Citrus Sinensis ID: 021340

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQVH
cccccHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccc
ccccccHHHHHHHHHHcccccEEEEEEEcccHHHHcEEEEEcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccc
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATnhverpakEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRAlrevdptfHEEVINygrsrshmlnmahfkddsspnawdysAWVRSYALFLEERLECFRVLKydietdrprtkdldtaELLEHLPALQLLLFRVlgcqpqgaaVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSldigrgerfikieqppaSFLQAMEEYVkeaprgstfrkdqvh
MSGGGTQKSFRKalgalkdtttvslakvnsdykeLDIAIVKatnhverpakekHIRAVFAsisatrpraDVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLkydietdrprtkdlDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEaprgstfrkdqvh
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEllehlpalqlllFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQVH
***************ALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQ****************************
************ALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAM*******************
*********FRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVK**************
*******KSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEA************
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MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQVH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
Q9LHS0 544 Putative clathrin assembl yes no 0.968 0.558 0.819 1e-150
Q9LVD8 591 Putative clathrin assembl no no 0.971 0.516 0.649 1e-119
Q8VYT2 601 Putative clathrin assembl no no 0.968 0.505 0.620 1e-116
Q8LBH2 571 Putative clathrin assembl no no 0.952 0.523 0.631 1e-114
P94017 692 Putative clathrin assembl no no 0.952 0.432 0.612 1e-112
Q9SA65 599 Putative clathrin assembl no no 0.933 0.489 0.382 2e-53
Q8GX47 611 Putative clathrin assembl no no 0.936 0.481 0.341 6e-49
Q9ZVN6 653 Clathrin coat assembly pr no no 0.923 0.444 0.328 2e-48
Q8S9J8 635 Probable clathrin assembl no no 0.926 0.458 0.319 7e-47
Q8LF20 653 Putative clathrin assembl no no 0.464 0.223 0.463 8e-34
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1 Back     alignment and function desciption
 Score =  530 bits (1365), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 249/304 (81%), Positives = 278/304 (91%)

Query: 10  FRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRA 69
            R+ LGA+KDTTTVSLAKVNSDYKELDIAIVKATNHVERP+KE++IRA+F +ISATRPRA
Sbjct: 11  LRRYLGAIKDTTTVSLAKVNSDYKELDIAIVKATNHVERPSKERYIRAIFMAISATRPRA 70

Query: 70  DVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHF 129
           DVAYCIHALA+RLS+THNWAVALKTLIVIHRALREVD TFHEEVINY RSRSHMLNM+HF
Sbjct: 71  DVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINYSRSRSHMLNMSHF 130

Query: 130 KDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQL 189
           KDDS PNAW YSAWVR YALFLEERLECFRVLKYD+E D PRTKDLDT +LLE LPALQ 
Sbjct: 131 KDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLDTPDLLEQLPALQE 190

Query: 190 LLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKA 249
           LLFRVL CQP+GAAV N +IQLALS+V SESTKIYQA++DG  NLVDKFF+MQR+DA+KA
Sbjct: 191 LLFRVLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFFDMQRNDAVKA 250

Query: 250 LDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFR 309
           LD+YRRA +QA RLSEF+EVCKS+++GRGERFIKIEQPP SFLQAMEEYVKEAP  +  +
Sbjct: 251 LDMYRRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYVKEAPLAAGVK 310

Query: 310 KDQV 313
           K+QV
Sbjct: 311 KEQV 314

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1 Back     alignment and function description
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 Back     alignment and function description
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2 Back     alignment and function description
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2 Back     alignment and function description
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1 Back     alignment and function description
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1 Back     alignment and function description
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 Back     alignment and function description
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
449465625 554 PREDICTED: putative clathrin assembly pr 0.996 0.564 0.920 1e-171
255582313 548 clathrin assembly protein, putative [Ric 0.993 0.569 0.920 1e-171
297739011 505 unnamed protein product [Vitis vinifera] 0.993 0.617 0.894 1e-168
359484228 555 PREDICTED: putative clathrin assembly pr 0.993 0.562 0.894 1e-168
356548512 546 PREDICTED: putative clathrin assembly pr 0.984 0.565 0.893 1e-167
357478253 545 hypothetical protein MTR_4g115420 [Medic 0.984 0.566 0.889 1e-166
356562967 548 PREDICTED: putative clathrin assembly pr 0.980 0.562 0.892 1e-166
388505726 548 unknown [Lotus japonicus] 0.984 0.563 0.858 1e-164
224087080 548 predicted protein [Populus trichocarpa] 0.984 0.563 0.864 1e-161
147854711 588 hypothetical protein VITISV_037564 [Viti 0.974 0.520 0.865 1e-159
>gi|449465625|ref|XP_004150528.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Cucumis sativus] gi|449526473|ref|XP_004170238.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 288/313 (92%), Positives = 302/313 (96%)

Query: 1   MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFA 60
           MSGGGTQ SFRKALGALKDTTTVSLAKVNSDYKELDIAIVK+TNHVERPAKEKHIRA+FA
Sbjct: 1   MSGGGTQNSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKSTNHVERPAKEKHIRAIFA 60

Query: 61  SISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSR 120
           +ISATRPRADVAYCIHALA+RLSKTHNWAVALKTL+VIHRALREVDPTFHEE+INYGR R
Sbjct: 61  AISATRPRADVAYCIHALARRLSKTHNWAVALKTLVVIHRALREVDPTFHEELINYGRRR 120

Query: 121 SHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEL 180
           +HMLN++HFKDDSS NAWDYSAWVRSYALFLEERLECFRVLKYD+ETDR RTKDLDTAEL
Sbjct: 121 NHMLNLSHFKDDSSANAWDYSAWVRSYALFLEERLECFRVLKYDVETDRARTKDLDTAEL 180

Query: 181 LEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFE 240
           LE LPALQ LL+RVLGCQPQGAAVHNFVIQLALSLVASES KIYQAISDGTVNLVDKFFE
Sbjct: 181 LEQLPALQELLYRVLGCQPQGAAVHNFVIQLALSLVASESVKIYQAISDGTVNLVDKFFE 240

Query: 241 MQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVK 300
           MQR DALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGE+FIKIEQPP SFLQAMEEYV+
Sbjct: 241 MQRQDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGEKFIKIEQPPPSFLQAMEEYVR 300

Query: 301 EAPRGSTFRKDQV 313
           EAPR ST RK+QV
Sbjct: 301 EAPRVSTVRKEQV 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255582313|ref|XP_002531947.1| clathrin assembly protein, putative [Ricinus communis] gi|223528393|gb|EEF30429.1| clathrin assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297739011|emb|CBI28256.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484228|ref|XP_002285448.2| PREDICTED: putative clathrin assembly protein At5g35200 isoform 1 [Vitis vinifera] gi|359484230|ref|XP_003633084.1| PREDICTED: putative clathrin assembly protein At5g35200 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356548512|ref|XP_003542645.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Glycine max] Back     alignment and taxonomy information
>gi|357478253|ref|XP_003609412.1| hypothetical protein MTR_4g115420 [Medicago truncatula] gi|355510467|gb|AES91609.1| hypothetical protein MTR_4g115420 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356562967|ref|XP_003549739.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Glycine max] Back     alignment and taxonomy information
>gi|388505726|gb|AFK40929.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224087080|ref|XP_002308057.1| predicted protein [Populus trichocarpa] gi|222854033|gb|EEE91580.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147854711|emb|CAN83852.1| hypothetical protein VITISV_037564 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
TAIR|locus:2182432 544 AT5G35200 [Arabidopsis thalian 0.990 0.571 0.784 1.2e-129
TAIR|locus:2165615 591 AT5G57200 [Arabidopsis thalian 0.971 0.516 0.618 6.2e-101
TAIR|locus:2120780 601 AT4G25940 [Arabidopsis thalian 0.519 0.271 0.707 1.6e-100
TAIR|locus:2049587 571 AT2G01600 [Arabidopsis thalian 0.952 0.523 0.602 2.5e-97
TAIR|locus:2006727 692 AT1G14910 [Arabidopsis thalian 0.952 0.432 0.583 2.3e-94
TAIR|locus:2007524 599 AT1G03050 [Arabidopsis thalian 0.484 0.253 0.490 1.1e-49
TAIR|locus:2040115 653 AT2G25430 [Arabidopsis thalian 0.464 0.223 0.463 2.2e-49
TAIR|locus:505006543 635 AT4G32285 [Arabidopsis thalian 0.464 0.229 0.429 6.7e-47
TAIR|locus:2132382 611 AT4G02650 [Arabidopsis thalian 0.474 0.243 0.464 1.1e-46
TAIR|locus:2205558 653 AT1G05020 [Arabidopsis thalian 0.525 0.252 0.382 5.6e-44
TAIR|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
 Identities = 244/311 (78%), Positives = 274/311 (88%)

Query:     3 GGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASI 62
             GGG+Q S R+ LGA+KDTTTVSLAKVNSDYKELDIAIVKATNHVERP+KE++IRA+F +I
Sbjct:     4 GGGSQSSLRRYLGAIKDTTTVSLAKVNSDYKELDIAIVKATNHVERPSKERYIRAIFMAI 63

Query:    63 SATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSH 122
             SATRPRADVAYCIHALA+RLS+THNWAVALKTLIVIHRALREVD TFHEEVINY RSRSH
Sbjct:    64 SATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINYSRSRSH 123

Query:   123 MLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEXXX 182
             MLNM+HFKDDS PNAW YSAWVR YALFLEERLECFRVLKYD+E D PRTKDLDT +   
Sbjct:   124 MLNMSHFKDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLDTPDLLE 183

Query:   183 XXXXXXXXXFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQ 242
                      FRVL CQP+GAAV N +IQLALS+V SESTKIYQA++DG  NLVDKFF+MQ
Sbjct:   184 QLPALQELLFRVLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFFDMQ 243

Query:   243 RHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEA 302
             R+DA+KALD+YRRA +QA RLSEF+EVCKS+++GRGERFIKIEQPP SFLQAMEEYVKEA
Sbjct:   244 RNDAVKALDMYRRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYVKEA 303

Query:   303 PRGSTFRKDQV 313
             P  +  +K+QV
Sbjct:   304 PLAAGVKKEQV 314
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005545 "1-phosphatidylinositol binding" evidence=IEA
GO:0030118 "clathrin coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=IEA
GO:0048268 "clathrin coat assembly" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007524 AT1G03050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040115 AT2G25430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132382 AT4G02650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205558 AT1G05020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LHS0CAP10_ARATHNo assigned EC number0.81900.96810.5588yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
pfam07651278 pfam07651, ANTH, ANTH domain 1e-101
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 6e-37
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 2e-32
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information 
 Score =  298 bits (764), Expect = e-101
 Identities = 114/282 (40%), Positives = 166/282 (58%), Gaps = 16/282 (5%)

Query: 32  YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVA 91
             +L++A+VKAT+H E P K+KH+R +   +  T   A VA    AL++RL  T NW VA
Sbjct: 1   DSDLEVAVVKATSHDEVPPKKKHVREI---LVGTSSPAKVAALFWALSRRLPLTRNWVVA 57

Query: 92  LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL 151
           LK LI++H+ LRE  P+  +E++   R  S +L ++ F DDS    WDY A++R+YA +L
Sbjct: 58  LKALILVHKLLREGHPSVLQELLRARRRISSLLRISSF-DDSMSLTWDYGAFIRAYAKYL 116

Query: 152 EERLECFRVLKYDIETDRPRTK------------DLDTAELLEHLPALQLLLFRVLGCQP 199
           +ERL+  R L  D   +R                 +   +LL+ +P LQ LL  +L C+P
Sbjct: 117 DERLDFHRKLPRDPTFERVEYGSLRAVGDPNSRYTMSMEDLLDIIPKLQKLLDALLKCKP 176

Query: 200 QGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQ 259
            G A+ N  I  AL L+  ES  +Y AI++G +NL++KFFEM + DA  AL IY+R   Q
Sbjct: 177 TGNALTNECIIAALILLIKESFGLYGAINEGIINLLEKFFEMSKPDADAALGIYKRFVSQ 236

Query: 260 AERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301
            ERL EFYEVCK+L   R     K+   P + L A+EE++++
Sbjct: 237 FERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLDALEEHLRD 278

AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats. Length = 278
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
KOG0251 491 consensus Clathrin assembly protein AP180 and rela 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 100.0
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.96
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.53
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 99.37
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.26
KOG2056336 consensus Equilibrative nucleoside transporter pro 98.92
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 98.48
KOG2057 499 consensus Predicted equilibrative nucleoside trans 98.14
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 96.02
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 96.01
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 96.0
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 95.96
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 95.86
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 95.58
cd03561133 VHS VHS domain family; The VHS domain is present i 95.36
KOG2199 462 consensus Signal transducing adaptor protein STAM/ 84.6
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-70  Score=534.05  Aligned_cols=288  Identities=47%  Similarity=0.817  Sum_probs=270.4

Q ss_pred             HHHhhhhcccchhhhhccCCCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHH
Q 021340           12 KALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVA   91 (314)
Q Consensus        12 ~~~g~~kd~~s~~~a~~~~~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~   91 (314)
                      ++.|++||++|+++|+|.+.++++++||+|||+|++.|||+|||+.|+.+|..++  +++++|+.+|.+|+.+|+||+||
T Consensus         1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA   78 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA   78 (491)
T ss_pred             CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence            4689999999999999998889999999999999999999999999999998874  68999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhccccccCC--
Q 021340           92 LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDR--  169 (314)
Q Consensus        92 ~K~LillH~llr~G~~~~~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~~~~~~~~d~~~~~--  169 (314)
                      +|+|||+|+||++|+++|.+++..    .++.|++++|.|++++.+|+|+.|||+|++||++|+.+|+.+++|++..+  
T Consensus        79 lKsLIliH~ll~~G~~~f~~~l~~----~~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~  154 (491)
T KOG0251|consen   79 LKALILIHRLLKEGDPSFEQELLS----RNLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG  154 (491)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHh----cccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence            999999999999999999877643    34789999999999888999999999999999999999999999987643  


Q ss_pred             ---CCCCCCC-hHHHHhhHHHHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 021340          170 ---PRTKDLD-TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHD  245 (314)
Q Consensus       170 ---~~~~~l~-~~~ll~~l~~lq~lid~ll~~~~~~~~~~n~~~~~al~lli~Ds~~lY~~~~~~v~~lLe~~fem~~~d  245 (314)
                         ...+++. ++.+|+.++.||.|||++++|+|.+.+.+|.++++||.+|++|+++||..+|+||++|||+||+|+++|
T Consensus       155 ~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~  234 (491)
T KOG0251|consen  155 KEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHD  234 (491)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence               3344444 778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCCCChhhHHHHHHHHHhCCCC
Q 021340          246 ALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRG  305 (314)
Q Consensus       246 a~~~l~iy~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~p~~~l~~Lee~l~~~~~~  305 (314)
                      |.++++||+||.+|+++|.+||++||++|+.++.+||+|+++|.+++++|||||++.+.+
T Consensus       235 a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~  294 (491)
T KOG0251|consen  235 AIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGG  294 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999999999999999999999999744

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
3zyk_A296 Structure Of Calm (Picalm) Anth Domain Length = 296 3e-22
1hf8_A289 Calm-N N-Terminal Domain Of Clathrin Assembly Lymph 4e-22
3zym_A310 Structure Of Calm (Picalm) In Complex With Vamp8 Le 2e-19
3zyl_A271 Structure Of A Truncated Calm (Picalm) Anth Domain 2e-19
1hx8_A299 Crystal Structure Of N-Terminal Domain Of Drosophil 8e-18
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 131/267 (49%), Gaps = 14/267 (5%)
Query: 38  AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
            + KAT H     K+KH+  +           ++     +L +R + + +W V  K+LI 
Sbjct: 32  TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLIT 88
Query: 98  IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLEC 157
            H  +       +E  I Y  SR+ + N+++F D S    +D S ++R Y+ +L E+   
Sbjct: 89  THHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVS 144
Query: 158 FRVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLA 212
           +R + +D  T   R  D     ++T +              +L        + N VI  A
Sbjct: 145 YRQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAA 203
Query: 213 LSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKS 272
             L+  ++ +++ A ++G +NL++K+F+M+++   + LDIY++   +  R+SEF +V + 
Sbjct: 204 FMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQ 263
Query: 273 LDIGRGERFIKIEQPPASFLQAMEEYV 299
           + I RG+    + Q P+S L A+E+++
Sbjct: 264 VGIDRGD-IPDLSQAPSSLLDALEQHL 289
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289 Back     alignment and structure
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310 Back     alignment and structure
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271 Back     alignment and structure
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180 Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 1e-85
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 4e-82
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 6e-82
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 5e-04
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
 Score =  257 bits (657), Expect = 1e-85
 Identities = 69/280 (24%), Positives = 138/280 (49%), Gaps = 15/280 (5%)

Query: 5   GTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISA 64
           G+      +  +L D  T +   V      +   + KAT H     K+KH+  +   I  
Sbjct: 1   GSPIGIHMSGQSLTDRITAAQHSVT--GSAVSKTVCKATTHEIMGPKKKHLDYL---IQC 55

Query: 65  T-RPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHM 123
           T     ++     +L +R + + +W V  K+LI  H  +   +  F    I Y  SR+ +
Sbjct: 56  TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHHLMVYGNERF----IQYLASRNTL 110

Query: 124 LNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP----RTKDLDTAE 179
            N+++F D S    +D S ++R Y+ +L E+   +R + +D    +       + ++T +
Sbjct: 111 FNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMNTEK 170

Query: 180 LLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFF 239
           LL+ +P +Q  +  +L        + N VI  A  L+  ++ +++ A ++G +NL++K+F
Sbjct: 171 LLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYF 230

Query: 240 EMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGE 279
           +M+++   + LDIY++   +  R+SEF +V + + I RG+
Sbjct: 231 DMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGD 270
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.67
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.64
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.47
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.46
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.8
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 96.27
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 96.18
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 96.17
3g2s_A149 C-terminal fragment of sortilin-related receptor; 96.16
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 96.11
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 95.71
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 95.7
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 95.64
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 95.04
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
Probab=100.00  E-value=7.7e-74  Score=532.83  Aligned_cols=278  Identities=24%  Similarity=0.438  Sum_probs=241.9

Q ss_pred             chhHHHHHHhhhh-cccchhhhhccCCCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhcc
Q 021340            6 TQKSFRKALGALK-DTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK   84 (314)
Q Consensus         6 ~~~~~~~~~g~~k-d~~s~~~a~~~~~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~   84 (314)
                      ++++||+++|++| |+++          +++++||+|||+|+++|||+|||++||.+||+++  +++++++|+|.+| ..
T Consensus         4 ~~~~~~~~~~a~k~~~~~----------~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R-~~   70 (299)
T 1hx8_A            4 AGQTINDRLLAARHSLAG----------QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIER-SQ   70 (299)
T ss_dssp             ----------------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHH-HT
T ss_pred             chHHHHHHHHHHhhccch----------hHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhh-cc
Confidence            3689999999999 8877          5677899999999999999999999999999874  5789999999999 46


Q ss_pred             CCcHHHHHHHHHHHHHHHhcCCcchHHHHHHhhhcCCCcccccccCCCCC-----------CCCCchhHHHHHHHHHHHH
Q 021340           85 THNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSS-----------PNAWDYSAWVRSYALFLEE  153 (314)
Q Consensus        85 t~~w~v~~K~LillH~llr~G~~~~~~~~~~~~~~~~~~l~l~~f~d~s~-----------~~~~~~~~~Ir~Y~~yL~~  153 (314)
                      ++||+|+||+||++|+|||+|||+|.+++    ++++++|++++|+|.++           +.+|+||.|||+|++||++
T Consensus        71 ~~~w~va~K~LivlH~llreG~~~~~~~l----~~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~  146 (299)
T 1hx8_A           71 NANWVVVYKSLITTHHLMAYGNERFMQYL----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNE  146 (299)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSCHHHHHHH----HHTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCHHHHHHH----HhCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence            89999999999999999999999987665    34667999999998764           2457899999999999999


Q ss_pred             HHHHhhhhccccccC-----CCCCCCCChHHHHhhHHHHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 021340          154 RLECFRVLKYDIETD-----RPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAIS  228 (314)
Q Consensus       154 rl~~~~~~~~d~~~~-----~~~~~~l~~~~ll~~l~~lq~lid~ll~~~~~~~~~~n~~~~~al~lli~Ds~~lY~~~~  228 (314)
                      |+.+|+..++|++..     .+++++++++++|+.++.+|+|||++++|+|.+.+.+|+|+++||++||+||++||+++|
T Consensus       147 r~~~f~~~~~d~~~~~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~  226 (299)
T 1hx8_A          147 KSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYN  226 (299)
T ss_dssp             HHHHHHHHSSCGGGC-----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCccccccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888888642     367899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCCCChhhHHHHHHHHHh
Q 021340          229 DGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE  301 (314)
Q Consensus       229 ~~v~~lLe~~fem~~~da~~~l~iy~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~p~~~l~~Lee~l~~  301 (314)
                      +||++|||+||+|+++||++||++|+||.+|+++|++||++|+++|+++ ++||+|+++||+|+++|||||++
T Consensus       227 ~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~  298 (299)
T 1hx8_A          227 DGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  298 (299)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999966 89999999999999999999986
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d1hx8a1133 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosop 4e-55
d1hf8a1132 a.7.8.2 (A:150-281) Clathrin assembly lymphoid mye 4e-55
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 2e-38
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 3e-38
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 4e-20
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  173 bits (441), Expect = 4e-55
 Identities = 36/130 (27%), Positives = 76/130 (58%), Gaps = 1/130 (0%)

Query: 170 PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISD 229
              + ++  +LL+ LP LQ  L  +L    Q   + N VI ++  L+  +  +++   +D
Sbjct: 2   GSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYND 61

Query: 230 GTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPA 289
           G +NL++K+F+M +  A  ALD+Y++   + +R+ EF +V +++ I +G+    + + P+
Sbjct: 62  GIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGD-IPDLTKAPS 120

Query: 290 SFLQAMEEYV 299
           S L A+E+++
Sbjct: 121 SLLDALEQHL 130
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.98
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.98
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.85
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 96.09
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 96.07
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 96.02
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 95.31
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 94.89
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6.3e-39  Score=260.25  Aligned_cols=131  Identities=27%  Similarity=0.512  Sum_probs=127.6

Q ss_pred             CCCCCCChHHHHhhHHHHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 021340          170 PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKA  249 (314)
Q Consensus       170 ~~~~~l~~~~ll~~l~~lq~lid~ll~~~~~~~~~~n~~~~~al~lli~Ds~~lY~~~~~~v~~lLe~~fem~~~da~~~  249 (314)
                      +.+++|+++++|+.++.+|+|+|++++|+|.+++++|+++++||.++++||++||..+|+||+||||+||+|+++||++|
T Consensus         2 ~~lr~m~~~~LL~~l~~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~a   81 (133)
T d1hx8a1           2 GSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDA   81 (133)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred             chhhcCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCCCChhhHHHHHHHHHh
Q 021340          250 LDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE  301 (314)
Q Consensus       250 l~iy~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~p~~~l~~Lee~l~~  301 (314)
                      |+||+||.+|+++|.+||++||++|+.+ .+||+++++|++++++||||+++
T Consensus        82 l~iyk~~~~q~e~L~~f~~~ck~~g~~r-~e~P~l~~~p~sll~~LEe~l~~  132 (133)
T d1hx8a1          82 LDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  132 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCccc-cCCCCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999876 69999999999999999999986
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure