r~~~~~  327 (414)
T PRK10483        269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF--DDS-------------------AMGRFKTAL  327 (414)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeeh
Confidence            1122221 112355566777778888999865555677777766542  111                   012222334


Q ss_pred             HHHHHHHHHHHhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhCC
Q 021335          221 AYVIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYFPVEMYIARTKI  266 (314)
Q Consensus       221 ~~v~~~~~iA~~iP~-~~~vlslvGs~~~~~l~filP~l~~l~~~~~  266 (314)
                      +..+...++|...|+ |-..++..|.. +..+.-++|+++-++.||+
T Consensus       328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            677788999999996 78899999976 6788889999999999975

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.52  E-value=2.2e-05  Score=74.06  Aligned_cols=169  Identities=14%  Similarity=0.140  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHh--hhhhhh---------hccCCCCCcc
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM--CGVMGY---------LAFGNDAPGN  141 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~--~g~~gY---------~~fG~~v~~~  141 (314)
                      ..+.+++++.++|+.|.++|++.+.+++.   .+|.+|.+..+..+..++|++  ..+.|-         ..-|+++++.
T Consensus       194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l  270 (415)
T PRK09664        194 YIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL  270 (415)
T ss_pred             HHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence            46689999999999999999999998754   367888888888888888865  233331         2233343331


Q ss_pred             cccccCcCCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHH
Q 021335          142 FLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTA  221 (314)
Q Consensus       142 il~~l~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  221 (314)
                      +..-....+..+...+..+...+.+.+||-=.....+|.+...++.  +++                   ...|...-.+
T Consensus       271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~~-------------------~~~r~~~~~l  329 (415)
T PRK09664        271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI--DNS-------------------HGGRFKTVLL  329 (415)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeehh
Confidence            1111111123466777888888889999965555677777765532  111                   0123233346


Q ss_pred             HHHHHHHHHHhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhCC
Q 021335          222 YVIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYFPVEMYIARTKI  266 (314)
Q Consensus       222 ~v~~~~~iA~~iP~-~~~vlslvGs~~~~~l~filP~l~~l~~~~~  266 (314)
                      ..+...++|...|+ |-..++..|.. .+.+.-++|+++-+|.||+
T Consensus       330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            67788999999996 88899999996 6688889999999999975

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.48  E-value=5.3e-06  Score=78.23  Aligned_cols=169  Identities=12%  Similarity=0.165  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC-----CC-----cccc
Q 021335           74 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND-----AP-----GNFL  143 (314)
Q Consensus        74 ~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-----v~-----~~il  143 (314)
                      .+.+++++.++|+.|.++|++.+.+++.   .+|.+|++..+..+..++|+..=......-+.+     .+     ++++
T Consensus       183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l  259 (403)
T PRK15132        183 ALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL  259 (403)
T ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence            6789999999999999999999999754   378999999999999888886422222221211     11     1233


Q ss_pred             cccCc-CCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHH
Q 021335          144 TGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAY  222 (314)
Q Consensus       144 ~~l~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  222 (314)
                      +.+.. .+..+...++.....+.+.+||-=.....+|.+.+.++.  +++                   ...|.....+.
T Consensus       260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~--~~~-------------------~~~r~~~~~l~  318 (403)
T PRK15132        260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR--RNT-------------------VGGRLQTGLIT  318 (403)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--Ccc-------------------ccCCchhehhh
Confidence            33321 112456677777778888888865554667777665432  110                   01244445677


Q ss_pred             HHHHHHHHHhcc-chHHHHHHhhhhhhhhHHHHHHHHHHHHHhCCC
Q 021335          223 VIVSAVLAMIFP-FFNDFVGLIGAASFWPLTVYFPVEMYIARTKIR  267 (314)
Q Consensus       223 v~~~~~iA~~iP-~~~~vlslvGs~~~~~l~filP~l~~l~~~~~~  267 (314)
                      .+...++|+..| -|...+++.|. ..+.+.+++|+++-+|.++++
T Consensus       319 flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~  363 (403)
T PRK15132        319 FLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN  363 (403)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence            788899999998 56778888886 578999999999999998643

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.03  E-value=0.0011  Score=64.24  Aligned_cols=49  Identities=12%  Similarity=0.095  Sum_probs=41.8

Q ss_pred             HHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335           80 DVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY  131 (314)
Q Consensus        80 i~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY  131 (314)
                      .+.|+|.|-......-+|+|||+   |+.+|++..+..++.++|.+....-.
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~  250 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIA  250 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999994   68999999999999999987655433

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK10655 potE putrescine transporter; Provisional

Probab=97.92  E-value=0.0026  Score=60.87  Aligned_cols=55  Identities=13%  Similarity=0.113  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG  130 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g  130 (314)
                      +...++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|++.....
T Consensus       190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~  244 (438)
T PRK10655        190 AVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVI  244 (438)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence            556778889999999999999999999994   6899999999999999999865543

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=97.91  E-value=0.00035  Score=66.23  Aligned_cols=200  Identities=10%  Similarity=0.058  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccC-C----cc--chhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCC-----Cc
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSS-P----PE--NKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA-----PG  140 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p-~----~~--~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v-----~~  140 (314)
                      ..+.++++..++|+.|+++++....+|+. .    ++  .+|.+|++..+..+..++|+..-...-..-+++.     ++
T Consensus       210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q  289 (443)
T PRK13629        210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ  289 (443)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            46789999999999999999999885433 1    12  5788999999988888888775433333322221     12


Q ss_pred             --ccccc----cCcC-Cc-----hhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCc
Q 021335          141 --NFLTG----FGFY-EP-----FWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGV  208 (314)
Q Consensus       141 --~il~~----l~~~-~~-----~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (314)
                        +++..    ++.. +.     .+...+..+...+.+..||-=.....+|.++....+...+.  .++    +.     
T Consensus       290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~--~~~----~~-----  358 (443)
T PRK13629        290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKG--DKT----KV-----  358 (443)
T ss_pred             CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccc----cc-----
Confidence              21222    2210 00     23455566666678888886555578888887763200010  000    01     


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhCC-CcchhhHHHHHHHHHHHHHH
Q 021335          209 YHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKI-RRFSFTWVWLKILIWSCFIV  286 (314)
Q Consensus       209 ~~~~~~~~~~r~~~v~~~~~iA~~iP~~~~vlslvGs~~~~~l~filP~l~~l~~~~~-~~~~~~~~~~~~i~~~g~~~  286 (314)
                       +.+..+.....++.+.+.+.|+.=|++-.++.-+|+--...+.|++|...-.|.-.- +.+.  +..++.+.+.|++.
T Consensus       359 -~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~--~~~n~fv~~~Gl~~  434 (443)
T PRK13629        359 -SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRG--RLDNVFVTVIGLLT  434 (443)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCC--CchhHHHHHHHHHH
Confidence             112344455666777788888888999999997777778899999999887766421 1221  11355556666544

>PRK11021 putative transporter; Provisional

Probab=97.90  E-value=0.0049  Score=58.53  Aligned_cols=56  Identities=20%  Similarity=0.377  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335           71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  129 (314)
Q Consensus        71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  129 (314)
                      ..+...++....|+|.|-......-+|+|||+   |+.+|.+..+..++.++|.+....
T Consensus       176 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        176 WSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            34667889999999999999999999999994   689999999999999999987654

>TIGR00814 stp serine transporter

Probab=97.87  E-value=0.0001  Score=69.59  Aligned_cols=180  Identities=9%  Similarity=0.078  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhh----ccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCC-----Ccc-
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTL----KSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA-----PGN-  141 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m----~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v-----~~~-  141 (314)
                      .+...+++...+||.+|.++++...+.    ++|+.+.+|.+|+...+..+..++|+..-...-...+.+.     +++ 
T Consensus       186 ~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~ni  265 (397)
T TIGR00814       186 KTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNI  265 (397)
T ss_pred             HHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCc
Confidence            467799999999999999999997444    3232235788999999999888888775444333333332     122 


Q ss_pred             -cccccCc-CCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhH
Q 021335          142 -FLTGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWR  219 (314)
Q Consensus       142 -il~~l~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  219 (314)
                       .+..+.+ .+..+...+....-.+.+..|+--....++|.+++.+.+..+.+   ++    +.      +++..+....
T Consensus       266 s~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~---~~----~~------~~~~~~~~~~  332 (397)
T TIGR00814       266 SILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMK---GK----KI------NIRKLNRAIA  332 (397)
T ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc---cc----cc------CHHHHHHHHH
Confidence             1221111 11224455555666677888886655578888888763211110   00    01      1123344455


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Q 021335          220 TAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIART  264 (314)
Q Consensus       220 ~~~v~~~~~iA~~iP~~~~vlslvGs~~~~~l~filP~l~~l~~~  264 (314)
                      .++.+.+...|+.=|++-++++-+|+--...+.|++|...-.|.-
T Consensus       333 ~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~  377 (397)
T TIGR00814       333 IFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP  377 (397)
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH
Confidence            566677888888889999999977777778999999998877654

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK10746 putative transport protein YifK; Provisional

Probab=97.85  E-value=0.0063  Score=58.80  Aligned_cols=55  Identities=13%  Similarity=0.082  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  129 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  129 (314)
                      .+...++....|+|.|--.+...-+|+|||+   |+.+|+...+......+|......
T Consensus       200 ~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~~~  254 (461)
T PRK10746        200 KGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAIFV  254 (461)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566889999999999999999999999994   689999988888888888875443

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.84  E-value=0.0049  Score=59.62  Aligned_cols=58  Identities=10%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhcc
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAF  134 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~f  134 (314)
                      +...++....|+|.|-.....+-+|.|++    |+.+|.+..+...+.++|.++....+...
T Consensus       196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~  253 (468)
T TIGR03810       196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIM  253 (468)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            45578888999999999888888888875    78999999999999999999877655443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10249 phenylalanine transporter; Provisional

Probab=97.82  E-value=0.0057  Score=59.05  Aligned_cols=54  Identities=19%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  129 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  129 (314)
                      +...++....|+|.|-......-+|+|||+   |+.+|++..+......+|......
T Consensus       210 ~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~  263 (458)
T PRK10249        210 GLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVV  263 (458)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888999999999999999999999994   689999999998899999875443

>PRK15049 L-asparagine permease; Provisional

Probab=97.82  E-value=0.0039  Score=60.87  Aligned_cols=56  Identities=21%  Similarity=0.208  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG  130 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g  130 (314)
                      .+.+.++...+|+|.|-......-+|+|||+   |+.+|++..++....++|+......
T Consensus       220 ~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~  275 (499)
T PRK15049        220 LPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLL  275 (499)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667789999999999999999999994   5799999988888888888765543

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.79  E-value=0.005  Score=59.01  Aligned_cols=58  Identities=14%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335           71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY  131 (314)
Q Consensus        71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY  131 (314)
                      ..+...++....|+|.|-......-+|+|||+   |+.+|+...+...+.++|++......
T Consensus       186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~  243 (435)
T PRK10435        186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVIS  243 (435)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777889999999999999999999999994   68999999999999999998776544

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.78  E-value=0.0059  Score=58.66  Aligned_cols=54  Identities=11%  Similarity=0.157  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  129 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  129 (314)
                      +...++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|.++...
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~  245 (445)
T PRK10644        192 AIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTA  245 (445)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence            455677889999999999999999999994   689999999999999999987665

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.74  E-value=0.0055  Score=58.92  Aligned_cols=55  Identities=15%  Similarity=0.175  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  129 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  129 (314)
                      .+...++....|+|.|-......-+|+|||+   |+.+|++..+...+..+|++....
T Consensus       181 ~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        181 GAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677899999999999999999999999993   679999998999899999886554

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.73  E-value=0.0061  Score=60.33  Aligned_cols=55  Identities=7%  Similarity=0.141  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  129 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  129 (314)
                      .+.+.+.....|+|.|-..+...-+|+|||+   |+.+|.+..++.+++++|.++...
T Consensus       231 ~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~  285 (557)
T TIGR00906       231 TGVLSGAATCFFAFIGFDAIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA  285 (557)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            4677888999999999999999999999994   679999999999999999987654

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.71  E-value=0.014  Score=56.53  Aligned_cols=55  Identities=16%  Similarity=0.177  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhh
Q 021335           71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV  128 (314)
Q Consensus        71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~  128 (314)
                      ..+...++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|++...
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667888889999999999999999999994   68999999999999999998654

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.68  E-value=0.0078  Score=57.77  Aligned_cols=55  Identities=15%  Similarity=0.256  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  129 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  129 (314)
                      .+...++....|+|.|-......-+|+|||+   |+.+|++..++.++.++|.+....
T Consensus       195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        195 MALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHH
Confidence            3566788899999999999999999999994   689999999999999999886654

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.67  E-value=0.0074  Score=58.21  Aligned_cols=51  Identities=14%  Similarity=0.172  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhh
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC  126 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~  126 (314)
                      +...+++...|+|.|--.....-+|+|||+   |+.+|++..+.....+.|+..
T Consensus       201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        201 GLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence            555778889999999999999999999994   579999887777777777654

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.64  E-value=0.0048  Score=58.67  Aligned_cols=59  Identities=17%  Similarity=0.300  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335           74 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND  137 (314)
Q Consensus        74 ~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~  137 (314)
                      .+.+++...|+|.|-......-+|+||     |+.+|.+..+..++.++|.+....-....+++
T Consensus       190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~  248 (426)
T PF13520_consen  190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDD  248 (426)
T ss_dssp             HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred             hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccch
Confidence            568889999999999999999999774     58999999999999999999866655555443

...

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.63  E-value=0.0068  Score=59.17  Aligned_cols=57  Identities=14%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 021335           71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG  130 (314)
Q Consensus        71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g  130 (314)
                      ..+...++....|+|.|-.....+-+|+|||+   |+.+|++..+..++.++|++....-
T Consensus       234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~  290 (501)
T TIGR00911       234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAY  290 (501)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667788999999999999999999999994   6899999999999999999985543

>TIGR00909 2A0306 amino acid transporter

Probab=97.58  E-value=0.035  Score=52.92  Aligned_cols=57  Identities=16%  Similarity=0.212  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY  131 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY  131 (314)
                      .+...++....++|.|.......-+|+|||+   |+.+|.+..+..++.++|++......
T Consensus       195 ~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       195 GGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567888899999999999999999999993   67899999999999999998765443

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.57  E-value=0.018  Score=55.73  Aligned_cols=56  Identities=11%  Similarity=0.158  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG  130 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g  130 (314)
                      .+.+.++....|+|.|-......-+|+|||+   |+.+|++..+...+..+|+......
T Consensus       206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        206 LPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888999999999999999999994   6899999999998899998876543

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.54  E-value=0.037  Score=53.33  Aligned_cols=53  Identities=21%  Similarity=0.179  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhh
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV  128 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~  128 (314)
                      +.+.++....|+|.|-......-+|+|||+   |+.+|++..+......+|.....
T Consensus       200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~~  252 (457)
T PRK10580        200 GMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTLF  252 (457)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            566888899999999999999999999993   57899988877777778876643

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.50  E-value=0.026  Score=54.26  Aligned_cols=56  Identities=18%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY  131 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY  131 (314)
                      +...++....|+|.|-......-+|+|||+   |+.+|++..+......+|++......
T Consensus       202 ~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       202 AVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             HHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            577889999999999999999999999994   68999998888888888887644333

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.47  E-value=0.035  Score=53.83  Aligned_cols=56  Identities=13%  Similarity=0.140  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY  131 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY  131 (314)
                      .+...++....|+|.|-.....+-+|+|| +   |+.+|.+..+..++.++|++......
T Consensus       199 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       199 SQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVLGTLGALVIYILITLLSL  254 (473)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667888899999999999999999998 4   78999999999999999988765533

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.47  E-value=0.033  Score=53.90  Aligned_cols=56  Identities=18%  Similarity=0.193  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY  131 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY  131 (314)
                      +.+.++....|+|.|-......-+|+|||+   |+.+|+...+.....++|.+....-+
T Consensus       212 ~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        212 GFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            577889999999999999999999999993   57999997777777778876655443

>TIGR00908 2A0305 ethanolamine permease

Probab=97.46  E-value=0.023  Score=54.54  Aligned_cols=54  Identities=13%  Similarity=0.032  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhh
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV  128 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~  128 (314)
                      .+.+.++....|+|.|.......-+|+|||+   |+.+|++..+..++..+|...-.
T Consensus       191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       191 VGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence            3667888888999999999999999999994   57999999998888888876643

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.45  E-value=0.038  Score=54.13  Aligned_cols=50  Identities=10%  Similarity=0.007  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhh
Q 021335           75 FQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCG  127 (314)
Q Consensus        75 ~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g  127 (314)
                      ...+....|+|.|--.....-+|+|||+   |+++|++..+..++.++|.+..
T Consensus       197 ~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       197 LVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence            3344456899999999999999999994   6899999999988888887644

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.45  E-value=0.034  Score=54.25  Aligned_cols=54  Identities=11%  Similarity=0.130  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhh
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV  128 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~  128 (314)
                      .+.+.++....|+|.|-......-+|+|||+   |+.+|++..+...+..+|.+...
T Consensus       211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~  264 (496)
T PRK15238        211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIF  264 (496)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHH
Confidence            3456677778999999999999999999994   68999999999999999987644

>PRK10836 lysine transporter; Provisional

Probab=97.35  E-value=0.068  Score=52.04  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG  130 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g  130 (314)
                      +.+.+.....|+|.|-......-+|+|||+   |+.+|++..++..+..+|+.....-
T Consensus       206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~  260 (489)
T PRK10836        206 AMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILII  260 (489)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555566799999999999999999994   6899999999999999999875543

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.31  E-value=0.04  Score=53.45  Aligned_cols=52  Identities=8%  Similarity=-0.003  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhh
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC  126 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~  126 (314)
                      ++...++....|+|.|-......-+|+|||+   |+.+|++..+..+..+++.+.
T Consensus       217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~  268 (482)
T TIGR00907       217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCF  268 (482)
T ss_pred             hhhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHH
Confidence            3455566667899999999999999999994   689999998887766554443

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=96.92  E-value=0.16  Score=48.73  Aligned_cols=61  Identities=15%  Similarity=0.224  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCC
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN  136 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~  136 (314)
                      +...++....++|.|-......-+|+|||.   |+.+|.+..++..+..+|+.....-....++
T Consensus       202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         202 GILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            577888999999999999999999999983   5689999999999999999988776666655

>TIGR00930 2a30 K-Cl cotransporter

Probab=96.81  E-value=0.34  Score=51.04  Aligned_cols=53  Identities=23%  Similarity=0.234  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335           74 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  129 (314)
Q Consensus        74 ~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  129 (314)
                      ++..++++..||.|-.....+-.|+|+|+   +..++....+..+++++|+++.+.
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55677888889999999999999999994   689999999999999999998753

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.68  E-value=0.12  Score=49.68  Aligned_cols=237  Identities=13%  Similarity=0.118  Sum_probs=122.6

Q ss_pred             HHHHHHHhcCCCCCchhHHHHHHHHHHHH---HHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHHH
Q 021335            5 ACIQIVLSQIPNFHKLSWLSILAAVMSFA---YSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDV   81 (314)
Q Consensus         5 ~~i~~pL~~~r~l~~L~~~S~~~~~~~~~---~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   81 (314)
                      +.+++-+.-..|..++++.+.+=.+.++.   ...++.+.+++....+..++.+.++  +..   .+.+.-+...++=.-
T Consensus       139 a~~~l~~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~--f~g---~~~~~g~i~lafysg  213 (479)
T KOG1287|consen  139 AAALLVLLTLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE--FEG---SDTDVGNIALAFYSG  213 (479)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccc--ccc---CcCchHHHHHHHHHh
Confidence            44455555566677777666544443332   1122333333433332211111000  110   011223445666667


Q ss_pred             HHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccC------c-CCchhH
Q 021335           82 AFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFG------F-YEPFWL  154 (314)
Q Consensus        82 ~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~------~-~~~~~~  154 (314)
                      .|||.|=..+--+-+|+|||.   |.+++++..++.+++++|+++=+..+..-   ..+.++.+-.      + .-+.+.
T Consensus       214 lfa~~GWd~lN~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~S~aVav~Fa~~~~G~~~  287 (479)
T KOG1287|consen  214 LFAFSGWDYLNYVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTVL---SPDEILSSDAVAVTFADRILGVFA  287 (479)
T ss_pred             hhcccCchhhccchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEec---CHHHhcccchHHHHHHHHhccchH
Confidence            899999999999999999994   78999999999999999999866554332   1222222211      0 001121


Q ss_pred             HHHHHHHHHHHHHHhhhhcccc-hHHHHHHHhh-hhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHh
Q 021335          155 VDFANACIAVHLIGAYQVFCQP-IFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMI  232 (314)
Q Consensus       155 ~~~~~~~~~i~~~~sypl~~~p-~~~~ie~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~  232 (314)
                       ..+.++..++.+.+.--.++- .|.. ...-. ...|+. + +.-        ..++. -.  ....+......++...
T Consensus       288 -~~ip~~ValS~~G~~n~~ifs~SR~~-~~~areG~LP~~-~-s~i--------~~~~~-TP--~~allf~~~~~i~~~~  352 (479)
T KOG1287|consen  288 -WAIPFSVALSLIGSLNSVIFSSSRLF-YAGAREGHLPAF-F-SMI--------SVRRF-TP--RPALLFSGLLSIVLSL  352 (479)
T ss_pred             -HHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHccCccHH-H-Hhh--------cCCCC-CC--hHHHHHHHHHHHHHHH
Confidence             334444444444443211111 1111 10000 001110 0 000        00000 01  1123333444455555


Q ss_pred             ccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhCCC
Q 021335          233 FPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIR  267 (314)
Q Consensus       233 iP~~~~vlslvGs~~~~~l~filP~l~~l~~~~~~  267 (314)
                      +.|++.+++.++=.......+.+=+++|+|.++++
T Consensus       353 ~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~  387 (479)
T KOG1287|consen  353 IGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP  387 (479)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            67999999999988888899999999999998764

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=96.12  E-value=0.21  Score=47.40  Aligned_cols=179  Identities=13%  Similarity=0.180  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHH-----HHHhhhhhhhhccCCCCCccccc
Q 021335           70 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTL-----FYIMCGVMGYLAFGNDAPGNFLT  144 (314)
Q Consensus        70 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~-----~y~~~g~~gY~~fG~~v~~~il~  144 (314)
                      ...+.+.++-+.+|||+|.-.+=---.|-|||+   |..+|+...-..=..+     +..++.+.-+-.++++.++ ...
T Consensus       201 G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP-FV~  276 (462)
T COG1113         201 GFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP-FVT  276 (462)
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCc-HHH
Confidence            344788999999999999999999999999995   4566665443333333     3445566666666554333 222


Q ss_pred             ccCcCCchhHHHHHHHHHHHHHHHhh--hhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHH
Q 021335          145 GFGFYEPFWLVDFANACIAVHLIGAY--QVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAY  222 (314)
Q Consensus       145 ~l~~~~~~~~~~~~~~~~~i~~~~sy--pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  222 (314)
                      -+..-+-.+...+.|..+....+.++  .++.  .-+.+..+-.+....+.+ .+-+...+|        +.-+......
T Consensus       277 ~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys--tsRmL~~la~~g~APk~~-~klsk~gVP--------~~ai~~s~~~  345 (462)
T COG1113         277 VFSLIGIPFAAGIMNFVVLTAALSALNSGLYS--TSRMLYSLAKQGDAPKAF-AKLSKRGVP--------VNAILLSAVV  345 (462)
T ss_pred             HHHHcCCcccccceeEEEeechhhcccccccc--cchHHHHHhhcCcccHhH-hhccccCCC--------HHHHHHHHHH
Confidence            22110001122223322222222222  2221  111222111100000000 111111222        4445677777


Q ss_pred             HHHHHHHHHhccchHHHHHHhhhhhhh--hHHHHHHHHHHHHHhC
Q 021335          223 VIVSAVLAMIFPFFNDFVGLIGAASFW--PLTVYFPVEMYIARTK  265 (314)
Q Consensus       223 v~~~~~iA~~iP~~~~vlslvGs~~~~--~l~filP~l~~l~~~~  265 (314)
                      .++..++-+..|  +.++.++-+.++.  .....+=.+.|+|.+|
T Consensus       346 ~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk  388 (462)
T COG1113         346 LLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK  388 (462)
T ss_pred             HHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888999999  5555555544443  3344455677888886

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.03  E-value=1.6  Score=42.29  Aligned_cols=54  Identities=9%  Similarity=-0.077  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335           73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  129 (314)
Q Consensus        73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  129 (314)
                      ....+.....|+|.|-.....+-+|+|||+   |+.+|.+..+..+...+|.++-+.
T Consensus       214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~  267 (475)
T TIGR03428       214 AFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMILG  267 (475)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            344566667899999999999999999994   689999999988887666554443

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=95.61  E-value=0.042  Score=53.26  Aligned_cols=64  Identities=23%  Similarity=0.255  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335           71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND  137 (314)
Q Consensus        71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~  137 (314)
                      ..+.+.++....++|.|-......-+|.|||+   |+.+|....+.....++|.......=...+.+
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~  262 (478)
T PF00324_consen  199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVPYD  262 (478)
T ss_pred             hhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence            44788999999999999999999999999994   68999999999999999998766544444433

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=95.50  E-value=1.2  Score=43.30  Aligned_cols=66  Identities=9%  Similarity=0.075  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 021335           70 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA  138 (314)
Q Consensus        70 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v  138 (314)
                      ..|+...++-.-.....|--....+-+|-||++   ++-+|.+..+..+..++-.++-+.-..+-+++.
T Consensus       250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~  315 (550)
T KOG1289|consen  250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL  315 (550)
T ss_pred             chHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            556777777777788888889999999999984   567888777777766665555544444555443

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=93.21  E-value=5.1  Score=37.09  Aligned_cols=56  Identities=20%  Similarity=0.354  Sum_probs=46.5

Q ss_pred             HHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 021335           79 GDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA  138 (314)
Q Consensus        79 gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v  138 (314)
                      ....++|.+.....-...++|+|    |+.+|....+..++..+|...-......+|.+.
T Consensus       186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~  241 (359)
T TIGR00912       186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV  241 (359)
T ss_pred             HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence            36778898888888888999987    789999999999999999987777777776553

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=92.46  E-value=4.4  Score=40.12  Aligned_cols=178  Identities=16%  Similarity=0.140  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh-hhhccCCC--CCcccccccC
Q 021335           71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM-GYLAFGND--APGNFLTGFG  147 (314)
Q Consensus        71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~-gY~~fG~~--v~~~il~~l~  147 (314)
                      +.+.+..+-...|+|.|--.+-..-+|-|||.   |..++++..++..++.+|++..+. |-..=.++  ..++....=|
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp  307 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP  307 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence            44677888899999999999999999999994   789999999999999999988763 44332223  2222211111


Q ss_pred             c------CCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHH
Q 021335          148 F------YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTA  221 (314)
Q Consensus       148 ~------~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  221 (314)
                      .      ..-..+-.++++...+.++.+---.+.|.-+.+..+-+..+-.+ +..+     +.      ++.+.+....+
T Consensus       308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk-~f~~-----v~------~~g~P~~a~~v  375 (554)
T KOG1286|consen  308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPK-FFAR-----VD------RRGVPLVAVLV  375 (554)
T ss_pred             HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcch-HHhh-----cC------CCCCchhHHHH
Confidence            1      00112222566666666655543333344444444322111000 0000     00      01111122222


Q ss_pred             HHHHHHHHHHhcc-----chHHHHHHhhhhhhhhHHHHHHHHHHHHHhC
Q 021335          222 YVIVSAVLAMIFP-----FFNDFVGLIGAASFWPLTVYFPVEMYIARTK  265 (314)
Q Consensus       222 ~v~~~~~iA~~iP-----~~~~vlslvGs~~~~~l~filP~l~~l~~~~  265 (314)
                      ..+...+.++...     .++.++++.|--  +.+++.+=++.|++.|+
T Consensus       376 ~~~~~~l~~~~~~~~~~~~f~~L~~~~si~--tl~~w~~i~~~~i~~R~  422 (554)
T KOG1286|consen  376 SGLFGALAALNFSLGAATVFNWLVNLSSIG--TLFAWTLVALSHLRFRY  422 (554)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHhHH--HHHHHHHHHHHHeeeee
Confidence            3333444444443     358888887654  57777777888887763

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=90.26  E-value=20  Score=35.24  Aligned_cols=53  Identities=17%  Similarity=0.144  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhh
Q 021335           71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC  126 (314)
Q Consensus        71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~  126 (314)
                      +.+....+-+..|+|.|.-.+----.|-+||+   |..+|+++..+-=..++|++.
T Consensus       233 f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~s  285 (541)
T COG0833         233 FKGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYILS  285 (541)
T ss_pred             hHHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHHH
Confidence            44666778888899999999988899999994   678888888777777777653

>PRK11375 allantoin permease; Provisional

Probab=87.24  E-value=31  Score=33.67  Aligned_cols=48  Identities=10%  Similarity=0.242  Sum_probs=25.1

Q ss_pred             CcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh----hhccCCCC
Q 021335           87 FSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG----YLAFGNDA  138 (314)
Q Consensus        87 ~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g----Y~~fG~~v  138 (314)
                      .-.+.++.-+-.|++    ++-.+.-..++.+...+...+|+..    ...||+..
T Consensus       243 ~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~  294 (484)
T PRK11375        243 PAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADT  294 (484)
T ss_pred             HHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            344778888888776    4444444445544444443333322    34556543

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=82.32  E-value=12  Score=35.60  Aligned_cols=51  Identities=18%  Similarity=0.198  Sum_probs=38.7

Q ss_pred             hhhhHHHHHHHHHHHHHhcc-chHHHHHHhhhhhhhhHHHHHHHHHHHHHhC
Q 021335          215 RLVWRTAYVIVSAVLAMIFP-FFNDFVGLIGAASFWPLTVYFPVEMYIARTK  265 (314)
Q Consensus       215 ~~~~r~~~v~~~~~iA~~iP-~~~~vlslvGs~~~~~l~filP~l~~l~~~~  265 (314)
                      |..........+.+.++..| -+....+..|++.....+-++|++++++-++
T Consensus       324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~  375 (415)
T COG0814         324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRK  375 (415)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555556677777777 6677788889888899999999999998764

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=80.32  E-value=53  Score=30.94  Aligned_cols=44  Identities=14%  Similarity=0.221  Sum_probs=30.3

Q ss_pred             chhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCC
Q 021335           89 TVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN  136 (314)
Q Consensus        89 ~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~  136 (314)
                      ...++..+-.|+|    +|..+....+..+...+...+|...-.+.++
T Consensus       190 ~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~  233 (386)
T TIGR02358       190 PLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ  233 (386)
T ss_pred             HHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3467777777766    5666666677777777777788766666554

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=80.14  E-value=57  Score=31.25  Aligned_cols=64  Identities=17%  Similarity=0.200  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHH-HhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhc----cCCCC
Q 021335           71 VWRAFQAIGDVA-FAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA----FGNDA  138 (314)
Q Consensus        71 ~~~~~~~~gi~~-faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~----fG~~v  138 (314)
                      .+....+++..+ +.-..-.+.++.-+-+|+|    ++-.+....++.........+|..+-..    +|+..
T Consensus       206 ~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~  274 (442)
T TIGR00800       206 AWAFLYALSLVIGSFATWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY  274 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            344444444422 2224555788999999887    4444445666666666666677666554    77653

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.36
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.08
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.84
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	84.15

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.36  E-value=1.9e-05  Score=74.03  Aligned_cols=64  Identities=11%  Similarity=0.069  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335           71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND  137 (314)
Q Consensus        71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~  137 (314)
                      ..+.+.++....|+|.|.......-+|+|||+   |+.+|....+..++.++|...........+.+
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            34677888999999999999999999999993   67999999999999999999877666555543

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.08  E-value=0.0003  Score=67.01  Aligned_cols=60  Identities=5%  Similarity=0.015  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335           75 FQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND  137 (314)
Q Consensus        75 ~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~  137 (314)
                      +.++...+|+|.|.......-+|+|||+   |+.+|.+..++.++.++|++..+.-....+++
T Consensus       204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          204 LVVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            3456778999999999999999999994   67999999999999999999877666666554

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.84  E-value=0.00059  Score=63.73  Aligned_cols=61  Identities=11%  Similarity=0.132  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccC
Q 021335           72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG  135 (314)
Q Consensus        72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG  135 (314)
                      .+.+.++....|+|.|.......-+|+|||+   |+.+|.+..+..++.++|...........+
T Consensus       188 ~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          188 SGMIFASAIFFLSYMGFGVITNASEHIENPK---KNVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4677888888999999999999999999992   569999999999999999987765544443

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=84.15  E-value=25  Score=32.99  Aligned_cols=30  Identities=23%  Similarity=0.576  Sum_probs=19.2

Q ss_pred             chhHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 021335            2 IIFACIQIVLSQIPNFHKLSWLSILAAVMSF   32 (314)
Q Consensus         2 li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~   32 (314)
                      ++++++.+++.+. -++.++++..++....+
T Consensus       147 ~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~  176 (501)
T 2jln_A          147 VIFGAIQVVTTFY-GITFIRWMNVFASPVLL  176 (501)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            3456666777744 47888877777655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00