Citrus Sinensis ID: 021344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MAIAAAAASSSSSLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIRIKSHLLSKCTLYLPLCSY
Secondary Structure (PSIPRED)
cHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEccccccccccccccccHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccccccEEEEEEcccccccccccHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHcccEEcccccccHHHccccccccccHHcccccEcccccccccccccEEEEEEcccccccccccHHHHHHHccHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHccccccccEEEEEccHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHEccHHHHHHcEEEcccccc
Coil and Loop (DISEMBL)
MAIAAAAassssslfpkypclsrnsprlpqslrfsstiravtlqpaksernqtlelegdlfscpicyeplirkgptgltlgaiyrsgfkcrkcdktysskdnyldLTVIsglkdytevkpastelfrspfVSFLYergwrqnfnrsgfpgpdeEFKMAQEYFKSaqggllvdvscgsglfsrkfaksgtysgvvaldFSENMLRQCYDFIKQDNTILTSNLALVRAdvcrlpfasgfvDAVHAgaalhcwpspsnaVAEISRILrsggvfvgttflrytsstsltgRVLREVMLIRIKSHLlskctlylplcsy
Flexible Loop (DISEMBL)
MAIAAaaassssslfpkyPCLSRNSPRLPQSLRfsstiravtlqpaksernqtlelegdlFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKcdktysskdnyldLTVISGLKDYTevkpastelfrsPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVfvgttflrytsstsltgrvLREVMLIRIkshllskctlylplcsy
Low Complexity Region (SEG)
MAIaaaaasssssLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIRIKSHLLSKCTLYLPLCSY
Disordered region (IsUnstruct)
*****************************************************LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGF******FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIRIKSHLLSKCTLYLPLC**
Disordered Region (DISOPRED)
**********************************************************DLFSCPICYEPLI******************CRKCDKTYSSKDNYLDLTVI***********ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIRIKSHLLSKCTLYLPLCSY
Disordered Region (DISEMBL)
*************LFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIRIKSHLLSKCTLYLPLCSY
Disordered Region (DISPRO)
***************PKY**LSRNSPRLPQSLRFSSTIRAVTL**********L*LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIRIKSHLLSKCTLYLPLCSY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIAAAAASSSSSLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIRIKSHLLSKCTLYLPLCSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q0WPT7	352	Uncharacterized methyltra	yes	no	0.834	0.744	0.691	1e-106
Q8LBV4	355	Uncharacterized methyltra	no	no	0.722	0.639	0.573	7e-72
O66128	246	Demethylmenaquinone methy	yes	no	0.394	0.504	0.282	3e-09
B9DNV5	241	Demethylmenaquinone methy	yes	no	0.385	0.502	0.302	4e-09
Q24W96	253	Demethylmenaquinone methy	yes	no	0.398	0.494	0.279	8e-09
Q4L6H3	239	Demethylmenaquinone methy	yes	no	0.318	0.418	0.339	1e-08
Q6GGU0	241	Demethylmenaquinone methy	yes	no	0.321	0.419	0.336	2e-08
Q2YY85	241	Demethylmenaquinone methy	yes	no	0.321	0.419	0.336	3e-08
P67063	241	Demethylmenaquinone methy	yes	no	0.321	0.419	0.336	3e-08
A8Z450	241	Demethylmenaquinone methy	yes	no	0.321	0.419	0.336	3e-08

>sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/266 (69%), Positives = 216/266 (81%), Gaps = 4/266 (1%)

Query: 33  RFSSTIRAVTLQPAKSERNQTLELEGD---LFSCPICYEPLIRKGPTGLTLGAIYRSGFK 89
           RF S   +     +   +N+T ++E +   +F+CP+CYEPL+RKGP+G+ L AIYRSGFK
Sbjct: 48  RFPSAAISAVAPKSDINKNETPKIEIEETQVFACPVCYEPLMRKGPSGINLQAIYRSGFK 107

Query: 90  CRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFP 149
           C +C+KTYSSKD YLDLTV + L DY EVKP +TELFRSP VSFLYERGWRQ F RSGFP
Sbjct: 108 CGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFP 167

Query: 150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
           GPDEEF+MA+EYFK A+GGLLVDVSCGSGLFSRKFA+SG YSGV+ALD+SENMLRQC +F
Sbjct: 168 GPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEF 227

Query: 210 IKQDNTILTS-NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
           IK DNT   S N+A+VRADV RLPF SG VDAVHAGAALHCWPSP+NA+AEI R+LRSGG
Sbjct: 228 IKNDNTFDNSTNIAVVRADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGG 287

Query: 269 VFVGTTFLRYTSSTSLTGRVLREVML 294
           VFVGTTFLRY+ ST    R  +  +L
Sbjct: 288 VFVGTTFLRYSPSTPWIIRPFQSRIL 313

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1

 Score =  270 bits (691), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 133/232 (57%), Positives = 164/232 (70%), Gaps = 5/232 (2%)

Query: 47  KSERNQTLELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLD 105
           K ++N+    E  + +CPICY  L     P GL   A      +C  C ++YS  + +LD
Sbjct: 65  KKDKNRG---EKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLD 121

Query: 106 LTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA 165
           L V SG K Y+E  P STELFR+P VSFLYERGWRQNF   GFPGP++EF+MA+ Y K  
Sbjct: 122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-KQDNTILTSNLALV 224
            GG ++D SCGSG+FSR F +S  +S V+ALD+SENMLRQCY+ + K++N      L LV
Sbjct: 182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276
           RAD+ RLPF SG VDAVHAGAALHCWPSPS+AVAEISR+LR GGVFV TTF+
Sbjct: 242 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI 293

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O66128|UBIE_MICLU Demethylmenaquinone methyltransferase OS=Micrococcus luteus GN=ubiE PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 21/145 (14%)

Query: 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS 187
           +  +SF   + WR+             + M Q   K  +G   +DV CG+G ++ + A++
Sbjct: 35  NDIISFNQHKSWRK-------------YTMKQMNVK--KGSKALDVCCGTGDWTIQMAQA 79

Query: 188 -GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246
            G    V+ LDFSENML      + Q  T    N+ L+  +   LPF     D    G  
Sbjct: 80  VGKNGHVIGLDFSENMLS-----VAQGKTNHIQNIELIHGNAMELPFEDNIFDYTTIGFG 134

Query: 247 LHCWPSPSNAVAEISRILRSGGVFV 271
           L   P     + E+ R+L+ GG+ V
Sbjct: 135 LRNLPDYKKGLEEMYRVLKPGGMIV 159

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Micrococcus luteus (taxid: 1270)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|B9DNV5|UBIE_STACT Demethylmenaquinone methyltransferase OS=Staphylococcus carnosus (strain TM300) GN=ubiE PE=3 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 21/142 (14%)

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           +SF   + WR+   +S                +  +G   +DV CG+  ++   +K+   
Sbjct: 29  ISFEQHKVWRKRVMKS---------------MQVKKGSKALDVCCGTADWTIALSKAVGP 73

Query: 191 SG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 249
           SG V+ LDFSENML+     + ++ T   SN+ LV+ D   LPF     D V  G  L  
Sbjct: 74  SGEVIGLDFSENMLK-----VGEEKTKNMSNIQLVQGDAMDLPFDDNEFDYVTIGFGLRN 128

Query: 250 WPSPSNAVAEISRILRSGGVFV 271
            P    A+ E++R+L+ GG+ V
Sbjct: 129 IPDYVIALKEMNRVLKPGGMAV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus carnosus (strain TM300) (taxid: 396513)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q24W96|UBIE_DESHY Demethylmenaquinone methyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=ubiE PE=3 SV=1

 Score = 61.6 bits (148), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 18/143 (12%)

Query: 130 FVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-G 188
            +SF  ++GWR               K A +  ++  G  +VD+ CG+   S + A + G
Sbjct: 43  LMSFGLDKGWR---------------KKAVQTVEAKPGMTMVDICCGTAQLSLELAMTVG 87

Query: 189 TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248
               +  LDFSENML++  + +    +   S + L + D   LPFA    D    G  L 
Sbjct: 88  EQGQITGLDFSENMLKKAQENLA--GSPYRSIIELRQGDAMNLPFADNSFDGATVGWGLR 145

Query: 249 CWPSPSNAVAEISRILRSGGVFV 271
             P     V E+ R+++ GG+ V
Sbjct: 146 NLPDLEKGVQEMIRVVKPGGMVV 168

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q4L6H3|UBIE_STAHJ Demethylmenaquinone methyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ubiE PE=3 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G   +DV CG+  ++   +K+ G +  V  LDFSENML      + ++ T   +N+ LV 
Sbjct: 50  GSKALDVCCGTADWTIALSKAVGAHGEVTGLDFSENMLE-----VGKEKTKHMNNIHLVH 104

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
            D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 105 GDAMNLPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMIV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q6GGU0|UBIE_STAAR Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=ubiE PE=3 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G+   V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGMKALDVCCGTGDWTIALSKAVGSTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MRSA252) (taxid: 282458)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q2YY85|UBIE_STAAB Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ubiE PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFGDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|P67063|UBIE_STAAW Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MW2) GN=ubiE PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|A8Z450|UBIE_STAAT Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ubiE PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
217072446	342	unknown [Medicago truncatula]	0.882	0.809	0.728	1e-115
363814481	341	uncharacterized protein LOC100798970 [Gl	0.882	0.812	0.725	1e-114
225463049	343	PREDICTED: uncharacterized methyltransfe	0.910	0.833	0.717	1e-114
388516609	342	unknown [Medicago truncatula]	0.882	0.809	0.725	1e-114
224120260	308	predicted protein [Populus trichocarpa]	0.796	0.811	0.781	1e-113
356556565	341	PREDICTED: uncharacterized methyltransfe	0.882	0.812	0.715	1e-113
224142467	332	predicted protein [Populus trichocarpa]	0.891	0.843	0.691	1e-113
255581285	290	phosphatidylethanolamine n-methyltransfe	0.777	0.841	0.786	1e-113
225463051	340	PREDICTED: uncharacterized methyltransfe	0.914	0.844	0.708	1e-113
296084557	338	unnamed protein product [Vitis vinifera]	0.904	0.840	0.712	1e-112

>gi|217072446|gb|ACJ84583.1| unknown [Medicago truncatula]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/284 (72%), Positives = 232/284 (81%), Gaps = 7/284 (2%)

Query: 15  FPKYPCL---SRNSPRL--PQSLRFS--STIRAVTLQPAKSERNQTLELEGDLFSCPICY 67
           FPK P L   S   PRL   Q+ RF+  +T   V   P      +    + DLF+CPICY
Sbjct: 17  FPKCPHLFTKSHFHPRLLRSQTQRFNIRATSAVVVDSPLDLSTKKDQGTQVDLFACPICY 76

Query: 68  EPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFR 127
           EPLIRKGP GL L AIYRSGFKC++C K+Y+SKD YLDLTV SGL+DY EV+P  TELFR
Sbjct: 77  EPLIRKGPIGLNLPAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFR 136

Query: 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS 187
           SP VSFLYERGWRQNF +SGFPGPDEEF+MAQEYF+ A+GG +VDVSCGSGLFSRKFAKS
Sbjct: 137 SPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGRIVDVSCGSGLFSRKFAKS 196

Query: 188 GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247
           GTYSGV+ALDFSENMLRQCYDFIK+D+T+ T+NLALVRADV RLPF SG VDAVHAGAAL
Sbjct: 197 GTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAAL 256

Query: 248 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 291
           HCWPSPSNAVAEI+R+LRSGGVFVGTTFLRYTSSTS   R+ RE
Sbjct: 257 HCWPSPSNAVAEITRVLRSGGVFVGTTFLRYTSSTSWVARLFRE 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814481|ref|NP_001242875.1| uncharacterized protein LOC100798970 [Glycine max] gi|255636913|gb|ACU18789.1| unknown [Glycine max]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/281 (72%), Positives = 236/281 (83%), Gaps = 4/281 (1%)

Query: 15  FPKYPCLSRNSPRLPQSLRFSS--TIRAVTLQPAKSE--RNQTLELEGDLFSCPICYEPL 70
           F K P LS  S   P+ LR  S  TIRA++   A+SE    Q   +E D+F+CP+CYEPL
Sbjct: 19  FSKCPRLSSKSHFRPRLLRSISQRTIRAISAVAAESELGTQQDHAIEADIFACPVCYEPL 78

Query: 71  IRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPF 130
           IRKGP+GL L AIYRSGF C++C KTYSSKD YLDLTV +GL+DYTE++PA TELFRSP 
Sbjct: 79  IRKGPSGLNLPAIYRSGFMCKRCKKTYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPL 138

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           VSFL+ERGWRQNF +SGFPGPDEEFKMAQEYF+SA+GGLLVDVSCGSGLFSRKFAKSGTY
Sbjct: 139 VSFLHERGWRQNFRQSGFPGPDEEFKMAQEYFESAEGGLLVDVSCGSGLFSRKFAKSGTY 198

Query: 191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250
           SGV+ALDFSENMLRQCYDFI++D+ + T+N+ALVRADV RLPF+SG VDAVHAGAALHCW
Sbjct: 199 SGVIALDFSENMLRQCYDFIEKDDALSTNNIALVRADVSRLPFSSGSVDAVHAGAALHCW 258

Query: 251 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 291
           PSPSNAVAEI+R L++GGVFVG+TFLRY+S T    R  RE
Sbjct: 259 PSPSNAVAEITRTLKNGGVFVGSTFLRYSSKTPWFLRPFRE 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463049|ref|XP_002268107.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic [Vitis vinifera] gi|296084558|emb|CBI25579.3| unnamed protein product [Vitis vinifera]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/297 (71%), Positives = 240/297 (80%), Gaps = 11/297 (3%)

Query: 3   IAAAAASSSSSLFPKYPCLSRNSPRLP----QSLRFSSTIRA---VTLQPAKSER-NQTL 54
           +A A++S    +FP+YP LSR+S   P     SLRF S IRA   V L+P  S + N  L
Sbjct: 1   MATASSSLHQPIFPQYPSLSRSSRFHPPLRLSSLRFPSRIRASSAVALEPESSTQLNNGL 60

Query: 55  ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKD 114
           E   DLFSCP+CYEPLIRKGP GL L AIYRSGFKCR C+K+YSSKD YLDLT+ +G KD
Sbjct: 61  EF--DLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCRSCNKSYSSKDMYLDLTITAGSKD 118

Query: 115 YTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVS 174
           Y E++P  TELFRSP VSFLYERGWRQNFN+SGFPG DEEFKMAQEYF+   GGLLVDVS
Sbjct: 119 YNELQPNRTELFRSPLVSFLYERGWRQNFNQSGFPGRDEEFKMAQEYFEPVIGGLLVDVS 178

Query: 175 CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRLPF 233
           CGSGLFSRKFA+SGTYSGVVALDFSENMLRQCYDFIK++N  L T+NLALVRADV RLPF
Sbjct: 179 CGSGLFSRKFAESGTYSGVVALDFSENMLRQCYDFIKKENPALATTNLALVRADVSRLPF 238

Query: 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           ++G VDAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR +   S    +LR
Sbjct: 239 STGSVDAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPSFGNSSITSILR 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516609|gb|AFK46366.1| unknown [Medicago truncatula]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/284 (72%), Positives = 231/284 (81%), Gaps = 7/284 (2%)

Query: 15  FPKYPCL---SRNSPRL--PQSLRFS--STIRAVTLQPAKSERNQTLELEGDLFSCPICY 67
           FPK P L   S   PRL   Q+ RF+  +T   V   P      +    + DLF+CPICY
Sbjct: 17  FPKCPHLFTKSHFHPRLLRSQTQRFNIRATSAVVVDSPLDLSTKKDQGTQVDLFACPICY 76

Query: 68  EPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFR 127
           EPLIRKGP GL L AIYRSGFKC++C K+Y+SKD YLDLTV SGL+DY EV+P  TELFR
Sbjct: 77  EPLIRKGPIGLNLPAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFR 136

Query: 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS 187
           SP VSFLYERGWRQNF +SGFPGPDEEF+MAQEYF+ A+GG +VDVSCGSGLFSRKFAKS
Sbjct: 137 SPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGRIVDVSCGSGLFSRKFAKS 196

Query: 188 GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247
           GTYSGV+ALDFSENMLRQCYDFIK+D+T+ T+NLALVRADV RLPF SG VDAVHAGAAL
Sbjct: 197 GTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAAL 256

Query: 248 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 291
           HCWPSPSNAVAEI+R+LRSGGVFVGTTF RYTSSTS   R+ RE
Sbjct: 257 HCWPSPSNAVAEITRVLRSGGVFVGTTFFRYTSSTSWVARLFRE 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120260|ref|XP_002331004.1| predicted protein [Populus trichocarpa] gi|222872934|gb|EEF10065.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/252 (78%), Positives = 220/252 (87%), Gaps = 2/252 (0%)

Query: 43  LQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102
            Q   ++++QTLE+  D F+CPICY+PLIRKGP G  L AIYRSGFKC +C+KTYSSK+N
Sbjct: 20  FQELSTQQSQTLEV--DPFACPICYQPLIRKGPKGFNLPAIYRSGFKCNRCNKTYSSKEN 77

Query: 103 YLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYF 162
           YLDLT+ +G+KDYTEVKP  TELFRSP VSFLYERGWRQNFN+SGFPGPDEEFKMAQEYF
Sbjct: 78  YLDLTITAGMKDYTEVKPVRTELFRSPLVSFLYERGWRQNFNQSGFPGPDEEFKMAQEYF 137

Query: 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 222
           K  +GGLLVDVSCGSGLFSRKFAKSGTYS V+ALDFSENMLRQCYDFIKQD+TI T NLA
Sbjct: 138 KPTEGGLLVDVSCGSGLFSRKFAKSGTYSKVIALDFSENMLRQCYDFIKQDDTISTRNLA 197

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST 282
           LVRADV RLPFASG VDA+HAGAALHCWPS SNAVAEI R LRSGGVFVGTTFL+Y+S+T
Sbjct: 198 LVRADVSRLPFASGSVDAIHAGAALHCWPSASNAVAEICRALRSGGVFVGTTFLQYSSTT 257

Query: 283 SLTGRVLREVML 294
           S   R  RE ++
Sbjct: 258 SWIERPFRERIM 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556565|ref|XP_003546595.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic-like [Glycine max]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/281 (71%), Positives = 234/281 (83%), Gaps = 4/281 (1%)

Query: 15  FPKYPCLSRNSPRLPQSLR--FSSTIRAVTLQPAKSE--RNQTLELEGDLFSCPICYEPL 70
           F + P LS  S   P+  R    S IRA++   A+SE    Q   +E D+F+CP+CYEPL
Sbjct: 19  FLRCPRLSSKSQFHPRRFRSQTQSIIRAISAVAAESELGTQQDQAIEADIFACPVCYEPL 78

Query: 71  IRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPF 130
           IRKGP+GL L AIYRSGF C++C K+YSSKD YLDLTV +GL+DYTE++PA TELFRSP 
Sbjct: 79  IRKGPSGLNLPAIYRSGFMCKRCKKSYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPL 138

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           VSFLYERGWRQNF +SGFPGPDEEFKMAQEYF+SA+GGL+VDVSCGSGLFSRKFAKSG Y
Sbjct: 139 VSFLYERGWRQNFRQSGFPGPDEEFKMAQEYFESAKGGLIVDVSCGSGLFSRKFAKSGAY 198

Query: 191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250
           SGV+ALDFSENMLRQCY+FIK+D+T+ T+N+ALVRADV RLPF SG VDAVHAGAALHCW
Sbjct: 199 SGVIALDFSENMLRQCYEFIKKDDTLSTTNIALVRADVSRLPFPSGSVDAVHAGAALHCW 258

Query: 251 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 291
           PSPSNAVAEI+R+L+SGGVFVG+TFLRY+S T    R  RE
Sbjct: 259 PSPSNAVAEITRVLKSGGVFVGSTFLRYSSLTPWFLRPFRE 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142467|ref|XP_002324579.1| predicted protein [Populus trichocarpa] gi|222866013|gb|EEF03144.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/301 (69%), Positives = 237/301 (78%), Gaps = 21/301 (6%)

Query: 1   MAIAAAAASS--SSSLFPKYPCLSRNSPRLPQ-----SLRFSSTIRA---VTLQPAKSER 50
           MA+A+ A       S+  KYP LS  S   P      SLRF STIRA   V L+P ++  
Sbjct: 1   MAMASNALHHPLHQSISLKYPHLSHISRFSPSCLRFTSLRFPSTIRATSAVALEPNQA-- 58

Query: 51  NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110
                    +F+CP+CYEPLIRKGP G  L AIYRS FKC+KC KTYSSKDNYLDLT+ +
Sbjct: 59  ---------IFACPVCYEPLIRKGPPGFNLPAIYRSSFKCKKCTKTYSSKDNYLDLTITA 109

Query: 111 GLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL 170
           G+KDYTE+ P  TELFRSP VSFLYERGWRQ+FN+SGFPGPDEEF+MAQEYFK A+GGLL
Sbjct: 110 GMKDYTEINPVRTELFRSPLVSFLYERGWRQSFNQSGFPGPDEEFEMAQEYFKPARGGLL 169

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           VDVSCGSGLFSRKFAKSG YS V+ALDFSENMLRQCYD+IKQD+TI T+NL L+RADV R
Sbjct: 170 VDVSCGSGLFSRKFAKSGAYSKVIALDFSENMLRQCYDYIKQDDTISTTNLGLIRADVSR 229

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           LPFASG VDAVHAGAA+HCWPSPSNAV+EI R+LRSGGVFVGTTFLRY+S+T    +  R
Sbjct: 230 LPFASGSVDAVHAGAAMHCWPSPSNAVSEICRVLRSGGVFVGTTFLRYSSTTPRIEQPFR 289

Query: 291 E 291
           E
Sbjct: 290 E 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581285|ref|XP_002531454.1| phosphatidylethanolamine n-methyltransferase, putative [Ricinus communis] gi|223528947|gb|EEF30941.1| phosphatidylethanolamine n-methyltransferase, putative [Ricinus communis]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/244 (78%), Positives = 213/244 (87%)

Query: 51  NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110
            QT   E D+F+CP+CYEPLIRKGP G  L AIYRSGFKC+KC+KTYSSKDNYLDLT+ +
Sbjct: 6   QQTQTFEDDVFACPVCYEPLIRKGPPGFNLSAIYRSGFKCKKCNKTYSSKDNYLDLTITA 65

Query: 111 GLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL 170
            +K+YTEVKPA TELFRSP VSFLYERGWRQNFN+SGFPGPDEEFKMAQEYFK A+GG+L
Sbjct: 66  SMKEYTEVKPARTELFRSPLVSFLYERGWRQNFNQSGFPGPDEEFKMAQEYFKPAEGGIL 125

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           VDVSCGSGLFSRKFA SGTYS VVALDFSENMLRQCYDFIKQD+ I   +LALVRADV R
Sbjct: 126 VDVSCGSGLFSRKFATSGTYSKVVALDFSENMLRQCYDFIKQDDNISEKDLALVRADVSR 185

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           LPF+SG VDAVHAGAALHCWPSPSNA+AEI R LRSGGVFVGTTFLRY +++S   R  R
Sbjct: 186 LPFSSGSVDAVHAGAALHCWPSPSNAIAEICRTLRSGGVFVGTTFLRYNATSSWIERSFR 245

Query: 291 EVML 294
           E ++
Sbjct: 246 ERIM 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463051|ref|XP_002268200.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic-like [Vitis vinifera]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/295 (70%), Positives = 233/295 (78%), Gaps = 8/295 (2%)

Query: 3   IAAAAASSSSSLFPKYPCLSRNSPRL--PQ--SLRFSSTIRA---VTLQPAKSERNQTLE 55
           +A AA+     LFPKYP L   S  +  PQ  SL F S  RA   V L+P  S +    +
Sbjct: 1   MAMAASFLHQPLFPKYPFLLHKSQFISRPQISSLPFPSRFRASSAVALEPESSPQLNN-D 59

Query: 56  LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDY 115
           ++ DLFSCP+CYEPLIRKGP GL L AIYRSGFKC+ C+K+YSSKD YLDLT+ +G K Y
Sbjct: 60  MDFDLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCKTCNKSYSSKDMYLDLTITAGSKAY 119

Query: 116 TEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSC 175
            E +P  TELFRSP VSFLYERGWRQNFN  GFPGPDEEFKMAQEYFK A GGLLVDVSC
Sbjct: 120 NEAQPVRTELFRSPLVSFLYERGWRQNFNLRGFPGPDEEFKMAQEYFKPAAGGLLVDVSC 179

Query: 176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235
           GSGLFSRKFA+SGTYSGVVALDFSENML QCYDFIK+DN  LT+NLALVRAD+ RLPF+S
Sbjct: 180 GSGLFSRKFAESGTYSGVVALDFSENMLHQCYDFIKKDNPSLTTNLALVRADISRLPFSS 239

Query: 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           G VDAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR   + S    +LR
Sbjct: 240 GSVDAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPIYTNSSIPAILR 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084557|emb|CBI25578.3| unnamed protein product [Vitis vinifera]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/292 (71%), Positives = 231/292 (79%), Gaps = 8/292 (2%)

Query: 6   AAASSSSSLFPKYPCLSRNSPRL--PQ--SLRFSSTIRA---VTLQPAKSERNQTLELEG 58
           AA+     LFPKYP L   S  +  PQ  SL F S  RA   V L+P  S +    +++ 
Sbjct: 2   AASFLHQPLFPKYPFLLHKSQFISRPQISSLPFPSRFRASSAVALEPESSPQLNN-DMDF 60

Query: 59  DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEV 118
           DLFSCP+CYEPLIRKGP GL L AIYRSGFKC+ C+K+YSSKD YLDLT+ +G K Y E 
Sbjct: 61  DLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCKTCNKSYSSKDMYLDLTITAGSKAYNEA 120

Query: 119 KPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSG 178
           +P  TELFRSP VSFLYERGWRQNFN  GFPGPDEEFKMAQEYFK A GGLLVDVSCGSG
Sbjct: 121 QPVRTELFRSPLVSFLYERGWRQNFNLRGFPGPDEEFKMAQEYFKPAAGGLLVDVSCGSG 180

Query: 179 LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238
           LFSRKFA+SGTYSGVVALDFSENML QCYDFIK+DN  LT+NLALVRAD+ RLPF+SG V
Sbjct: 181 LFSRKFAESGTYSGVVALDFSENMLHQCYDFIKKDNPSLTTNLALVRADISRLPFSSGSV 240

Query: 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           DAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR   + S    +LR
Sbjct: 241 DAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPIYTNSSIPAILR 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2063218	352	AT2G41040 [Arabidopsis thalian	0.796	0.710	0.720	2.5e-97
TAIR|locus:2194759	355	AT1G78140 [Arabidopsis thalian	0.722	0.639	0.573	5.1e-67
UNIPROTKB|G5EGY9	380	MGCH7_ch7g116 "Sterol 24-C-met	0.420	0.347	0.321	1.1e-07
UNIPROTKB|Q5LVS6	208	SPO0620 "Uncharacterized prote	0.347	0.524	0.316	5.9e-07
TIGR_CMR|SPO_0620	208	SPO_0620 "conserved hypothetic	0.347	0.524	0.316	5.9e-07
POMBASE|SPBC16E9.05	378	erg6 "sterol 24-C-methyltransf	0.420	0.349	0.301	1.2e-06
UNIPROTKB|Q3AB55	244	menG "Demethylmenaquinone meth	0.318	0.409	0.330	1.4e-06
TIGR_CMR|CHY_1809	244	CHY_1809 "2-heptaprenyl-1,4-na	0.318	0.409	0.330	1.4e-06
SGD|S000004467	383	ERG6 "Delta(24)-sterol C-methy	0.477	0.391	0.281	4.4e-06
TIGR_CMR|BA_2890	258	BA_2890 "methyltransferase, Ub	0.366	0.445	0.278	5.1e-06

TAIR|locus:2063218 AT2G41040 [Arabidopsis thaliana (taxid:3702)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 183/254 (72%), Positives = 212/254 (83%)

Query:    33 RFSSTIRAVTLQPAKSERNQT--LELEG-DLFSCPICYEPLIRKGPTGLTLGAIYRSGFK 89
             RF S   +     +   +N+T  +E+E   +F+CP+CYEPL+RKGP+G+ L AIYRSGFK
Sbjct:    48 RFPSAAISAVAPKSDINKNETPKIEIEETQVFACPVCYEPLMRKGPSGINLQAIYRSGFK 107

Query:    90 CRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFP 149
             C +C+KTYSSKD YLDLTV + L DY EVKP +TELFRSP VSFLYERGWRQ F RSGFP
Sbjct:   108 CGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFP 167

Query:   150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             GPDEEF+MA+EYFK A+GGLLVDVSCGSGLFSRKFA+SG YSGV+ALD+SENMLRQC +F
Sbjct:   168 GPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEF 227

Query:   210 IKQDNTILTS-NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
             IK DNT   S N+A+VRADV RLPF SG VDAVHAGAALHCWPSP+NA+AEI R+LRSGG
Sbjct:   228 IKNDNTFDNSTNIAVVRADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGG 287

Query:   269 VFVGTTFLRYTSST 282
             VFVGTTFLRY+ ST
Sbjct:   288 VFVGTTFLRYSPST 301

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2194759 AT1G78140 [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 133/232 (57%), Positives = 164/232 (70%)

Query:    47 KSERNQTLELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLD 105
             K ++N+    E  + +CPICY  L     P GL   A      +C  C ++YS  + +LD
Sbjct:    65 KKDKNRG---EKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLD 121

Query:   106 LTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA 165
             L V SG K Y+E  P STELFR+P VSFLYERGWRQNF   GFPGP++EF+MA+ Y K  
Sbjct:   122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181

Query:   166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-KQDNTILTSNLALV 224
              GG ++D SCGSG+FSR F +S  +S V+ALD+SENMLRQCY+ + K++N      L LV
Sbjct:   182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241

Query:   225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276
             RAD+ RLPF SG VDAVHAGAALHCWPSPS+AVAEISR+LR GGVFV TTF+
Sbjct:   242 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI 293

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 47/146 (32%), Positives = 74/146 (50%)

Query:   134 LYERGWRQNFNRSGFPGPDEEFKMA---QEYFKSAQGGL-----LVDVSCGSGLFSRKFA 185
             +YE GW Q+F+   F   +E F  A    E++ + Q G+     ++DV CG G  +R+ A
Sbjct:    90 IYEYGWGQSFHFCRF-SHNESFYQAIARHEHYLAHQIGIKEGMTVLDVGCGVGGPAREIA 148

Query:   186 KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-G 244
             K  T   VV L+ ++  + +   + KQ+   L S L  V+ D  ++ F     DAV+A  
Sbjct:   149 KF-TGCNVVGLNNNDYQIDRATHYAKQEK--LDSQLQFVKGDFMQMSFPDESFDAVYAIE 205

Query:   245 AALHCWPSPSNAVAEISRILRSGGVF 270
             A +H  P      +EI R+L+ GG F
Sbjct:   206 ATVHA-PKLEGVYSEIFRVLKPGGTF 230

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5LVS6 SPO0620 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 133 (51.9 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 37/117 (31%), Positives = 58/117 (49%)

Query:   158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL 217
             A  +   A G  L+D+ CG G    +  +    SG V +DFSE ML++     +  + + 
Sbjct:    37 ALSFLDLADGDSLIDIGCGHGETLFQADRIVRLSGSVGVDFSEVMLKRAR--ARNRDAVW 94

Query:   218 TSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
              + +A   AD   LPF     G   +VH    ++ WP+P+  +AE  R+LR GG F+
Sbjct:    95 DTRMAFHCADTAALPFPDKRFGKALSVHT---IYFWPNPAAHLAEAFRVLRRGGRFL 148

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0620 SPO_0620 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 133 (51.9 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 37/117 (31%), Positives = 58/117 (49%)

Query:   158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL 217
             A  +   A G  L+D+ CG G    +  +    SG V +DFSE ML++     +  + + 
Sbjct:    37 ALSFLDLADGDSLIDIGCGHGETLFQADRIVRLSGSVGVDFSEVMLKRAR--ARNRDAVW 94

Query:   218 TSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
              + +A   AD   LPF     G   +VH    ++ WP+P+  +AE  R+LR GG F+
Sbjct:    95 DTRMAFHCADTAALPFPDKRFGKALSVHT---IYFWPNPAAHLAEAFRVLRRGGRFL 148

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBC16E9.05 erg6 "sterol 24-C-methyltransferase Erg6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 44/146 (30%), Positives = 72/146 (49%)

Query:   134 LYERGWRQNFNRSGFPGPDEEFKMA---QEYFKSAQGGL-----LVDVSCGSGLFSRKFA 185
             LYE GW Q+F+ S F    E F  +    E++ + + G+     ++DV CG G  +R+  
Sbjct:    85 LYEYGWSQSFHFSRFY-KGEAFAQSIARHEHYLAYRMGIKPGSRVLDVGCGVGGPAREIT 143

Query:   186 KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-G 244
             +  T   +V L+ ++  + +C ++  + N  L      V+ D   +PF     D V+A  
Sbjct:   144 EF-TGCNLVGLNNNDYQISRCNNYAVKRN--LDKKQVFVKGDFMHMPFEDNTFDYVYAIE 200

Query:   245 AALHCWPSPSNAVAEISRILRSGGVF 270
             A +H  PS      EI R+L+ GGVF
Sbjct:   201 ATVHA-PSLEGVYGEIFRVLKPGGVF 225

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006696 "ergosterol biosynthetic process" evidence=ISO;IMP

GO:0071210 "protein insertion into membrane raft" evidence=IMP

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

UNIPROTKB|Q3AB55 menG "Demethylmenaquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 133 (51.9 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 34/103 (33%), Positives = 52/103 (50%)

Query:   167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
             GG  +DV+CG+G+F+ + A+  G    VV LDF+ENML      I + +  +   + LV 
Sbjct:    52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNIARYS--MEKIIKLVH 109

Query:   226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
              +   LPF     D    G AL   P     + E+ R+++ GG
Sbjct:   110 GNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGG 152

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1809 CHY_1809 "2-heptaprenyl-1,4-naphthoquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 133 (51.9 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 34/103 (33%), Positives = 52/103 (50%)

Query:   167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
             GG  +DV+CG+G+F+ + A+  G    VV LDF+ENML      I + +  +   + LV 
Sbjct:    52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNIARYS--MEKIIKLVH 109

Query:   226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
              +   LPF     D    G AL   P     + E+ R+++ GG
Sbjct:   110 GNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGG 152

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

SGD|S000004467 ERG6 "Delta(24)-sterol C-methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 133 (51.9 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 47/167 (28%), Positives = 81/167 (48%)

Query:   112 LKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGF-PGPDEEFKMA--QEY--FKSA- 165
             L+DY E    +T  + +    F YE GW  +F+ S F  G      +A  + Y  +K+  
Sbjct:    63 LEDYNE----ATHSYYNVVTDF-YEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGI 117

Query:   166 -QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
              +G L++DV CG G  +R+ A+  T   V+ L+ ++  + +   + K+ N  L+  +  V
Sbjct:   118 QRGDLVLDVGCGVGGPAREIARF-TGCNVIGLNNNDYQIAKAKYYAKKYN--LSDQMDFV 174

Query:   225 RADVCRLPFASGFVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVF 270
             + D  ++ F     D V+A  A  H  P      +EI ++L+ GG F
Sbjct:   175 KGDFMKMDFEENTFDKVYAIEATCHA-PKLEGVYSEIYKVLKPGGTF 220

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IEA;IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006696 "ergosterol biosynthetic process" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

TIGR_CMR|BA_2890 BA_2890 "methyltransferase, UbiE/COQ5 family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 129 (50.5 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 34/122 (27%), Positives = 58/122 (47%)

Query:   150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             GPD ++ + Q   +S     L+D++ G G  +   A    +  VVALD +E ML     F
Sbjct:    27 GPDLQYVVQQ--VESRHNNRLLDIATGGGHVANVLAP--LFKEVVALDLTEKMLENAKKF 82

Query:   210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGV 269
             I  +      N++ V  +   LPF+    D +    A H + +P+  + E++R L   G+
Sbjct:    83 IISNGH---ENVSFVAGNAESLPFSDSSFDTITCRIAAHHFTNPAQFIYEVNRTLEDNGL 139

Query:   270 FV 271
             F+
Sbjct:   140 FI 141

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009108 "coenzyme biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WPT7	Y2104_ARATH	2, ., 1, ., 1, ., -	0.6917	0.8343	0.7443	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	9e-22
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	4e-15
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-14
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	5e-14
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	7e-13
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	6e-12
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	8e-12
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	6e-11
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	6e-09
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	2e-08
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	7e-08
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-07
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	2e-07
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	8e-07
PRK05785	226	PRK05785, PRK05785, hypothetical protein; Provisio	2e-06
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	2e-06
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	2e-06
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	9e-06
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	4e-04

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 87.3 bits (217), Expect = 9e-22
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 10/101 (9%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +DV CG+GL +   A+ G    V  +D S  ML               +    V  D   
Sbjct: 1   LDVGCGTGLLAEALARRGGAR-VTGVDLSPEMLALARKR---------APRKFVVGDAED 50

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           LPF     D V +   LH  P P  A+ EI+R+L+ GG  V
Sbjct: 51  LPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           D+ CG+G  +R   K    +  +A D S  ML Q         T L+ N+  +  D  +L
Sbjct: 40  DIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQA-------KTKLSENVQFICGDAEKL 92

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
           P      D + +  AL      S A++E++R+L+ GG+   +TF
Sbjct: 93  PLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  ++DV CG G  +R+ A+     G VV +D SE ML       K+    L  N+  VR
Sbjct: 20  GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML----ALAKERAAGLGPNVEFVR 75

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
            D   LPF  G  DAV +   L     P+ A+AEI+R+LR GG
Sbjct: 76  GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118

Length = 241

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 69.8 bits (172), Expect = 5e-14
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 9/120 (7%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENML---RQCYDFIK 211
           +   ++     G  ++D++CG+G  +   AK+   +G VV LDFSE ML   R+     K
Sbjct: 41  RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGRE-----K 95

Query: 212 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             +  L+ N+  V+ D   LPF     DAV     L   P    A+ E+ R+L+ GG  V
Sbjct: 96  LRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLV 155

Length = 239

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 66.5 bits (163), Expect = 7e-13
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++DV+CG+G  +   AKS     VV LD SE+ML       ++       N+  V  
Sbjct: 52  GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA---REKLKKKGVQNVEFVVG 108

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277
           D   LPF     DAV     L        A+ E+ R+L+ GG  +   F +
Sbjct: 109 DAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159

Length = 238

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 60.9 bits (148), Expect = 6e-12
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +D+ CG+G   R   ++        +D S   L    + +     +    + L   D   
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVF 270
           L   S   D V A   LH    P   +  + R+L+ GGV 
Sbjct: 61  LDPGS--FDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 63.4 bits (155), Expect = 8e-12
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 21/143 (14%)

Query: 130 FVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT 189
            +SF   R WR+   +       ++               ++DV+CG+G  + + AKS  
Sbjct: 18  LLSFGLHRLWRRRAVKLIGVFKGQK---------------VLDVACGTGDLAIELAKSAP 62

Query: 190 YSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248
             G V  +DFS  ML      + +  + L  N+  ++AD   LPF     DAV     L 
Sbjct: 63  DRGKVTGVDFSSEMLE-----VAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117

Query: 249 CWPSPSNAVAEISRILRSGGVFV 271
                  A+ E+ R+L+ GG  V
Sbjct: 118 NVTDIQKALREMYRVLKPGGRLV 140

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENML---RQCYDFIKQDNTILTSNLA 222
            G  ++D+ CG+G  + + A+    + V  +D S  ML   R+               + 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGP------RIT 54

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
            V+ D           DAV  G            +  ++ +L+ GG  V
Sbjct: 55  FVQGDAPDALDLLEGFDAVFIGGGGGDLL---ELLDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+ CG+G  +   A       V  +D S   L       K    +L  N+ +++ D  
Sbjct: 2   VLDLGCGTGALALALASGPGAR-VTGVDISPVALELAR---KAAAALLADNVEVLKGDAE 57

Query: 230 RLPF-ASGFVDAVHAGAALHCWP-SPSNAVAEISRILRSGGVFVGTTFL 276
            LP  A    D + +   LH      +  + E  R+L+ GGV V T  L
Sbjct: 58  ELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLVL 106

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+ CG+G   R  A++G  S V  +D S+  L    + ++     +      V AD  
Sbjct: 1   ILDLGCGTGRVLRALARAG-PSSVTGVDISKEALELAKERLRDKGPKVR----FVVADAR 55

Query: 230 RLPFASGFVDAVH-AGAALHCWPSPS--NAVAEISRILRSGG 268
            LPF  G  D V  AG +L           + E +R+LR GG
Sbjct: 56  DLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 52.6 bits (123), Expect = 7e-08
 Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 6/158 (3%)

Query: 123 TELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSR 182
            EL       +         F        D    +          G+L D+ CG+G  + 
Sbjct: 6   AELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVL-DIGCGTGRLAL 64

Query: 183 KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFASGFVDA 240
                G  + VV +D S  ML       +         +  V AD     LPF       
Sbjct: 65  LARLGGRGAYVVGVDLSPEMLALARARAEGAGL---GLVDFVVADALGGVLPFEDSASFD 121

Query: 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278
           +     +     P+ A+ E+ R+L+ GG  V +  LR 
Sbjct: 122 LVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159

Length = 257

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 170 LVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228
           ++D+ CG+G  +   A K G  + VV +D SE  + +      +       N+  ++ D+
Sbjct: 7   VLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAI-EKAKENAKKLGY--ENVEFIQGDI 63

Query: 229 CRLP---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             LP         D V +   L+  P P   + EI R+L+ GGV +
Sbjct: 64  EELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLI 109

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G   +DV+ G+G ++   + S   SG VV LD +ENML++     K++      N+  ++
Sbjct: 48  GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKY---NIEFLQ 104

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
            +   LPF     D V     L  +P     + E  R+L+ GG  V
Sbjct: 105 GNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVV 150

Length = 233

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 47.5 bits (113), Expect = 8e-07
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 19/115 (16%)

Query: 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 222
           +   GG ++D+ CG+G+  R   + G    V  +D S   +     F   D  +L     
Sbjct: 19  RLKPGGRVLDIGCGTGILLRLLRERGFD--VTGVDPSPAAVLIFSLFDAPDPAVL----- 71

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277
                       +G  D + A   L   P P   + ++  +L+ GGV + +T L 
Sbjct: 72  ------------AGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLA 114

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 22/103 (21%)

Query: 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227
             ++DV+ G G  S  F K   Y  VVALD++ENML+                + LV  D
Sbjct: 53  KKVLDVAAGKGELSYHFKKVFKYY-VVALDYAENMLK----------------MNLVADD 95

Query: 228 --VC---RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILR 265
             V     LPF     D V +  ALH   +    +AE +R+ R
Sbjct: 96  KVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR 138

Length = 226

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           D  CG G  SR + + G  S V ALD S  ML Q       D+ +          D+  L
Sbjct: 48  DAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDAADHYLA--------GDIESL 97

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276
           P A+   D   +  A+    + S A+ E+ R++R GGV   TT +
Sbjct: 98  PLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142

Length = 251

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
            G   +DV CG+  +S   A++    G V+ LDFSENML      +K        N+ LV
Sbjct: 45  AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL---HNVELV 101

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             +   LPF     D V  G  L   P     + E+ R+++ GG  V
Sbjct: 102 HGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 10/143 (6%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSG----LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 211
           +MA  +  +  G  ++D+ CGSG    L S K    G    V+ LDFS   L       +
Sbjct: 63  RMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGK---VMGLDFSSEQLAVAASRQE 119

Query: 212 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                   N+  +  D   LPF   + DA+  G  L        A+ E+ R+L+ G    
Sbjct: 120 LKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGS--- 176

Query: 272 GTTFLRYTSSTSLTGRVLREVML 294
             + L +  ST      ++E M+
Sbjct: 177 RVSILDFNKSTQPFTTSMQEWMI 199

Length = 261

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++D   GSG F    A++G  + VV ++             +     L   + +V  
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALA--RRRLALAGLAPRVRVVVG 58

Query: 227 DVCRLP-FASGFVDAV--------HAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           D   L     G  D V         AG            +A   R+L+ GGV V
Sbjct: 59  DARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112

This family contains methyltransferase domains. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.93
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.92
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.91
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.86
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.86
PLN02244	340	tocopherol O-methyltransferase	99.83
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.83
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.82
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.8
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.79
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.78
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.78
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.77
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.77
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.77
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.75
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.75
PRK05785	226	hypothetical protein; Provisional	99.75
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.74
PRK11207	197	tellurite resistance protein TehB; Provisional	99.74
PLN02336	475	phosphoethanolamine N-methyltransferase	99.73
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.73
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.72
PRK08317	241	hypothetical protein; Provisional	99.72
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.72
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.72
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.71
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.71
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.71
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.71
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.7
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.7
KOG4300	252	consensus Predicted methyltransferase [General fun	99.69
PLN02490	340	MPBQ/MSBQ methyltransferase	99.69
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.69
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.68
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.68
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.68
PRK12335	287	tellurite resistance protein TehB; Provisional	99.66
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.66
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.65
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.65
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.64
PRK06922	677	hypothetical protein; Provisional	99.64
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.64
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.63
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.63
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.62
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.62
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.61
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.61
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.61
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.6
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.59
PRK06202	232	hypothetical protein; Provisional	99.59
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.59
PLN03075	296	nicotianamine synthase; Provisional	99.58
PLN02336	475	phosphoethanolamine N-methyltransferase	99.58
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.58
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.57
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.57
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.57
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.56
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.56
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.56
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.55
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.55
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.55
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.55
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.55
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.51
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.51
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.51
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.5
PRK07402	196	precorrin-6B methylase; Provisional	99.49
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.48
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.48
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.48
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.47
KOG1271	227	consensus Methyltransferases [General function pre	99.47
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.46
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.46
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.46
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.45
PRK14968	188	putative methyltransferase; Provisional	99.45
PRK04266	226	fibrillarin; Provisional	99.45
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.44
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.43
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.43
KOG3010	261	consensus Methyltransferase [General function pred	99.42
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.42
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.42
TIGR03438	301	probable methyltransferase. This model represents	99.42
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.41
PRK14967	223	putative methyltransferase; Provisional	99.41
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.4
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.39
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.38
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.37
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.37
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.37
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.37
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.37
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.35
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.35
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.33
PRK00811	283	spermidine synthase; Provisional	99.33
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.33
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.32
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.32
COG4123	248	Predicted O-methyltransferase [General function pr	99.31
PRK04457	262	spermidine synthase; Provisional	99.31
PTZ00146	293	fibrillarin; Provisional	99.31
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.31
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.31
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.3
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.3
KOG2361	264	consensus Predicted methyltransferase [General fun	99.3
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.3
TIGR00438	188	rrmJ cell division protein FtsJ.	99.29
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.28
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.28
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.27
PHA03411	279	putative methyltransferase; Provisional	99.27
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.26
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.26
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.25
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.24
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.24
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.22
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.22
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.22
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.2
PRK01581	374	speE spermidine synthase; Validated	99.2
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.19
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.18
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.18
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.17
PLN02366	308	spermidine synthase	99.15
COG2890	280	HemK Methylase of polypeptide chain release factor	99.14
COG4122	219	Predicted O-methyltransferase [General function pr	99.13
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.09
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.08
PHA03412	241	putative methyltransferase; Provisional	99.07
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.06
PLN02476	278	O-methyltransferase	99.06
PRK03612	521	spermidine synthase; Provisional	99.05
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.05
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.04
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.04
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.04
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.03
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.02
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	99.01
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.01
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.98
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.97
KOG2904	328	consensus Predicted methyltransferase [General fun	98.95
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.95
KOG2899	288	consensus Predicted methyltransferase [General fun	98.94
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.94
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.93
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.92
KOG2940	325	consensus Predicted methyltransferase [General fun	98.92
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.92
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.91
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.91
PLN02672	1082	methionine S-methyltransferase	98.91
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.9
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.9
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.9
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.89
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.88
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.87
PRK04148	134	hypothetical protein; Provisional	98.87
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.87
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.85
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.85
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.83
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.78
PRK00536	262	speE spermidine synthase; Provisional	98.77
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.77
PLN02823	336	spermine synthase	98.76
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.74
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.72
KOG1331	293	consensus Predicted methyltransferase [General fun	98.71
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.7
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.7
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.67
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.67
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.66
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.66
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.63
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.62
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.61
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.6
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.6
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.59
COG2521	287	Predicted archaeal methyltransferase [General func	98.58
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.57
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.57
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.56
COG2520	341	Predicted methyltransferase [General function pred	98.55
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.54
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.54
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.51
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.51
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.5
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.5
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.49
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.46
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.44
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.44
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.43
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.4
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.38
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.37
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.36
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.35
KOG3115	249	consensus Methyltransferase-like protein [General	98.35
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.33
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.32
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.27
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.26
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.2
PRK11827	60	hypothetical protein; Provisional	98.19
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.17
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.17
COG2835	60	Uncharacterized conserved protein [Function unknow	98.16
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.16
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.14
COG3897	218	Predicted methyltransferase [General function pred	98.14
PF13679	141	Methyltransf_32: Methyltransferase domain	98.13
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.12
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.11
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.1
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.08
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.06
COG4076	252	Predicted RNA methylase [General function predicti	98.05
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.0
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.98
KOG2730	263	consensus Methylase [General function prediction o	97.91
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.89
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.88
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.87
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.81
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.75
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.72
COG4798	238	Predicted methyltransferase [General function pred	97.69
PF03966	68	Trm112p: Trm112p-like protein; InterPro: IPR005651	97.67
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.66
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.64
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.59
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.55
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.54
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.47
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.45
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.45
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.37
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.34
COG0286	489	HsdM Type I restriction-modification system methyl	97.3
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.28
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.24
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.19
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.14
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.13
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.13
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.09
PRK10742	250	putative methyltransferase; Provisional	97.03
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.01
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.99
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.92
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.87
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.73
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.7
PF03269	177	DUF268: Caenorhabditis protein of unknown function	96.66
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.64
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.58
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.54
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.52
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.4
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.32
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.27
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.27
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.24
PRK11524	284	putative methyltransferase; Provisional	96.19
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.18
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.09
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.09
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.0
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.96
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.93
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.93
PRK13699	227	putative methylase; Provisional	95.85
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	95.52
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.49
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	95.4
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.38
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	95.14
COG1568	354	Predicted methyltransferases [General function pre	95.1
PRK00420	112	hypothetical protein; Validated	95.06
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	94.97
PHA01634	156	hypothetical protein	94.92
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.8
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	94.75
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	94.73
COG4301	321	Uncharacterized conserved protein [Function unknow	94.64
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.6
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	94.56
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.53
KOG1088	124	consensus Uncharacterized conserved protein [Funct	94.49
KOG2671	421	consensus Putative RNA methylase [Replication, rec	94.47
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.45
KOG2920	282	consensus Predicted methyltransferase [General fun	94.43
PHA00626	59	hypothetical protein	94.42
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	94.38
PRK09678	72	DNA-binding transcriptional regulator; Provisional	94.34
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.27
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.25
COG3129	292	Predicted SAM-dependent methyltransferase [General	94.22
COG1198	730	PriA Primosomal protein N' (replication factor Y)	94.15
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	93.98
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	93.97
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	93.96
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	93.91
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	93.9
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	93.82
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.81
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	93.71
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	93.65
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.51
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	93.51
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.48
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	93.44
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	93.39
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	93.36
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.35
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	93.34
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	93.33
COG1565	370	Uncharacterized conserved protein [Function unknow	93.23
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	93.19
TIGR00595	505	priA primosomal protein N'. All proteins in this f	93.0
PF11781	36	RRN7: RNA polymerase I-specific transcription init	92.94
PRK14873	665	primosome assembly protein PriA; Provisional	92.82
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	92.75
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	92.75
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	92.65
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	92.57
TIGR00497	501	hsdM type I restriction system adenine methylase (	92.56
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.38
PLN02740	381	Alcohol dehydrogenase-like	92.29
PRK00432	50	30S ribosomal protein S27ae; Validated	92.21
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	92.09
PF08792	33	A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I	92.05
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	92.04
PTZ00357	1072	methyltransferase; Provisional	92.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	91.96
PLN02827	378	Alcohol dehydrogenase-like	91.83
TIGR00686	109	phnA alkylphosphonate utilization operon protein P	91.66
PRK05580	679	primosome assembly protein PriA; Validated	91.63
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	91.61
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	91.6
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	91.48
PRK10220	111	hypothetical protein; Provisional	91.48
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	91.31
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	91.26
KOG1227	351	consensus Putative methyltransferase [General func	91.24
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	91.21
COG3809	88	Uncharacterized protein conserved in bacteria [Fun	91.13
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	91.01
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	90.93
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	90.8
PF13248	26	zf-ribbon_3: zinc-ribbon domain	90.8
COG4306	160	Uncharacterized protein conserved in bacteria [Fun	90.79
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	90.46
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	90.41
smart00661	52	RPOL9 RNA polymerase subunit 9.	90.4
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	90.38
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	90.35
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	90.19
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	89.85
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	89.66
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	89.66
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	89.64
COG2933	358	Predicted SAM-dependent methyltransferase [General	89.44
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	89.39
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	89.28
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	89.23
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	89.17
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	88.87
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	88.78
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	88.73
COG1656	165	Uncharacterized conserved protein [Function unknow	88.71
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	88.69
PF14353	128	CpXC: CpXC protein	88.68
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	88.65
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	88.59
PF14205	55	Cys_rich_KTR: Cysteine-rich KTR	88.58
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	88.49
PF06677	41	Auto_anti-p27: Sjogren's syndrome/scleroderma auto	88.32
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	88.28
COG3315	297	O-Methyltransferase involved in polyketide biosynt	88.26
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	88.22
PLN02586	360	probable cinnamyl alcohol dehydrogenase	88.07
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	88.03
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	87.71
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	87.67
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	87.58
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	87.49
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	87.43
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	87.4
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	87.35
TIGR03655	53	anti_R_Lar restriction alleviation protein, Lar fa	87.32
KOG3924	419	consensus Putative protein methyltransferase invol	87.05
PLN02494	477	adenosylhomocysteinase	87.01
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	86.85
PTZ00255	90	60S ribosomal protein L37a; Provisional	86.77
COG1326	201	Uncharacterized archaeal Zn-finger protein [Genera	86.74
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	86.48
PRK11524	284	putative methyltransferase; Provisional	86.41
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	86.35
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	86.26
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.13
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	86.12
PRK13699	227	putative methylase; Provisional	86.09
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	86.06
PF13453	41	zf-TFIIB: Transcription factor zinc-finger	86.06
COG3677	129	Transposase and inactivated derivatives [DNA repli	86.06
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	85.96
COG1779	201	C4-type Zn-finger protein [General function predic	85.94
PF01927	147	Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T	85.75
PF04606	47	Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: I	85.56
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	85.55
PRK12939	250	short chain dehydrogenase; Provisional	85.46
KOG2906	105	consensus RNA polymerase III subunit C11 [Transcri	85.24
COG3877	122	Uncharacterized protein conserved in bacteria [Fun	85.09
PRK07109	334	short chain dehydrogenase; Provisional	85.02
PRK03976	90	rpl37ae 50S ribosomal protein L37Ae; Reviewed	85.01
KOG3507	62	consensus DNA-directed RNA polymerase, subunit RPB	84.94
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	84.9
PRK07806	248	short chain dehydrogenase; Provisional	84.76
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	84.71
smart00531	147	TFIIE Transcription initiation factor IIE.	84.61
COG1571	421	Predicted DNA-binding protein containing a Zn-ribb	84.6
PHA02998	195	RNA polymerase subunit; Provisional	84.17
PLN02178	375	cinnamyl-alcohol dehydrogenase	84.16
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	84.15
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	83.95
PLN02514	357	cinnamyl-alcohol dehydrogenase	83.74
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	83.68
PRK06701	290	short chain dehydrogenase; Provisional	83.61
PRK05854	313	short chain dehydrogenase; Provisional	83.57
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	83.57
TIGR00244	147	transcriptional regulator NrdR. Members of this al	83.43
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	83.33
PRK08265	261	short chain dehydrogenase; Provisional	83.32
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	83.3
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	83.17
COG1327	156	Predicted transcriptional regulator, consists of a	83.17
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	83.1
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.08
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	82.96
PRK07576	264	short chain dehydrogenase; Provisional	82.88
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	82.85
COG1594	113	RPB9 DNA-directed RNA polymerase, subunit M/Transc	82.83
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	82.78
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	82.74
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	82.69
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	82.64
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	82.48
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	82.17
PRK06181	263	short chain dehydrogenase; Provisional	82.01
PRK06266	178	transcription initiation factor E subunit alpha; V	81.98
PRK08324	681	short chain dehydrogenase; Validated	81.96
KOG2691	113	consensus RNA polymerase II subunit 9 [Transcripti	81.92
COG0863	302	DNA modification methylase [DNA replication, recom	81.73
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	81.72
COG1255	129	Uncharacterized protein conserved in archaea [Func	81.64
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	81.62
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	81.5
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	81.39
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	81.16
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	81.03
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	80.88
TIGR03831	46	YgiT_finger YgiT-type zinc finger domain. This dom	80.71
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	80.68
KOG2906	105	consensus RNA polymerase III subunit C11 [Transcri	80.64
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	80.59
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.52
PRK10083	339	putative oxidoreductase; Provisional	80.41
KOG2782	303	consensus Putative SAM dependent methyltransferase	80.39
PRK08306	296	dipicolinate synthase subunit A; Reviewed	80.33
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	80.09
COG4098	441	comFA Superfamily II DNA/RNA helicase required for	80.06

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.93  E-value=9.4e-26  Score=193.58  Aligned_cols=133  Identities=30%  Similarity=0.446  Sum_probs=120.6

Q ss_pred             ChhhHHHHHHhHHHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 021344          128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY  207 (314)
Q Consensus       128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~  207 (314)
                      |+.+|++.++.|++.               +.+.+...+|.+|||+|||||.++..+++.....+|+|+|+|+.|++.|+
T Consensus        28 n~~~S~g~~~~Wr~~---------------~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~   92 (238)
T COG2226          28 NDLMSFGLHRLWRRA---------------LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR   92 (238)
T ss_pred             cccccCcchHHHHHH---------------HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence            789999999999984               33344445799999999999999999999976789999999999999999


Q ss_pred             HHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       208 ~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++....+.   .+++|+++|++++||++++||+|++.++|++++|++++|+|++|+|||||++++.+.+.+
T Consensus        93 ~k~~~~~~---~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226          93 EKLKKKGV---QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             HHhhccCc---cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            99988763   449999999999999999999999999999999999999999999999999999998765

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.92  E-value=9.9e-25  Score=194.38  Aligned_cols=177  Identities=22%  Similarity=0.427  Sum_probs=126.1

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccCccCcccccccccccccChhhHHHHHHhH
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGW  139 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w  139 (314)
                      +|+||+|++++....           ..++|.+++++...++||+++++..........  ...+++..           
T Consensus         2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~--d~~~~~~a-----------   57 (272)
T PRK11088          2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG--DNKEMMQA-----------   57 (272)
T ss_pred             cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCC--cCHHHHHH-----------
Confidence            489999999996533           579999966666999999999975332221110  11122221           


Q ss_pred             HHhcccCCCCCc--hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcC
Q 021344          140 RQNFNRSGFPGP--DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDN  214 (314)
Q Consensus       140 ~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~~~~~a~~~~~~~~  214 (314)
                      ++.|.+.+++.+  +...+.+.+.+. ....+|||+|||+|.++..+++..+.   .+++|+|+|+.+++.|+++     
T Consensus        58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----  131 (272)
T PRK11088         58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----  131 (272)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence            334444443222  122234444443 34578999999999999999876532   3799999999999999874     


Q ss_pred             CCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          215 TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       215 ~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                         ..++.+..+|+.++|+++++||+|++...       ...++++.|+|||||++++.++.
T Consensus       132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~  183 (272)
T PRK11088        132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPG  183 (272)
T ss_pred             ---CCCCeEEEeecccCCCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCC
Confidence               25788999999999999999999998654       12468999999999999998844

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.91  E-value=2.2e-24  Score=186.84  Aligned_cols=133  Identities=30%  Similarity=0.534  Sum_probs=92.9

Q ss_pred             ChhhHHHHHHhHHHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHH
Q 021344          128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQC  206 (314)
Q Consensus       128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a  206 (314)
                      |...|++.++.|++.               +.+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|
T Consensus        24 n~~ls~g~~~~wr~~---------------~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a   88 (233)
T PF01209_consen   24 NDLLSFGQDRRWRRK---------------LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVA   88 (233)
T ss_dssp             -------------SH---------------HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHH
T ss_pred             ccccCCcHHHHHHHH---------------HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHH
Confidence            678899999999973               344556677889999999999999999886 4567999999999999999


Q ss_pred             HHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          207 YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       207 ~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +++.+..+.   .+++++++|++++|+++++||+|++.+++++++|+.+.++|++|+|||||++++.+++.+
T Consensus        89 ~~k~~~~~~---~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p  157 (233)
T PF01209_consen   89 RKKLKREGL---QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP  157 (233)
T ss_dssp             HHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred             HHHHHhhCC---CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence            999988752   599999999999999999999999999999999999999999999999999999998764

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.86  E-value=2.2e-21  Score=163.79  Aligned_cols=136  Identities=23%  Similarity=0.284  Sum_probs=120.7

Q ss_pred             ChhhHHHHHHhHHHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC------CeEEEEeCCHH
Q 021344          128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY------SGVVALDFSEN  201 (314)
Q Consensus       128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~------~~v~giD~s~~  201 (314)
                      |+.+|.+.++.|+..               ....+.+.++.++||++||||..+..+.++-..      .+|+++|+++.
T Consensus        77 ND~mSlGiHRlWKd~---------------~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~  141 (296)
T KOG1540|consen   77 NDAMSLGIHRLWKDM---------------FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH  141 (296)
T ss_pred             HHHhhcchhHHHHHH---------------hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH
Confidence            889999999999874               444777788899999999999999888887443      69999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          202 MLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       202 ~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      |+..++++.++.++.....+.++.+|++++||++++||..++.+.|.+++++++.|++++|+|||||++.+.+++..
T Consensus       142 mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv  218 (296)
T KOG1540|consen  142 MLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV  218 (296)
T ss_pred             HHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence            99999999877654333459999999999999999999999999999999999999999999999999999998764

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.86  E-value=4e-21  Score=169.90  Aligned_cols=120  Identities=23%  Similarity=0.361  Sum_probs=102.2

Q ss_pred             HHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc
Q 021344          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~  237 (314)
                      .+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|+++..........+++++++|++++|+++++
T Consensus        66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~s  145 (261)
T PLN02233         66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCY  145 (261)
T ss_pred             HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCC
Confidence            34555667889999999999999988876 45569999999999999998865421100235899999999999999999


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ||+|++.++++|++|+..+++++.|+|||||++++.++...
T Consensus       146 fD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~  186 (261)
T PLN02233        146 FDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS  186 (261)
T ss_pred             EeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence            99999999999999999999999999999999999998754

>PLN02244 tocopherol O-methyltransferase

Probab=99.83  E-value=1.1e-19  Score=166.68  Aligned_cols=120  Identities=22%  Similarity=0.298  Sum_probs=104.7

Q ss_pred             HHHHHHHhcc-----CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 021344          155 FKMAQEYFKS-----AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (314)
Q Consensus       155 ~~~l~~~l~~-----~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  229 (314)
                      .+.+.+.+..     .++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.+..+  ...++.++.+|+.
T Consensus       102 ~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~  178 (340)
T PLN02244        102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADAL  178 (340)
T ss_pred             HHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCcc
Confidence            3344444444     567899999999999999999875 4599999999999999999887765  3467999999999


Q ss_pred             CCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++|+++++||+|++..+++|++|+..+++++.++|||||++++.++..
T Consensus       179 ~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~  226 (340)
T PLN02244        179 NQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH  226 (340)
T ss_pred             cCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            999999999999999999999999999999999999999999988654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.83  E-value=9.2e-21  Score=160.11  Aligned_cols=108  Identities=26%  Similarity=0.403  Sum_probs=99.2

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      -++.+|||||||.|.++..+++.|.  +|+|+|+++..++.|+....+.+    ..+++.+.+++++....++||+|+|.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhcCCCccEEEEh
Confidence            3688999999999999999999996  99999999999999999888766    45778888888877666899999999


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .||||++||..+++.+.+.+||||.+++++.++.
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt  165 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT  165 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence            9999999999999999999999999999998865

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.82  E-value=4.1e-20  Score=137.57  Aligned_cols=95  Identities=34%  Similarity=0.579  Sum_probs=84.4

Q ss_pred             EEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccC
Q 021344          171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW  250 (314)
Q Consensus       171 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~  250 (314)
                      ||+|||+|.++..+++. +..+++++|+++.+++.++++...      .++.+..+|++++|+++++||+|++..+++|+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence            89999999999999999 345999999999999999998754      45679999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhhcccCcEEEE
Q 021344          251 PSPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       251 ~d~~~~l~~i~r~LkpGG~l~i  272 (314)
                      .++.++++++.|+|||||++++
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEeC
Confidence            9999999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.80  E-value=2.1e-19  Score=162.36  Aligned_cols=108  Identities=22%  Similarity=0.314  Sum_probs=96.7

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.|+++....+  ...++.++++|++++++.+++||+|++.+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~l~~~~~~FD~Vi~~~  206 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEKLADEGRKFDAVLSLE  206 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHHhhhccCCCCEEEEhh
Confidence            567999999999999999988765  99999999999999998765543  23589999999999888888999999999


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +|||+.|+..+++++.++|||||.+++.+..+
T Consensus       207 vLeHv~d~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        207 VIEHVANPAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence            99999999999999999999999999998654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.79  E-value=1.1e-18  Score=151.94  Aligned_cols=119  Identities=29%  Similarity=0.430  Sum_probs=104.6

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      +.+.+.+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.++++.+..+   ..+++++.+|+..++++
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~  111 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVHGNAMELPFD  111 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEechhcCCCC
Confidence            35556677777889999999999999999877 455699999999999999999887654   26899999999988888


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +++||+|++..+++|++++..+++++.++|||||++++.+...
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  154 (231)
T TIGR02752       112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ  154 (231)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence            8899999999999999999999999999999999999887544

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.78  E-value=1.6e-18  Score=141.14  Aligned_cols=107  Identities=22%  Similarity=0.464  Sum_probs=96.6

Q ss_pred             CCCeEEEEcCcccHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhhe
Q 021344          166 QGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH  242 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~-~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~  242 (314)
                      ++.+|||+|||+|.++..++ ..++..+++|+|+|+.+++.|+++++..+.   .+++++++|+.+++  ++ ++||+|+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~l~~~~~-~~~D~I~   78 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIEDLPQELE-EKFDIII   78 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhccccccC-CCeeEEE
Confidence            57799999999999999999 456677999999999999999999888763   58999999999977  55 7899999


Q ss_pred             ecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +..+++|+.++..+++++.++||+||.+++..+.
T Consensus        79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9999999999999999999999999999998865

...

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.78  E-value=1.8e-18  Score=152.85  Aligned_cols=109  Identities=20%  Similarity=0.191  Sum_probs=96.4

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|++          .+++++.+|++.++ +++
T Consensus        20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~~   88 (255)
T PRK14103         20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PKP   88 (255)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CCC
Confidence            4556666677889999999999999999998766799999999999999976          46889999998775 467


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +||+|++..++||++|+..+++++.++|||||++++..+.
T Consensus        89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            8999999999999999999999999999999999987643

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.77  E-value=3.9e-18  Score=150.98  Aligned_cols=124  Identities=13%  Similarity=0.144  Sum_probs=106.9

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      ++..+....+.+.+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.++++...     ..++.+..+|+
T Consensus        35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~  108 (263)
T PTZ00098         35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDI  108 (263)
T ss_pred             CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCc
Confidence            4445556777778888889999999999999999887754 45999999999999999987653     25799999999


Q ss_pred             CCCCCCCCchhhheecchhccCC--CHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          229 CRLPFASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ...|+++++||+|++..+++|++  ++..+++++.++|||||++++.++...
T Consensus       109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~  160 (263)
T PTZ00098        109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD  160 (263)
T ss_pred             ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence            98888889999999999999987  788999999999999999999887653

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.77  E-value=1.2e-18  Score=134.14  Aligned_cols=106  Identities=27%  Similarity=0.426  Sum_probs=88.9

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCCCCCCchhhheec
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~lp~~~~~fD~V~~~  244 (314)
                      |+.+|||+|||+|.++..+++..+..+++|+|+|+.+++.++++....+  ...+++++++|+ ..... .+.||+|++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~-~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG--LSDRITFVQGDAEFDPDF-LEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECccccCccc-CCCCCEEEEC
Confidence            4789999999999999999996556699999999999999999995544  458999999999 33333 3569999999


Q ss_pred             c-hhccCC---CHHHHHHHHHhhcccCcEEEEEe
Q 021344          245 A-ALHCWP---SPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       245 ~-vl~h~~---d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      . .++++.   +...+++++.+.|+|||++++.+
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            8 555443   45789999999999999999976

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.77  E-value=3.2e-18  Score=151.19  Aligned_cols=115  Identities=17%  Similarity=0.256  Sum_probs=99.3

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCC
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASG  236 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~  236 (314)
                      +.+.+. .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++....+  ...+++++++|+.+++ +.++
T Consensus        37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~~~  111 (255)
T PRK11036         37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHLET  111 (255)
T ss_pred             HHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhcCC
Confidence            344444 3567999999999999999999875  99999999999999999988765  3467999999987763 5578


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +||+|++..+++|+.++..+++++.++|||||++++..++.
T Consensus       112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence            99999999999999999999999999999999999877553

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.75  E-value=1.1e-17  Score=147.41  Aligned_cols=114  Identities=27%  Similarity=0.378  Sum_probs=99.1

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.+.  +++++|+|+.+++.++++.        ....++.+|++.+|+
T Consensus        30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~   99 (251)
T PRK10258         30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPL   99 (251)
T ss_pred             HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcC
Confidence            344566666665678999999999999999988764  9999999999999998853        235688999999999


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++++||+|+++.+++|..|+..+++++.++|||||.+++.++..
T Consensus       100 ~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        100 ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            88899999999999999999999999999999999999998654

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.75  E-value=1.9e-18  Score=147.08  Aligned_cols=106  Identities=31%  Similarity=0.455  Sum_probs=91.6

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC----CeEEEEecCCCCCCCCCchhhhe
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS----NLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~----~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      +.+|||+|||+|.++..|++.|.  +|+|+|+++++++.|++...... ....    ++++.+.|++.+.   +.||+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~~---~~fDaVv  163 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGLT---GKFDAVV  163 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhcc---cccceee
Confidence            57899999999999999999987  99999999999999999844433 2233    3677777777653   4599999


Q ss_pred             ecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      |..|+||+.||+.++..+.++|||||.+++++..+.
T Consensus       164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt  199 (282)
T KOG1270|consen  164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT  199 (282)
T ss_pred             eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence            999999999999999999999999999999998774

>PRK05785 hypothetical protein; Provisional

Probab=99.75  E-value=1.6e-17  Score=143.79  Aligned_cols=90  Identities=32%  Similarity=0.358  Sum_probs=81.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++.+|||+|||+|.++..+++.+ ..+|+|+|+|++|++.|+++           ..++++|++.+|+++++||+|++.+
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~  118 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSF  118 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecC
Confidence            36799999999999999999885 34999999999999999862           2357899999999999999999999


Q ss_pred             hhccCCCHHHHHHHHHhhcccC
Q 021344          246 ALHCWPSPSNAVAEISRILRSG  267 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpG  267 (314)
                      +++|++|+..+++++.|+|||.
T Consensus       119 ~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        119 ALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             hhhccCCHHHHHHHHHHHhcCc
Confidence            9999999999999999999994

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.74  E-value=2.2e-17  Score=149.99  Aligned_cols=118  Identities=23%  Similarity=0.276  Sum_probs=98.1

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+.+...+....+.+|||||||+|.++..++..++. .|+|+|+|+.++..++......+  ...++.++.+|++++|+ 
T Consensus       111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp~-  186 (322)
T PRK15068        111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLPA-  186 (322)
T ss_pred             HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCCC-
Confidence            345566676567889999999999999999998753 69999999998876544322221  12579999999999998 


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +++||+|++..+++|+.++..++++++++|||||.+++.+..
T Consensus       187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~  228 (322)
T PRK15068        187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV  228 (322)
T ss_pred             cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence            788999999999999999999999999999999999997654

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.74  E-value=3.6e-17  Score=138.83  Aligned_cols=112  Identities=23%  Similarity=0.273  Sum_probs=94.1

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++....+.   .++++..+|+...++. +
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~~~~-~   94 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAENL---DNLHTAVVDLNNLTFD-G   94 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCC---CcceEEecChhhCCcC-C
Confidence            344455555678999999999999999999876  999999999999999998887652   5688999999877764 5


Q ss_pred             chhhheecchhccCC--CHHHHHHHHHhhcccCcEEEEEe
Q 021344          237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +||+|++..+++|++  +...+++++.++|||||++++..
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            799999999999886  45689999999999999965543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.73  E-value=6e-17  Score=155.48  Aligned_cols=120  Identities=18%  Similarity=0.206  Sum_probs=104.5

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+...++.+|||||||+|..+..+++.. +.+++|+|+|+.+++.|+++....    ..++.+..+|+...++
T Consensus       254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~  328 (475)
T PLN02336        254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY  328 (475)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence            45566666666678899999999999999888865 459999999999999999876533    3579999999998888


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++++||+|++..+++|++|+..++++++++|||||.+++.++...
T Consensus       329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  373 (475)
T PLN02336        329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS  373 (475)
T ss_pred             CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            888999999999999999999999999999999999999987654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.73  E-value=1.1e-16  Score=140.10  Aligned_cols=119  Identities=17%  Similarity=0.165  Sum_probs=107.2

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+.+.+.+...+|.+|||||||.|.++..+++.+ +.+|+|+++|+++.+.++++++..++  ..++++...|..++.  
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~~--  135 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDFE--  135 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEeccccccc--
Confidence            5677888899999999999999999999999997 66999999999999999999999984  478999999987764  


Q ss_pred             CCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEecccCC
Q 021344          235 SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                       +.||-|++..++||+..  ...+++.+.++|+|||++++.+.....
T Consensus       136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence             45999999999999986  789999999999999999998877654

>TIGR00452 methyltransferase, putative

Probab=99.72  E-value=7e-17  Score=145.38  Aligned_cols=117  Identities=21%  Similarity=0.205  Sum_probs=94.9

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      ..+...+...++++|||||||+|.++..++..++ ..|+|+|+|+.++..++...+...  ...++.+..+++++++.. 
T Consensus       111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~lp~~-  186 (314)
T TIGR00452       111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQLHEL-  186 (314)
T ss_pred             HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHCCCC-
Confidence            3455566666788999999999999999988875 379999999999876543222111  125788888999888754 


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++||+|++.++++|+.+|..+|++++++|||||.|++.+..
T Consensus       187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~  227 (314)
T TIGR00452       187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLV  227 (314)
T ss_pred             CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence            47999999999999999999999999999999999998754

Known examples to date are restricted to the proteobacteria.

>PRK08317 hypothetical protein; Provisional

Probab=99.72  E-value=1.1e-16  Score=139.45  Aligned_cols=118  Identities=33%  Similarity=0.432  Sum_probs=103.1

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      .+.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++....    ..++.+..+|+...++
T Consensus         8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~   83 (241)
T PRK08317          8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPF   83 (241)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCC
Confidence            3455666777788999999999999999998875 5679999999999999999873332    3689999999988888


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+++||+|++..+++|+.++..+++++.++|||||.+++.++.
T Consensus        84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            8889999999999999999999999999999999999998754

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.72  E-value=6.3e-17  Score=143.14  Aligned_cols=111  Identities=19%  Similarity=0.281  Sum_probs=96.4

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      +.+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.++++.        .++.++.+|+..+. .+
T Consensus        21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~-~~   91 (258)
T PRK01683         21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ-PP   91 (258)
T ss_pred             HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC-CC
Confidence            3455566666788999999999999999998876779999999999999998853        56889999997764 35


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++||+|+++.+++|++|+..+++++.++|||||.+++..+
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence            6899999999999999999999999999999999999753

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.72  E-value=1.9e-16  Score=139.19  Aligned_cols=125  Identities=17%  Similarity=0.274  Sum_probs=99.9

Q ss_pred             CCchHHHHHHHHHhc--cCCCCeEEEEcCcccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEE
Q 021344          149 PGPDEEFKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~--~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~  224 (314)
                      |..+.....+...+.  ..++.+|||||||+|..+..+++.  .++.+++|+|+|+.|++.|++++...+  ...+++++
T Consensus        37 p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~  114 (247)
T PRK15451         37 PGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVI  114 (247)
T ss_pred             CChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEE
Confidence            444444444433321  235789999999999999888873  456799999999999999999988765  23589999


Q ss_pred             EecCCCCCCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          225 RADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++|+..++++  .+|+|++..++||+++.  ..++++++++|||||.+++.+...
T Consensus       115 ~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~  167 (247)
T PRK15451        115 EGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  167 (247)
T ss_pred             eCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            9999888764  49999999999999754  579999999999999999988543

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.71  E-value=3e-17  Score=134.28  Aligned_cols=106  Identities=29%  Similarity=0.520  Sum_probs=87.7

Q ss_pred             HHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      .+..+.. ..++.+|||||||+|.++..+++.+.  +++|+|+++.+++.  .           ++.....+....+.++
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~   76 (161)
T PF13489_consen   12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPD   76 (161)
T ss_dssp             HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHS
T ss_pred             HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccc
Confidence            4444443 45688999999999999999988876  99999999999887  1           2333444444555567


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++||+|++..+|+|++|+..+|+++.++|||||++++.++..
T Consensus        77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             cchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            899999999999999999999999999999999999999765

...

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.71  E-value=9.2e-17  Score=136.09  Aligned_cols=113  Identities=18%  Similarity=0.201  Sum_probs=92.7

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++....+    .++.+..+|+...+++ +
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~   93 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKAREN----LPLRTDAYDINAAALN-E   93 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhC----CCceeEeccchhcccc-C
Confidence            344555555678999999999999999999875  99999999999999999887665    3477888888766654 5


Q ss_pred             chhhheecchhccCC--CHHHHHHHHHhhcccCcEEEEEecc
Q 021344          237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +||+|++..+++|++  +...+++++.++|||||++++.++.
T Consensus        94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~  135 (195)
T TIGR00477        94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAM  135 (195)
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEec
Confidence            799999999999985  3468999999999999997666543

Part of a tellurite-reducing operon tehA and tehB

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.71  E-value=6.7e-17  Score=143.17  Aligned_cols=118  Identities=20%  Similarity=0.237  Sum_probs=95.3

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+..++|.+|||||||.|.++..++++. +++|+|+++|+...+.++++++..+  ...++++...|..+++.
T Consensus        50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~~~~  126 (273)
T PF02353_consen   50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRDLPG  126 (273)
T ss_dssp             HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG---
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeeccccCC
Confidence            35577778888999999999999999999999994 4599999999999999999999988  45789999999887653


Q ss_pred             CCCchhhheecchhccCC--CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 ASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                         +||.|++..++||+.  +...+++++.++|||||++++.+...
T Consensus       127 ---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~  169 (273)
T PF02353_consen  127 ---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH  169 (273)
T ss_dssp             ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred             ---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence               899999999999995  56899999999999999999877655

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.71  E-value=1.8e-16  Score=141.31  Aligned_cols=113  Identities=20%  Similarity=0.340  Sum_probs=99.0

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhh
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~  240 (314)
                      ....++.+|||+|||+|..+..+++. ++..+|+|+|+++.+++.|+++....+.   .+++++.+|++.+++++++||+
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~---~~v~~~~~d~~~l~~~~~~fD~  149 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY---TNVEFRLGEIEALPVADNSVDV  149 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC---CCEEEEEcchhhCCCCCCceeE
Confidence            34557889999999999988776665 5555899999999999999998877652   5899999999999988889999


Q ss_pred             heecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      |++..+++|.++...+++++.++|||||++++.++..
T Consensus       150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~  186 (272)
T PRK11873        150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL  186 (272)
T ss_pred             EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence            9999999999999999999999999999999987654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.70  E-value=1.8e-16  Score=137.20  Aligned_cols=106  Identities=21%  Similarity=0.269  Sum_probs=95.1

Q ss_pred             CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchh
Q 021344          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL  247 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl  247 (314)
                      ++|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...+  ...++.++..|+...+++ ++||+|++..++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l   77 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI   77 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence            37999999999999999988766799999999999999999988766  356899999999776664 589999999999


Q ss_pred             ccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          248 HCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       248 ~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +|+.++..+++++.++|||||++++.++.
T Consensus        78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       78 HHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             HhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            99999999999999999999999998864

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.70  E-value=1.7e-16  Score=138.31  Aligned_cols=105  Identities=28%  Similarity=0.464  Sum_probs=95.2

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      .+.+|||+|||+|.++..+++.++..+++++|+++.+++.++++..       .++.++.+|+...++++++||+|++.+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~  106 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNL  106 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence            4578999999999999999999887789999999999999988542       468899999999888888999999999


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +++|+.++..+++++.++|||||.+++.++..
T Consensus       107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072       107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            99999999999999999999999999988654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.69  E-value=2.2e-16  Score=129.54  Aligned_cols=117  Identities=23%  Similarity=0.323  Sum_probs=100.2

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeE-EEEecCCCCC-CCC
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-FAS  235 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~-~~~~d~~~lp-~~~  235 (314)
                      +..++.......+|+||||+|..-...... +..+|+++|+++.|.+.+.+.+++..   ..++. |+.++.+++| +++
T Consensus        68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l~d  143 (252)
T KOG4300|consen   68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQLAD  143 (252)
T ss_pred             hHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCccccc
Confidence            334555545567899999999987765533 45699999999999999999988874   46776 9999999998 889


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +++|+|++..+|.-+.|+.+.|+++.|+|+|||++++.+..+.
T Consensus       144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~  186 (252)
T KOG4300|consen  144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAG  186 (252)
T ss_pred             CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence            9999999999999999999999999999999999999997764

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.69  E-value=3e-16  Score=142.39  Aligned_cols=105  Identities=23%  Similarity=0.356  Sum_probs=93.5

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||||||+|.++..+++..+..+++++|+|+.+++.|+++...      .+++++.+|++++++++++||+|++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp~~~~sFDvVIs~  185 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLPFPTDYADRYVSA  185 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCCCCCCceeEEEEc
Confidence            356799999999999998888775556999999999999999986532      46889999999999888999999999


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .+++|++++..+++++.++|||||++++...
T Consensus       186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999999999999999999999999988754

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.69  E-value=6e-16  Score=129.62  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=89.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++.+|||+|||+|..+..++...+..+|+++|+++.+++.|+++.+..+.   .+++++.+|+.+++. .++||+|++..
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL---KNVTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC---CCEEEEeccHhhCCC-CCCccEEEEcc
Confidence            37899999999999999998877677999999999999999999988763   469999999988776 67899999865


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                          +.++..+++++.+.|||||++++..
T Consensus       121 ----~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        121 ----VASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             ----ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence                4678899999999999999999886

>TIGR00740 methyltransferase, putative

Probab=99.68  E-value=5.5e-16  Score=135.61  Aligned_cols=108  Identities=17%  Similarity=0.245  Sum_probs=93.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ++.+|||+|||+|.++..+++..  ++.+++|+|+|+.+++.|+++++..+  ...+++++++|+..++++  .+|+|++
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~d~v~~  128 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEIK--NASMVIL  128 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCCCC--CCCEEee
Confidence            57799999999999999998863  56799999999999999999887654  235799999999988765  5899999


Q ss_pred             cchhccCCC--HHHHHHHHHhhcccCcEEEEEeccc
Q 021344          244 GAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       244 ~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ..+++|+++  +..+++++.++|||||.+++.++..
T Consensus       129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            999999974  4689999999999999999998654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.68  E-value=5.7e-17  Score=122.62  Aligned_cols=95  Identities=32%  Similarity=0.552  Sum_probs=80.5

Q ss_pred             EEEEcCcccHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec-c
Q 021344          170 LVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-A  245 (314)
Q Consensus       170 iLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~-~  245 (314)
                      |||+|||+|..+..+.+..   +..+++|+|+|+.+++.++++....+    .+++++++|+.++++.+++||+|++. .
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            7999999999999999885   33699999999999999999887754    58999999999999888899999995 5


Q ss_pred             hhccCCCH--HHHHHHHHhhcccCc
Q 021344          246 ALHCWPSP--SNAVAEISRILRSGG  268 (314)
Q Consensus       246 vl~h~~d~--~~~l~~i~r~LkpGG  268 (314)
                      +++|+.+.  ..+++++.++|||||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            59998754  589999999999998

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.68  E-value=6.4e-18  Score=127.30  Aligned_cols=97  Identities=25%  Similarity=0.379  Sum_probs=66.7

Q ss_pred             EEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhheecchhc
Q 021344          171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALH  248 (314)
Q Consensus       171 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~~~~vl~  248 (314)
                      ||||||+|.++..+....+..+++|+|+|+.+++.+++++....   ..+...+..+..+..  ...++||+|++..++|
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence            79999999999999999777799999999999999988888754   234444444443322  1125899999999999


Q ss_pred             cCCCHHHHHHHHHhhcccCcEE
Q 021344          249 CWPSPSNAVAEISRILRSGGVF  270 (314)
Q Consensus       249 h~~d~~~~l~~i~r~LkpGG~l  270 (314)
                      |++++..+++++.++|||||+|
T Consensus        78 ~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhhHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.66  E-value=1.2e-15  Score=136.99  Aligned_cols=103  Identities=18%  Similarity=0.217  Sum_probs=89.2

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++++|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++.+..+    .++++...|+...++ +++||+|++..
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~~~  192 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILSTV  192 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEEcc
Confidence            456999999999999999999875  99999999999999999888765    478889999877655 67899999999


Q ss_pred             hhccCC--CHHHHHHHHHhhcccCcEEEEEec
Q 021344          246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       246 vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +++|++  +...+++++.++|||||++++...
T Consensus       193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~  224 (287)
T PRK12335        193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA  224 (287)
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            999986  446899999999999999776543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.66  E-value=2.3e-15  Score=117.66  Aligned_cols=115  Identities=23%  Similarity=0.219  Sum_probs=93.3

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF  233 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~  233 (314)
                      ...+.+.+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++..+.   .+++++.+|+.. ++.
T Consensus         8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~   84 (124)
T TIGR02469         8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV---SNIVIVEGDAPEALED   84 (124)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC---CceEEEeccccccChh
Confidence            3445566666667899999999999999999987667999999999999999998887652   578999998764 333


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ..++||+|++....++   ...+++++.+.|||||++++...
T Consensus        85 ~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        85 SLPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             hcCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence            3468999999776543   35889999999999999998763

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.65  E-value=9.3e-16  Score=134.35  Aligned_cols=119  Identities=21%  Similarity=0.272  Sum_probs=94.0

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      ++++...+..-.+++|||||||+|+++..++..|+ ..|+|+|++.....+.+-.-+-.+  ....+..+-..++++|. 
T Consensus       104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg--~~~~~~~lplgvE~Lp~-  179 (315)
T PF08003_consen  104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLG--QDPPVFELPLGVEDLPN-  179 (315)
T ss_pred             HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhC--CCccEEEcCcchhhccc-
Confidence            45677777666899999999999999999999986 479999999876555333222221  11334444456678887 


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .++||+|++.+||.|..+|...|++++..|+|||.+++.|..-
T Consensus       180 ~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi  222 (315)
T PF08003_consen  180 LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVI  222 (315)
T ss_pred             cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence            7889999999999999999999999999999999999988653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.65  E-value=3.9e-15  Score=129.78  Aligned_cols=119  Identities=30%  Similarity=0.475  Sum_probs=102.4

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      .+...+...++.+|||+|||+|.++..++..++ ..+++++|+++.+++.+++++...+  ...++.++.+|+...++.+
T Consensus        42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~  119 (239)
T PRK00216         42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALPFPD  119 (239)
T ss_pred             HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCCCCC
Confidence            444455555678999999999999999998875 5799999999999999999876543  2357899999998888777


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++||+|++..+++|+.++..+++++.++|+|||++++.+...
T Consensus       120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  161 (239)
T PRK00216        120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSK  161 (239)
T ss_pred             CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence            899999999999999999999999999999999999887654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.64  E-value=5e-15  Score=126.78  Aligned_cols=111  Identities=24%  Similarity=0.242  Sum_probs=88.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------CCCCCCeEEEEecCCCCCCC-
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA-  234 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~v~~~~~d~~~lp~~-  234 (314)
                      .++.+|||+|||.|..+..|+++|.  +|+|+|+|+.+++.+.+......         .....+++++++|+.+++.. 
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            4578999999999999999999987  99999999999998644221100         00125799999999887642 


Q ss_pred             CCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .++||.|+...+++|++..  ..+++.+.++|||||++++.++..
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~  155 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY  155 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence            3579999999999999644  368999999999999887777654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK06922 hypothetical protein; Provisional

Probab=99.64  E-value=1.5e-15  Score=145.94  Aligned_cols=109  Identities=18%  Similarity=0.294  Sum_probs=94.5

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhh
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDA  240 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~  240 (314)
                      ...++.+|||+|||+|.++..+++..++.+++|+|+|+.+++.|+++....+    .++.++++|+.++|  +++++||+
T Consensus       415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g----~~ie~I~gDa~dLp~~fedeSFDv  490 (677)
T PRK06922        415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG----RSWNVIKGDAINLSSSFEKESVDT  490 (677)
T ss_pred             hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CCeEEEEcchHhCccccCCCCEEE
Confidence            3346789999999999999999988778899999999999999998765543    57888999998877  77889999


Q ss_pred             heecchhccCC-------------CHHHHHHHHHhhcccCcEEEEEec
Q 021344          241 VHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       241 V~~~~vl~h~~-------------d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      |+++.++||+.             ++..+++++.++|||||.+++.+.
T Consensus       491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            99999998762             457899999999999999999874

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.64  E-value=3.2e-15  Score=124.61  Aligned_cols=113  Identities=19%  Similarity=0.268  Sum_probs=91.1

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~  237 (314)
                      +.+.++..+++++||+|||.|+.+.+|++.|.  .|+++|.|+..++.+++..+..+    ..++....|+....++ +.
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~~   94 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-EE   94 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-TT
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-CC
Confidence            34445555678999999999999999999998  99999999999999998887766    5699999999887775 67


Q ss_pred             hhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          238 VDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ||+|++..|++|++..  ..+++.+...++|||++++.++..
T Consensus        95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~  136 (192)
T PF03848_consen   95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME  136 (192)
T ss_dssp             EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred             cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence            9999999999998744  468999999999999999876644

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.63  E-value=4.4e-15  Score=128.12  Aligned_cols=116  Identities=29%  Similarity=0.417  Sum_probs=100.1

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      .+.+.+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++.. .    ..++.++.+|+.+.++.+
T Consensus        30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~~  104 (223)
T TIGR01934        30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFED  104 (223)
T ss_pred             HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCCC
Confidence            3344444557889999999999999999988764 689999999999999998765 1    257899999999888777


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++||+|++.++++|+.++..+++++.+.|+|||++++.++..
T Consensus       105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  146 (223)
T TIGR01934       105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK  146 (223)
T ss_pred             CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            899999999999999999999999999999999999987654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.63  E-value=1.7e-15  Score=125.34  Aligned_cols=112  Identities=19%  Similarity=0.202  Sum_probs=100.7

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+...++.....+|.|+|||+|..+..|+++.+...++|+|-|++|++.|+++        ..+++|..+|+.... ++.
T Consensus        21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~~   91 (257)
T COG4106          21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PEQ   91 (257)
T ss_pred             HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CCC
Confidence            45556677778899999999999999999999999999999999999999885        378999999998864 356


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .+|+++++.+|++++|-..+|..+...|.|||+|.+..+..
T Consensus        92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             ccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence            79999999999999999999999999999999999988654

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.62  E-value=6.5e-15  Score=123.04  Aligned_cols=101  Identities=15%  Similarity=0.204  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++.+|||+|||+|.++..++..++..+|+|+|+++.+++.++++.+..+.   .+++++++|+.+++ .+++||+|++..
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d~~~~~-~~~~fD~I~s~~  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGRAEDFQ-HEEQFDVITSRA  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecchhhcc-ccCCccEEEehh
Confidence            47899999999999999988877777999999999999999998887652   57999999998864 357899999875


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                          +.+...+++.+.++|||||++++..
T Consensus       118 ----~~~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       118 ----LASLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             ----hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence                3456678899999999999999875

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.62  E-value=3.3e-15  Score=127.28  Aligned_cols=107  Identities=20%  Similarity=0.236  Sum_probs=89.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCC--CCCCchhhhe
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP--FASGFVDAVH  242 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~lp--~~~~~fD~V~  242 (314)
                      ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.++++++..+.   .++.++++|+ ..++  +++++||+|+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL---TNLRLLCGDAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC---CCEEEEecCHHHHHHHHcCccccceEE
Confidence            57799999999999999999887777999999999999999998887652   6799999999 6665  6678999999


Q ss_pred             ecchhccCC--------CHHHHHHHHHhhcccCcEEEEEec
Q 021344          243 AGAALHCWP--------SPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       243 ~~~vl~h~~--------d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +.+...+..        ....+++++.++|||||++++.+.
T Consensus       117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~  157 (202)
T PRK00121        117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD  157 (202)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence            876543221        136789999999999999999873

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.61  E-value=1.1e-14  Score=124.35  Aligned_cols=113  Identities=20%  Similarity=0.190  Sum_probs=92.2

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ....+.+.+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.|+++++..+  ...+++++.+|+.+..
T Consensus        60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~  137 (205)
T PRK13944         60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGL  137 (205)
T ss_pred             HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCC
Confidence            34566677777788999999999999998888763 24589999999999999999988765  2346999999997754


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ...++||+|++..+++|++      +++.+.|||||++++..
T Consensus       138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence            4457899999999888774      46789999999998865

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.61  E-value=8.2e-15  Score=124.79  Aligned_cols=102  Identities=12%  Similarity=0.258  Sum_probs=85.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|+++.        .++.+..+|+.. |+++++||+|++.
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~~~  112 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVLTK  112 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEEEC
Confidence            3567899999999999999988755569999999999999998753        457788999887 8888999999999


Q ss_pred             chhccCCC--HHHHHHHHHhhcccCcEEEEEeccc
Q 021344          245 AALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       245 ~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .+++|++.  ..++++++.+++  ++++++.++..
T Consensus       113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence            99999952  357888888887  56777777543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.61  E-value=7.4e-15  Score=136.44  Aligned_cols=114  Identities=17%  Similarity=0.180  Sum_probs=95.5

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      ...+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++...      .++++...|...+   
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---  225 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---  225 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence            4455666777788999999999999999998864 35999999999999999997742      3578888888665   


Q ss_pred             CCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEecccC
Q 021344          235 SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +++||+|++..+++|+.+  +..+++++.++|||||++++.+....
T Consensus       226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~  271 (383)
T PRK11705        226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN  271 (383)
T ss_pred             CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            468999999999999964  47899999999999999999876543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.60  E-value=2.3e-14  Score=129.96  Aligned_cols=120  Identities=15%  Similarity=0.114  Sum_probs=101.4

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+.+.+.+...+..+|||||||+|.++..+++.++..+++++|. +.+++.+++++...+  ...+++++.+|+.+.+++
T Consensus       138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~~~  214 (306)
T TIGR02716       138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESYP  214 (306)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCCCC
Confidence            34555666667778999999999999999999998889999997 789999999888876  356899999999876654


Q ss_pred             CCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecccCC
Q 021344          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                        .+|+|++.+++|++.+.  ..++++++++|||||++++.++....
T Consensus       215 --~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~  259 (306)
T TIGR02716       215 --EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD  259 (306)
T ss_pred             --CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence              36999999999998765  47999999999999999999875543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.59  E-value=7.1e-15  Score=121.29  Aligned_cols=109  Identities=17%  Similarity=0.257  Sum_probs=87.3

Q ss_pred             HHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchh
Q 021344          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD  239 (314)
                      ..++...-.++||+|||.|.++..|+.+..  +++++|+|+.+++.|++++...     .+|++.++|+.+. .++++||
T Consensus        37 aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~FD  108 (201)
T PF05401_consen   37 AALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRFD  108 (201)
T ss_dssp             HHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EE
T ss_pred             HhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCee
Confidence            346666667899999999999999999965  9999999999999999998753     6899999999764 4678999


Q ss_pred             hheecchhccCCCH---HHHHHHHHhhcccCcEEEEEecc
Q 021344          240 AVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       240 ~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +|+++.+++++.+.   ..+++.+...|+|||.+++.++.
T Consensus       109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            99999999999864   46899999999999999998864

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK06202 hypothetical protein; Provisional

Probab=99.59  E-value=1e-14  Score=127.07  Aligned_cols=108  Identities=18%  Similarity=0.233  Sum_probs=87.0

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~  237 (314)
                      +...++.+|||+|||+|.++..+++.    ++..+++|+|+|+.+++.|+++...      .++.+...+...++..+++
T Consensus        56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~  129 (232)
T PRK06202         56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGER  129 (232)
T ss_pred             cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCC
Confidence            33456779999999999998887753    4556999999999999999886532      3567777777777777789


Q ss_pred             hhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          238 VDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ||+|++++++||++++  ..+++++.++++  |.+++.+..+
T Consensus       130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence            9999999999999986  479999999998  6666666554

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.59  E-value=8.3e-15  Score=129.68  Aligned_cols=109  Identities=14%  Similarity=0.203  Sum_probs=85.9

Q ss_pred             CCCeEEEEcCcccH----HHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHh----cCCC----------------
Q 021344          166 QGGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ----DNTI----------------  216 (314)
Q Consensus       166 ~~~~iLDiGcG~G~----~~~~l~~~~~-----~~~v~giD~s~~~~~~a~~~~~~----~~~~----------------  216 (314)
                      ++.+|+|+|||+|.    ++..+++.++     +.+|+|+|+|+.+++.|++....    .+.+                
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45689999999996    4445555432     45899999999999999985310    0000                


Q ss_pred             ----CCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEe
Q 021344          217 ----LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       217 ----~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~  274 (314)
                          ...++.|.++|+.+.+++.++||+|+|.++++|++++.  .++++++++|||||++++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                01378999999998877788999999999999997554  79999999999999999865

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.58  E-value=3.5e-14  Score=125.79  Aligned_cols=106  Identities=11%  Similarity=0.095  Sum_probs=89.0

Q ss_pred             CCCeEEEEcCcccHHHH--HHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          166 QGGLLVDVSCGSGLFSR--KFAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~--~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ++.+|+|||||.|.++.  .++..+++.+++|+|+++++++.|++.++. .+  ...+++|..+|+.+.+...+.||+|+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g--L~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD--LSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC--ccCCcEEEECchhhcccccCCcCEEE
Confidence            67899999999884433  334457778999999999999999999864 44  35789999999987643356899999


Q ss_pred             ecchhccC--CCHHHHHHHHHhhcccCcEEEEEe
Q 021344          243 AGAALHCW--PSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       243 ~~~vl~h~--~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +. +++++  .++.++++++.+.|+|||++++..
T Consensus       201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            99 99988  688999999999999999999987

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.58  E-value=1.6e-14  Score=138.73  Aligned_cols=114  Identities=22%  Similarity=0.315  Sum_probs=95.7

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC--CCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPF  233 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~--~lp~  233 (314)
                      ..+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++...     ...++.++++|+.  .+++
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~-----~~~~i~~~~~d~~~~~~~~   99 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESING-----HYKNVKFMCADVTSPDLNI   99 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhc-----cCCceEEEEecccccccCC
Confidence            3555666666678999999999999999999865  99999999999988765322     1367999999986  4677


Q ss_pred             CCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecc
Q 021344          234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++++||+|++..+++|+++.  ..+++++.++|||||++++.+..
T Consensus       100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~  144 (475)
T PLN02336        100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC  144 (475)
T ss_pred             CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            78899999999999999874  68999999999999999997654

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.58  E-value=3.6e-14  Score=121.75  Aligned_cols=113  Identities=17%  Similarity=0.166  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .....+.+.+...++.+|||||||+|+++..+++.. ...+|+++|+++.+++.++++++..+.   .+++++.+|....
T Consensus        63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~---~~v~~~~gd~~~~  139 (212)
T PRK13942         63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY---DNVEVIVGDGTLG  139 (212)
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEECCcccC
Confidence            345567777788889999999999999998888763 345999999999999999999987652   6899999998776


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ....+.||+|++....++++      +.+.+.|||||++++..
T Consensus       140 ~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        140 YEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence            55567899999987766552      45677899999998864

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.57  E-value=3.8e-14  Score=118.46  Aligned_cols=113  Identities=15%  Similarity=0.232  Sum_probs=93.0

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      ++...+...++.+|||+|||+|.++..++..++  +++++|+++.+++.++++++..+    .+++++.+|+.+.+  .+
T Consensus        10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~~   81 (179)
T TIGR00537        10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--RG   81 (179)
T ss_pred             HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--CC
Confidence            444555555678999999999999999999886  99999999999999999988765    46889999987654  45


Q ss_pred             chhhheecchhccCCC---------------------HHHHHHHHHhhcccCcEEEEEeccc
Q 021344          237 FVDAVHAGAALHCWPS---------------------PSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d---------------------~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +||+|+++..+++.++                     ...+++++.++|||||.+++.....
T Consensus        82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~  143 (179)
T TIGR00537        82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL  143 (179)
T ss_pred             cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence            8999999887776653                     2467999999999999999987543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.57  E-value=5.1e-14  Score=118.56  Aligned_cols=114  Identities=19%  Similarity=0.166  Sum_probs=93.2

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ....+...+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.+++++...+.   .+++++.+|+.. ++
T Consensus        19 ~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~d~~~-~~   94 (187)
T PRK08287         19 VRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPGEAPI-EL   94 (187)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEecCchh-hc
Confidence            34455567777778899999999999999999988777999999999999999998877652   478999988742 33


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       .++||+|++....++   ...+++.+.+.|||||++++...
T Consensus        95 -~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         95 -PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             -CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEe
Confidence             357999998766543   46789999999999999988653

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.57  E-value=4e-14  Score=123.32  Aligned_cols=116  Identities=22%  Similarity=0.336  Sum_probs=97.9

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-C
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F  233 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~  233 (314)
                      ++.+...+...++.+|||||||+|.++..+.+.+.  +++++|+++.+++.+++++...+    ..+.+...|+...+ .
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~  110 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAE  110 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhh
Confidence            34555555556788999999999999999988764  89999999999999998877654    46788888877654 3


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+++||+|++.++++|++++..+++.+.+.|+|||.+++..+.
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence            4578999999999999999999999999999999999988754

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.56  E-value=1.5e-14  Score=122.50  Aligned_cols=107  Identities=19%  Similarity=0.268  Sum_probs=87.9

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCchhhhe
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH  242 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~fD~V~  242 (314)
                      ...++||||||+|.++..+++..++..++|+|+++.+++.|++++...+.   .++.++++|+.+++   ++++++|.|+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l---~ni~~i~~d~~~~~~~~~~~~~~d~v~   92 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL---KNLHVLCGDANELLDKFFPDGSLSKVF   92 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC---CCEEEEccCHHHHHHhhCCCCceeEEE
Confidence            45689999999999999999998888999999999999999998887763   58999999997643   4456899998


Q ss_pred             ecchhccCCC--------HHHHHHHHHhhcccCcEEEEEec
Q 021344          243 AGAALHCWPS--------PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       243 ~~~vl~h~~d--------~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +.+...+...        ...+++++.++|||||.+++.+.
T Consensus        93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td  133 (194)
T TIGR00091        93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD  133 (194)
T ss_pred             EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence            7654322211        14689999999999999999883

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.56  E-value=5.2e-14  Score=121.46  Aligned_cols=111  Identities=23%  Similarity=0.383  Sum_probs=90.4

Q ss_pred             HHHHHHHhc--cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          155 FKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       155 ~~~l~~~l~--~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .+.+.+++.  ..++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.|++++...+  ...++.+..+|+..++
T Consensus        42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~  117 (219)
T TIGR02021        42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSLC  117 (219)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhCC
Confidence            344555555  45678999999999999999998764  99999999999999999887654  2247999999998765


Q ss_pred             CCCCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEE
Q 021344          233 FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i  272 (314)
                         ++||+|++..+++|++.  ...+++++.+++++++++.+
T Consensus       118 ---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       118 ---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             ---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence               68999999999999864  46789999999887665544

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.56  E-value=3.3e-14  Score=130.36  Aligned_cols=111  Identities=22%  Similarity=0.289  Sum_probs=94.1

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFA  234 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~  234 (314)
                      .+.+.+....+..+||||||+|.++..+++..++..++|+|+++.+++.+.+++...++   .++.++++|+..+  .++
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL---~NV~~i~~DA~~ll~~~~  189 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL---KNLLIINYDARLLLELLP  189 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHhhhhCC
Confidence            34445555566799999999999999999998888999999999999999999888763   7899999998654  467


Q ss_pred             CCchhhheecchhccCCCH-----------HHHHHHHHhhcccCcEEEEEec
Q 021344          235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++++|.|++.+     ++|           ..+++++.|+|+|||.+.+.|-
T Consensus       190 ~~s~D~I~lnF-----PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        190 SNSVEKIFVHF-----PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             CCceeEEEEeC-----CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence            88999998754     454           5799999999999999999883

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.55  E-value=8.2e-14  Score=119.69  Aligned_cols=110  Identities=23%  Similarity=0.232  Sum_probs=85.7

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------CCCCCCeEEEEecCCCCCCC
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~v~~~~~d~~~lp~~  234 (314)
                      ..++.+|||+|||.|..+..|+++|.  +|+|+|+|+.+++.+.+......         .....++++.++|+.+++..
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            34578999999999999999999987  99999999999998743211000         00135789999999887533


Q ss_pred             -CCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEec
Q 021344          235 -SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 -~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       .+.||.|+...+++|++..  ..+++.+.++|||||++++.+.
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~  156 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL  156 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence             2579999999999999644  4789999999999997555443

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.55  E-value=2.4e-14  Score=117.94  Aligned_cols=103  Identities=17%  Similarity=0.337  Sum_probs=87.4

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-CCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PFA  234 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l-p~~  234 (314)
                      .+.+++.+  +.+|||+|||.|.++..|.+.. +.+.+|+|++++.+..+.+          ..+.++++|+++ + .|+
T Consensus         6 ~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~----------rGv~Viq~Dld~gL~~f~   72 (193)
T PF07021_consen    6 IIAEWIEP--GSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVA----------RGVSVIQGDLDEGLADFP   72 (193)
T ss_pred             HHHHHcCC--CCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHH----------cCCCEEECCHHHhHhhCC
Confidence            45555554  8899999999999999999863 6699999999999888877          678899999965 4 388


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +++||.|+++.+|+++.+|..+|+|+.|+   |...+++.+
T Consensus        73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFP  110 (193)
T PF07021_consen   73 DQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFP  110 (193)
T ss_pred             CCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEec
Confidence            99999999999999999999999999776   556666653

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.55  E-value=5.9e-14  Score=120.79  Aligned_cols=112  Identities=16%  Similarity=0.124  Sum_probs=92.2

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ....+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|+++++..+.   .+++++.+|.....
T Consensus        65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~---~~v~~~~~d~~~~~  141 (215)
T TIGR00080        65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL---DNVIVIVGDGTQGW  141 (215)
T ss_pred             HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC---CCeEEEECCcccCC
Confidence            445677777888899999999999999999988753 35699999999999999999988763   68999999987654


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ...++||+|++.....++      .+.+.+.|||||++++..
T Consensus       142 ~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       142 EPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV  177 (215)
T ss_pred             cccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence            445689999988766555      356788999999998865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.55  E-value=7.2e-14  Score=115.78  Aligned_cols=119  Identities=21%  Similarity=0.376  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .-...+.+.+...+..+|||+|||+|..+..+++.++..+|+++|+++.+++.++++++..+.   .+++++..|+.+. 
T Consensus        18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~-   93 (170)
T PF05175_consen   18 AGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEA-   93 (170)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTT-
T ss_pred             HHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc---ccccccccccccc-
Confidence            344566676666678899999999999999999999877799999999999999999999873   3399999998653 


Q ss_pred             CCCCchhhheecchhccCCC-----HHHHHHHHHhhcccCcEEEEEec
Q 021344          233 FASGFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d-----~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .++++||+|+++--++.-.+     ...++++..+.|||||.+++...
T Consensus        94 ~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen   94 LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            33689999999866554433     36789999999999999987663

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.55  E-value=7.6e-14  Score=120.74  Aligned_cols=106  Identities=25%  Similarity=0.363  Sum_probs=92.3

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-CCchhhheec
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~  244 (314)
                      .+.+|||+|||+|.++..+++.+.  .++++|+++.+++.+++++...+.   .++.+..+|+.+.+.. .++||+|++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~D~i~~~  119 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPL---LKIEYRCTSVEDLAEKGAKSFDVVTCM  119 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhcCCCCCccEEEeh
Confidence            477999999999999999988765  799999999999999998876541   2688999998776543 3789999999


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++++|+.++..+++++.++|+|||.+++.+..
T Consensus       120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            99999999999999999999999999988754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.51  E-value=3.4e-13  Score=114.56  Aligned_cols=116  Identities=16%  Similarity=0.255  Sum_probs=93.0

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-  231 (314)
                      ........+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.++++++..+  ...++.++.+|+.+. 
T Consensus        28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l  105 (198)
T PRK00377         28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEIL  105 (198)
T ss_pred             HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhH
Confidence            3334456677778899999999999999988765 445689999999999999999988765  236899999998653 


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +...++||.|++..   ...++..+++++.++|||||++++..
T Consensus       106 ~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377        106 FTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             hhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence            33346899999854   24567889999999999999998755

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.51  E-value=2.4e-13  Score=125.26  Aligned_cols=122  Identities=14%  Similarity=0.128  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      +.-.+.+.+.++...+++|||+|||+|.++..+++.++..+|+++|.|+.+++.++++++..+.....+++++..|....
T Consensus       214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~  293 (378)
T PRK15001        214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG  293 (378)
T ss_pred             ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence            44456778888776667999999999999999999988889999999999999999998766521124789998887542


Q ss_pred             CCCCCchhhheecchhccC---CC--HHHHHHHHHhhcccCcEEEEEe
Q 021344          232 PFASGFVDAVHAGAALHCW---PS--PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~---~d--~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                       +.+++||+|+++-.+|..   .+  ..++++++.++|||||.+++..
T Consensus       294 -~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        294 -VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             -CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence             234689999997655532   22  2478999999999999999986

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.51  E-value=2.1e-13  Score=124.67  Aligned_cols=118  Identities=18%  Similarity=0.220  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      +.-.+.+.+.+.....++|||+|||+|.++..+++.++..+++++|+|+.+++.++++++..+    ...+++.+|....
T Consensus       182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~----l~~~~~~~D~~~~  257 (342)
T PRK09489        182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG----LEGEVFASNVFSD  257 (342)
T ss_pred             CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCEEEEcccccc
Confidence            334456666666555678999999999999999999877899999999999999999998866    3456777787542


Q ss_pred             CCCCCchhhheecchhccCC-----CHHHHHHHHHhhcccCcEEEEEec
Q 021344          232 PFASGFVDAVHAGAALHCWP-----SPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~-----d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                        .+++||+|+++-.+|+..     ....+++++.+.|||||.+++...
T Consensus       258 --~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        258 --IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             --cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence              257899999998887632     346899999999999999998874

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.50  E-value=1.3e-13  Score=116.80  Aligned_cols=97  Identities=16%  Similarity=0.310  Sum_probs=80.0

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-CCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PFA  234 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l-p~~  234 (314)
                      .+.+.++  ++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.+++          .+++++.+|+.+ + +++
T Consensus         6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~~   72 (194)
T TIGR02081         6 SILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAFP   72 (194)
T ss_pred             HHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhcccccC
Confidence            4445544  46799999999999999887664 3478999999999998875          457888999865 4 466


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhccc
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRS  266 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp  266 (314)
                      +++||+|++.++++|+.|+..+++++.+++++
T Consensus        73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        73 DKSFDYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            78999999999999999999999999887654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.49  E-value=6.5e-13  Score=112.63  Aligned_cols=116  Identities=14%  Similarity=0.135  Sum_probs=90.7

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp  232 (314)
                      ....+.+.+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++..+.   .+++++.+|+.+ ++
T Consensus        28 v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~---~~v~~~~~d~~~~~~  104 (196)
T PRK07402         28 VRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV---KNVEVIEGSAPECLA  104 (196)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCeEEEECchHHHHh
Confidence            33456777777788999999999999999998776667999999999999999999887652   579999999854 22


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .....+|.++...    ..+...+++++.++|||||++++..+.
T Consensus       105 ~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        105 QLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             hCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            2123456665432    235678999999999999999998843

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.48  E-value=4.2e-13  Score=116.50  Aligned_cols=108  Identities=22%  Similarity=0.339  Sum_probs=84.4

Q ss_pred             HHHHHHHhcc---CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          155 FKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       155 ~~~l~~~l~~---~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .+.+.+.+..   .++.+|||||||+|.++..+++.+.  .++|+|+|+.+++.|+++....+  ...++.+..+|+.  
T Consensus        49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~--  122 (230)
T PRK07580         49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLE--  122 (230)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCch--
Confidence            3344444433   4577999999999999999998875  79999999999999999887755  2257899999853  


Q ss_pred             CCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcE
Q 021344          232 PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGV  269 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~  269 (314)
                       ..+++||+|++..+++|++++  ..+++++.+.++++++
T Consensus       123 -~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~  161 (230)
T PRK07580        123 -SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLI  161 (230)
T ss_pred             -hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEE
Confidence             335789999999999998755  4678888887654443

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.48  E-value=6.6e-13  Score=114.03  Aligned_cols=112  Identities=17%  Similarity=0.132  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .....+.+.+...++.+|||+|||+|.++..+++...  +++++|+++.+++.++++++..+.   .+++++.+|.....
T Consensus        65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~  139 (212)
T PRK00312         65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGL---HNVSVRHGDGWKGW  139 (212)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCC---CceEEEECCcccCC
Confidence            3445666777777889999999999999988887764  899999999999999999887653   56999999986532


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ...++||+|++...++++      .+.+.+.|+|||++++...
T Consensus       140 ~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        140 PAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence            234789999998877665      3567889999999998774

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.48  E-value=1.1e-13  Score=107.16  Aligned_cols=106  Identities=23%  Similarity=0.359  Sum_probs=87.5

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhheec
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG  244 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~~~  244 (314)
                      |.+|||+|||+|.++..+++.+ ..+++|+|+++..++.++.++...+  ...+++++++|+.+..  +.+++||+|+++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEEC
Confidence            4689999999999999999998 5699999999999999999998876  3568999999997765  678899999997


Q ss_pred             chhccCC--------CHHHHHHHHHhhcccCcEEEEEec
Q 021344          245 AALHCWP--------SPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       245 ~vl~h~~--------d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      -......        ....+++++.++|||||.+++.++
T Consensus        78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            5544221        125789999999999999998874

...

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.47  E-value=3.6e-13  Score=115.18  Aligned_cols=100  Identities=21%  Similarity=0.209  Sum_probs=79.9

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--------CC
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA  234 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--------~~  234 (314)
                      ..++.+|||+|||+|.++..+++.. +...|+|+|+++.      .        ...++.++++|+...+        +.
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~--------~~~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------D--------PIVGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------c--------CCCCcEEEecCCCChHHHHHHHHHhC
Confidence            4567899999999999999998874 3458999999881      1        1256899999998853        56


Q ss_pred             CCchhhheecchhccCCCH-----------HHHHHHHHhhcccCcEEEEEeccc
Q 021344          235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +++||+|++..+.++..++           ..+|+++.++|||||.+++..+..
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence            7889999998776665443           358999999999999999987543

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.47  E-value=2.3e-13  Score=109.76  Aligned_cols=107  Identities=22%  Similarity=0.381  Sum_probs=90.0

Q ss_pred             CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchh
Q 021344          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL  247 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl  247 (314)
                      .+|||+|||+|.++..|++.+....++|+|+|+.+++.|++..+..+  ....|+|.+.|+.+..+..++||+|+--..+
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQQLDITDPDFLSGQFDLVLDKGTL  146 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--CCcceeEEEeeccCCcccccceeEEeecCce
Confidence            49999999999999999999876679999999999999999988887  3455999999998877778889999876665


Q ss_pred             ccCC---C-----HHHHHHHHHhhcccCcEEEEEecc
Q 021344          248 HCWP---S-----PSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       248 ~h~~---d-----~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .-+.   |     +...+..+.+.|+|||+++|...+
T Consensus       147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN  183 (227)
T KOG1271|consen  147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN  183 (227)
T ss_pred             eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence            5432   1     245788899999999999998843

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.46  E-value=3.6e-13  Score=111.86  Aligned_cols=115  Identities=27%  Similarity=0.366  Sum_probs=91.6

Q ss_pred             HHHHHHHHHhccCC--CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-C
Q 021344          153 EEFKMAQEYFKSAQ--GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-C  229 (314)
Q Consensus       153 ~~~~~l~~~l~~~~--~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~  229 (314)
                      ++.+...+.+....  +..|||||||+|..+..+.+.|.  ..+|+|+|+.|++.|.+.--        .-.++.+|+ +
T Consensus        35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~--------egdlil~DMG~  104 (270)
T KOG1541|consen   35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVEREL--------EGDLILCDMGE  104 (270)
T ss_pred             HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhh--------hcCeeeeecCC
Confidence            44555566665544  77899999999999999999886  99999999999999997321        135677777 5


Q ss_pred             CCCCCCCchhhheecchhccCC-------CHH----HHHHHHHhhcccCcEEEEEeccc
Q 021344          230 RLPFASGFVDAVHAGAALHCWP-------SPS----NAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~-------d~~----~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .+||..++||.|++..+++++-       +|.    .|+..++.+|++|++.++..+-.
T Consensus       105 GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe  163 (270)
T KOG1541|consen  105 GLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE  163 (270)
T ss_pred             CCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence            6899999999999988877653       333    57888999999999999987543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.46  E-value=1.1e-12  Score=118.49  Aligned_cols=113  Identities=20%  Similarity=0.259  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhcc---CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCCCeEEEEec
Q 021344          153 EEFKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRAD  227 (314)
Q Consensus       153 ~~~~~l~~~l~~---~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~d  227 (314)
                      ...+.+.+++..   .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++.+.....  ...++.+..+|
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D  205 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND  205 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence            344555555543   2577999999999999999999865  9999999999999999988754200  12467888888


Q ss_pred             CCCCCCCCCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEE
Q 021344          228 VCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFV  271 (314)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~  271 (314)
                      +..+   +++||+|++..+++|+++..  .+++.+.+ +.+||.++
T Consensus       206 l~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        206 LESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             hhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence            7654   57899999999999998753  45666664 45565544

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.46  E-value=2.3e-13  Score=111.55  Aligned_cols=85  Identities=24%  Similarity=0.259  Sum_probs=73.9

Q ss_pred             EEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344          194 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       194 ~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      +|+|+|+.|++.|+++.+........+++++++|+.++|+++++||+|++.++++|++|+..++++++|+|||||.+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            48999999999998776532210125799999999999999999999999999999999999999999999999999999


Q ss_pred             ecccC
Q 021344          274 TFLRY  278 (314)
Q Consensus       274 ~~~~~  278 (314)
                      ++...
T Consensus        81 d~~~~   85 (160)
T PLN02232         81 DFNKS   85 (160)
T ss_pred             ECCCC
Confidence            98753

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.45  E-value=1.5e-12  Score=116.66  Aligned_cols=120  Identities=16%  Similarity=0.227  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      +..++.+...+. ..+..+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++++..+.  ..++.++.+|+.+
T Consensus        99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~--~~~v~~~~~d~~~  176 (284)
T TIGR00536        99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL--EHRVEFIQSNLFE  176 (284)
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhc
Confidence            344444444332 2223689999999999999999988777999999999999999999887762  3459999999865


Q ss_pred             CCCCCCchhhheec-------------chhccCC------------CHHHHHHHHHhhcccCcEEEEEe
Q 021344          231 LPFASGFVDAVHAG-------------AALHCWP------------SPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 lp~~~~~fD~V~~~-------------~vl~h~~------------d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                       +++.++||+|+++             .++.|-+            ....+++++.+.|+|||++++..
T Consensus       177 -~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~  244 (284)
T TIGR00536       177 -PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI  244 (284)
T ss_pred             -cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence             3444589999985             2333332            23468899999999999998877

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14968 putative methyltransferase; Provisional

Probab=99.45  E-value=2.1e-12  Score=108.40  Aligned_cols=116  Identities=21%  Similarity=0.271  Sum_probs=88.4

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      ..+.+.+...++.+|||+|||+|.++..+++.+  .+++++|+|+.+++.+++++...+. ...++.++.+|+.+ ++.+
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~-~~~~   88 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNI-RNNGVEVIRSDLFE-PFRG   88 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCC-CCcceEEEeccccc-cccc
Confidence            345555555677899999999999999999885  4999999999999999998877652 11128899999865 3445


Q ss_pred             CchhhheecchhccCC---------------------CHHHHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWP---------------------SPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~---------------------d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++||+|+++..+.+..                     ....+++++.++|||||.+++...
T Consensus        89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968         89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS  149 (188)
T ss_pred             cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            5899999865433211                     134689999999999999988764

>PRK04266 fibrillarin; Provisional

Probab=99.45  E-value=1.5e-12  Score=112.48  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=81.4

Q ss_pred             HhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCCC
Q 021344          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASG  236 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p~~~~  236 (314)
                      .+...++.+|||+|||+|.++..+++.....+|+|+|+++.+++.+.++++..     .++.++.+|+...    ++ .+
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l-~~  140 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHV-VE  140 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhc-cc
Confidence            47777899999999999999999998754458999999999999887765532     5789999998642    22 24


Q ss_pred             chhhheecchhccCCCH---HHHHHHHHhhcccCcEEEEEe
Q 021344          237 FVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +||+|++.     +.++   ..+++++.++|||||.+++..
T Consensus       141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v  176 (226)
T PRK04266        141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAI  176 (226)
T ss_pred             cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            69999853     3344   346899999999999999953

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.44  E-value=2.7e-12  Score=105.18  Aligned_cols=118  Identities=19%  Similarity=0.240  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .+........|.+.++.+++|||||+|..+..++..++..+++++|-++.+++..+++.+..+   .+|+.++.+++.+.
T Consensus        20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~   96 (187)
T COG2242          20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEA   96 (187)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHh
Confidence            344556677888999999999999999999999988899999999999999999999999987   48999999999653


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      --...+||.|+....    .+...+|+.+...|||||++++....
T Consensus        97 L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          97 LPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             hcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            211227999999887    35678899999999999999987743

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.43  E-value=2e-12  Score=118.36  Aligned_cols=119  Identities=20%  Similarity=0.267  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .....+.......++.+|||+|||+|.++..++..+.  +++|+|+++.+++.++++++..+.   .++.++.+|+.++|
T Consensus       169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~l~  243 (329)
T TIGR01177       169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATKLP  243 (329)
T ss_pred             HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhcCC
Confidence            3445555666667788999999999999988887765  999999999999999999988763   44889999999999


Q ss_pred             CCCCchhhheecchh------c-c-CCC-HHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 FASGFVDAVHAGAAL------H-C-WPS-PSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl------~-h-~~d-~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +.+++||+|++.--.      . + ..+ ...+++++.++|||||++++..+.
T Consensus       244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~  296 (329)
T TIGR01177       244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT  296 (329)
T ss_pred             cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence            888899999985211      1 1 101 368899999999999999988854

This family is found exclusively in the Archaea.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.43  E-value=1.7e-12  Score=116.59  Aligned_cols=103  Identities=20%  Similarity=0.306  Sum_probs=83.0

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.+++++...+  ...++.+...+...  ..+++||+|+++.
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~--~~~~~~~~~~~~~~--~~~~~fDlVvan~  233 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQ--VSDRLQVKLIYLEQ--PIEGKADVIVANI  233 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeccccc--ccCCCceEEEEec
Confidence            57899999999999999888876 3589999999999999999988766  23456666666332  3357899999976


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ..++   ...++.++.++|||||+++++...
T Consensus       234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       234 LAEV---IKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             CHHH---HHHHHHHHHHHcCCCcEEEEEeCc
Confidence            5443   357899999999999999998854

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.42  E-value=6.1e-13  Score=112.23  Aligned_cols=104  Identities=24%  Similarity=0.264  Sum_probs=79.5

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhc
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH  248 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (314)
                      .++|+|||+|..++.++..+.  +|+|+|+|+.|++.|++......  ......+...+..++--.+++.|+|++...+|
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H  111 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDLLGGEESVDLITAAQAVH  111 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCccc--ccCCccccccccccccCCCcceeeehhhhhHH
Confidence            899999999988888888876  99999999999999988433321  11223333333333333488999999999999


Q ss_pred             cCCCHHHHHHHHHhhcccC-cEEEEEeccc
Q 021344          249 CWPSPSNAVAEISRILRSG-GVFVGTTFLR  277 (314)
Q Consensus       249 h~~d~~~~l~~i~r~LkpG-G~l~i~~~~~  277 (314)
                      ++ |...+++++.|+||+. |.+.+..+..
T Consensus       112 WF-dle~fy~~~~rvLRk~Gg~iavW~Y~d  140 (261)
T KOG3010|consen  112 WF-DLERFYKEAYRVLRKDGGLIAVWNYND  140 (261)
T ss_pred             hh-chHHHHHHHHHHcCCCCCEEEEEEccC
Confidence            87 6778899999999875 5888888774

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.42  E-value=4.4e-12  Score=108.73  Aligned_cols=113  Identities=13%  Similarity=0.167  Sum_probs=90.6

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc---------CCCCCCCeEEEEecCCCCCC
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------NTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ...++.+||+.|||.|..+..|++.|.  +|+|+|+|+.+++.+.+.....         ......+++++++|+.+++.
T Consensus        40 ~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~  117 (226)
T PRK13256         40 NINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK  117 (226)
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence            334568999999999999999999998  8999999999999886622100         00023589999999999863


Q ss_pred             C---CCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 A---SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 ~---~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .   .++||+|+-...|.+++..  .+..+.+.++|+|||.+++.++..
T Consensus       118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~  166 (226)
T PRK13256        118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH  166 (226)
T ss_pred             cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence            2   2579999999999999654  478999999999999998887753

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.42  E-value=3.5e-12  Score=114.18  Aligned_cols=107  Identities=21%  Similarity=0.239  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++..+  ...++.++.+|+.+ ++++++||+|+++
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~-~~~~~~fD~Iv~N  196 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFA-ALPGRKYDLIVSN  196 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhh-ccCCCCccEEEEC
Confidence            34578999999999999999998777799999999999999999998876  23579999999854 2345689999985


Q ss_pred             c------hhccC-----CCH--------------HHHHHHHHhhcccCcEEEEEe
Q 021344          245 A------ALHCW-----PSP--------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       245 ~------vl~h~-----~d~--------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      -      .+.++     .+|              ..+++++.++|+|||++++..
T Consensus       197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~  251 (284)
T TIGR03533       197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV  251 (284)
T ss_pred             CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            1      11111     112              467888999999999999877

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR03438 probable methyltransferase

Probab=99.42  E-value=3.1e-12  Score=115.55  Aligned_cols=110  Identities=18%  Similarity=0.208  Sum_probs=84.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCCCCC----chh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG----FVD  239 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~~~~----~fD  239 (314)
                      ++.+|||+|||+|..+..+++... ..+++++|+|+.|++.+++++....  ...++.++++|+.+ +++...    ...
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~~~~~~~~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPLALPPEPAAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchhhhhcccccCCeE
Confidence            467899999999999999998854 3589999999999999999877543  23567889999876 343332    233


Q ss_pred             hheecchhccCCC--HHHHHHHHHhhcccCcEEEEEeccc
Q 021344          240 AVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       240 ~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++++...++|++.  ...+|++++++|+|||.+++.....
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~  180 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV  180 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence            4555567888764  3478999999999999999866544

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.41  E-value=3.5e-12  Score=112.14  Aligned_cols=117  Identities=22%  Similarity=0.292  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ...+.+.+.+.. .+.+|||+|||+|.++..+++..+..+++|+|+++.+++.+++++...+.   .++.++.+|+.+ +
T Consensus        75 ~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~-~  149 (251)
T TIGR03534        75 ELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDWFE-P  149 (251)
T ss_pred             HHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhc-c
Confidence            344455555443 45689999999999999999987777999999999999999999887653   479999999866 4


Q ss_pred             CCCCchhhheecch------hccCC--------------------CHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 FASGFVDAVHAGAA------LHCWP--------------------SPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ~~~~~fD~V~~~~v------l~h~~--------------------d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +++++||+|+++-.      ++++.                    ....+++++.++|+|||.+++..
T Consensus       150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       150 LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            55788999998422      11111                    11367899999999999999865

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14967 putative methyltransferase; Provisional

Probab=99.41  E-value=3.5e-12  Score=110.37  Aligned_cols=107  Identities=20%  Similarity=0.203  Sum_probs=83.7

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ...++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++...+    .++.++.+|+... +++++||+|+
T Consensus        33 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~Vi  106 (223)
T PRK14967         33 GLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVVV  106 (223)
T ss_pred             ccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEEE
Confidence            34567899999999999999998875 3489999999999999999887765    4688899998653 4567899999


Q ss_pred             ecchhccCC---------------------CHHHHHHHHHhhcccCcEEEEEec
Q 021344          243 AGAALHCWP---------------------SPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       243 ~~~vl~h~~---------------------d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++-....-.                     ....+++++.++|||||++++...
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~  160 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS  160 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            863322111                     034578899999999999998653

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=3.9e-12  Score=106.49  Aligned_cols=111  Identities=17%  Similarity=0.146  Sum_probs=94.0

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ....+.+.+..+++.+|||||||+|+.+.-+++...  +|+.+|..+...+.|+++++..+   ..|+.++++|...---
T Consensus        60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~~  134 (209)
T COG2518          60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGWP  134 (209)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCCC
Confidence            456788899999999999999999999999999876  99999999999999999999987   3679999999876332


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +...||.|+.......+|+.      +.+-||+||++++-.-
T Consensus       135 ~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         135 EEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence            45789999998887776443      4456899999998663

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.39  E-value=4.3e-12  Score=120.09  Aligned_cols=129  Identities=18%  Similarity=0.216  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .....+...+...++.+|||+|||+|..+..+++..+..+++++|+++.+++.++++++..+.  ...+.+..+|....+
T Consensus       225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~~  302 (426)
T TIGR00563       225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGPS  302 (426)
T ss_pred             HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecccccccc
Confidence            344566667788889999999999999999998875456999999999999999999998763  223444677766544


Q ss_pred             C--CCCchhhhee------cchhccCCC----------------HHHHHHHHHhhcccCcEEEEEecccCCCCCc
Q 021344          233 F--ASGFVDAVHA------GAALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTS  283 (314)
Q Consensus       233 ~--~~~~fD~V~~------~~vl~h~~d----------------~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~  283 (314)
                      .  ..++||.|++      .+++.+.++                ...+|+++.++|||||+++.++.+-.+..+.
T Consensus       303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene  377 (426)
T TIGR00563       303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENS  377 (426)
T ss_pred             ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCH
Confidence            3  4578999985      355666555                2478999999999999999998776544443

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.38  E-value=4.1e-12  Score=120.43  Aligned_cols=125  Identities=18%  Similarity=0.270  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      +.....+...+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++..+.   .++.++.+|+..
T Consensus       238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~  314 (434)
T PRK14901        238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRN  314 (434)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhh
Confidence            3444556666777788999999999999999988863 345899999999999999999988763   579999999987


Q ss_pred             CC----CCCCchhhheec------chhccCCC----------------HHHHHHHHHhhcccCcEEEEEecccCC
Q 021344          231 LP----FASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       231 lp----~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      ++    +..++||.|++.      +++.+-++                ...+|.++.++|||||+++.+|.+-.+
T Consensus       315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~  389 (434)
T PRK14901        315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP  389 (434)
T ss_pred             cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            65    445789999963      45555444                246799999999999999998866543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.37  E-value=4.2e-12  Score=114.94  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=89.2

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ....+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.+++.|+++++..+.   .++.++.+|+...+
T Consensus        68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~---~nV~~i~gD~~~~~  144 (322)
T PRK13943         68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI---ENVIFVCGDGYYGV  144 (322)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCChhhcc
Confidence            334556666677788999999999999999988753 24799999999999999999887763   67999999987655


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ...++||+|++...++++      ...+.+.|+|||++++..
T Consensus       145 ~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        145 PEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence            445689999998766654      234678899999988854

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.37  E-value=8.7e-12  Score=112.66  Aligned_cols=104  Identities=21%  Similarity=0.242  Sum_probs=83.5

Q ss_pred             CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc--
Q 021344          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA--  245 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~--  245 (314)
                      .+|||+|||+|.++..++...+..+++++|+|+.+++.|+++++..+  ...+++++.+|+.+ ++++++||+|+++-  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPy  211 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFA-ALPGRRYDLIVSNPPY  211 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhh-hCCCCCccEEEECCCC
Confidence            68999999999999999998877899999999999999999998776  23579999999854 23356899999851  


Q ss_pred             ----h-------hccCCC------------HHHHHHHHHhhcccCcEEEEEe
Q 021344          246 ----A-------LHCWPS------------PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       246 ----v-------l~h~~d------------~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                          .       ++|-+.            ...+++++.+.|+|||++++..
T Consensus       212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~  263 (307)
T PRK11805        212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV  263 (307)
T ss_pred             CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                1       112211            1467899999999999999876

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.37  E-value=2e-12  Score=110.13  Aligned_cols=112  Identities=18%  Similarity=0.202  Sum_probs=86.6

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ....+.+.+...++.+|||||||+|+++..++.. ++...|+++|.++..++.|++++...+.   .++.++.+|....-
T Consensus        60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~---~nv~~~~gdg~~g~  136 (209)
T PF01135_consen   60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI---DNVEVVVGDGSEGW  136 (209)
T ss_dssp             HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT---HSEEEEES-GGGTT
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc---CceeEEEcchhhcc
Confidence            4557778888999999999999999999998887 4445799999999999999999998763   69999999986533


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ...+.||.|++......+  |    ..+.+.||+||++++-.
T Consensus       137 ~~~apfD~I~v~~a~~~i--p----~~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  137 PEEAPFDRIIVTAAVPEI--P----EALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred             ccCCCcCEEEEeeccchH--H----HHHHHhcCCCcEEEEEE
Confidence            345689999998887654  2    33566799999999865

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.37  E-value=4.6e-12  Score=94.50  Aligned_cols=101  Identities=27%  Similarity=0.404  Sum_probs=85.0

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-CCCchhhheecchh
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGAAL  247 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-~~~~fD~V~~~~vl  247 (314)
                      +++|+|||.|.++..+.+ ....+++++|+++..+..+++.....   ...++.++..|+.+... ..++||+|++..++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~   76 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL   76 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence            589999999999999988 34569999999999999988543332   24679999999887653 45789999999999


Q ss_pred             cc-CCCHHHHHHHHHhhcccCcEEEEE
Q 021344          248 HC-WPSPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       248 ~h-~~d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      ++ ..+...+++.+.+.|+|||.+++.
T Consensus        77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          77 HHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            99 778889999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.37  E-value=5.3e-12  Score=111.09  Aligned_cols=98  Identities=22%  Similarity=0.359  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.|+++++..+.  ...+.+..+        +.+||+|+++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~--------~~~fD~Vvan  186 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG--------DLKADVIVAN  186 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC--------CCCcCEEEEc
Confidence            3578999999999999998888775 3699999999999999999887652  123333222        2279999986


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ...+.   ...+++++.++|||||++++....
T Consensus       187 i~~~~---~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        187 ILANP---LLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             CcHHH---HHHHHHHHHHhcCCCcEEEEEECc
Confidence            54322   357789999999999999998754

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.35  E-value=1.2e-11  Score=116.93  Aligned_cols=122  Identities=16%  Similarity=0.244  Sum_probs=94.7

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-  232 (314)
                      ....+...+...++.+|||+|||+|..+..+++.....+|+++|+++.+++.++++++..+    .++.++.+|+.+++ 
T Consensus       232 ~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~~~  307 (427)
T PRK10901        232 AAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDPAQ  307 (427)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccchh
Confidence            3345556677778999999999999999999988755699999999999999999998876    34789999997754 


Q ss_pred             -CCCCchhhheecc------hhccCC------CH----------HHHHHHHHhhcccCcEEEEEecccCC
Q 021344          233 -FASGFVDAVHAGA------ALHCWP------SP----------SNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       233 -~~~~~fD~V~~~~------vl~h~~------d~----------~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                       +..++||.|++.-      ++.+-+      .+          ..+|+.+.++|||||++++++.+-.+
T Consensus       308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  377 (427)
T PRK10901        308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP  377 (427)
T ss_pred             hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence             3356899999422      222211      11          26899999999999999998865543

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.8e-11  Score=104.78  Aligned_cols=116  Identities=21%  Similarity=0.271  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ..+.++...+...++.+|||.|.|+|.++..|+.. ++..+|+.+|+.++..+.|+++++..++  ..++++..+|+.+.
T Consensus        81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~  158 (256)
T COG2519          81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREG  158 (256)
T ss_pred             CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEecccccc
Confidence            44567888899999999999999999999999964 6667999999999999999999999873  45699999999876


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      -+.+ .||+|+..     +++|..++..+.++|||||.+++..+.
T Consensus       159 ~~~~-~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         159 IDEE-DVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             cccc-ccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence            6554 79999875     689999999999999999999988854

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.33  E-value=2.2e-11  Score=106.66  Aligned_cols=113  Identities=20%  Similarity=0.306  Sum_probs=93.2

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+....+.....+|||||+|.|.++..+++..|+.+++.+|. |..++.+++         ..+++++.+|+. .+++. 
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~-  158 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV-  158 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS-
T ss_pred             hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc-
Confidence            444555666677999999999999999999999999999998 888888887         279999999998 56665 


Q ss_pred             chhhheecchhccCCCHH--HHHHHHHhhcccC--cEEEEEecccCCCCC
Q 021344          237 FVDAVHAGAALHCWPSPS--NAVAEISRILRSG--GVFVGTTFLRYTSST  282 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpG--G~l~i~~~~~~~~~~  282 (314)
                       +|+|++.++||+++|.+  .+|+++++.|+||  |+|+|.+....+...
T Consensus       159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~  207 (241)
T PF00891_consen  159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRT  207 (241)
T ss_dssp             -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSS
T ss_pred             -ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCC
Confidence             99999999999998775  7899999999999  999999887654433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00811 spermidine synthase; Provisional

Probab=99.33  E-value=2e-11  Score=109.25  Aligned_cols=109  Identities=15%  Similarity=0.225  Sum_probs=83.7

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCCCeEEEEecCCCC-CCCCCchhhhe
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRL-PFASGFVDAVH  242 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~d~~~l-p~~~~~fD~V~  242 (314)
                      ++.+||+||||+|..++.+.+.....+|+++|+++.+++.|++.+......  ...+++++.+|+... ...+++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            467999999999999999998744568999999999999999987642210  246899999998652 33467899999


Q ss_pred             ecchhccCCC----HHHHHHHHHhhcccCcEEEEEe
Q 021344          243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       243 ~~~vl~h~~d----~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +...-.+.+.    ...+++.+.+.|+|||++++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            8643222111    2578899999999999998765

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.33  E-value=3.3e-11  Score=107.51  Aligned_cols=119  Identities=21%  Similarity=0.271  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      +...+.+.......++.+|||+|||+|.++..++...+..+++|+|+++.+++.+++++.. .  ...++.++.+|+.. 
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~--~~~~i~~~~~d~~~-  169 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-G--LGARVEFLQGDWFE-  169 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-C--CCCcEEEEEccccC-
Confidence            3444555544555567899999999999999999988777999999999999999998872 1  23689999999854 


Q ss_pred             CCCCCchhhheecch------hc--------cC------------CCHHHHHHHHHhhcccCcEEEEEe
Q 021344          232 PFASGFVDAVHAGAA------LH--------CW------------PSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 p~~~~~fD~V~~~~v------l~--------h~------------~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++.+++||+|+++-.      ++        |-            .....+++++.++|||||++++..
T Consensus       170 ~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        170 PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            233578999998421      11        11            112467888889999999999865

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.32  E-value=1.2e-11  Score=104.40  Aligned_cols=99  Identities=22%  Similarity=0.449  Sum_probs=82.2

Q ss_pred             CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CC--CCCCchhhheec
Q 021344          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP--FASGFVDAVHAG  244 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp--~~~~~fD~V~~~  244 (314)
                      ..+||||||.|.++..++...|+..++|+|+....+..+.+++...++   .|+.++++|+.. +.  ++++++|.|+..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l---~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL---KNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT---SSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc---cceEEEEccHHHHHhhcccCCchheEEEe
Confidence            389999999999999999999999999999999999999999988864   899999999977 22  456788888875


Q ss_pred             chhccCCCH-------------HHHHHHHHhhcccCcEEEEEe
Q 021344          245 AALHCWPSP-------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       245 ~vl~h~~d~-------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +     |||             ..+++.+.++|+|||.+.+.|
T Consensus        96 F-----PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen   96 F-----PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             S----------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C-----CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence            4     666             368999999999999999988

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=1.7e-11  Score=115.92  Aligned_cols=125  Identities=16%  Similarity=0.211  Sum_probs=96.9

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-  232 (314)
                      ...+...+...++.+|||+|||+|..+.+++... ...+|+++|+++.+++.++++++..+.   .++.++.+|...++ 
T Consensus       226 s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~  302 (431)
T PRK14903        226 SQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTE  302 (431)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhh
Confidence            3455556777788999999999999998888763 345999999999999999999988763   56899999998765 


Q ss_pred             CCCCchhhheec------chhccCCC----------------HHHHHHHHHhhcccCcEEEEEecccCCCCC
Q 021344          233 FASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSST  282 (314)
Q Consensus       233 ~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~  282 (314)
                      +.+++||.|++.      +++.+-++                ..++|.++.+.|||||+++.+|.+..+..+
T Consensus       303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEn  374 (431)
T PRK14903        303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEEN  374 (431)
T ss_pred             hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhC
Confidence            446789999862      22332221                135799999999999999999987654443

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.31  E-value=1.1e-11  Score=106.76  Aligned_cols=116  Identities=12%  Similarity=0.241  Sum_probs=94.9

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FA  234 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~  234 (314)
                      ++..+......++|||+|||+|..+..++++....+++|||+.+.+.+.|+++++..+  ...+++++++|+.+..  ..
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~--l~~ri~v~~~Di~~~~~~~~  112 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP--LEERIQVIEADIKEFLKALV  112 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc--chhceeEehhhHHHhhhccc
Confidence            4556666666889999999999999999999767899999999999999999999987  5689999999997753  33


Q ss_pred             CCchhhheecchhccC------------------CCHHHHHHHHHhhcccCcEEEEEe
Q 021344          235 SGFVDAVHAGAALHCW------------------PSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~------------------~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ..+||+|+|+=-..-.                  .+.+.+++...++|||||.+.+..
T Consensus       113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~  170 (248)
T COG4123         113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH  170 (248)
T ss_pred             ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence            4479999995221110                  134578999999999999999887

>PRK04457 spermidine synthase; Provisional

Probab=99.31  E-value=1.3e-11  Score=109.08  Aligned_cols=110  Identities=11%  Similarity=0.163  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-CCCCCchhhhee
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA  243 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p~~~~~fD~V~~  243 (314)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|++.+...+  ...+++++.+|+.+. ....++||+|++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l~~~~~~yD~I~~  142 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYIAVHRHSTDVILV  142 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence            35678999999999999999998888899999999999999999876532  236899999998542 222457999997


Q ss_pred             cchhc--cCC---CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          244 GAALH--CWP---SPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       244 ~~vl~--h~~---d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .. ++  ..+   ....+++++.++|+|||++++..+..
T Consensus       143 D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        143 DG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR  180 (262)
T ss_pred             eC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence            53 22  111   12689999999999999999976544

>PTZ00146 fibrillarin; Provisional

Probab=99.31  E-value=5e-11  Score=105.38  Aligned_cols=106  Identities=18%  Similarity=0.182  Sum_probs=79.0

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCCCc
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGF  237 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l---p~~~~~  237 (314)
                      +...++.+|||+|||+|.++..+++.. +...|+++|+++.+.+...+..+.     ..|+.++.+|+...   ....++
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~  202 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPM  202 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCC
Confidence            456778899999999999999999883 345899999998765544443332     15789999998641   223457


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ||+|++...  ...+...++.++.++|||||.|++..
T Consensus       203 vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~i  237 (293)
T PTZ00146        203 VDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISI  237 (293)
T ss_pred             CCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEE
Confidence            999998764  22334466779999999999999943

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.31  E-value=1.4e-12  Score=109.00  Aligned_cols=120  Identities=21%  Similarity=0.241  Sum_probs=92.3

Q ss_pred             CCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 021344          147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (314)
Q Consensus       147 ~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~  226 (314)
                      ++..+....+++. ..+..+-.++||+|||||.....+...-.  +++|+|+|++|++.|.++-        .--.+.++
T Consensus       107 ~Y~vP~~l~emI~-~~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg--------~YD~L~~A  175 (287)
T COG4976         107 GYSVPELLAEMIG-KADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKG--------LYDTLYVA  175 (287)
T ss_pred             cCccHHHHHHHHH-hccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhcc--------chHHHHHH
Confidence            3444555554444 34444467899999999999999998866  8999999999999998842        22234455


Q ss_pred             cCCC-CC-CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          227 DVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       227 d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++.. ++ ..++.||+|++..|+-++.+...++..+...|+|||.+.++.-..
T Consensus       176 ea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l  228 (287)
T COG4976         176 EAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL  228 (287)
T ss_pred             HHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence            5432 22 346789999999999999999999999999999999999977544

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.9e-11  Score=108.18  Aligned_cols=119  Identities=22%  Similarity=0.351  Sum_probs=87.8

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      +...-..+.+.++..  ++.+|||+|||+|-++...++.|. .+++|+|+++.+++.+++++..++.  ...+.....+.
T Consensus       147 pTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v--~~~~~~~~~~~  221 (300)
T COG2264         147 PTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGV--ELLVQAKGFLL  221 (300)
T ss_pred             hhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCC--chhhhcccccc
Confidence            333444566666655  588999999999999999999985 4799999999999999999998773  21122333333


Q ss_pred             CCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ...+ ..++||+|+++= |-++  ...+..++.+.|||||+++++...
T Consensus       222 ~~~~-~~~~~DvIVANI-LA~v--l~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         222 LEVP-ENGPFDVIVANI-LAEV--LVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             hhhc-ccCcccEEEehh-hHHH--HHHHHHHHHHHcCCCceEEEEeeh
Confidence            3322 235899999864 2221  247889999999999999999854

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.30  E-value=2.3e-11  Score=107.91  Aligned_cols=119  Identities=18%  Similarity=0.130  Sum_probs=92.1

Q ss_pred             HHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc
Q 021344          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~  237 (314)
                      ...+...++.+|||+|||+|..+..++.... ...|+++|+++.+++.++++++..+.   .++.++..|...++...+.
T Consensus        64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~~  140 (264)
T TIGR00446        64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFGAAVPK  140 (264)
T ss_pred             HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhhhhccC
Confidence            3456667889999999999999998887632 34899999999999999999988763   5799999998776554567


Q ss_pred             hhhheec------chhccCCC---------------H-HHHHHHHHhhcccCcEEEEEecccCCC
Q 021344          238 VDAVHAG------AALHCWPS---------------P-SNAVAEISRILRSGGVFVGTTFLRYTS  280 (314)
Q Consensus       238 fD~V~~~------~vl~h~~d---------------~-~~~l~~i~r~LkpGG~l~i~~~~~~~~  280 (314)
                      ||+|++.      .++.+-++               . ..+|+++.+.|||||+++.++.+-.+.
T Consensus       141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~  205 (264)
T TIGR00446       141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE  205 (264)
T ss_pred             CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence            9999863      22322221               1 258999999999999999988665443

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.30  E-value=3.8e-11  Score=111.03  Aligned_cols=115  Identities=14%  Similarity=0.127  Sum_probs=85.4

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+.  ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++..+    .++.++++|+.+..+
T Consensus       241 LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e~~l  314 (423)
T PRK14966        241 LVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFDTDM  314 (423)
T ss_pred             HHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhcccc
Confidence            3444444333  4569999999999999999987767799999999999999999988765    589999999865432


Q ss_pred             -CCCchhhheecchh-------------cc--------CCC----HHHHHHHHHhhcccCcEEEEEe
Q 021344          234 -ASGFVDAVHAGAAL-------------HC--------WPS----PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 -~~~~fD~V~~~~vl-------------~h--------~~d----~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                       ..++||+|+++--.             .|        -.|    ...+++++.+.|+|||.+++..
T Consensus       315 ~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi  381 (423)
T PRK14966        315 PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH  381 (423)
T ss_pred             ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence             24579999994211             00        001    1256777778999999988766

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.30  E-value=6.4e-12  Score=106.07  Aligned_cols=106  Identities=22%  Similarity=0.285  Sum_probs=88.9

Q ss_pred             eEEEEcCcccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----CCCCCCchhhhe
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDAVH  242 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----lp~~~~~fD~V~  242 (314)
                      +||+||||.|.....+.+..++  ..++++|.|+++++..+++.....    .++.....|+..    .|...+++|+|+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e----~~~~afv~Dlt~~~~~~~~~~~svD~it  149 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE----SRVEAFVWDLTSPSLKEPPEEGSVDIIT  149 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch----hhhcccceeccchhccCCCCcCccceEE
Confidence            8999999999999999988776  789999999999999998765532    566666667643    346678999999


Q ss_pred             ecchhccCCC--HHHHHHHHHhhcccCcEEEEEecccC
Q 021344          243 AGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       243 ~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +.+||.-++.  .+.+++++.++|||||.+++.++.+.
T Consensus       150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~  187 (264)
T KOG2361|consen  150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY  187 (264)
T ss_pred             EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence            9999988753  35899999999999999999998764

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=5.2e-11  Score=104.83  Aligned_cols=120  Identities=17%  Similarity=0.298  Sum_probs=98.6

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .+.-.+.+.+.++...+++|||+|||.|.++..+++..|..+++-+|++..+++.+++++..++.   .+..++..|...
T Consensus       143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~~v~~s~~~~  219 (300)
T COG2813         143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV---ENTEVWASNLYE  219 (300)
T ss_pred             cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC---CccEEEEecccc
Confidence            34556788888888878899999999999999999999999999999999999999999998763   343666667654


Q ss_pred             CCCCCCchhhheecchhccCCCH-----HHHHHHHHhhcccCcEEEEEec
Q 021344          231 LPFASGFVDAVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~-----~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       +..+ +||.|+++=-||-=.+.     .+++.+..+.|++||.|.+...
T Consensus       220 -~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         220 -PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             -cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence             3334 89999998666642222     3789999999999999999885

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.29  E-value=3.3e-11  Score=101.52  Aligned_cols=105  Identities=21%  Similarity=0.259  Sum_probs=77.6

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---  232 (314)
                      ...++....++.+|||+|||+|.++..+++.. ...+++++|+++.+     .         ..++.++++|+.+.+   
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---------~~~i~~~~~d~~~~~~~~   88 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---------IENVDFIRGDFTDEEVLN   88 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---------CCCceEEEeeCCChhHHH
Confidence            33344445678899999999999999888775 34579999999854     1         146888999987643   


Q ss_pred             -----CCCCchhhheecchh--------ccCC---CHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 -----FASGFVDAVHAGAAL--------HCWP---SPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 -----~~~~~fD~V~~~~vl--------~h~~---d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                           ++.++||+|++....        +|..   +...+++++.++|+|||++++..+
T Consensus        89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438        89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence                 346689999985432        2211   135789999999999999999763

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.28  E-value=3.6e-11  Score=114.45  Aligned_cols=121  Identities=20%  Similarity=0.233  Sum_probs=93.4

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ....+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++++..+.   .++.++.+|+..++
T Consensus       238 ~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~  314 (444)
T PRK14902        238 SSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVH  314 (444)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCccccc
Confidence            33455566777778899999999999999998863 456999999999999999999988763   46999999997753


Q ss_pred             --CCCCchhhheecc------hhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccC
Q 021344          233 --FASGFVDAVHAGA------ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       233 --~~~~~fD~V~~~~------vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                        +. ++||+|++..      ++.+-++.                ..+|+++.++|||||.++.++.+-.
T Consensus       315 ~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~  383 (444)
T PRK14902        315 EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE  383 (444)
T ss_pred             chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence              33 6899999742      22222211                2579999999999999998775543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.28  E-value=6.3e-11  Score=103.00  Aligned_cols=118  Identities=21%  Similarity=0.361  Sum_probs=94.8

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ...+.++...++..+|.+|||.|.|+|.++..+++. ++..+|+.+|+.++.++.|+++++..+  ...++++.+.|+.+
T Consensus        26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv~~  103 (247)
T PF08704_consen   26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDVCE  103 (247)
T ss_dssp             HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-GGC
T ss_pred             CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecceec
Confidence            445668888899999999999999999999999975 677799999999999999999999988  46789999999965


Q ss_pred             CCCC---CCchhhheecchhccCCCHHHHHHHHHhhc-ccCcEEEEEecc
Q 021344          231 LPFA---SGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFL  276 (314)
Q Consensus       231 lp~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L-kpGG~l~i~~~~  276 (314)
                      ..|.   +..+|.|+..     +++|..++..+.++| |+||++.+..++
T Consensus       104 ~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~  148 (247)
T PF08704_consen  104 EGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPC  148 (247)
T ss_dssp             G--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred             ccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCC
Confidence            4442   2568888865     689999999999999 899999988844

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.27  E-value=2.5e-11  Score=115.45  Aligned_cols=122  Identities=16%  Similarity=0.162  Sum_probs=93.7

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      .....+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++..+.   .+++++.+|+..++ ++
T Consensus       241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~-~~  316 (445)
T PRK14904        241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS-PE  316 (445)
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc-cC
Confidence            44456666778899999999999988887753 234899999999999999999988763   57999999998765 45


Q ss_pred             Cchhhheec------chhccCC------C----------HHHHHHHHHhhcccCcEEEEEecccCCCCC
Q 021344          236 GFVDAVHAG------AALHCWP------S----------PSNAVAEISRILRSGGVFVGTTFLRYTSST  282 (314)
Q Consensus       236 ~~fD~V~~~------~vl~h~~------d----------~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~  282 (314)
                      ++||+|++.      .++.+-+      +          ...+|.++.+.|||||+++..|.+-.+..+
T Consensus       317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~En  385 (445)
T PRK14904        317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEEN  385 (445)
T ss_pred             CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhH
Confidence            689999962      2222111      1          135899999999999999999977654443

>PHA03411 putative methyltransferase; Provisional

Probab=99.27  E-value=9.1e-11  Score=102.68  Aligned_cols=117  Identities=13%  Similarity=0.127  Sum_probs=88.5

Q ss_pred             CCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 021344          147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (314)
Q Consensus       147 ~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~  226 (314)
                      .|.++......+.  +.....++|||+|||+|.++..++++....+++|+|+++.+++.+++++        .++.++++
T Consensus        47 ~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~  116 (279)
T PHA03411         47 AFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWITS  116 (279)
T ss_pred             eEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEEC
Confidence            3556666654332  2233467999999999999988887654469999999999999998853        46889999


Q ss_pred             cCCCCCCCCCchhhheecchhccCCC--------------------HHHHHHHHHhhcccCcEEEEEe
Q 021344          227 DVCRLPFASGFVDAVHAGAALHCWPS--------------------PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       227 d~~~lp~~~~~fD~V~~~~vl~h~~d--------------------~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+..... +++||+|+++-.+.|...                    ...+++....+|+|+|.+.+..
T Consensus       117 D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y  183 (279)
T PHA03411        117 DVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY  183 (279)
T ss_pred             chhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence            9987653 468999999877777532                    1356788889999999877763

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.26  E-value=6e-11  Score=101.84  Aligned_cols=138  Identities=18%  Similarity=0.278  Sum_probs=93.0

Q ss_pred             HhHHHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh--cC
Q 021344          137 RGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DN  214 (314)
Q Consensus       137 ~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--~~  214 (314)
                      ..|++.-.......+........+.+...++.+||+.|||.|..+..|++.|.  +|+|+|+|+.+++.+.+....  ..
T Consensus         8 ~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~   85 (218)
T PF05724_consen    8 ERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTV   85 (218)
T ss_dssp             HHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEEC
T ss_pred             HHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCc
Confidence            34444433333333333333333335566778999999999999999999987  999999999999998443221  00


Q ss_pred             -------CCCCCCeEEEEecCCCCCCCC-CchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEecc
Q 021344          215 -------TILTSNLALVRADVCRLPFAS-GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       215 -------~~~~~~v~~~~~d~~~lp~~~-~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                             .....+|+++++|+..++... ++||+|+-...|.-++.  -.+..+.+.++|||||.+++.+..
T Consensus        86 ~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~  157 (218)
T PF05724_consen   86 TSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE  157 (218)
T ss_dssp             TTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred             ccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence                   001347899999999876433 47999998888877753  358999999999999995444443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.26  E-value=6.5e-11  Score=113.93  Aligned_cols=105  Identities=12%  Similarity=0.137  Sum_probs=82.0

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc-
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA-  245 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~-  245 (314)
                      +.+|||+|||+|.++..++...+..+++++|+|+.+++.|+++++..+  ...++.++.+|+.. ++..++||+|+++- 
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~-~~~~~~fDlIvsNPP  215 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFE-NIEKQKFDFIVSNPP  215 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--Cccceeeeecchhh-hCcCCCccEEEECCC
Confidence            468999999999999999887767799999999999999999988765  23579999999754 23356899999841 


Q ss_pred             -------------hhccCCC------------HHHHHHHHHhhcccCcEEEEEe
Q 021344          246 -------------ALHCWPS------------PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       246 -------------vl~h~~d------------~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                                   ++.|-+.            ...+++++.++|+|||.+++..
T Consensus       216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi  269 (506)
T PRK01544        216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI  269 (506)
T ss_pred             CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence                         2222111            1346778889999999998864

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.25  E-value=5e-11  Score=108.33  Aligned_cols=111  Identities=26%  Similarity=0.322  Sum_probs=79.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-------CCCCCCeEEEEecCCCCC----CC
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-------TILTSNLALVRADVCRLP----FA  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~~~~~~v~~~~~d~~~lp----~~  234 (314)
                      ++.+|||+|||-|.-+......+ -..++|+|++...++.|+++.+...       ........++.+|.....    +.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            67899999999988776666664 3489999999999999999983211       001245678888876421    22


Q ss_pred             --CCchhhheecchhccCCCH----HHHHHHHHhhcccCcEEEEEeccc
Q 021344          235 --SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 --~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                        ..+||+|.|.+.|||.-..    ..+|+++.+.|||||+++.+++..
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~  189 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS  189 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence              3589999999999986433    368999999999999999999654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.24  E-value=1.9e-11  Score=109.00  Aligned_cols=111  Identities=23%  Similarity=0.373  Sum_probs=82.1

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+.+.++.  .++.+|||+|||+|-++...++.|. .+|+|+|+++.+++.|+++++.++.  ..++.+.  ...+.  .
T Consensus       152 l~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~--~~~~~v~--~~~~~--~  222 (295)
T PF06325_consen  152 LELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGV--EDRIEVS--LSEDL--V  222 (295)
T ss_dssp             HHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT---TTCEEES--CTSCT--C
T ss_pred             HHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCC--CeeEEEE--Eeccc--c
Confidence            44444443  3578999999999999999999985 5899999999999999999999883  4455442  22222  2


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .++||+|+++-..+-   ...+...+.++|+|||+++++....
T Consensus       223 ~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  223 EGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             CS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred             cccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccH
Confidence            478999998644221   2467888899999999999998654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.24  E-value=1.1e-10  Score=96.57  Aligned_cols=109  Identities=9%  Similarity=0.121  Sum_probs=83.4

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+...++.+|||+|||+|.++..+++++.  +++++|+++.+++.+++++..     ..+++++.+|+.++++++.
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~~   76 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPKL   76 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCcccc
Confidence            455666666788999999999999999999854  999999999999999988753     2589999999999887777


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhh--cccCcEEEEEec
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRI--LRSGGVFVGTTF  275 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~--LkpGG~l~i~~~  275 (314)
                      +||.|+++--. |+  ....+..+.+.  +.++|.+++..-
T Consensus        77 ~~d~vi~n~Py-~~--~~~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       77 QPYKVVGNLPY-NI--STPILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             CCCEEEECCCc-cc--HHHHHHHHHhcCCCcceEEEEEEHH
Confidence            79999876443 33  23444444433  347788877553

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.22  E-value=9.4e-11  Score=102.00  Aligned_cols=120  Identities=13%  Similarity=0.154  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ....+++..+....++++|||+|||+|+.+..++.. ....+++++|+++.+++.|+++++..+  ...+++++.+|+.+
T Consensus        54 ~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~  131 (234)
T PLN02781         54 VDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALS  131 (234)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHH
Confidence            344455555556667889999999999988877765 345699999999999999999999987  35789999999865


Q ss_pred             C-C-----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          231 L-P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       231 l-p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      . +     .+.++||+|+....-   ++...++..+.++|+|||++++....
T Consensus       132 ~L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l  180 (234)
T PLN02781        132 ALDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTL  180 (234)
T ss_pred             HHHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            3 2     114689999985432   23357899999999999998875543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.22  E-value=6.3e-11  Score=101.82  Aligned_cols=108  Identities=20%  Similarity=0.333  Sum_probs=91.0

Q ss_pred             HHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCC
Q 021344          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FAS  235 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~  235 (314)
                      .+.+.......+||||||.|.++..+++..|+..++|||+....+..|.+++.+.++   .|+.+++.|+..+-   +++
T Consensus        41 ~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l---~Nlri~~~DA~~~l~~~~~~  117 (227)
T COG0220          41 SALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL---KNLRLLCGDAVEVLDYLIPD  117 (227)
T ss_pred             HHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC---CcEEEEcCCHHHHHHhcCCC
Confidence            344444434689999999999999999999999999999999999999999999873   39999999986531   345


Q ss_pred             CchhhheecchhccCCCH-------------HHHHHHHHhhcccCcEEEEEe
Q 021344          236 GFVDAVHAGAALHCWPSP-------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~-------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++.|-|+..+     |||             ..+++.+.++|||||.|.+.|
T Consensus       118 ~sl~~I~i~F-----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         118 GSLDKIYINF-----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             CCeeEEEEEC-----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence            5899888764     566             378999999999999999998

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.22  E-value=3.6e-10  Score=99.41  Aligned_cols=102  Identities=23%  Similarity=0.267  Sum_probs=77.9

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-CC-CCCchhhheec
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF-ASGFVDAVHAG  244 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p~-~~~~fD~V~~~  244 (314)
                      +.+|||+|||+|.++..+++..+..+++++|+|+.+++.|+++++..+      ++++++|+.+. +. ..++||+|+++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~------~~~~~~D~~~~l~~~~~~~fDlVv~N  160 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG------GTVHEGDLYDALPTALRGRVDILAAN  160 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CEEEEeechhhcchhcCCCEeEEEEC
Confidence            458999999999999999887666699999999999999999987643      47899998652 21 13579999985


Q ss_pred             ch------hccCC----------------C----HHHHHHHHHhhcccCcEEEEEe
Q 021344          245 AA------LHCWP----------------S----PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       245 ~v------l~h~~----------------d----~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      --      +..++                |    ...+++.+.++|||||++++..
T Consensus       161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~  216 (251)
T TIGR03704       161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET  216 (251)
T ss_pred             CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            21      11111                1    1367778889999999999876

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.20  E-value=1.8e-10  Score=99.15  Aligned_cols=98  Identities=18%  Similarity=0.215  Sum_probs=81.6

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ...++||||+|.|..+..++..+.  +|++.|.|+.|....++          .+++++..+  +..-.+.+||+|.|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~----------kg~~vl~~~--~w~~~~~~fDvIscLN  159 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSK----------KGFTVLDID--DWQQTDFKFDVISCLN  159 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHh----------CCCeEEehh--hhhccCCceEEEeehh
Confidence            456899999999999999999876  89999999999776665          345544333  2332356899999999


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +|..-.+|..+|+++++.|+|+|++++....+
T Consensus       160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP  191 (265)
T PF05219_consen  160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLP  191 (265)
T ss_pred             hhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence            99999999999999999999999999977654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK01581 speE spermidine synthase; Validated

Probab=99.20  E-value=2.1e-10  Score=104.17  Aligned_cols=109  Identities=18%  Similarity=0.219  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHh--cCCCCCCCeEEEEecCCC-CCCCCCchh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQ--DNTILTSNLALVRADVCR-LPFASGFVD  239 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~--~~~~~~~~v~~~~~d~~~-lp~~~~~fD  239 (314)
                      ....+||+||||+|..++.+.+..+..+++++|+++.+++.|++.  +..  .+.....+++++.+|+.+ +....++||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            346799999999999999999876556999999999999999972  110  010024789999999865 333456899


Q ss_pred             hheecchhccCCC------HHHHHHHHHhhcccCcEEEEEe
Q 021344          240 AVHAGAALHCWPS------PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       240 ~V~~~~vl~h~~d------~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +|++... .....      -..+++.+.+.|+|||++++..
T Consensus       229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9998732 11100      1468999999999999998875

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.19  E-value=6.9e-11  Score=103.65  Aligned_cols=112  Identities=25%  Similarity=0.368  Sum_probs=88.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCCCeEEEEecCCC------CCCCC
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCR------LPFAS  235 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~v~~~~~d~~~------lp~~~  235 (314)
                      .++..++|+|||.|.-+...-+.+- ..++|+|+++..++.|+++.++....   ....+.|+.+|...      +++.+
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d  194 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD  194 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence            3577899999999988877777663 48999999999999999988875410   01247899999754      45556


Q ss_pred             CchhhheecchhccCC----CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~----d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .+||+|.|.+++|+--    ....+|+++.+.|||||+++.+.+..
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds  240 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS  240 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence            6799999999998742    33578999999999999999988553

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.18  E-value=7.1e-11  Score=98.38  Aligned_cols=124  Identities=19%  Similarity=0.335  Sum_probs=80.2

Q ss_pred             hhhHHHHHHhHHHhcccCCCCCchHHHHHHHHHhccCC-CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 021344          129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY  207 (314)
Q Consensus       129 ~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~  207 (314)
                      +..-..|+.++++....+...    -++.+.+++...+ +..|-|+|||.+.++..+...   .+|...|+..       
T Consensus        38 P~~F~~YH~Gfr~Qv~~WP~n----Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva-------  103 (219)
T PF05148_consen   38 PELFDIYHEGFRQQVKKWPVN----PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVA-------  103 (219)
T ss_dssp             HHHHHHHHHHHHHHHCTSSS-----HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS--------
T ss_pred             HHHHHHHHHHHHHHHhcCCCC----cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC---ceEEEeeccC-------
Confidence            334457888988887765433    3344445554433 468999999999999776533   2799999954       


Q ss_pred             HHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       208 ~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                                 .+-.++.+|+..+|+++++.|++++...|.- .|...++.|..|+|||||.|.|.+....
T Consensus       104 -----------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR  162 (219)
T PF05148_consen  104 -----------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR  162 (219)
T ss_dssp             -----------SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             -----------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc
Confidence                       3445788999999999999999998776654 4788999999999999999999997653

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR00417 speE spermidine synthase

Probab=99.18  E-value=4.8e-10  Score=99.77  Aligned_cols=109  Identities=15%  Similarity=0.191  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCC-CCCCCCchhhhee
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCR-LPFASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~~-lp~~~~~fD~V~~  243 (314)
                      .+.+||+||||+|.++..+.+.....+++++|+++.+++.+++.+..... ....+++++.+|... +....++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            45699999999999999998876556899999999999999998754320 023578888888744 2222468999998


Q ss_pred             cchhccCCC----HHHHHHHHHhhcccCcEEEEEe
Q 021344          244 GAALHCWPS----PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       244 ~~vl~h~~d----~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ......-+.    ...+++.+.+.|+|||++++..
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            654221111    3578899999999999999874

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.17  E-value=1.9e-10  Score=97.91  Aligned_cols=123  Identities=19%  Similarity=0.275  Sum_probs=92.8

Q ss_pred             hhhHHHHHHhHHHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021344          129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (314)
Q Consensus       129 ~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (314)
                      +..-..|+.+++.....+.....+..++.+...   .....|-|+|||.+.++.   ...  ..|+.+|+..        
T Consensus       146 p~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r---~~~~vIaD~GCGEakiA~---~~~--~kV~SfDL~a--------  209 (325)
T KOG3045|consen  146 PTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRR---PKNIVIADFGCGEAKIAS---SER--HKVHSFDLVA--------  209 (325)
T ss_pred             cHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhC---cCceEEEecccchhhhhh---ccc--cceeeeeeec--------
Confidence            344457888888877665544444444444432   345679999999998775   222  3899999843        


Q ss_pred             HHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          209 FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       209 ~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                                .+-+++.+|+.++|+++++.|++++...|.- .|...++.++.|+||+||.++|.+....
T Consensus       210 ----------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SR  268 (325)
T KOG3045|consen  210 ----------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSR  268 (325)
T ss_pred             ----------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhh
Confidence                      5667889999999999999999988766543 5888999999999999999999997653

>PLN02366 spermidine synthase

Probab=99.15  E-value=8.6e-10  Score=99.40  Aligned_cols=110  Identities=16%  Similarity=0.208  Sum_probs=83.1

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCC-C-CCCCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-P-FASGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~~l-p-~~~~~fD~V  241 (314)
                      .++++||+||||.|..++.+++.....+++.+|+++.+++.+++.+...+. ....+++++.+|+... . .++++||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            357899999999999999999875446899999999999999998765221 0246899999997432 1 225689999


Q ss_pred             eecchhccCCC----HHHHHHHHHhhcccCcEEEEEe
Q 021344          242 HAGAALHCWPS----PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       242 ~~~~vl~h~~d----~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++...-.+.+.    ...+++.+.++|+|||++++..
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            98543222221    1368999999999999997754

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=4.6e-10  Score=100.04  Aligned_cols=101  Identities=24%  Similarity=0.389  Sum_probs=80.8

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc--h
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA--A  246 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~--v  246 (314)
                      +|||+|||+|..+..++...++.+|+|+|+|+.+++.|+++++..+.   .++.++.+|+.. +. .++||+|+++=  +
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~-~~-~~~fDlIVsNPPYi  187 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFE-PL-RGKFDLIVSNPPYI  187 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeeccc-cc-CCceeEEEeCCCCC
Confidence            79999999999999999999888999999999999999999999873   667777777654 22 23899999851  1


Q ss_pred             ---hccC------CCH--------------HHHHHHHHhhcccCcEEEEEe
Q 021344          247 ---LHCW------PSP--------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       247 ---l~h~------~d~--------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                         ..+.      .+|              ..++.++.+.|+|||.+++..
T Consensus       188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~  238 (280)
T COG2890         188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI  238 (280)
T ss_pred             CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence               1111      122              367888999999999999877

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.13  E-value=4.6e-10  Score=95.41  Aligned_cols=122  Identities=13%  Similarity=0.143  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE-ecCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVC  229 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~-~d~~  229 (314)
                      .+...++...+.....++|||||.+.|+.+..++...+ +.+++.+|++++..+.|++++++.+  ...++..+. +|..
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal  122 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDAL  122 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHH
Confidence            34455666666666788999999999999999999876 7899999999999999999999998  456688888 4764


Q ss_pred             CC-C-CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          230 RL-P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       230 ~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +. . ...++||+||....-.   +-..++..+.++|+|||++++-.....
T Consensus       123 ~~l~~~~~~~fDliFIDadK~---~yp~~le~~~~lLr~GGliv~DNvl~~  170 (219)
T COG4122         123 DVLSRLLDGSFDLVFIDADKA---DYPEYLERALPLLRPGGLIVADNVLFG  170 (219)
T ss_pred             HHHHhccCCCccEEEEeCChh---hCHHHHHHHHHHhCCCcEEEEeecccC
Confidence            32 2 3468999999765422   235789999999999999998766654

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.09  E-value=1.1e-09  Score=104.11  Aligned_cols=114  Identities=18%  Similarity=0.327  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-  230 (314)
                      +...+.+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++..+.   .+++++.+|+.+ 
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~---~~v~~~~~d~~~~  357 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNGL---DNVTFYHANLEED  357 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEeChHHh
Confidence            34455666667666788999999999999999998874  999999999999999999887763   579999999864 


Q ss_pred             ---CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          231 ---LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 ---lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                         .++.+++||+|++.---.   .....++.+.+ ++|+++++++.
T Consensus       358 l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        358 FTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             hhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEe
Confidence               234456899998742111   12345555555 68999988876

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.08  E-value=1.9e-09  Score=91.25  Aligned_cols=123  Identities=11%  Similarity=0.095  Sum_probs=86.9

Q ss_pred             CchHHHHHHHHHhcc-CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          150 GPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      ..+...+.+.+.+.. .++.+|||+|||+|.++..++.++. .+|+++|.++.+++.++++++..+.   .++.++.+|+
T Consensus        36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~---~~v~~~~~D~  111 (199)
T PRK10909         36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKA---GNARVVNTNA  111 (199)
T ss_pred             CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEEchH
Confidence            334444555555532 4577999999999999987665553 5999999999999999999988763   4799999998


Q ss_pred             CC-CCCCCCchhhheecchhccCCCHHHHHHHHHh--hcccCcEEEEEeccc
Q 021344          229 CR-LPFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR  277 (314)
Q Consensus       229 ~~-lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r--~LkpGG~l~i~~~~~  277 (314)
                      .+ ++...++||+|++.=-... .-...+++.+..  .|+|+|++++.....
T Consensus       112 ~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        112 LSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             HHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            65 2222456999998643211 112345555554  378999999887543

>PHA03412 putative methyltransferase; Provisional

Probab=99.07  E-value=1.3e-09  Score=93.43  Aligned_cols=113  Identities=15%  Similarity=0.191  Sum_probs=81.8

Q ss_pred             CCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeE
Q 021344          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA  222 (314)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~  222 (314)
                      ..|.++..+...+...  ...+.+|||+|||+|.++..+++..   ...+++++|+++.+++.|+++.        .++.
T Consensus        31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~  100 (241)
T PHA03412         31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEAT  100 (241)
T ss_pred             CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCE
Confidence            4466777766555422  2246799999999999999888752   2458999999999999999753        4588


Q ss_pred             EEEecCCCCCCCCCchhhheecchhc-----cC-------CCHHHHHHHHHhhcccCcE
Q 021344          223 LVRADVCRLPFASGFVDAVHAGAALH-----CW-------PSPSNAVAEISRILRSGGV  269 (314)
Q Consensus       223 ~~~~d~~~lp~~~~~fD~V~~~~vl~-----h~-------~d~~~~l~~i~r~LkpGG~  269 (314)
                      ++.+|+...++ +++||+|+++=-+.     +.       .-...+++.+.+++++|+.
T Consensus       101 ~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        101 WINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             EEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            99999977654 56899999953222     11       0134688888886666665

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.06  E-value=9.6e-10  Score=102.53  Aligned_cols=110  Identities=17%  Similarity=0.198  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--C--CCCchhhh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F--ASGFVDAV  241 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~--~~~~fD~V  241 (314)
                      ++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++++.++. ...+++++.+|+.+.-  +  ..++||+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl-~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKL-DLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            47899999999999988776654 45899999999999999999998763 1147999999986531  1  24589999


Q ss_pred             eecchhc---------cCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          242 HAGAALH---------CWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       242 ~~~~vl~---------h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++.--..         ...+-..++....++|+|||.++..+.+.
T Consensus       298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~  342 (396)
T PRK15128        298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG  342 (396)
T ss_pred             EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            9862210         00122345566789999999999877543

>PLN02476 O-methyltransferase

Probab=99.06  E-value=1.9e-09  Score=95.28  Aligned_cols=121  Identities=14%  Similarity=0.120  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ....+++..++...+.++|||||+++|+.+..++... .+.+++.+|.++...+.|+++++..+  ...+++++.+|+.+
T Consensus       104 ~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e  181 (278)
T PLN02476        104 PDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAE  181 (278)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHH
Confidence            3344455555556668899999999999999998753 35589999999999999999999988  45789999999855


Q ss_pred             -CC-C----CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 -LP-F----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 -lp-~----~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       ++ +    ..++||+|+...--   .+...+++.+.++|+|||.+++-....
T Consensus       182 ~L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL~  231 (278)
T PLN02476        182 SLKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNVLW  231 (278)
T ss_pred             HHHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence             22 1    13589999986532   233577889999999999998865544

>PRK03612 spermidine synthase; Provisional

Probab=99.05  E-value=1.3e-09  Score=105.44  Aligned_cols=110  Identities=16%  Similarity=0.151  Sum_probs=82.3

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHhcC--CCCCCCeEEEEecCCCC-CCCCCchh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQDN--TILTSNLALVRADVCRL-PFASGFVD  239 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~~~--~~~~~~v~~~~~d~~~l-p~~~~~fD  239 (314)
                      +++++|||||||+|..++.+.++....+++++|+++++++.++++  +....  ....++++++.+|..+. ...+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            356799999999999999999864336999999999999999983  22210  00236899999998652 22356899


Q ss_pred             hheecchhccCCCH-----HHHHHHHHhhcccCcEEEEEe
Q 021344          240 AVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       240 ~V~~~~vl~h~~d~-----~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +|++...-...+.+     ..+++.+.+.|||||++++..
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            99997543222221     358999999999999999876

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.05  E-value=4.7e-09  Score=87.97  Aligned_cols=121  Identities=19%  Similarity=0.276  Sum_probs=92.7

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCC-eEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~-v~~~~~d~~~lp  232 (314)
                      +.+.+.++++.. +.+|||||||+|..+.+++...+.....-.|+++......+..+...+.   .| ..-+..|+...+
T Consensus        14 Il~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~   89 (204)
T PF06080_consen   14 ILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPP   89 (204)
T ss_pred             HHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCC
Confidence            455666776652 3269999999999999999999988889999999988777777776653   22 233455665542


Q ss_pred             --C------CCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecccC
Q 021344          233 --F------ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       233 --~------~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                        .      ..++||.|++.+++|-.+-.  ..+++.+.++|++||.|++..+...
T Consensus        90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~  145 (204)
T PF06080_consen   90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR  145 (204)
T ss_pred             CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence              2      24589999999998876533  5799999999999999999887664

The function of this family is unknown.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.04  E-value=8.3e-10  Score=93.77  Aligned_cols=117  Identities=14%  Similarity=0.215  Sum_probs=90.7

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-C-
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-  232 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p-  232 (314)
                      +++..+....+.++|||||+++|+.+..+++..+ +.+++.+|+++...+.|++.++..+  ...+++++.+|+.+. + 
T Consensus        35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~  112 (205)
T PF01596_consen   35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLPE  112 (205)
T ss_dssp             HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHHH
T ss_pred             HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHHH
Confidence            3444444455678999999999999999998743 5799999999999999999999987  457899999998542 2 


Q ss_pred             ----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                          ...++||+|+....-.   +-...+..+.++|+|||.+++-....
T Consensus       113 l~~~~~~~~fD~VFiDa~K~---~y~~y~~~~~~ll~~ggvii~DN~l~  158 (205)
T PF01596_consen  113 LANDGEEGQFDFVFIDADKR---NYLEYFEKALPLLRPGGVIIADNVLW  158 (205)
T ss_dssp             HHHTTTTTSEEEEEEESTGG---GHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred             HHhccCCCceeEEEEccccc---chhhHHHHHhhhccCCeEEEEccccc
Confidence                1135799999876433   34577888999999999999876554

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.04  E-value=4.2e-10  Score=94.70  Aligned_cols=109  Identities=15%  Similarity=0.161  Sum_probs=80.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ...+.||.|+|.|+.+..+.... ..+|-.+|+.+..++.|++.+....   ....++++..+++.....++||+|++-+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEehH
Confidence            45689999999999999886654 3499999999999999998766522   2446777777776654567999999999


Q ss_pred             hhccCCCHH--HHHHHHHhhcccCcEEEEEecccC
Q 021344          246 ALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       246 vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++.|+.|.+  .+|+.+...|+|||++++-+....
T Consensus       131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~  165 (218)
T PF05891_consen  131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSS  165 (218)
T ss_dssp             -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence            999999765  899999999999999999776553

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.04  E-value=9.4e-10  Score=110.10  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=84.6

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCCchhhheec
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~~fD~V~~~  244 (314)
                      ++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++++.++. ...+++++++|+.+.. -..++||+|++.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~-~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGL-SGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC-CccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            478999999999999999998763 4799999999999999999998773 1147999999985521 114689999984


Q ss_pred             c-----------hhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          245 A-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       245 ~-----------vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      -           +.....+...++..+.++|+|||.+++.+..
T Consensus       616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            1           1112223456788889999999999887744

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.03  E-value=1.8e-09  Score=98.32  Aligned_cols=113  Identities=12%  Similarity=0.184  Sum_probs=82.1

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      .++.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++++..+.   .+++++++|+.++..
T Consensus       161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l---~~v~~~~~D~~~~~~  235 (315)
T PRK03522        161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGL---TNVQFQALDSTQFAT  235 (315)
T ss_pred             HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCHHHHHH
Confidence            344455555544578999999999999999999764  999999999999999999988763   579999999976532


Q ss_pred             -CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          234 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                       ..++||+|++.---.   .....+.++...++|+++++++.
T Consensus       236 ~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc  274 (315)
T PRK03522        236 AQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSC  274 (315)
T ss_pred             hcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEEC
Confidence             235799999752200   01122333334467888888766

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.02  E-value=2e-09  Score=96.67  Aligned_cols=119  Identities=20%  Similarity=0.274  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~~~  230 (314)
                      -+....+.++....+|..|||-=||||.++..+.-.|.  +++|.|++..|++-|+.+++..++   ....+... |+..
T Consensus       183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~i---~~~~~~~~~Da~~  257 (347)
T COG1041         183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYGI---EDYPVLKVLDATN  257 (347)
T ss_pred             HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhCc---CceeEEEeccccc
Confidence            34566777777888899999999999999999998887  999999999999999999998763   56656666 9999


Q ss_pred             CCCCCCchhhheecchh-----ccCCC----HHHHHHHHHhhcccCcEEEEEec
Q 021344          231 LPFASGFVDAVHAGAAL-----HCWPS----PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl-----~h~~d----~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +|+++.+||.|++.--.     -....    ...+|+.+.++||+||++++..+
T Consensus       258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            99998889999973110     00111    24789999999999999999885

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=99.01  E-value=2.7e-10  Score=106.05  Aligned_cols=116  Identities=25%  Similarity=0.359  Sum_probs=82.6

Q ss_pred             CchHHHHHHHHHhcc--C--CCCeEEEEcCcccHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHHHHhcCCCCCCCeE
Q 021344          150 GPDEEFKMAQEYFKS--A--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVAL---DFSENMLRQCYDFIKQDNTILTSNLA  222 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~--~--~~~~iLDiGcG~G~~~~~l~~~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~~~~~~v~  222 (314)
                      +....++.+.+.++.  .  .-.++||+|||+|.|+.+|.+++-  .+..+   |..+..++.|.+          ..+.
T Consensus        97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfale----------RGvp  164 (506)
T PF03141_consen   97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALE----------RGVP  164 (506)
T ss_pred             CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhh----------cCcc
Confidence            345566777777765  2  234689999999999999999853  22222   444456666655          2344


Q ss_pred             EEEec--CCCCCCCCCchhhheecchhccC-CCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          223 LVRAD--VCRLPFASGFVDAVHAGAALHCW-PSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       223 ~~~~d--~~~lp~~~~~fD~V~~~~vl~h~-~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .+.+-  ...+||++++||+|.|...+-.+ .+...+|-++.|+|+|||+++++.+-.
T Consensus       165 a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  165 AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             hhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence            44333  36799999999999998886544 344578999999999999999988543

; GO: 0008168 methyltransferase activity

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.01  E-value=2.1e-09  Score=89.15  Aligned_cols=114  Identities=19%  Similarity=0.167  Sum_probs=76.8

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCCCch
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFV  238 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~~~~~f  238 (314)
                      ...++.+|||+|||+|..+..++......+|+..|..+ .++..+.+++.++.....++.+...|..+..    ....+|
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~  120 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF  120 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred             hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence            34568899999999999999999884456999999999 9999999888754112356777777764411    234589


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      |+|++..++..-.....+++.+.++|+++|.+++....+
T Consensus       121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            999999999987777899999999999999877777554

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.98  E-value=4.1e-09  Score=93.82  Aligned_cols=127  Identities=13%  Similarity=0.181  Sum_probs=88.1

Q ss_pred             CCCchHHHHHHHHHhcc-CCCCeEEEEcCcccH----HHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHh------
Q 021344          148 FPGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGL----FSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQ------  212 (314)
Q Consensus       148 ~~~~~~~~~~l~~~l~~-~~~~~iLDiGcG~G~----~~~~l~~~~----~~~~v~giD~s~~~~~~a~~~~~~------  212 (314)
                      |......++.+.+.+.. ...-+|+..||++|.    ++..+.+..    ...+|+|+|+|+.+++.|++-.-.      
T Consensus        96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~  175 (287)
T PRK10611         96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKT  175 (287)
T ss_pred             ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhc
Confidence            33344445555544322 223689999999996    333333322    145899999999999999874211      


Q ss_pred             ------------c-----C-----CCCCCCeEEEEecCCCCCCC-CCchhhheecchhccCCCH--HHHHHHHHhhcccC
Q 021344          213 ------------D-----N-----TILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSG  267 (314)
Q Consensus       213 ------------~-----~-----~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpG  267 (314)
                                  .     +     ......|.|.+.|+.+.+++ .+.||+|+|.+|+.|+.+.  .++++.+.+.|+||
T Consensus       176 ~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg  255 (287)
T PRK10611        176 LSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD  255 (287)
T ss_pred             CCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence                        0     0     00125688999998775543 5789999999999999654  58999999999999


Q ss_pred             cEEEEEe
Q 021344          268 GVFVGTT  274 (314)
Q Consensus       268 G~l~i~~  274 (314)
                      |+|++-.
T Consensus       256 G~L~lG~  262 (287)
T PRK10611        256 GLLFAGH  262 (287)
T ss_pred             cEEEEeC
Confidence            9987755

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.97  E-value=3.1e-09  Score=100.90  Aligned_cols=113  Identities=17%  Similarity=0.264  Sum_probs=85.1

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--  231 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--  231 (314)
                      ..+.+.+.+...++.+|||+|||+|.++..+++...  +|+|+|+++.+++.|+++++..+.   .+++++.+|+.+.  
T Consensus       280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~---~nv~~~~~d~~~~l~  354 (431)
T TIGR00479       280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGI---ANVEFLAGTLETVLP  354 (431)
T ss_pred             HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCC---CceEEEeCCHHHHHH
Confidence            445566666666678999999999999999998765  899999999999999999988763   6899999998652  


Q ss_pred             --CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          232 --PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                        ++.+++||+|++.-.=  ..-...+++.+.+ ++|+++++++.
T Consensus       355 ~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc  396 (431)
T TIGR00479       355 KQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSC  396 (431)
T ss_pred             HHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcC
Confidence              2334679999874220  0112455666554 88999887764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.95  E-value=7.3e-09  Score=89.20  Aligned_cols=125  Identities=15%  Similarity=0.204  Sum_probs=92.2

Q ss_pred             chHHHHHHHHHhccC---CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          151 PDEEFKMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~---~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      .++.++++.+.+...   .+..|||+|||+|..+..++...+.+.++++|.|+.++..|.++.+..+  ...++..+.-+
T Consensus       130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~  207 (328)
T KOG2904|consen  130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNI  207 (328)
T ss_pred             HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecc
Confidence            355566776666543   3447999999999999999998888999999999999999999999877  45777777554


Q ss_pred             CCC-----CCCCCCchhhheecch--h----cc--------------------CCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          228 VCR-----LPFASGFVDAVHAGAA--L----HC--------------------WPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       228 ~~~-----lp~~~~~fD~V~~~~v--l----~h--------------------~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+.     .+...++.|+++++--  .    ..                    ......++.-+.|.|+|||.+.+....
T Consensus       208 me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~  287 (328)
T KOG2904|consen  208 MESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE  287 (328)
T ss_pred             cccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence            432     3455688999988521  1    10                    011124677788999999999998854


Q ss_pred             c
Q 021344          277 R  277 (314)
Q Consensus       277 ~  277 (314)
                      .
T Consensus       288 ~  288 (328)
T KOG2904|consen  288 R  288 (328)
T ss_pred             c
Confidence            4

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.95  E-value=3e-09  Score=102.50  Aligned_cols=101  Identities=14%  Similarity=0.212  Sum_probs=86.2

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhhee
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~~  243 (314)
                      .+..+||||||.|.++..++...|+..++|+|+....+..+.++....++   .|+.++..|+..+  -++++++|.|+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l---~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI---TNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC---CeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            46689999999999999999999999999999999999999888877763   7888888886432  256788998887


Q ss_pred             cchhccCCCH-------------HHHHHHHHhhcccCcEEEEEe
Q 021344          244 GAALHCWPSP-------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       244 ~~vl~h~~d~-------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+     |||             ..+++.+.++|||||.+.+.|
T Consensus       424 ~F-----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        424 LF-----PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             EC-----CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence            54     565             378999999999999999988

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.94  E-value=3.5e-09  Score=89.56  Aligned_cols=109  Identities=16%  Similarity=0.217  Sum_probs=75.9

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---C-------------------------
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---L-------------------------  217 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~-------------------------  217 (314)
                      .+..+|||||..|.++..+++.+....++|+||++..++.|++.++.....   .                         
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            467899999999999999999977778999999999999999977652200   0                         


Q ss_pred             ----CCCeEEEEecCC-----CCCCCCCchhhheecchhccC----CC--HHHHHHHHHhhcccCcEEEEEe
Q 021344          218 ----TSNLALVRADVC-----RLPFASGFVDAVHAGAALHCW----PS--PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       218 ----~~~v~~~~~d~~-----~lp~~~~~fD~V~~~~vl~h~----~d--~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                          ..++.+...+..     -+.+....||+|+|..+--++    .|  ...+++.+.++|.|||+|++.-
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                001111111100     011234579999986553322    12  3589999999999999998854

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.94  E-value=1.6e-08  Score=80.88  Aligned_cols=125  Identities=16%  Similarity=0.295  Sum_probs=104.0

Q ss_pred             cCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEE
Q 021344          145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL  223 (314)
Q Consensus       145 ~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~  223 (314)
                      .+-.+...-..+.|...++...+.-|||+|.|+|-++.++.+++ ....++++|.|++......+.        .+.+++
T Consensus        27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~i   98 (194)
T COG3963          27 GAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNI   98 (194)
T ss_pred             eeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccc
Confidence            33456777788888888898889999999999999999999986 356899999999999988884        467779


Q ss_pred             EEecCCCCC-----CCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          224 VRADVCRLP-----FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       224 ~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +.+|+.++.     ..+..||.|++.--+-.++-.  .+.|+++...|.+||.++..+++.
T Consensus        99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963          99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            999987764     456689999998777766543  478999999999999999999874

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.93  E-value=1.3e-08  Score=90.23  Aligned_cols=105  Identities=11%  Similarity=0.172  Sum_probs=84.7

Q ss_pred             CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-CCCeEEEEecCCCC-CCCCCchhhheecc
Q 021344          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRL-PFASGFVDAVHAGA  245 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~~~v~~~~~d~~~l-p~~~~~fD~V~~~~  245 (314)
                      ++||-||.|.|..++.+.+..+..+++.+|+++..++.+++.+....... ..+++++..|..+. .-..++||+|++..
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            69999999999999999999877899999999999999999887754212 37899999998653 21233799999854


Q ss_pred             hhccCCCH------HHHHHHHHhhcccCcEEEEEe
Q 021344          246 ALHCWPSP------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       246 vl~h~~d~------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .=. . .|      ..+++.+.+.|+++|+++...
T Consensus       158 tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         158 TDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            311 1 12      689999999999999999884

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.92  E-value=7.7e-09  Score=90.21  Aligned_cols=120  Identities=13%  Similarity=0.119  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ....+++..++...+.++|||||+++|+.+..++.. .++.+++.+|.++...+.|++.++..+  ...+|+++.+|+.+
T Consensus        65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~a~e  142 (247)
T PLN02589         65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGPALP  142 (247)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeccHHH
Confidence            344455555556666789999999999999988876 346699999999999999999999988  46899999999855


Q ss_pred             C-CC------CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          231 L-PF------ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       231 l-p~------~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      . +-      ..++||+|+...--.   +....+..+.+.|+|||++++-...
T Consensus       143 ~L~~l~~~~~~~~~fD~iFiDadK~---~Y~~y~~~~l~ll~~GGviv~DNvl  192 (247)
T PLN02589        143 VLDQMIEDGKYHGTFDFIFVDADKD---NYINYHKRLIDLVKVGGVIGYDNTL  192 (247)
T ss_pred             HHHHHHhccccCCcccEEEecCCHH---HhHHHHHHHHHhcCCCeEEEEcCCC
Confidence            2 21      136899999865422   2246788888999999998875443

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.92  E-value=2.5e-09  Score=89.66  Aligned_cols=105  Identities=19%  Similarity=0.299  Sum_probs=91.1

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v  246 (314)
                      ...++|||||.|...+.+...+ -.+++-+|.|-.|++.++..-.     ....+....+|-+.++|.+++||+|+++..
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-----p~i~~~~~v~DEE~Ldf~ens~DLiisSls  146 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-----PSIETSYFVGDEEFLDFKENSVDLIISSLS  146 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-----CceEEEEEecchhcccccccchhhhhhhhh
Confidence            5679999999999999999987 4589999999999999987311     124577888999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       247 l~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +|++.|...-+.+++..|||+|.++.+.+..
T Consensus       147 lHW~NdLPg~m~~ck~~lKPDg~Fiasmlgg  177 (325)
T KOG2940|consen  147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGG  177 (325)
T ss_pred             hhhhccCchHHHHHHHhcCCCccchhHHhcc
Confidence            9999999999999999999999998766543

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.92  E-value=5.6e-09  Score=93.03  Aligned_cols=86  Identities=12%  Similarity=0.199  Sum_probs=69.6

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++..      .+++++++|+.+
T Consensus        27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~   98 (272)
T PRK00274         27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE------DNLTIIEGDALK   98 (272)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc------CceEEEEChhhc
Confidence            445566777777777888999999999999999999976  999999999999999886532      579999999998


Q ss_pred             CCCCCCchhhheec
Q 021344          231 LPFASGFVDAVHAG  244 (314)
Q Consensus       231 lp~~~~~fD~V~~~  244 (314)
                      +++++-.+|.|+++
T Consensus        99 ~~~~~~~~~~vv~N  112 (272)
T PRK00274         99 VDLSELQPLKVVAN  112 (272)
T ss_pred             CCHHHcCcceEEEe
Confidence            87653224666654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.91  E-value=5.8e-09  Score=97.06  Aligned_cols=111  Identities=12%  Similarity=0.144  Sum_probs=81.7

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA  234 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~  234 (314)
                      +.+.+++...++.+|||+|||+|.++..++..+.  +|+|+|+++.+++.|+++++..+.   .+++++.+|+.+.. ..
T Consensus       223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~~~  297 (374)
T TIGR02085       223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFATAQ  297 (374)
T ss_pred             HHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHHhc
Confidence            3444454434567999999999999999998764  999999999999999999988763   58999999986532 11


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .++||+|++.=--..  -...+++.+. .++|+++++++.
T Consensus       298 ~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       298 MSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             CCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence            246999987422111  1134556564 479999999887

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.91  E-value=3.1e-09  Score=97.38  Aligned_cols=143  Identities=27%  Similarity=0.372  Sum_probs=109.1

Q ss_pred             HHHHHhHHHhcccCCCCCchHHHHHHH------H-HhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 021344          133 FLYERGWRQNFNRSGFPGPDEEFKMAQ------E-YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ  205 (314)
Q Consensus       133 ~~~~~~w~~~~~~~~~~~~~~~~~~l~------~-~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~  205 (314)
                      ..|.+.|-..+....++......+...      . .....++..++|+|||.|....++.... .+.++|+|.++..+..
T Consensus        70 dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~  148 (364)
T KOG1269|consen   70 DLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFR  148 (364)
T ss_pred             hhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHH
Confidence            345666777666555433322211111      0 1123456689999999999999888775 4599999999998888


Q ss_pred             HHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          206 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       206 a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +........  ....-.++.+|+.+.|+++++||.+.+..+.+|.+++..+++|+.|++||||+++..++...
T Consensus       149 ~~~~~~~~~--l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~  219 (364)
T KOG1269|consen  149 ANELAKKAY--LDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT  219 (364)
T ss_pred             HHHHHHHHH--hhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence            877666655  23455568899999999999999999999999999999999999999999999999887653

>PLN02672 methionine S-methyltransferase

Probab=98.91  E-value=1.6e-08  Score=103.82  Aligned_cols=108  Identities=15%  Similarity=0.161  Sum_probs=82.1

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-------------CCCCeEEEEecCCCCCC
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LTSNLALVRADVCRLPF  233 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-------------~~~~v~~~~~d~~~lp~  233 (314)
                      +.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|+++++.+++.             ...+++++++|+.....
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999999887679999999999999999999865310             12479999999865321


Q ss_pred             C-CCchhhheec--------------chhccCC------------------CH------HHHHHHHHhhcccCcEEEEEe
Q 021344          234 A-SGFVDAVHAG--------------AALHCWP------------------SP------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 ~-~~~fD~V~~~--------------~vl~h~~------------------d~------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      . ..+||+|+++              .|.+|-+                  +.      .+++.+..++|||||.+++..
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            1 2369999985              1221110                  01      467888889999999999877

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.90  E-value=1.2e-08  Score=85.06  Aligned_cols=119  Identities=20%  Similarity=0.263  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEE
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG---------VVALDFSENMLRQCYDFIKQDNTILTSNLAL  223 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~---------v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~  223 (314)
                      .....+.......++..+||.-||+|.++.+.+..+.+..         ++|.|+++.+++.++++++..+  ....+.+
T Consensus        15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~~~~i~~   92 (179)
T PF01170_consen   15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--VEDYIDF   92 (179)
T ss_dssp             HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEE
T ss_pred             HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--cCCceEE
Confidence            3455666677777888999999999999999888766555         8999999999999999999887  4567999


Q ss_pred             EEecCCCCCCCCCchhhheecchhccC-CC---H----HHHHHHHHhhcccCcEEEEEe
Q 021344          224 VRADVCRLPFASGFVDAVHAGAALHCW-PS---P----SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       224 ~~~d~~~lp~~~~~fD~V~~~~vl~h~-~d---~----~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+.|+.++++.++++|+|+++--...- .+   .    ..+++++.++|++ ..+++.+
T Consensus        93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~  150 (179)
T PF01170_consen   93 IQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT  150 (179)
T ss_dssp             EE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred             EecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence            999999999778899999985322111 11   1    3578888999999 4344433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.90  E-value=6.9e-09  Score=87.46  Aligned_cols=109  Identities=16%  Similarity=0.181  Sum_probs=70.1

Q ss_pred             CCCeEEEEcCcccH----HHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHhc-------------------C---
Q 021344          166 QGGLLVDVSCGSGL----FSRKFAKS-----GTYSGVVALDFSENMLRQCYDFIKQD-------------------N---  214 (314)
Q Consensus       166 ~~~~iLDiGcG~G~----~~~~l~~~-----~~~~~v~giD~s~~~~~~a~~~~~~~-------------------~---  214 (314)
                      ..-+|+..||++|.    ++..+.+.     ....+++|+|+|+.+++.|++-.-..                   +   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45689999999996    33333331     22469999999999999996521110                   0   


Q ss_pred             ---CCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEe
Q 021344          215 ---TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       215 ---~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~  274 (314)
                         .....+|.|...|+.+.+...+.||+|+|.+||-++.+.  .++++.+++.|+|||+|++..
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence               001247899999998844456789999999999999766  479999999999999999865

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.90  E-value=1e-08  Score=90.72  Aligned_cols=86  Identities=16%  Similarity=0.285  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +++++|+++.+++.+++++..     ..+++++.+|+.++
T Consensus        15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~   87 (258)
T PRK14896         15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKV   87 (258)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccC
Confidence            44566777777777789999999999999999999864  899999999999999987753     25899999999887


Q ss_pred             CCCCCchhhheecch
Q 021344          232 PFASGFVDAVHAGAA  246 (314)
Q Consensus       232 p~~~~~fD~V~~~~v  246 (314)
                      +++  .||.|+++--
T Consensus        88 ~~~--~~d~Vv~NlP  100 (258)
T PRK14896         88 DLP--EFNKVVSNLP  100 (258)
T ss_pred             Cch--hceEEEEcCC
Confidence            765  4898887644

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.89  E-value=2.1e-08  Score=94.85  Aligned_cols=102  Identities=15%  Similarity=0.249  Sum_probs=74.4

Q ss_pred             CCeEEEEcCcccHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      +..|||||||+|-+....++.+    ...+|+++|-++.++...+++++..+  ...+|+++.+|++++..+ +++|+|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d~r~v~lp-ekvDIIV  263 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGDMREVELP-EKVDIIV  263 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCcccCCCCC-CceeEEE
Confidence            5679999999999987766654    34699999999999888888767666  458899999999998765 4899999


Q ss_pred             ecc--hhccCCCHHHHHHHHHhhcccCcEEE
Q 021344          243 AGA--ALHCWPSPSNAVAEISRILRSGGVFV  271 (314)
Q Consensus       243 ~~~--vl~h~~d~~~~l~~i~r~LkpGG~l~  271 (314)
                      +-.  .+-.-.--...|....|.|||||+++
T Consensus       264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  264 SELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            721  11111122356888999999999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=1.6e-08  Score=82.93  Aligned_cols=73  Identities=25%  Similarity=0.342  Sum_probs=62.5

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      .-.+.+|+|+|||||.++...+..|+ .+|+|+|+++++++.++++.++..    .++.++.+|+.+..   +.||.|++
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~----g~v~f~~~dv~~~~---~~~dtvim  114 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELL----GDVEFVVADVSDFR---GKFDTVIM  114 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhC----CceEEEEcchhhcC---CccceEEE
Confidence            44677899999999999999999885 599999999999999999998843    78999999998863   56777776


Q ss_pred             c
Q 021344          244 G  244 (314)
Q Consensus       244 ~  244 (314)
                      +
T Consensus       115 N  115 (198)
T COG2263         115 N  115 (198)
T ss_pred             C
Confidence            4

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.87  E-value=8e-09  Score=92.35  Aligned_cols=103  Identities=20%  Similarity=0.298  Sum_probs=81.3

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      -.+++|||+|||+|-++...++.| ..+|+++|.|.-+ +.|++.+..++  ....++++++.++++.++.++.|+|++-
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~--~~~ii~vi~gkvEdi~LP~eKVDiIvSE  134 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNG--LEDVITVIKGKVEDIELPVEKVDIIVSE  134 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcC--ccceEEEeecceEEEecCccceeEEeeh
Confidence            357899999999999999999999 5699999987755 99999999888  4567999999998876667899999984


Q ss_pred             ch---hccCCCHHHHHHHHHhhcccCcEEE
Q 021344          245 AA---LHCWPSPSNAVAEISRILRSGGVFV  271 (314)
Q Consensus       245 ~v---l~h~~d~~~~l~~i~r~LkpGG~l~  271 (314)
                      +.   |-+=.-...+|-.=-+.|+|||.++
T Consensus       135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            43   2221123445555568999999865

>PRK04148 hypothetical protein; Provisional

Probab=98.87  E-value=2.9e-08  Score=77.84  Aligned_cols=106  Identities=12%  Similarity=0.172  Sum_probs=75.6

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ..+.+.+.+...++.++||||||.|. ++..|++.|.  +|+++|+++..++.+++          ..++++.+|+.+..
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~----------~~~~~v~dDlf~p~   71 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKK----------LGLNAFVDDLFNPN   71 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHH----------hCCeEEECcCCCCC
Confidence            34456666665567899999999996 8888888876  99999999999988877          45789999998754


Q ss_pred             CC-CCchhhheecchhccCCCHHHHHHHHHhhccc-CcEEEEEeccc
Q 021344          233 FA-SGFVDAVHAGAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR  277 (314)
Q Consensus       233 ~~-~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp-GG~l~i~~~~~  277 (314)
                      +. -+.+|+|.+..-      |..+..-+.++-|. |.-+++...+.
T Consensus        72 ~~~y~~a~liysirp------p~el~~~~~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         72 LEIYKNAKLIYSIRP------PRDLQPFILELAKKINVPLIIKPLSG  112 (134)
T ss_pred             HHHHhcCCEEEEeCC------CHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            32 346888888643      44444444444433 56677666544

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.87  E-value=6e-08  Score=85.54  Aligned_cols=80  Identities=11%  Similarity=0.235  Sum_probs=66.4

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  .++++|+++.+++.++++...     ..+++++.+|+..
T Consensus        14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~   86 (253)
T TIGR00755        14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALK   86 (253)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhc
Confidence            344556677777777788999999999999999999986  799999999999999987643     2689999999988


Q ss_pred             CCCCCCchh
Q 021344          231 LPFASGFVD  239 (314)
Q Consensus       231 lp~~~~~fD  239 (314)
                      .++.  +||
T Consensus        87 ~~~~--~~d   93 (253)
T TIGR00755        87 VDLP--DFP   93 (253)
T ss_pred             CChh--HcC
Confidence            8765  466

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.85  E-value=8e-08  Score=84.00  Aligned_cols=108  Identities=13%  Similarity=0.185  Sum_probs=90.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCchh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD  239 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~fD  239 (314)
                      ...-+||||.||.|++........+.  .++.-.|+|+..++..++.+++.++  ..-++|.++|+.+..   --+-..+
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--~~i~~f~~~dAfd~~~l~~l~p~P~  211 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--EDIARFEQGDAFDRDSLAALDPAPT  211 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--ccceEEEecCCCCHhHhhccCCCCC
Confidence            45678999999999998888887664  6899999999999999999999884  345599999987631   1133579


Q ss_pred             hheecchhccCCCHH---HHHHHHHhhcccCcEEEEEe
Q 021344          240 AVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~---~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +++.+..+|.++|-.   ..++.+.+.+.|||+++.+.
T Consensus       212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            999999999999854   57999999999999998866

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.85  E-value=1.8e-08  Score=90.46  Aligned_cols=87  Identities=16%  Similarity=0.277  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +++++|+++.+++.+++++...+  ...+++++.+|+.+.
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~--~~~~v~ii~~Dal~~   97 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSP--LASKLEVIEGDALKT   97 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECCHhhh
Confidence            34556777777777889999999999999999998865  89999999999999999887654  236899999999876


Q ss_pred             CCCCCchhhheec
Q 021344          232 PFASGFVDAVHAG  244 (314)
Q Consensus       232 p~~~~~fD~V~~~  244 (314)
                      +++  .||+|+++
T Consensus        98 ~~~--~~d~VvaN  108 (294)
T PTZ00338         98 EFP--YFDVCVAN  108 (294)
T ss_pred             ccc--ccCEEEec
Confidence            643  68988764

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.83  E-value=2.3e-08  Score=92.94  Aligned_cols=111  Identities=16%  Similarity=0.205  Sum_probs=85.2

Q ss_pred             HHHHHhccC-CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          157 MAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      .+.+.+... .+.+|||++||+|.++..++......+|+++|+++.+++.++++++.++.   .++.++.+|+..+....
T Consensus        47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~~~  123 (382)
T PRK04338         47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLHEE  123 (382)
T ss_pred             HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHhhc
Confidence            444444332 34689999999999999998765445899999999999999999988763   56778999986532214


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++||+|++.-    ...+..+++...+.+++||+++++.
T Consensus       124 ~~fD~V~lDP----~Gs~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        124 RKFDVVDIDP----FGSPAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             CCCCEEEECC----CCCcHHHHHHHHHHhcCCCEEEEEe
Confidence            5799999742    1445788888788899999999984

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.78  E-value=3.4e-08  Score=88.52  Aligned_cols=99  Identities=16%  Similarity=0.251  Sum_probs=82.9

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v  246 (314)
                      -...+|+|.|.|..+..+...++  .+-+++++...+-.++..+.       .+|+.+.+|..+- .|.  -|+|++-++
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P~--~daI~mkWi  245 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TPK--GDAIWMKWI  245 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CCC--cCeEEEEee
Confidence            36899999999999999999887  78899999888777776542       3488888998664 443  469999999


Q ss_pred             hccCCCHH--HHHHHHHhhcccCcEEEEEeccc
Q 021344          247 LHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       247 l~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      |||+.|-+  ++|+++++.|+|||.+++.+...
T Consensus       246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~  278 (342)
T KOG3178|consen  246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVT  278 (342)
T ss_pred             cccCChHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence            99999875  89999999999999999988743

>PRK00536 speE spermidine synthase; Provisional

Probab=98.77  E-value=9.5e-08  Score=83.87  Aligned_cols=100  Identities=14%  Similarity=0.137  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ...++||-||.|.|..++++.++..  +|+.+|+++.+++.+++.+..... -..++++++.. +.+  -..++||+|+.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIv  145 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIIC  145 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEE
Confidence            4568999999999999999999853  999999999999999995554211 13467777752 221  12368999998


Q ss_pred             cchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ...     .+..+++.+.+.|+|||+++...
T Consensus       146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        146 LQE-----PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             cCC-----CChHHHHHHHHhcCCCcEEEECC
Confidence            642     45688899999999999998865

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.77  E-value=1.2e-07  Score=79.81  Aligned_cols=120  Identities=14%  Similarity=0.110  Sum_probs=82.7

Q ss_pred             HHHHHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ...+.+...+. ..++.++||++||+|.++..++.++. ..|+++|.++.+++.++++++..+.  ..+++++.+|+.+.
T Consensus        35 ~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~--~~~~~~~~~D~~~~  111 (189)
T TIGR00095        35 VVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS--GEQAEVVRNSALRA  111 (189)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC--cccEEEEehhHHHH
Confidence            33334444432 23578999999999999999999985 4899999999999999999988762  34789999998442


Q ss_pred             -C-C-CCC-chhhheecchhccCCCHHHHHHHHH--hhcccCcEEEEEecc
Q 021344          232 -P-F-ASG-FVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFL  276 (314)
Q Consensus       232 -p-~-~~~-~fD~V~~~~vl~h~~d~~~~l~~i~--r~LkpGG~l~i~~~~  276 (314)
                       . + ... .||+|+..=-... ......+..+.  .+|+++|.+++....
T Consensus       112 l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       112 LKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             HHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence             2 1 122 4788876422221 12344455443  368889988887644

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PLN02823 spermine synthase

Probab=98.76  E-value=1.1e-07  Score=86.85  Aligned_cols=108  Identities=18%  Similarity=0.230  Sum_probs=81.6

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCC-CCCCCCchhhhee
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCR-LPFASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~~-lp~~~~~fD~V~~  243 (314)
                      ..++||.||+|.|..++.+.+.....+++.+|+++.+++.+++.+..... ....+++++.+|... +...+++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            45789999999999999999876556899999999999999998754210 024789999999865 2334568999998


Q ss_pred             cchhccCC-C------HHHHHH-HHHhhcccCcEEEEEe
Q 021344          244 GAALHCWP-S------PSNAVA-EISRILRSGGVFVGTT  274 (314)
Q Consensus       244 ~~vl~h~~-d------~~~~l~-~i~r~LkpGG~l~i~~  274 (314)
                      ... .... .      ...+++ .+.+.|+|||++++..
T Consensus       183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            631 1110 0      135787 8999999999987754

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=5.3e-08  Score=80.83  Aligned_cols=112  Identities=26%  Similarity=0.358  Sum_probs=85.2

Q ss_pred             HHHHHhc--cCCCCeEEEEcCcccHHHHHHHHh-C-CCCeEEEEeCCHHHHHHHHHHHHhcC-------CCCCCCeEEEE
Q 021344          157 MAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS-G-TYSGVVALDFSENMLRQCYDFIKQDN-------TILTSNLALVR  225 (314)
Q Consensus       157 ~l~~~l~--~~~~~~iLDiGcG~G~~~~~l~~~-~-~~~~v~giD~s~~~~~~a~~~~~~~~-------~~~~~~v~~~~  225 (314)
                      .+.++|.  ..++.++||+|.|+|+++..++.. + ++..++|||.-++.++.+++++...-       .....++.++.
T Consensus        71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv  150 (237)
T KOG1661|consen   71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV  150 (237)
T ss_pred             HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence            4444555  567999999999999998888754 2 23355999999999999999887642       00235788999


Q ss_pred             ecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       226 ~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +|..........||.|++...      .....+++...|++||.+++-.
T Consensus       151 GDgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  151 GDGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             CCccccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEee
Confidence            999887667789999999754      3445677777899999998865

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.72  E-value=9.2e-08  Score=79.80  Aligned_cols=98  Identities=15%  Similarity=0.198  Sum_probs=83.5

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhc
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH  248 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (314)
                      +++|||+|.|.=+..++-..|+.+++.+|....-+...+.....-++   .|++++++.+++ +...++||+|++..+  
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~-~~~~~~fd~v~aRAv--  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVINGRAEE-PEYRESFDVVTARAV--  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEEEeeecc-cccCCCccEEEeehh--
Confidence            79999999999999999888888999999999999998888888774   689999999988 445678999999876  


Q ss_pred             cCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          249 CWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       249 h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                        .+...++.-+...|++||.++..-
T Consensus       125 --~~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  125 --APLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence              567888999999999999998876

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=1.2e-08  Score=88.70  Aligned_cols=108  Identities=26%  Similarity=0.419  Sum_probs=87.0

Q ss_pred             HHHHHhccC-CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCe-EEEEecCCCCCCC
Q 021344          157 MAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLPFA  234 (314)
Q Consensus       157 ~l~~~l~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v-~~~~~d~~~lp~~  234 (314)
                      +..+++... .+..++|+|||.|.++..    .+.+-++|.|.+...+..+++          .+. ....+|+..+|+.
T Consensus        35 ~v~qfl~~~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~----------~~~~~~~~ad~l~~p~~  100 (293)
T KOG1331|consen   35 MVRQFLDSQPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKR----------SGGDNVCRADALKLPFR  100 (293)
T ss_pred             HHHHHHhccCCcceeeecccCCcccCcC----CCcceeeecchhhhhcccccc----------CCCceeehhhhhcCCCC
Confidence            344444432 366799999999976532    255689999999998888876          334 6888999999999


Q ss_pred             CCchhhheecchhccCCCH---HHHHHHHHhhcccCcEEEEEecccC
Q 021344          235 SGFVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +.+||.+++..|+||+..-   ..+++++.++|+|||...+..+...
T Consensus       101 ~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~  147 (293)
T KOG1331|consen  101 EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE  147 (293)
T ss_pred             CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence            9999999999999999755   4789999999999999888877654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.70  E-value=3.9e-08  Score=83.01  Aligned_cols=100  Identities=21%  Similarity=0.334  Sum_probs=75.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||..||.|.|+..+++.+....|+++|+++.+++..+++++.++  ....+..+.+|..+... .+.||-|++.
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~~D~~~~~~-~~~~drvim~  176 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVINGDAREFLP-EGKFDRVIMN  176 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence            45889999999999999999996656699999999999999999999988  45779999999987654 6789988875


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEE
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFV  271 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~  271 (314)
                      ..    .....+|..+.+++|+||++-
T Consensus       177 lp----~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  177 LP----ESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             -T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred             Ch----HHHHHHHHHHHHHhcCCcEEE
Confidence            42    233468999999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.70  E-value=1.6e-07  Score=82.59  Aligned_cols=128  Identities=20%  Similarity=0.200  Sum_probs=95.6

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---cC----------------------------
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DN----------------------------  214 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---~~----------------------------  214 (314)
                      ...+||--|||.|+++..++..|.  .+.|.|.|--|+-..+-.+..   .+                            
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            456899999999999999999987  999999999886554433221   11                            


Q ss_pred             ------CCCCCCeEEEEecCCCCCCCC---CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCCCC----
Q 021344          215 ------TILTSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS----  281 (314)
Q Consensus       215 ------~~~~~~v~~~~~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~----  281 (314)
                            .....++....||+.+....+   ++||+|+..+-|.-..|.-..++.|.++|||||+++=..+..++..    
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~  213 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSI  213 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCC
Confidence                  112357888888887765444   7999999999899888999999999999999998887776654322    


Q ss_pred             -----CccchHHHHHHHHh
Q 021344          282 -----TSLTGRVLREVMLI  295 (314)
Q Consensus       282 -----~~~~~~~l~~~~~~  295 (314)
                           ..+..+.+......
T Consensus       214 ~~~~sveLs~eEi~~l~~~  232 (270)
T PF07942_consen  214 PNEMSVELSLEEIKELIEK  232 (270)
T ss_pred             CCCcccCCCHHHHHHHHHH
Confidence                 23445566665544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.67  E-value=6.9e-08  Score=84.59  Aligned_cols=109  Identities=11%  Similarity=0.135  Sum_probs=80.7

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCC-CCCCC-chhhhe
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASG-FVDAVH  242 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~~l-p~~~~-~fD~V~  242 (314)
                      +.++||-||.|.|..++.+.+..+..+++.+|+++..++.+++.+..... ....+++++.+|.... .-..+ +||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            57899999999999999999887566999999999999999998765321 0246899999998542 12233 899999


Q ss_pred             ecchhccCCC----HHHHHHHHHhhcccCcEEEEEe
Q 021344          243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       243 ~~~vl~h~~d----~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ....-...+.    ...+++.+.+.|+|||++++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            7433211111    2578999999999999999877

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.67  E-value=1.1e-07  Score=83.58  Aligned_cols=108  Identities=13%  Similarity=0.135  Sum_probs=81.7

Q ss_pred             CCeEEEEcCcccH----HHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHh-----cC------------C-----
Q 021344          167 GGLLVDVSCGSGL----FSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQ-----DN------------T-----  215 (314)
Q Consensus       167 ~~~iLDiGcG~G~----~~~~l~~~~-----~~~~v~giD~s~~~~~~a~~~~~~-----~~------------~-----  215 (314)
                      .-+|+-.||++|.    .+..+.+.+     ...+++|+|+|..+++.|+.-.-.     .+            .     
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5689999999996    444445544     257999999999999999652211     11            0     


Q ss_pred             ----CCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEe
Q 021344          216 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       216 ----~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~  274 (314)
                          .....|.|...|+...++..+.||+|+|.+||-++..+.  +++..++..|+|||+|++-.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence                012457888888876653456799999999999998764  79999999999999999865

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.66  E-value=2e-07  Score=88.70  Aligned_cols=118  Identities=17%  Similarity=0.159  Sum_probs=90.1

Q ss_pred             HHHh--ccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CC
Q 021344          159 QEYF--KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA  234 (314)
Q Consensus       159 ~~~l--~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~  234 (314)
                      ...+  ...++.+|||+++|.|.-+.+++... ....+++.|+++..+...+++++..+.   .++.+...|...+. ..
T Consensus       104 ~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~  180 (470)
T PRK11933        104 VAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAAL  180 (470)
T ss_pred             HHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhc
Confidence            3445  66789999999999999888888764 235899999999999999999998873   67888888887653 22


Q ss_pred             CCchhhhee----c--chhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccCC
Q 021344          235 SGFVDAVHA----G--AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       235 ~~~fD~V~~----~--~vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      .+.||.|+.    +  +++..-++.                ..+|..+.+.|||||+|+-+|.+-.+
T Consensus       181 ~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~  247 (470)
T PRK11933        181 PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR  247 (470)
T ss_pred             hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence            457999994    2  233332211                36799999999999999888866443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.66  E-value=6e-08  Score=81.04  Aligned_cols=126  Identities=12%  Similarity=0.176  Sum_probs=90.1

Q ss_pred             CCchHHHHHHHHHhcc--CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 021344          149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~  226 (314)
                      |..+...+.+...+..  -++.++||+-||+|.++.++..+|. .+|+.+|.+...++..+++++..+.  ..++..+..
T Consensus        23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~--~~~~~v~~~   99 (183)
T PF03602_consen   23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGL--EDKIRVIKG   99 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEES
T ss_pred             CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCC--Ccceeeecc
Confidence            5556666667766664  3788999999999999999999984 5999999999999999999998763  346899999


Q ss_pred             cCCC-CC---CCCCchhhheecchhccCCCHHHHHHHHH--hhcccCcEEEEEeccc
Q 021344          227 DVCR-LP---FASGFVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLR  277 (314)
Q Consensus       227 d~~~-lp---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~--r~LkpGG~l~i~~~~~  277 (314)
                      |+.. ++   ....+||+|++.=-...-.....++..+.  .+|+++|.+++.....
T Consensus       100 d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  100 DAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             SHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            8643 21   23678999998532221111256777776  7899999999988655

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.63  E-value=1.6e-07  Score=86.78  Aligned_cols=110  Identities=18%  Similarity=0.179  Sum_probs=87.1

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCCCchhhhe
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDAVH  242 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p~~~~~fD~V~  242 (314)
                      |++|||+=|=||.++.+++..|. .+|++||.|...++.|+++++.+++ ...++.++++|+.+.    .-...+||+|+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~-~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGL-DGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCC-CccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            88999999999999999998873 5999999999999999999999885 345689999998653    12244899999


Q ss_pred             ec---c------hhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          243 AG---A------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       243 ~~---~------vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +.   +      ...-..+-..++..+.++|+|||.+++.+....
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~  340 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH  340 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            72   1      011111234678899999999999999996653

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.62  E-value=1.5e-07  Score=86.79  Aligned_cols=111  Identities=15%  Similarity=0.184  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .+.+.+.+++... +.+|||++||+|.++..+++...  +|+|+|+++.+++.|+++++..++   .++.++.+|+.+.-
T Consensus       185 ~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~---~~v~~~~~d~~~~~  258 (353)
T TIGR02143       185 KMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNI---DNVQIIRMSAEEFT  258 (353)
T ss_pred             HHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCC---CcEEEEEcCHHHHH
Confidence            3445555555432 34799999999999999988764  999999999999999999988763   57999999986521


Q ss_pred             CC----------C------CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 FA----------S------GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ~~----------~------~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      -.          .      ..||+|+..=-  .-.-...+++.+.   +|+++++++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC  311 (353)
T TIGR02143       259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISC  311 (353)
T ss_pred             HHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEc
Confidence            10          1      13788886311  0000124445443   4788888877

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.61  E-value=1.7e-07  Score=86.87  Aligned_cols=112  Identities=14%  Similarity=0.196  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      +..++.+.+++... +.++||++||+|.++..+++...  +|+|+|.++.+++.++++++..+.   .++.++.+|+.+.
T Consensus       193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~---~~v~~~~~d~~~~  266 (362)
T PRK05031        193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGI---DNVQIIRMSAEEF  266 (362)
T ss_pred             HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCC---CcEEEEECCHHHH
Confidence            34455555655432 35799999999999998888764  999999999999999999988763   5899999998652


Q ss_pred             -C-CC--------------CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          232 -P-FA--------------SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 -p-~~--------------~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                       + +.              ..+||+|+..=--  -.-...+++.+.   +|+++++++.
T Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~---~~~~ivyvSC  320 (362)
T PRK05031        267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQ---AYERILYISC  320 (362)
T ss_pred             HHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHH---ccCCEEEEEe
Confidence             1 10              1258999873110  000134445544   3788888877

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.60  E-value=4e-07  Score=78.55  Aligned_cols=90  Identities=17%  Similarity=0.213  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCe-EEEEecCCCCC-----CCCCch
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLP-----FASGFV  238 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v-~~~~~d~~~lp-----~~~~~f  238 (314)
                      .++.++||+|||+|.++..+++.+ ..+|+|+|+++.++....+   .     ..++ .+...|+....     ..-..+
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~---~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~  144 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLR---Q-----DERVKVLERTNIRYVTPADIFPDFATF  144 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHh---c-----CCCeeEeecCCcccCCHhHcCCCceee
Confidence            367789999999999999999986 3589999999987765222   1     1232 23333444222     112357


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEE
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i  272 (314)
                      |+++++..        ..+..+.+.|+| |.+++
T Consensus       145 DvsfiS~~--------~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       145 DVSFISLI--------SILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eEEEeehH--------hHHHHHHHHhCc-CeEEE
Confidence            76666543        348899999999 76654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.60  E-value=2.8e-07  Score=83.32  Aligned_cols=80  Identities=14%  Similarity=0.109  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCCeEEEE-ecCCCCC----CCCCchh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR-ADVCRLP----FASGFVD  239 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~-~d~~~lp----~~~~~fD  239 (314)
                      .+.++||||||+|.....++.+.+..+++|+|+++.+++.|+++++.. +  ...++.+.. .|...+.    ...+.||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIHKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccccCCceE
Confidence            467899999999988777776655679999999999999999999987 5  345777764 3332211    2356899


Q ss_pred             hheecchh
Q 021344          240 AVHAGAAL  247 (314)
Q Consensus       240 ~V~~~~vl  247 (314)
                      +|+|+=-+
T Consensus       192 livcNPPf  199 (321)
T PRK11727        192 ATLCNPPF  199 (321)
T ss_pred             EEEeCCCC
Confidence            99997443

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=7e-08  Score=75.40  Aligned_cols=86  Identities=19%  Similarity=0.367  Sum_probs=70.0

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+....-+|++++|+|||.|-+........ ...|+|+|+++.+++.+++++++..    .++.++++|+.++.+..+
T Consensus        39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqcdildle~~~g  113 (185)
T KOG3420|consen   39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQCDILDLELKGG  113 (185)
T ss_pred             HHHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHhh----hhhheeeeeccchhccCC
Confidence            33444455578999999999999986665544 5689999999999999999988865    678999999999888888


Q ss_pred             chhhheecchh
Q 021344          237 FVDAVHAGAAL  247 (314)
Q Consensus       237 ~fD~V~~~~vl  247 (314)
                      .||.++.+--+
T Consensus       114 ~fDtaviNppF  124 (185)
T KOG3420|consen  114 IFDTAVINPPF  124 (185)
T ss_pred             eEeeEEecCCC
Confidence            99999886443

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.58  E-value=4.2e-08  Score=82.69  Aligned_cols=113  Identities=19%  Similarity=0.214  Sum_probs=83.7

Q ss_pred             HHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCc
Q 021344          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGF  237 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~  237 (314)
                      +..+.+.+.+|||...|-|+++....++|. ..|+.+|.+++.++.|.-+-=..++ ...+++++.+|+.+.  .|.|++
T Consensus       128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~D~s  205 (287)
T COG2521         128 ELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFDDES  205 (287)
T ss_pred             heeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCCccc
Confidence            345566799999999999999999999984 5899999999998887653222222 224689999998663  477999


Q ss_pred             hhhheec---chhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          238 VDAVHAG---AALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       238 fD~V~~~---~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ||+|+..   +.+.----...+.++++|+|||||.++=.+
T Consensus       206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv  245 (287)
T COG2521         206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV  245 (287)
T ss_pred             cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence            9999852   111100012578999999999999997655

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.57  E-value=5.5e-07  Score=76.11  Aligned_cols=124  Identities=18%  Similarity=0.195  Sum_probs=95.4

Q ss_pred             CCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 021344          148 FPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (314)
Q Consensus       148 ~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~  226 (314)
                      +....+...++..++..-..+++||||.=+|+.+..++...+ +.+|+++|++++..+.+.+..+..+  ...+|+++++
T Consensus        55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g  132 (237)
T KOG1663|consen   55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEG  132 (237)
T ss_pred             eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeec
Confidence            344555566666666666778999999999998887777643 5699999999999999999999888  5789999999


Q ss_pred             cCCC-C-----CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          227 DVCR-L-----PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       227 d~~~-l-----p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++.+ +     ....++||++|..+--.   +-...+.++.++||+||++++-...
T Consensus       133 ~a~esLd~l~~~~~~~tfDfaFvDadK~---nY~~y~e~~l~Llr~GGvi~~DNvl  185 (237)
T KOG1663|consen  133 PALESLDELLADGESGTFDFAFVDADKD---NYSNYYERLLRLLRVGGVIVVDNVL  185 (237)
T ss_pred             chhhhHHHHHhcCCCCceeEEEEccchH---HHHHHHHHHHhhcccccEEEEeccc
Confidence            9854 1     13467899999643211   2237789999999999999985533

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=4.7e-07  Score=73.62  Aligned_cols=110  Identities=18%  Similarity=0.275  Sum_probs=82.6

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ......+||||||+|..+..+++. +++..+.++|+++.+++...+.++.++    .++..+++|+..- +..++.|+++
T Consensus        41 ~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~-l~~~~VDvLv  115 (209)
T KOG3191|consen   41 GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSG-LRNESVDVLV  115 (209)
T ss_pred             hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhh-hccCCccEEE
Confidence            334678999999999998888876 567789999999999999888888766    6788999998652 2347888887


Q ss_pred             ecchhc-----cC------------CC----HHHHHHHHHhhcccCcEEEEEecccC
Q 021344          243 AGAALH-----CW------------PS----PSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       243 ~~~vl~-----h~------------~d----~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .+--..     -+            .|    .++++..+-.+|.|.|++++....++
T Consensus       116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen  116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN  172 (209)
T ss_pred             ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence            642110     01            01    24678888889999999999886554

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.56  E-value=2.7e-07  Score=83.85  Aligned_cols=130  Identities=13%  Similarity=0.130  Sum_probs=88.4

Q ss_pred             CCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 021344          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (314)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-------~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~  218 (314)
                      +.++++....+++.+.+...++.+|+|.+||+|.++..+.+.       ....+++|+|+++.++..++-++.-.+. ..
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~-~~  104 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI-DN  104 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-HC
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-cc
Confidence            346788999999999998888889999999999999888763       2455899999999999998876655442 12


Q ss_pred             CCeEEEEecCCCCCCC--CCchhhheecchh--c-c-----CCC-------------HHHHHHHHHhhcccCcEEEEEec
Q 021344          219 SNLALVRADVCRLPFA--SGFVDAVHAGAAL--H-C-----WPS-------------PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       219 ~~v~~~~~d~~~lp~~--~~~fD~V~~~~vl--~-h-----~~d-------------~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .+..+..+|....+..  .+.||+|+++--+  . +     ..+             ...++..+.+.||+||++.+..+
T Consensus       105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            3456888887655433  4689999984221  1 0     000             12588999999999999888775


Q ss_pred             c
Q 021344          276 L  276 (314)
Q Consensus       276 ~  276 (314)
                      .
T Consensus       185 ~  185 (311)
T PF02384_consen  185 N  185 (311)
T ss_dssp             H
T ss_pred             c
Confidence            4

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.55  E-value=9.6e-07  Score=80.04  Aligned_cols=130  Identities=19%  Similarity=0.267  Sum_probs=101.7

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      +...+.+....  |.+|||.=+|.|.|+..+++.+.- +|+++|++|.+++..+++++.++.  ...+..+++|....+.
T Consensus       178 ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v--~~~v~~i~gD~rev~~  252 (341)
T COG2520         178 ERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKV--EGRVEPILGDAREVAP  252 (341)
T ss_pred             HHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCc--cceeeEEeccHHHhhh
Confidence            33455555544  889999999999999999999863 499999999999999999999883  4559999999988775


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHH
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREV  292 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~  292 (314)
                      .-+.||-|++...    .+...++....+.+++||++...+.........+..+.++..
T Consensus       253 ~~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~  307 (341)
T COG2520         253 ELGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSA  307 (341)
T ss_pred             ccccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHH
Confidence            5578999998653    455678999999999999999988776544333333444443

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=1.4e-06  Score=75.34  Aligned_cols=114  Identities=21%  Similarity=0.404  Sum_probs=95.2

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .+.++..++...+|.+||+-|.|+|.++.++++. ++..+++.+|+.+...+.|++-+++.+  ..+++++..-|+...-
T Consensus        93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~G  170 (314)
T KOG2915|consen   93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSG  170 (314)
T ss_pred             cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCC
Confidence            3557888999999999999999999999999887 566799999999999999999999998  4689999999997754


Q ss_pred             CC--CCchhhheecchhccCCCHHHHHHHHHhhcccCc-EEEEEe
Q 021344          233 FA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTT  274 (314)
Q Consensus       233 ~~--~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG-~l~i~~  274 (314)
                      |.  +..+|.|+..     ++.|..++..+.++||.+| ++.-.+
T Consensus       171 F~~ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFS  210 (314)
T KOG2915|consen  171 FLIKSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFS  210 (314)
T ss_pred             ccccccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEecc
Confidence            43  4567877764     6889889999999999876 444433

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.54  E-value=5.3e-07  Score=77.84  Aligned_cols=86  Identities=15%  Similarity=0.228  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ..++.+.+..+.++++.|||||.|||.++..+.+.+.  +|+++|+++.++....++.+...  .....+++.+|+...+
T Consensus        45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp--~~~kLqV~~gD~lK~d  120 (315)
T KOG0820|consen   45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTP--KSGKLQVLHGDFLKTD  120 (315)
T ss_pred             HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCC--ccceeeEEecccccCC
Confidence            3455666677788899999999999999999999987  99999999999999999887654  4578999999998876


Q ss_pred             CCCCchhhheec
Q 021344          233 FASGFVDAVHAG  244 (314)
Q Consensus       233 ~~~~~fD~V~~~  244 (314)
                      ++  .||+++++
T Consensus       121 ~P--~fd~cVsN  130 (315)
T KOG0820|consen  121 LP--RFDGCVSN  130 (315)
T ss_pred             Cc--ccceeecc
Confidence            54  68888873

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=6.7e-07  Score=78.00  Aligned_cols=86  Identities=15%  Similarity=0.210  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ...++.+.+.....++..|||||+|.|.++..|.+.+.  +|+++|+++.++...++....     ..+++++.+|+.+.
T Consensus        16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~   88 (259)
T COG0030          16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKF   88 (259)
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcC
Confidence            34566788888888889999999999999999999987  899999999999999997652     37899999999988


Q ss_pred             CCCCC-chhhheec
Q 021344          232 PFASG-FVDAVHAG  244 (314)
Q Consensus       232 p~~~~-~fD~V~~~  244 (314)
                      .++.- .++.|+++
T Consensus        89 d~~~l~~~~~vVaN  102 (259)
T COG0030          89 DFPSLAQPYKVVAN  102 (259)
T ss_pred             cchhhcCCCEEEEc
Confidence            77642 46666654

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.51  E-value=5.7e-07  Score=79.71  Aligned_cols=102  Identities=20%  Similarity=0.320  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      -.++.|||+|||+|-+....+..|. .+|+++|.|+ |.+.|++.++.+.  ..++|.++.+-++++.++ ++.|+|++-
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N~--~~~rItVI~GKiEdieLP-Ek~DviISE  250 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASNN--LADRITVIPGKIEDIELP-EKVDVIISE  250 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcCC--ccceEEEccCccccccCc-hhccEEEec
Confidence            3577899999999999999998884 5899999865 8899999998886  578999999999998775 579999873


Q ss_pred             chhccCC-CH--HHHHHHHHhhcccCcEEEE
Q 021344          245 AALHCWP-SP--SNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       245 ~vl~h~~-d~--~~~l~~i~r~LkpGG~l~i  272 (314)
                      - +.++- +.  ....-..++.|||.|..+=
T Consensus       251 P-MG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  251 P-MGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             c-chhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence            1 11111 11  1223345699999998754

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.50  E-value=1.7e-06  Score=68.89  Aligned_cols=104  Identities=29%  Similarity=0.429  Sum_probs=75.4

Q ss_pred             EEEEcCcccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC--CCCCC-Cchhhheecc
Q 021344          170 LVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS-GFVDAVHAGA  245 (314)
Q Consensus       170 iLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~--lp~~~-~~fD~V~~~~  245 (314)
                      ++|+|||+|... .+...... ..++|+|+++.++..++..... .  ....+.+..+|...  +++.. ..||++ ...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A--GLGLVDFVVADALGGVLPFEDSASFDLV-ISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c--CCCceEEEEeccccCCCCCCCCCceeEE-eee
Confidence            999999999965 33333222 3799999999998885554432 2  01116888888876  77776 489999 554


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ...|..++...+.++.+.|+|+|.+++......
T Consensus       127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            444444488999999999999999999887653

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=5.1e-07  Score=85.02  Aligned_cols=110  Identities=18%  Similarity=0.321  Sum_probs=89.6

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .+.+.+.+.+++...++.++||+=||.|.|+..+++...  +|+|+|+++.+++.|+++++.+++   .|+.|..+++++
T Consensus       278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i---~N~~f~~~~ae~  352 (432)
T COG2265         278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGI---DNVEFIAGDAEE  352 (432)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCC---CcEEEEeCCHHH
Confidence            355667777888887888999999999999999998766  999999999999999999999884   679999999987


Q ss_pred             CCCC---CCchhhheecchhccCCCH------HHHHHHHHhhcccCcEEEEEe
Q 021344          231 LPFA---SGFVDAVHAGAALHCWPSP------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 lp~~---~~~fD~V~~~~vl~h~~d~------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ....   ...+|+|+.        ||      ..+++.+.+ ++|-.+++++.
T Consensus       353 ~~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC  396 (432)
T COG2265         353 FTPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC  396 (432)
T ss_pred             HhhhccccCCCCEEEE--------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence            6432   347899986        33      255665555 68888888877

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.49  E-value=2.5e-07  Score=77.82  Aligned_cols=90  Identities=18%  Similarity=0.253  Sum_probs=71.4

Q ss_pred             CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC---CCchhhheec
Q 021344          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVHAG  244 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~---~~~fD~V~~~  244 (314)
                      .++|||||=+......-.  + ...|+.||+++                  ..-.+.+.|+.+.|.+   +++||+|.++
T Consensus        53 lrlLEVGals~~N~~s~~--~-~fdvt~IDLns------------------~~~~I~qqDFm~rplp~~~~e~FdvIs~S  111 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTS--G-WFDVTRIDLNS------------------QHPGILQQDFMERPLPKNESEKFDVISLS  111 (219)
T ss_pred             ceEEeecccCCCCccccc--C-ceeeEEeecCC------------------CCCCceeeccccCCCCCCcccceeEEEEE
Confidence            589999997655443322  2 23699999976                  2345678899887764   6789999999


Q ss_pred             chhccCCCHH---HHHHHHHhhcccCcE-----EEEEecccC
Q 021344          245 AALHCWPSPS---NAVAEISRILRSGGV-----FVGTTFLRY  278 (314)
Q Consensus       245 ~vl~h~~d~~---~~l~~i~r~LkpGG~-----l~i~~~~~~  278 (314)
                      .||+++++|.   ..++.+.+.|+|+|.     |+++.+..-
T Consensus       112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C  153 (219)
T PF11968_consen  112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC  153 (219)
T ss_pred             EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence            9999999996   689999999999999     999887663

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.46  E-value=2.7e-06  Score=70.40  Aligned_cols=126  Identities=17%  Similarity=0.156  Sum_probs=94.2

Q ss_pred             CCchHHHHHHHHHhcc--CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 021344          149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~  226 (314)
                      |+.+...+.+..++..  -.+.++||+=+|+|.++.+...+|. .+++.+|.+..+....+++++..+  ...+..++..
T Consensus        24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~  100 (187)
T COG0742          24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG--LEGEARVLRN  100 (187)
T ss_pred             CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC--CccceEEEee
Confidence            5556667777777765  5789999999999999999999984 599999999999999999998866  3578899999


Q ss_pred             cCCCC-CCCCC--chhhheecchhc-cCCCHHHHHHH--HHhhcccCcEEEEEeccc
Q 021344          227 DVCRL-PFASG--FVDAVHAGAALH-CWPSPSNAVAE--ISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       227 d~~~l-p~~~~--~fD~V~~~~vl~-h~~d~~~~l~~--i~r~LkpGG~l~i~~~~~  277 (314)
                      |+... +....  .||+|+..=-++ -+.+....+..  -...|+|+|.+++.....
T Consensus       101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            98732 11222  499999854433 12222333333  446799999999988544

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.44  E-value=5.1e-07  Score=80.70  Aligned_cols=85  Identities=21%  Similarity=0.293  Sum_probs=68.2

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-  232 (314)
                      .+.+.+.+...+++.+||.+||.|..+..+++..+ ..+|+|+|.++.+++.+++++.. .    .++.++++|+.++. 
T Consensus         8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~----~ri~~i~~~f~~l~~   82 (296)
T PRK00050          8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F----GRFTLVHGNFSNLKE   82 (296)
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C----CcEEEEeCCHHHHHH
Confidence            34556667767788999999999999999999864 57999999999999999998754 2    68999999987653 


Q ss_pred             -CCCC--chhhheec
Q 021344          233 -FASG--FVDAVHAG  244 (314)
Q Consensus       233 -~~~~--~fD~V~~~  244 (314)
                       ..++  ++|.|++.
T Consensus        83 ~l~~~~~~vDgIl~D   97 (296)
T PRK00050         83 VLAEGLGKVDGILLD   97 (296)
T ss_pred             HHHcCCCccCEEEEC
Confidence             1122  68988874

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.44  E-value=1.1e-06  Score=78.25  Aligned_cols=110  Identities=17%  Similarity=0.211  Sum_probs=79.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-C--CCCCchhhhe
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVH  242 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p--~~~~~fD~V~  242 (314)
                      .+++|||+=|=+|.|+.+++..| ..+|+.||.|..+++.++++++.++. ...+++++..|+.+. .  -..++||+|+
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~-~~~~~~~~~~Dvf~~l~~~~~~~~fD~II  200 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGL-DLDRHRFIQGDVFKFLKRLKKGGRFDLII  200 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence            47899999999999999988776 35899999999999999999998874 236899999998652 1  1246899999


Q ss_pred             ec---ch---hccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          243 AG---AA---LHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       243 ~~---~v---l~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +.   +.   ..-..+-..++..+.++|+|||.+++.+.+.
T Consensus       201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            72   11   0001133467888999999999998888554

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=3.7e-06  Score=77.66  Aligned_cols=129  Identities=20%  Similarity=0.228  Sum_probs=98.3

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .........+.+.++.+|||..++.|.=+.+++....+  ..|+++|.++.-++..+++++..|.   .++..+..|...
T Consensus       143 ~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~~~  219 (355)
T COG0144         143 EASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDARR  219 (355)
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEeccccc
Confidence            33445556788889999999999999988888887643  3579999999999999999999874   668888888765


Q ss_pred             CC---CCCCchhhhee------cchhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccCCCCCcc
Q 021344          231 LP---FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSL  284 (314)
Q Consensus       231 lp---~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~  284 (314)
                      .+   ...++||.|+.      .+++..=++.                .++|+...++|||||.|+.+|.+-.+..+..
T Consensus       220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~  298 (355)
T COG0144         220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEE  298 (355)
T ss_pred             ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHH
Confidence            54   22235999986      3445332221                2689999999999999999998876655543

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.40  E-value=1.7e-06  Score=73.51  Aligned_cols=101  Identities=17%  Similarity=0.145  Sum_probs=82.6

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v  246 (314)
                      +.+++|||+|.|.=+..++-..++.+++-+|....-+...++..++-++   .|++++++.+++..-....||+|++..+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv~i~~~RaE~~~~~~~~~D~vtsRAv  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL---ENVEIVHGRAEEFGQEKKQYDVVTSRAV  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC---CCeEEehhhHhhcccccccCcEEEeehc
Confidence            5799999999999999988778888999999999988888888877764   7899999999887532212999999775


Q ss_pred             hccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          247 LHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       247 l~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                          .+...++.-+...+|+||.++..-
T Consensus       145 ----a~L~~l~e~~~pllk~~g~~~~~k  168 (215)
T COG0357         145 ----ASLNVLLELCLPLLKVGGGFLAYK  168 (215)
T ss_pred             ----cchHHHHHHHHHhcccCCcchhhh
Confidence                455666777888999999876544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.38  E-value=3.3e-06  Score=75.24  Aligned_cols=114  Identities=18%  Similarity=0.116  Sum_probs=74.6

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC--CCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPF  233 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~--~lp~  233 (314)
                      .+...++.-.+.+|||+|+|.|..+..+.+..+ ..+++++|.|+.+++.++..+.....  ....... .+..  ..++
T Consensus        24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~~-~~~~~~~~~~  100 (274)
T PF09243_consen   24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEWR-RVLYRDFLPF  100 (274)
T ss_pred             HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchhh-hhhhcccccC
Confidence            444444445677999999999988777766533 34799999999999999997765431  1111111 1111  1222


Q ss_pred             CCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .  ..|+|++.++|..+++.  ..+++.+.+.+++  .|+++++..
T Consensus       101 ~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt  142 (274)
T PF09243_consen  101 P--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT  142 (274)
T ss_pred             C--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence            2  34999999999999882  2455555555544  888888654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.37  E-value=1.3e-06  Score=74.25  Aligned_cols=116  Identities=15%  Similarity=0.187  Sum_probs=69.1

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-------cCCCCCCCeEEEEecC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTILTSNLALVRADV  228 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~~~~~~v~~~~~d~  228 (314)
                      ..+.+.++..++..++|+|||.|....+++......+++|||+.+...+.|+...+.       .+. ...++++..+|+
T Consensus        32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~l~~gdf  110 (205)
T PF08123_consen   32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVELIHGDF  110 (205)
T ss_dssp             HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-T
T ss_pred             HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccceeeccCc
Confidence            345556777788999999999999888777665455799999999888777653322       221 246788899998


Q ss_pred             CCCCCCC---CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344          229 CRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       229 ~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      .+.++..   ...|+|+++...- -++....|.++...||+|.+++..
T Consensus       111 l~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  111 LDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             TTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             cccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEEC
Confidence            7644211   2468999876532 123345677778889998887643

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.36  E-value=9.8e-06  Score=73.42  Aligned_cols=110  Identities=15%  Similarity=0.086  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----CCC--CC
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPF--AS  235 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----lp~--~~  235 (314)
                      ++..++|+|||+|.=+..|.+.    +....++++|+|..+++.+.+++..... ....+.-+++|+.+    ++-  ..
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence            4668999999999865554443    3345799999999999999999882221 12344558898855    221  12


Q ss_pred             Cchhhhee-cchhccCCCHH--HHHHHHHh-hcccCcEEEEEecc
Q 021344          236 GFVDAVHA-GAALHCWPSPS--NAVAEISR-ILRSGGVFVGTTFL  276 (314)
Q Consensus       236 ~~fD~V~~-~~vl~h~~d~~--~~l~~i~r-~LkpGG~l~i~~~~  276 (314)
                      ....+++. ..+|.+++..+  .+|+++++ .|+|||.+++..-.
T Consensus       155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~  199 (319)
T TIGR03439       155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG  199 (319)
T ss_pred             CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence            23555554 45788887654  78999999 99999998885533

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.35  E-value=4.7e-07  Score=73.64  Aligned_cols=72  Identities=22%  Similarity=0.308  Sum_probs=55.3

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCc-hhhheec
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF-VDAVHAG  244 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~-fD~V~~~  244 (314)
                      .|+|+.||.|..+.++++.+.  +|+++|+++..++.|+.+++..|  ...+++++++|+.++.  +.... ||+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            699999999999999999976  99999999999999999999987  4679999999987642  22222 8999973

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.35  E-value=3.1e-06  Score=70.06  Aligned_cols=103  Identities=21%  Similarity=0.399  Sum_probs=76.0

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCCCeEEEEecCCC-CC--CCCCchh
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCR-LP--FASGFVD  239 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----~~~~~v~~~~~d~~~-lp--~~~~~fD  239 (314)
                      ...+.|||||.|.++..|+..+|+..++|+|+-....++.++++...+.    +...|+.+...+... +|  |..++.+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            3569999999999999999999999999999999999998888877431    023566777766654 23  2233333


Q ss_pred             hheecchhccCCCH-------------HHHHHHHHhhcccCcEEEEEe
Q 021344          240 AVHAGAALHCWPSP-------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       240 ~V~~~~vl~h~~d~-------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      -.     +..++||             ..++.+..-+|++||.++..+
T Consensus       141 km-----ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  141 KM-----FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             cc-----eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            22     2334554             257899999999999999887

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.33  E-value=4e-06  Score=78.35  Aligned_cols=103  Identities=22%  Similarity=0.405  Sum_probs=88.2

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhc
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH  248 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (314)
                      ++|-+|||.-.+...+.+.| ...++-+|+|+-.++....+....    ..-..+...|...+.|++++||+|+..+.++
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD  125 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD  125 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence            89999999999999999887 468999999999988887765432    3678999999999999999999999999988


Q ss_pred             cCCCH----------HHHHHHHHhhcccCcEEEEEecc
Q 021344          249 CWPSP----------SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       249 h~~d~----------~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++-.+          ...+.+++|+|++||+++..+..
T Consensus       126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~  163 (482)
T KOG2352|consen  126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV  163 (482)
T ss_pred             cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence            87422          24588999999999999888873

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.32  E-value=2.8e-07  Score=76.38  Aligned_cols=98  Identities=17%  Similarity=0.151  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      .+.++||+|.|.|..+..++....  +|++.|.|..|....+++          +..++..  .+..-.+-+||+|.|.+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynVl~~--~ew~~t~~k~dli~clN  177 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNVLTE--IEWLQTDVKLDLILCLN  177 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCceeee--hhhhhcCceeehHHHHH
Confidence            457899999999999999988865  899999999998887762          2222221  11111234699999999


Q ss_pred             hhccCCCHHHHHHHHHhhccc-CcEEEEEeccc
Q 021344          246 ALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR  277 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~Lkp-GG~l~i~~~~~  277 (314)
                      +|..-.+|-++|+.|+.+|+| +|++++....+
T Consensus       178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP  210 (288)
T KOG3987|consen  178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLP  210 (288)
T ss_pred             HHHhhcChHHHHHHHHHHhccCCCcEEEEEEec
Confidence            999889999999999999999 89988866544

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.27  E-value=6.8e-06  Score=80.09  Aligned_cols=95  Identities=13%  Similarity=0.182  Sum_probs=65.3

Q ss_pred             CCCCchHHHHHHHHHhccC-------CCCeEEEEcCcccHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHH
Q 021344          147 GFPGPDEEFKMAQEYFKSA-------QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIK  211 (314)
Q Consensus       147 ~~~~~~~~~~~l~~~l~~~-------~~~~iLDiGcG~G~~~~~l~~~~~--------~~~v~giD~s~~~~~~a~~~~~  211 (314)
                      .++++...++.+.+.+...       ...+|||.|||+|.++..+.+...        ...++|+|+++..+..++.++.
T Consensus         5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~   84 (524)
T TIGR02987         5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG   84 (524)
T ss_pred             ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence            3566777777777655321       345899999999999988877542        2578999999999999999877


Q ss_pred             hcCCCCCCCeEEEEecCCCCC-----CCCCchhhheec
Q 021344          212 QDNTILTSNLALVRADVCRLP-----FASGFVDAVHAG  244 (314)
Q Consensus       212 ~~~~~~~~~v~~~~~d~~~lp-----~~~~~fD~V~~~  244 (314)
                      ..+   ...+.+...|.....     -..+.||+|+.+
T Consensus        85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgN  119 (524)
T TIGR02987        85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITN  119 (524)
T ss_pred             hcC---CCCceeeecccccccccccccccCcccEEEeC
Confidence            653   123455555533211     112579999984

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.26  E-value=6.5e-06  Score=76.31  Aligned_cols=100  Identities=13%  Similarity=0.196  Sum_probs=81.8

Q ss_pred             CeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCCchhhheecc
Q 021344          168 GLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGA  245 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~~fD~V~~~~  245 (314)
                      .+|||+.||+|..+..+++.. ...+|+++|+++.+++.++++++..+.   .++.++++|+..+- ...++||+|...-
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~---~~~~v~~~Da~~~l~~~~~~fDvIdlDP  122 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV---ENIEVPNEDAANVLRYRNRKFHVIDIDP  122 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence            589999999999999999873 235899999999999999999988763   46889999986542 1235799998743


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                          +..+..+++.+.+.+++||+++++.
T Consensus       123 ----fGs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       123 ----FGTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             ----CCCcHHHHHHHHHhcccCCEEEEEe
Confidence                2456789999999999999999974

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.20  E-value=1.4e-05  Score=80.33  Aligned_cols=123  Identities=15%  Similarity=0.091  Sum_probs=86.4

Q ss_pred             chHHHHHHHHHhcc-CCCCeEEEEcCcccHHHHHHHHhCC----------------------------------------
Q 021344          151 PDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGT----------------------------------------  189 (314)
Q Consensus       151 ~~~~~~~l~~~l~~-~~~~~iLDiGcG~G~~~~~l~~~~~----------------------------------------  189 (314)
                      .+..+..+...... .++..++|.+||+|.++.+.+....                                        
T Consensus       174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~  253 (702)
T PRK11783        174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA  253 (702)
T ss_pred             cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            34555555555544 4578999999999999988865310                                        


Q ss_pred             --CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC--CCchhhheecchhc-cCC---CHHHHHHHHH
Q 021344          190 --YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAALH-CWP---SPSNAVAEIS  261 (314)
Q Consensus       190 --~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~--~~~fD~V~~~~vl~-h~~---d~~~~l~~i~  261 (314)
                        ..+++|+|+++.+++.|++++...+  ....+.+.++|+.+++.+  .++||+|+++--.. .+.   +...+.+++.
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg  331 (702)
T PRK11783        254 ELPSKFYGSDIDPRVIQAARKNARRAG--VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG  331 (702)
T ss_pred             ccCceEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence              1269999999999999999999987  346799999999887643  35799999863221 122   2234444444


Q ss_pred             hhcc---cCcEEEEEec
Q 021344          262 RILR---SGGVFVGTTF  275 (314)
Q Consensus       262 r~Lk---pGG~l~i~~~  275 (314)
                      +.+|   +|+.+++.+.
T Consensus       332 ~~lk~~~~g~~~~llt~  348 (702)
T PRK11783        332 RRLKQQFGGWNAALFSS  348 (702)
T ss_pred             HHHHHhCCCCeEEEEeC
Confidence            4444   8988888774

>PRK11827 hypothetical protein; Provisional

Probab=98.19  E-value=6.4e-07  Score=59.54  Aligned_cols=45  Identities=16%  Similarity=0.383  Sum_probs=37.4

Q ss_pred             CCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (314)
                      +++++||.|+++|.....         .+.+.|..|+..|++++|++.++.+..
T Consensus         6 LeILaCP~ckg~L~~~~~---------~~~Lic~~~~laYPI~dgIPVlL~deA   50 (60)
T PRK11827          6 LEIIACPVCNGKLWYNQE---------KQELICKLDNLAFPLRDGIPVLLETEA   50 (60)
T ss_pred             HhheECCCCCCcCeEcCC---------CCeEECCccCeeccccCCccccCHHHh
Confidence            578999999999875332         257999999999999999999987644

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.17  E-value=9.2e-06  Score=67.92  Aligned_cols=104  Identities=13%  Similarity=0.225  Sum_probs=83.9

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhhe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~  242 (314)
                      .++++||.||-|.|-....+.++-+. +-+.+|..++.++..++..-.    ...+|..+.+-.++.  .++++.||.|+
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI~  174 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGIY  174 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCcceeE
Confidence            57899999999999988888877653 778899999998887774333    347888888877653  25688999999


Q ss_pred             ecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      -.---+|..|...+.+.+.|+|||+|++-..
T Consensus       175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             eechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            7666688888889999999999999998653

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=1.2e-05  Score=67.52  Aligned_cols=106  Identities=22%  Similarity=0.237  Sum_probs=74.7

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----  232 (314)
                      ..++--..++..|+|+|+..|.+++.+++.. ....|+|+|+.+-.              ...++.++++|+..-+    
T Consensus        37 ~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~  102 (205)
T COG0293          37 NEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEK  102 (205)
T ss_pred             HHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHH
Confidence            3333334568899999999999999998884 34469999997732              2367999999997643    


Q ss_pred             ----CCCCchhhheecchh--------ccCCC---HHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 ----FASGFVDAVHAGAAL--------HCWPS---PSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 ----~~~~~fD~V~~~~vl--------~h~~d---~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                          +....+|+|++...=        +|...   -..++.-+..+|+|||.+++-.+..
T Consensus       103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg  162 (205)
T COG0293         103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG  162 (205)
T ss_pred             HHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence                334457999974331        22111   1245677778999999999988654

>COG2835 Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=1.1e-06  Score=57.82  Aligned_cols=45  Identities=22%  Similarity=0.566  Sum_probs=38.5

Q ss_pred             CCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (314)
                      .++++||.|+++|......         +.+.|+.|+..|++++|++.+++...
T Consensus         6 LeiLaCP~~kg~L~~~~~~---------~~L~c~~~~~aYpI~dGIPvlL~~ea   50 (60)
T COG2835           6 LEILACPVCKGPLVYDEEK---------QELICPRCKLAYPIRDGIPVLLPDEA   50 (60)
T ss_pred             heeeeccCcCCcceEeccC---------CEEEecccCceeecccCccccCchhh
Confidence            5789999999998765532         68999999999999999999997644

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.16  E-value=1.3e-06  Score=72.94  Aligned_cols=99  Identities=20%  Similarity=0.267  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--------CC--
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA--  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--------~~--  234 (314)
                      ++.++||+||++|.|+..+.+++ ...+|+|+|+.+..              ...++..+++|+....        +.  
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------------PLQNVSFIQGDITNPENIKDIRKLLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------------S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------------cccceeeeecccchhhHHHhhhhhcccc
Confidence            45899999999999999999987 34599999998750              1245666677664311        11  


Q ss_pred             CCchhhheecchhccCCCH-----------HHHHHHHHhhcccCcEEEEEecccC
Q 021344          235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .+.||+|++..+.....+.           ...+.-+.+.|+|||.+++-.+...
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~  143 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP  143 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence            2589999997743333221           1345556678999999999887643

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.14  E-value=3e-05  Score=71.00  Aligned_cols=121  Identities=15%  Similarity=0.062  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC--------------------------------C-------e
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------S-------G  192 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~--------------------------------~-------~  192 (314)
                      +.+...|.......++..++|--||+|.++...+..+.+                                .       .
T Consensus       177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~  256 (381)
T COG0116         177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI  256 (381)
T ss_pred             HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence            444566666666666778999999999999999887642                                1       2


Q ss_pred             EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchh-ccCCC---HH----HHHHHHHhhc
Q 021344          193 VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPS---PS----NAVAEISRIL  264 (314)
Q Consensus       193 v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl-~h~~d---~~----~~l~~i~r~L  264 (314)
                      ++|+|+++.+++.|+.+....|  ..+.|.|.++|+..++-+-+.+|+|+++--- +-+.+   ..    .+.+.+++.+
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~  334 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAG--VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL  334 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcC--CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence            7799999999999999999998  5788999999999886443689999995211 11112   22    3444555666


Q ss_pred             ccCcEEEEEe
Q 021344          265 RSGGVFVGTT  274 (314)
Q Consensus       265 kpGG~l~i~~  274 (314)
                      +--+.+++++
T Consensus       335 ~~ws~~v~tt  344 (381)
T COG0116         335 AGWSRYVFTT  344 (381)
T ss_pred             cCCceEEEEc
Confidence            6667888877

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.14  E-value=8.2e-06  Score=67.34  Aligned_cols=116  Identities=17%  Similarity=0.197  Sum_probs=86.7

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+...-..-.+++|||+|+|+|......++.|. ..|+..|+.+...+..+-+.+.++    ..+.+...|.-.   
T Consensus        67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g---  138 (218)
T COG3897          67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG---  138 (218)
T ss_pred             HHHHHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---
Confidence            344444444445789999999999999999999884 589999999999888888888776    788888888765   


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .+..||+|+...++..-+...+++.-..++...|-.+++-++.+
T Consensus       139 ~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         139 SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence            35679999999887765556677774444444555566666544

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.13  E-value=2.9e-05  Score=62.15  Aligned_cols=103  Identities=19%  Similarity=0.214  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCcccHHHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAK-----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~-----~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD  239 (314)
                      .+...|+|+|||.|+++..++.     . ++.+|+|+|.++..++.++++.+..+.....++.+..++...... ....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  101 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD  101 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence            5678999999999999999998     4 567999999999999999998877542122456666666544322 34466


Q ss_pred             hheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +++.-|.-..+.  ..+++...+   ++-..++..
T Consensus       102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~v  131 (141)
T PF13679_consen  102 ILVGLHACGDLS--DRALRLFIR---PNARFLVLV  131 (141)
T ss_pred             EEEEeecccchH--HHHHHHHHH---cCCCEEEEc
Confidence            666544433221  234444444   554444433

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.12  E-value=3.4e-05  Score=67.54  Aligned_cols=116  Identities=22%  Similarity=0.261  Sum_probs=73.0

Q ss_pred             HHHhccC-CCCeEEEEcCcc---cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--
Q 021344          159 QEYFKSA-QGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (314)
Q Consensus       159 ~~~l~~~-~~~~iLDiGcG~---G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--  232 (314)
                      .+++... .-..+||||||-   |....-..+..++.+|+-+|+++-.+..++..+....   .....++++|+.+..  
T Consensus        60 Vr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~aD~r~p~~i  136 (267)
T PF04672_consen   60 VRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP---RGRTAYVQADLRDPEAI  136 (267)
T ss_dssp             HHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE--TT-HHHH
T ss_pred             HHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC---CccEEEEeCCCCCHHHH
Confidence            3444443 335799999996   4444444445778899999999999999999887653   123899999997632  


Q ss_pred             ----CCCCchh-----hheecchhccCCC---HHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 ----FASGFVD-----AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 ----~~~~~fD-----~V~~~~vl~h~~d---~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                          -..+-+|     .|++..+|||++|   |..+++.+...|.||.+|+++....
T Consensus       137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred             hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence                1112344     4778899999965   7799999999999999999988765

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.11  E-value=1.6e-05  Score=71.72  Aligned_cols=87  Identities=21%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.++||+||++|.|+..+.++|.  +|++||..+-. ..    +.     ...+|....+|........+.+|.|+|.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~l~-~~----L~-----~~~~V~h~~~d~fr~~p~~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGPMA-QS----LM-----DTGQVEHLRADGFKFRPPRKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechhcC-Hh----hh-----CCCCEEEEeccCcccCCCCCCCCEEEEe
Confidence            5788999999999999999999986  99999966522 11    11     2478999998876643235689999987


Q ss_pred             chhccCCCHHHHHHHHHhhcccC
Q 021344          245 AALHCWPSPSNAVAEISRILRSG  267 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpG  267 (314)
                      .+    ..|..+.+-+.+.|..|
T Consensus       278 mv----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        278 MV----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             cc----cCHHHHHHHHHHHHhcC
Confidence            65    56888888888888776

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.10  E-value=7.8e-06  Score=75.52  Aligned_cols=73  Identities=23%  Similarity=0.467  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      +.+++.+.++++..++ .+||+-||.|.++..+++...  +|+|+|.++.+++.|+++++..++   .|++|+.+++++
T Consensus       183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i---~n~~f~~~~~~~  255 (352)
T PF05958_consen  183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGI---DNVEFIRGDAED  255 (352)
T ss_dssp             HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHH
T ss_pred             HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCC---CcceEEEeeccc
Confidence            4456677777777655 899999999999999999876  999999999999999999999875   799999887654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.08  E-value=1.4e-05  Score=70.77  Aligned_cols=105  Identities=12%  Similarity=0.233  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ....+.+.+.+...++..|||||+|.|.++..+.+.+.  +++++|+++...+..++++..     ..+++++.+|+.++
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~   88 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKW   88 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhcc
Confidence            44567788888887899999999999999999999985  999999999999999987652     37899999999887


Q ss_pred             CCCC---CchhhheecchhccCCCHHHHHHHHHhhccc
Q 021344          232 PFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRS  266 (314)
Q Consensus       232 p~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp  266 (314)
                      ....   ..-..|+++--. +  -...++.++...-+.
T Consensus        89 ~~~~~~~~~~~~vv~NlPy-~--is~~il~~ll~~~~~  123 (262)
T PF00398_consen   89 DLYDLLKNQPLLVVGNLPY-N--ISSPILRKLLELYRF  123 (262)
T ss_dssp             CGGGHCSSSEEEEEEEETG-T--GHHHHHHHHHHHGGG
T ss_pred             ccHHhhcCCceEEEEEecc-c--chHHHHHHHhhcccc
Confidence            6543   223344443221 1  124566666663344

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.06  E-value=1.4e-05  Score=71.59  Aligned_cols=124  Identities=19%  Similarity=0.235  Sum_probs=94.4

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-C-
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-  232 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p-  232 (314)
                      ......+.+.++.+|||..+|.|.-+.+++.... ...+++.|+++..+...+++++..|.   .++.....|.... + 
T Consensus        75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~---~~v~~~~~D~~~~~~~  151 (283)
T PF01189_consen   75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV---FNVIVINADARKLDPK  151 (283)
T ss_dssp             HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHH
T ss_pred             ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC---ceEEEEeecccccccc
Confidence            3445567788899999999999998888887743 56999999999999999999998763   7888888887654 1 


Q ss_pred             CCCCchhhhee------cchhccCCCH----------------HHHHHHHHhhc----ccCcEEEEEecccCCCCC
Q 021344          233 FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRIL----RSGGVFVGTTFLRYTSST  282 (314)
Q Consensus       233 ~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~r~L----kpGG~l~i~~~~~~~~~~  282 (314)
                      .....||.|+.      .+++..-++.                .++|+.+.+.+    ||||+++.+|-+-.+..+
T Consensus       152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eEN  227 (283)
T PF01189_consen  152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEEN  227 (283)
T ss_dssp             HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGT
T ss_pred             ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHH
Confidence            22335999986      2444444432                25799999999    999999999876654444

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.05  E-value=1.3e-05  Score=65.55  Aligned_cols=99  Identities=17%  Similarity=0.190  Sum_probs=76.7

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v  246 (314)
                      .+.+.|+|.|+|-++...+....  +|++++.++...+.|.++++..+   ..+++++.+|+.+..|.  ..|+|+|-..
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~fe--~ADvvicEml  105 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDFE--NADVVICEML  105 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEeccccccccc--ccceeHHHHh
Confidence            46899999999999988887754  99999999999999999876654   58999999999998883  5799987422


Q ss_pred             --hccCCCHHHHHHHHHhhcccCcEEEE
Q 021344          247 --LHCWPSPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       247 --l~h~~d~~~~l~~i~r~LkpGG~l~i  272 (314)
                        .--......++..+...||-.+.++=
T Consensus       106 DTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         106 DTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence              00011223677777788888887764

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.00  E-value=7.7e-05  Score=63.24  Aligned_cols=108  Identities=18%  Similarity=0.219  Sum_probs=74.7

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCc
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF  237 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~  237 (314)
                      +...++.+||-+|.++|....++++. ++...|+++|+|+...+..-+..+..     .|+--+.+|+....   .--+.
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~lv~~  143 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRMLVEM  143 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTTS--
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhccccc
Confidence            45678899999999999999999987 55779999999997655554443332     78999999987521   11247


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +|+|++.-.  +-.+..-++.++...||+||.+++..-.
T Consensus       144 VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa  180 (229)
T PF01269_consen  144 VDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKA  180 (229)
T ss_dssp             EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEec
Confidence            888887532  2223346788888999999999987644

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.98  E-value=9.8e-06  Score=70.90  Aligned_cols=110  Identities=19%  Similarity=0.266  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCcccHHH-HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-------------CCC------------CC
Q 021344          166 QGGLLVDVSCGSGLFS-RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-------------TIL------------TS  219 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~-~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~------------~~  219 (314)
                      ++.++||||||.--+- ..+.+..  .+++..|+++.-.+..++.++..+             ++.            -.
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            4678999999985442 2222333  389999999999988877776644             000            01


Q ss_pred             Ce-EEEEecCCCCC-CCC-----CchhhheecchhccCC-CH---HHHHHHHHhhcccCcEEEEEeccc
Q 021344          220 NL-ALVRADVCRLP-FAS-----GFVDAVHAGAALHCWP-SP---SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       220 ~v-~~~~~d~~~lp-~~~-----~~fD~V~~~~vl~h~~-d~---~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .| .++.+|+.+.+ +..     .+||+|++.+.++... |.   ...++++.++|||||.|++.....
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~  202 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG  202 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence            23 36778887643 322     2599999999998764 44   368999999999999999987654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.91  E-value=1.1e-05  Score=67.71  Aligned_cols=92  Identities=17%  Similarity=0.203  Sum_probs=69.7

Q ss_pred             CCchHHHHHHHHHhccC-CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          149 PGPDEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      ..++.....+....... ....|+|.-||.|..+..++..++  .|++||+++.-+..|+++++-.|+  ..+|+|++||
T Consensus        76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI--~~rItFI~GD  151 (263)
T KOG2730|consen   76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGV--PDRITFICGD  151 (263)
T ss_pred             eccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecC--CceeEEEech
Confidence            34555555555543322 456899999999999999999988  999999999999999999999985  4699999999


Q ss_pred             CCCC----CCCCCchhhheec
Q 021344          228 VCRL----PFASGFVDAVHAG  244 (314)
Q Consensus       228 ~~~l----p~~~~~fD~V~~~  244 (314)
                      +.++    .+....+|+|+.+
T Consensus       152 ~ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen  152 FLDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             HHHHHHHHhhhhheeeeeecC
Confidence            8653    2333345566553

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.89  E-value=9.1e-05  Score=66.75  Aligned_cols=130  Identities=17%  Similarity=0.220  Sum_probs=90.3

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH--HHHhcC--CCCCCCeEEEEecCCCC-CCCCCchhh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD--FIKQDN--TILTSNLALVRADVCRL-PFASGFVDA  240 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~--~~~~~~--~~~~~~v~~~~~d~~~l-p~~~~~fD~  240 (314)
                      ...++|-+|.|.|.-++++.+.-...+++-+|.+|.|++.+++  .+...+  .-..++++++..|+.+. .-..+.||+
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~  368 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV  368 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence            3568999999999999999987546699999999999999983  333221  11356899999998663 233458999


Q ss_pred             heecchhccCCCH----------HHHHHHHHhhcccCcEEEEEecccCCCCCcc--chHHHHHHHHhhhccc
Q 021344          241 VHAGAALHCWPSP----------SNAVAEISRILRSGGVFVGTTFLRYTSSTSL--TGRVLREVMLIRIKSH  300 (314)
Q Consensus       241 V~~~~vl~h~~d~----------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~--~~~~l~~~~~~~~~~~  300 (314)
                      |+..     ++||          ..+..-+.+.|+++|.+++..-+.......+  ....+++.-+...+.|
T Consensus       369 vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyh  435 (508)
T COG4262         369 VIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYH  435 (508)
T ss_pred             EEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeE
Confidence            9875     3455          3678889999999999999775554333322  2234444444433333

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.88  E-value=6.2e-05  Score=60.04  Aligned_cols=59  Identities=25%  Similarity=0.318  Sum_probs=50.7

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ++||+|||.|.++..+++.++..+++++|+++.+.+.++++++..+.   .++.++...+..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence            48999999999999999998867899999999999999999887652   458888777654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.87  E-value=7.7e-05  Score=66.96  Aligned_cols=88  Identities=10%  Similarity=0.150  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .+.+.+.+.+...+++.++|.-+|.|..+..+++..+..+|+|+|.++.+++.++++++...    .++.++++++.++.
T Consensus         7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~----~R~~~i~~nF~~l~   82 (305)
T TIGR00006         7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE----GRVVLIHDNFANFF   82 (305)
T ss_pred             hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC----CcEEEEeCCHHHHH
Confidence            34456666777778889999999999999999987545799999999999999999887643    68999999987643


Q ss_pred             -----CCCCchhhheec
Q 021344          233 -----FASGFVDAVHAG  244 (314)
Q Consensus       233 -----~~~~~fD~V~~~  244 (314)
                           ...+++|.|++.
T Consensus        83 ~~l~~~~~~~vDgIl~D   99 (305)
T TIGR00006        83 EHLDELLVTKIDGILVD   99 (305)
T ss_pred             HHHHhcCCCcccEEEEe
Confidence                 123468887764

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.81  E-value=0.00024  Score=62.89  Aligned_cols=106  Identities=16%  Similarity=0.193  Sum_probs=67.1

Q ss_pred             CCeEEEEcCcc-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHH-hcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          167 GGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIK-QDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       167 ~~~iLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~-~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      +.+|+=||+|. -..+..+++. +.+..++++|+++.+++.+++.++ ..+  ...++.|+.+|....+..-..||+|+.
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~~~m~f~~~d~~~~~~dl~~~DvV~l  198 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LSKRMSFITADVLDVTYDLKEYDVVFL  198 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H-SSEEEEES-GGGG-GG----SEEEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--ccCCeEEEecchhccccccccCCEEEE
Confidence            35999999997 4445555543 555689999999999999999877 333  357899999999876654468999987


Q ss_pred             cchhc-cCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          244 GAALH-CWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       244 ~~vl~-h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ..... --.+..+++.++.+.++||..+++-.
T Consensus       199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            54432 11267799999999999999999875

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=3.4e-05  Score=72.50  Aligned_cols=77  Identities=16%  Similarity=0.281  Sum_probs=66.6

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      ...+.....+.+++....+..+||+-||+|.++..+++...  .|+|+++++++++.|+.+.+.+++   .|.+|+++-+
T Consensus       366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ngi---sNa~Fi~gqa  440 (534)
T KOG2187|consen  366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGI---SNATFIVGQA  440 (534)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCc---cceeeeecch
Confidence            33455667788888888888999999999999999998865  999999999999999999999875   8999999965


Q ss_pred             CC
Q 021344          229 CR  230 (314)
Q Consensus       229 ~~  230 (314)
                      ++
T Consensus       441 E~  442 (534)
T KOG2187|consen  441 ED  442 (534)
T ss_pred             hh
Confidence            55

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.00014  Score=64.34  Aligned_cols=111  Identities=22%  Similarity=0.211  Sum_probs=75.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH---HhcC-------------------------C--
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI---KQDN-------------------------T--  215 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~---~~~~-------------------------~--  215 (314)
                      ...+||--|||.|+++..++..|+  .+-|-|+|--|+-...=.+   +..+                         .  
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD  227 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD  227 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence            456899999999999999999998  6667788766543222111   1111                         0  


Q ss_pred             -------CCCCCeEEEEecCCCC---CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          216 -------ILTSNLALVRADVCRL---PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       216 -------~~~~~v~~~~~d~~~l---p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                             .....+....||+.+.   +-..+.||+|+..+.+..-.|.-.+++.|..+|||||+++=..+..+
T Consensus       228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlY  300 (369)
T KOG2798|consen  228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLY  300 (369)
T ss_pred             ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceee
Confidence                   0011223334555332   11234799999888888888889999999999999999987666553

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.69  E-value=0.00011  Score=60.57  Aligned_cols=117  Identities=19%  Similarity=0.251  Sum_probs=75.3

Q ss_pred             HHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHH-----HHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYD-----FIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~-----~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      .+...+++.+|+|+=.|.|+|++.++.. ++...|+++=+.+...-..+.     .+..+.  ...|++.+..+...++ 
T Consensus        42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~--~~aN~e~~~~~~~A~~-  118 (238)
T COG4798          42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP--VYANVEVIGKPLVALG-  118 (238)
T ss_pred             EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh--hhhhhhhhCCcccccC-
Confidence            3556788999999999999999999887 555678877655431111000     011001  2345566665655555 


Q ss_pred             CCCchhhheecchhc-------cCCCHHHHHHHHHhhcccCcEEEEEecccCC
Q 021344          234 ASGFVDAVHAGAALH-------CWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~-------h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      +.+..|+++....-|       |-....++.+++.+.|||||++++.+....+
T Consensus       119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p  171 (238)
T COG4798         119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP  171 (238)
T ss_pred             CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence            345566666532222       2223468899999999999999999987654

>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function

Probab=97.67  E-value=1.8e-05  Score=54.82  Aligned_cols=46  Identities=24%  Similarity=0.517  Sum_probs=31.8

Q ss_pred             CCCeeeccCCCccchhc---C----------------CCCccccccccCceecCCCCccccCccc
Q 021344           57 EGDLFSCPICYEPLIRK---G----------------PTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~---~----------------~~~~~~~~i~~~~l~C~~C~~~~~~~~g  102 (314)
                      ..++++||.|+++|...   .                ....-..++.++.+.|++|++.|++++|
T Consensus         4 llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG   68 (68)
T PF03966_consen    4 LLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG   68 (68)
T ss_dssp             GCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred             HHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence            45789999999988000   0                0000124677899999999999999987

The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.66  E-value=0.00044  Score=58.79  Aligned_cols=114  Identities=15%  Similarity=0.128  Sum_probs=75.5

Q ss_pred             EEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc-hhhheecchhc
Q 021344          170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF-VDAVHAGAALH  248 (314)
Q Consensus       170 iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~-fD~V~~~~vl~  248 (314)
                      |.||||--|++..+|.+.+...+++++|+++.-++.|++.++..+  ...++++..+|-.. ++..+. .|.|+..++=-
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGG   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGG-G--GGG---EEEEEEE-H
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCccc-ccCCCCCCCEEEEecCCH
Confidence            689999999999999999877789999999999999999999988  46889999999543 222333 78777543300


Q ss_pred             cCCCHHHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHHHhh
Q 021344          249 CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIR  296 (314)
Q Consensus       249 h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~~~~  296 (314)
                      .  -...+|.+....++....|++....        ....+++|.+..
T Consensus        78 ~--lI~~ILe~~~~~~~~~~~lILqP~~--------~~~~LR~~L~~~  115 (205)
T PF04816_consen   78 E--LIIEILEAGPEKLSSAKRLILQPNT--------HAYELRRWLYEN  115 (205)
T ss_dssp             H--HHHHHHHHTGGGGTT--EEEEEESS---------HHHHHHHHHHT
T ss_pred             H--HHHHHHHhhHHHhccCCeEEEeCCC--------ChHHHHHHHHHC
Confidence            0  1235566666666655667765522        355666666543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=2.4e-05  Score=62.53  Aligned_cols=122  Identities=16%  Similarity=0.077  Sum_probs=80.8

Q ss_pred             HHHHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC--CCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPF  233 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~--lp~  233 (314)
                      .+.+....-.+.+||++|.|. |..+..++...+...|...|-++..++..++..-.+.......+..+..+...  ...
T Consensus        20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~   99 (201)
T KOG3201|consen   20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ   99 (201)
T ss_pred             HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH
Confidence            333333334567899999996 55666667777778999999999999888876543311011233233333221  112


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ...+||+|++...+..-..-..+++.|.+.|+|.|..++..+.+.
T Consensus       100 eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg  144 (201)
T KOG3201|consen  100 EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG  144 (201)
T ss_pred             hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence            345899999976654333346789999999999999888886654

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.59  E-value=3.1e-05  Score=61.42  Aligned_cols=57  Identities=26%  Similarity=0.219  Sum_probs=47.0

Q ss_pred             eEEEEecCCCCCCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          221 LALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       221 v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +.+++-.....+|.+++.|+|.+.+|+||+.-.  ..+++++++.|||||+|-++.+..
T Consensus        31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl   89 (185)
T COG4627          31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL   89 (185)
T ss_pred             cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence            444443345578999999999999999998744  478999999999999999998765

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.55  E-value=1.2e-05  Score=60.88  Aligned_cols=100  Identities=17%  Similarity=0.236  Sum_probs=42.1

Q ss_pred             EEEcCcccHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhheecc
Q 021344          171 VDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGA  245 (314)
Q Consensus       171 LDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~~~~  245 (314)
                      ||||+..|..+..+++....   .+++++|..+. .+.+++.++..+  ...+++++.++..+.  .+..++||+|+...
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~--~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG--LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------GG--G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC--CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            68999999988877765322   27999999995 233333333332  346799999998542  13356899999764


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      . |........+..+.+.|+|||++++-+
T Consensus        78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   78 D-HSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            2 111223467888999999999998754

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.54  E-value=0.0013  Score=58.77  Aligned_cols=113  Identities=17%  Similarity=0.133  Sum_probs=76.6

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC--CCC-----
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----  231 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~--~~l-----  231 (314)
                      .....+.+.+||-+|+|. |..+...++.....+|+.+|+++..++.|++ +..      ..+.......  ..+     
T Consensus       163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga------~~~~~~~~~~~~~~~~~~v~  235 (354)
T KOG0024|consen  163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA------TVTDPSSHKSSPQELAELVE  235 (354)
T ss_pred             hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC------eEEeeccccccHHHHHHHHH
Confidence            344567799999999998 8888888887656799999999999999998 321      1222221111  000     


Q ss_pred             -CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCCCCCccc
Q 021344          232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT  285 (314)
Q Consensus       232 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~  285 (314)
                       -.....+|+.+....      .+..++.....++.||.+++..+.......|..
T Consensus       236 ~~~g~~~~d~~~dCsG------~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~  284 (354)
T KOG0024|consen  236 KALGKKQPDVTFDCSG------AEVTIRAAIKATRSGGTVVLVGMGAEEIQFPII  284 (354)
T ss_pred             hhccccCCCeEEEccC------chHHHHHHHHHhccCCEEEEeccCCCccccChh
Confidence             022345787775443      245577778899999999999988765554443

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.47  E-value=0.00035  Score=55.27  Aligned_cols=83  Identities=22%  Similarity=0.337  Sum_probs=59.0

Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhheecchhccCCC--------H---HHHHH
Q 021344          192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPS--------P---SNAVA  258 (314)
Q Consensus       192 ~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d--------~---~~~l~  258 (314)
                      +|+|+|+-+.+++..++++++.+  ...+++++..+=+.+.  .+.+++|+|+.+  |-++|.        +   ...++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHH
Confidence            58999999999999999999987  3468999998876654  223478888875  344442        2   26788


Q ss_pred             HHHhhcccCcEEEEEecccC
Q 021344          259 EISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       259 ~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .+.++|+|||++.+..|...
T Consensus        77 ~al~lL~~gG~i~iv~Y~GH   96 (140)
T PF06962_consen   77 AALELLKPGGIITIVVYPGH   96 (140)
T ss_dssp             HHHHHEEEEEEEEEEE--ST
T ss_pred             HHHHhhccCCEEEEEEeCCC
Confidence            89999999999999997654

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.45  E-value=0.00067  Score=58.05  Aligned_cols=98  Identities=20%  Similarity=0.285  Sum_probs=69.9

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCe-EEEEecCCCCC---CCCCchh
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLP---FASGFVD  239 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v-~~~~~d~~~lp---~~~~~fD  239 (314)
                      ..++..+||||+.||.|+.-+.++|. ..|+|+|..-+.+..--+        ...++ .+...|+..+.   +. +..|
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR--------~d~rV~~~E~tN~r~l~~~~~~-~~~d  146 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLR--------NDPRVIVLERTNVRYLTPEDFT-EKPD  146 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHh--------cCCcEEEEecCChhhCCHHHcc-cCCC
Confidence            34688999999999999999999984 589999998876654333        12444 34445554432   22 2577


Q ss_pred             hheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++++.-.+-   ....+|..+..+++++|-++...
T Consensus       147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             eEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe
Confidence            888765543   34678999999999999877644

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.45  E-value=0.003  Score=52.74  Aligned_cols=106  Identities=18%  Similarity=0.218  Sum_probs=78.7

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCch
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV  238 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~f  238 (314)
                      ++..++.+||=+|..+|....++++.-....++++|+|+...+..-...++.     .|+--+.+|+....   .--+..
T Consensus        72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~V  146 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKV  146 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhcccc
Confidence            4567899999999999999999999865678999999998776666655543     68888889986521   112457


Q ss_pred             hhheecchhccCCCH---HHHHHHHHhhcccCcEEEEEeccc
Q 021344          239 DAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       239 D~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      |+|+..     +.+|   .-+..++...||+||.+++..=.+
T Consensus       147 Dviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKAr  183 (231)
T COG1889         147 DVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKAR  183 (231)
T ss_pred             cEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEee
Confidence            777753     3344   346788899999999877765433

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.37  E-value=0.00089  Score=55.04  Aligned_cols=101  Identities=17%  Similarity=0.173  Sum_probs=67.0

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cCCCC--------CC
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRL--------PF  233 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~~~l--------p~  233 (314)
                      ..++.+|||+||..|.+++-..++ +|+..|.|||+-.-.              ...++.++++ |+.+.        ..
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------------p~~Ga~~i~~~dvtdp~~~~ki~e~l  132 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------------PPEGATIIQGNDVTDPETYRKIFEAL  132 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------------CCCCcccccccccCCHHHHHHHHHhC
Confidence            356899999999999999988777 488899999984311              2345666666 55441        13


Q ss_pred             CCCchhhheecch--------hccCCCH---HHHHHHHHhhcccCcEEEEEecccC
Q 021344          234 ASGFVDAVHAGAA--------LHCWPSP---SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       234 ~~~~fD~V~~~~v--------l~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++...|+|++...        ..|....   ..++.-....++|+|.++.-.|...
T Consensus       133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence            4567888887432        2221111   1344445567889999999887653

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.34  E-value=0.0013  Score=60.59  Aligned_cols=119  Identities=17%  Similarity=0.174  Sum_probs=86.9

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCc
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF  237 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~  237 (314)
                      +.++++.+|||..+..|.=+.+++.. .-...+++.|.+...+...+.++...|   ..+......|...+|   ++. +
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~-~  312 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG-S  312 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-c
Confidence            45788999999999998765555544 113389999999999999999999887   377778888887655   444 8


Q ss_pred             hhhhee----cc--hhccCC----------------CHHHHHHHHHhhcccCcEEEEEecccCCCCCcc
Q 021344          238 VDAVHA----GA--ALHCWP----------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL  284 (314)
Q Consensus       238 fD~V~~----~~--vl~h~~----------------d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~  284 (314)
                      ||-|+.    ++  ++.--.                -..++|......+|+||+|+-+|.+-....+.+
T Consensus       313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~  381 (460)
T KOG1122|consen  313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEA  381 (460)
T ss_pred             cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHH
Confidence            999885    33  222110                013678888899999999999997765544443

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.30  E-value=0.0043  Score=59.93  Aligned_cols=145  Identities=17%  Similarity=0.097  Sum_probs=100.8

Q ss_pred             CCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCe
Q 021344          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT----YSGVVALDFSENMLRQCYDFIKQDNTILTSNL  221 (314)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v  221 (314)
                      +.++++.+..+.+.+.+.+.+..+|+|..||+|.++....+...    ...++|.|+++.....++.++--++..  .++
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--~~~  243 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--GDA  243 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC--ccc
Confidence            45788999999999999887788999999999998777766531    257999999999999999988887741  245


Q ss_pred             EEEEecCCCCCC-----CCCchhhheecchh---ccCC---------------------CH-HHHHHHHHhhcccCcEEE
Q 021344          222 ALVRADVCRLPF-----ASGFVDAVHAGAAL---HCWP---------------------SP-SNAVAEISRILRSGGVFV  271 (314)
Q Consensus       222 ~~~~~d~~~lp~-----~~~~fD~V~~~~vl---~h~~---------------------d~-~~~l~~i~r~LkpGG~l~  271 (314)
                      ....+|...-|.     ..+.||+|+++--+   .+..                     .. ..+++.+...|+|||+..
T Consensus       244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa  323 (489)
T COG0286         244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA  323 (489)
T ss_pred             cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence            666666544442     23569988874221   1110                     01 478999999999999777


Q ss_pred             EEecccCCCCCccchHHHHHHH
Q 021344          272 GTTFLRYTSSTSLTGRVLREVM  293 (314)
Q Consensus       272 i~~~~~~~~~~~~~~~~l~~~~  293 (314)
                      +..+........ ....+++..
T Consensus       324 ivl~~gvlfr~~-~e~~IR~~l  344 (489)
T COG0286         324 IVLPDGVLFRGG-AEKDIRKDL  344 (489)
T ss_pred             EEecCCcCcCCC-chHHHHHHH
Confidence            776554322222 244444444

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.28  E-value=0.0027  Score=53.77  Aligned_cols=113  Identities=13%  Similarity=0.130  Sum_probs=81.1

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ....+.++++.  +.++.||||-.|++..++.+.++...+++.|+++.-++.|.+++...+  ...+++...+|... ++
T Consensus         6 RL~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~-~l   80 (226)
T COG2384           6 RLTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLA-VL   80 (226)
T ss_pred             HHHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCcc-cc
Confidence            34455666655  455999999999999999999988899999999999999999999988  56888888888743 33


Q ss_pred             C-CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344          234 A-SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       234 ~-~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      . ++.+|+|+..+.=.  .-...+|++-.+.|+.==++++.
T Consensus        81 ~~~d~~d~ivIAGMGG--~lI~~ILee~~~~l~~~~rlILQ  119 (226)
T COG2384          81 ELEDEIDVIVIAGMGG--TLIREILEEGKEKLKGVERLILQ  119 (226)
T ss_pred             CccCCcCEEEEeCCcH--HHHHHHHHHhhhhhcCcceEEEC
Confidence            3 34799887643200  01234566655655533345553

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.24  E-value=0.00066  Score=57.30  Aligned_cols=112  Identities=10%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             HhccCCCCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---
Q 021344          161 YFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---  233 (314)
                      .+-..++..|+|+|.-.|..+..+++.    +...+|+|+|++......  +..+.+.  ...+|++++||..+...   
T Consensus        27 li~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp--~~~rI~~i~Gds~d~~~~~~  102 (206)
T PF04989_consen   27 LIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP--MSPRITFIQGDSIDPEIVDQ  102 (206)
T ss_dssp             HHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHHHHT
T ss_pred             HHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc--ccCceEEEECCCCCHHHHHH
Confidence            333345679999999998877666543    356799999996433211  1222222  23799999999865321   


Q ss_pred             -C--CCchhhhe-ecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 -A--SGFVDAVH-AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 -~--~~~fD~V~-~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       .  ....+-++ +-.+-|...+..+.|+....++++|+++++.+..
T Consensus       103 v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~  149 (206)
T PF04989_consen  103 VRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI  149 (206)
T ss_dssp             SGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred             HHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence             0  11122222 2223333345567888899999999999997643

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.19  E-value=0.00095  Score=57.78  Aligned_cols=81  Identities=14%  Similarity=0.168  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      +..+|+|||||.=-++.......++..++|+|++..+++.....+...+    .+.++...|+..-+ +....|+.+..=
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~-~~~~~DlaLllK  179 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP-PKEPADLALLLK  179 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH-TTSEESEEEEET
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC-CCCCcchhhHHH
Confidence            3789999999998888877777667799999999999999999888765    67888888987654 356789999877


Q ss_pred             hhccCC
Q 021344          246 ALHCWP  251 (314)
Q Consensus       246 vl~h~~  251 (314)
                      +++.+.
T Consensus       180 ~lp~le  185 (251)
T PF07091_consen  180 TLPCLE  185 (251)
T ss_dssp             -HHHHH
T ss_pred             HHHHHH
Confidence            666543

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.0022  Score=50.72  Aligned_cols=118  Identities=15%  Similarity=0.169  Sum_probs=82.8

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      +...+.++.+..++...+.++.+|+|+|.|+...+.++.+ -...+|+|+++-.+.+++-..-.++  ......|..-|+
T Consensus        55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~Rkdl  131 (199)
T KOG4058|consen   55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDL  131 (199)
T ss_pred             CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhh
Confidence            4445667777888888777899999999999999999987 3489999999999888877666665  457788888888


Q ss_pred             CCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+..+.+-.+  |+.+.+=.-++|.   -.++..-+..|..++-.-
T Consensus       132 wK~dl~dy~~--vviFgaes~m~dL---e~KL~~E~p~nt~vvacR  172 (199)
T KOG4058|consen  132 WKVDLRDYRN--VVIFGAESVMPDL---EDKLRTELPANTRVVACR  172 (199)
T ss_pred             hhccccccce--EEEeehHHHHhhh---HHHHHhhCcCCCeEEEEe
Confidence            8776655434  4443332223333   333444455666666544

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.13  E-value=0.0015  Score=58.50  Aligned_cols=92  Identities=14%  Similarity=0.131  Sum_probs=51.7

Q ss_pred             HHHHHHHHhccCC-----CCeEEEEcCcccHH-H-HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCCeEEEE
Q 021344          154 EFKMAQEYFKSAQ-----GGLLVDVSCGSGLF-S-RKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR  225 (314)
Q Consensus       154 ~~~~l~~~l~~~~-----~~~iLDiGcG~G~~-~-~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~  225 (314)
                      .+..+.+++....     ..++||||+|.... . ......++  +++|.|+++..++.|+++++.+ +  ...+|+++.
T Consensus        85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W--~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~  160 (299)
T PF05971_consen   85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW--SFVATDIDPKSLESARENVERNPN--LESRIELRK  160 (299)
T ss_dssp             HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE
T ss_pred             HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC--eEEEecCCHHHHHHHHHHHHhccc--cccceEEEE
Confidence            3445555554322     35799999999743 2 22233344  9999999999999999999988 5  467888887


Q ss_pred             ecCCC-----CCCCCCchhhheecchhcc
Q 021344          226 ADVCR-----LPFASGFVDAVHAGAALHC  249 (314)
Q Consensus       226 ~d~~~-----lp~~~~~fD~V~~~~vl~h  249 (314)
                      ..-..     +...++.||+.+|+=-++.
T Consensus       161 ~~~~~~i~~~i~~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  161 QKNPDNIFDGIIQPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             --ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred             cCCccccchhhhcccceeeEEecCCcccc
Confidence            64322     1223468999999655543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.13  E-value=0.0071  Score=55.08  Aligned_cols=99  Identities=19%  Similarity=0.222  Sum_probs=68.6

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec-CCCCCCCCCchh
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRLPFASGFVD  239 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d-~~~lp~~~~~fD  239 (314)
                      ....++.+|+-+|+|. |..+.++++... .+|+++|.+++..+.|++.-         .-.++... ....+.-.+.||
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lG---------Ad~~i~~~~~~~~~~~~~~~d  231 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLG---------ADHVINSSDSDALEAVKEIAD  231 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhC---------CcEEEEcCCchhhHHhHhhCc
Confidence            4567899999999883 567777887432 59999999999999999842         22333322 111111122388


Q ss_pred             hheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +|+..-.       ...+....+.||+||.+++.....
T Consensus       232 ~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         232 AIIDTVG-------PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             EEEECCC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence            8876543       455888889999999999988663

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.09  E-value=0.00095  Score=63.01  Aligned_cols=97  Identities=23%  Similarity=0.275  Sum_probs=66.8

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCH----HHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCCCCCCch
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE----NMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFV  238 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~----~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~lp~~~~~f  238 (314)
                      ...-..|+|...|.|.|+.+|.+..    |..+...+    +.+....+          .++--+..|. +.++.-+.+|
T Consensus       363 ~~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIyd----------RGLIG~yhDWCE~fsTYPRTY  428 (506)
T PF03141_consen  363 WGRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYD----------RGLIGVYHDWCEAFSTYPRTY  428 (506)
T ss_pred             ccceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhh----------cccchhccchhhccCCCCcch
Confidence            3344579999999999999998653    44444433    23333332          1222222333 3345456899


Q ss_pred             hhheecchhccCCC---HHHHHHHHHhhcccCcEEEEEe
Q 021344          239 DAVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       239 D~V~~~~vl~h~~d---~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+|++.++|.+..+   ...+|-|+.|+|+|||.++|.+
T Consensus       429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD  467 (506)
T PF03141_consen  429 DLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD  467 (506)
T ss_pred             hheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence            99999999887654   4678999999999999999987

; GO: 0008168 methyltransferase activity

>PRK10742 putative methyltransferase; Provisional

Probab=97.03  E-value=0.0028  Score=55.02  Aligned_cols=117  Identities=13%  Similarity=-0.019  Sum_probs=80.4

Q ss_pred             HHHHHHhccCCCC--eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc------CCCCCCCeEEEEec
Q 021344          156 KMAQEYFKSAQGG--LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD------NTILTSNLALVRAD  227 (314)
Q Consensus       156 ~~l~~~l~~~~~~--~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~~~~~~v~~~~~d  227 (314)
                      +.+.+....+++.  +|||.-+|.|..+..++..|.  +|+++|-++......++.++..      +.....+++++.+|
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d  153 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence            3566667666666  899999999999999999986  7999999999988888877763      10001468889998


Q ss_pred             CCCC-CCCCCchhhheecchhcc--------------------CCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          228 VCRL-PFASGFVDAVHAGAALHC--------------------WPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       228 ~~~l-p~~~~~fD~V~~~~vl~h--------------------~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .... .-...+||+|++.=.+.|                    -++...+|++..++-+  -++++-.+.
T Consensus       154 a~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp~  221 (250)
T PRK10742        154 SLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRPD  221 (250)
T ss_pred             HHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecCC
Confidence            7542 212347999997433322                    1234456666666543  556665543

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.01  E-value=0.00083  Score=60.36  Aligned_cols=85  Identities=18%  Similarity=0.305  Sum_probs=61.2

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--  232 (314)
                      .+.+.+.+...+++.++|.--|.|..+..+++..+..+++|+|-++.+++.++++++...    .++.++.+++.++.  
T Consensus         9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~----~r~~~~~~~F~~l~~~   84 (310)
T PF01795_consen    9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD----DRFIFIHGNFSNLDEY   84 (310)
T ss_dssp             HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC----TTEEEEES-GGGHHHH
T ss_pred             HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc----ceEEEEeccHHHHHHH
Confidence            345566777788899999999999999999998777899999999999999998876543    78999999987653  


Q ss_pred             ---C-CCCchhhhee
Q 021344          233 ---F-ASGFVDAVHA  243 (314)
Q Consensus       233 ---~-~~~~fD~V~~  243 (314)
                         . ...++|.|++
T Consensus        85 l~~~~~~~~~dgiL~   99 (310)
T PF01795_consen   85 LKELNGINKVDGILF   99 (310)
T ss_dssp             HHHTTTTS-EEEEEE
T ss_pred             HHHccCCCccCEEEE
Confidence               2 2346777765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.99  E-value=0.022  Score=49.21  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCC-CCCchhhhee
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~-~~~~fD~V~~  243 (314)
                      .+++||=+|=..- .+..++..+...+|+.+|+++..++..++..++.+    .+++.+..|+.+ +|- -.++||+++.
T Consensus        44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g----l~i~~~~~DlR~~LP~~~~~~fD~f~T  118 (243)
T PF01861_consen   44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEG----LPIEAVHYDLRDPLPEELRGKFDVFFT  118 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEEE
T ss_pred             cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC----CceEEEEecccccCCHHHhcCCCEEEe
Confidence            5789999984443 33344444555699999999999999999999987    459999999965 331 1478999997


Q ss_pred             cchhccCCCHHHHHHHHHhhcccCc-EEEE
Q 021344          244 GAALHCWPSPSNAVAEISRILRSGG-VFVG  272 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~~i~r~LkpGG-~l~i  272 (314)
                      .=. +...-..-++......||..| ..++
T Consensus       119 DPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~  147 (243)
T PF01861_consen  119 DPP-YTPEGLKLFLSRGIEALKGEGCAGYF  147 (243)
T ss_dssp             ----SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred             CCC-CCHHHHHHHHHHHHHHhCCCCceEEE
Confidence            310 000011468888899998766 4433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.92  E-value=0.0039  Score=56.22  Aligned_cols=112  Identities=15%  Similarity=0.074  Sum_probs=73.5

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC----CCCCCCCC
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASG  236 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~----~~lp~~~~  236 (314)
                      .+.-...+|||+|.|.|.-+.++....|+ ..++.++.|+..-+...........   ........|+    ..+|. ..
T Consensus       109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t---~~td~r~s~vt~dRl~lp~-ad  184 (484)
T COG5459         109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST---EKTDWRASDVTEDRLSLPA-AD  184 (484)
T ss_pred             CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc---ccCCCCCCccchhccCCCc-cc
Confidence            34445678999999999988888777664 3578888888776666655444321   2222223333    22332 34


Q ss_pred             chhhheecchhccCCCH---HHHHHHHHhhcccCcEEEEEeccc
Q 021344          237 FVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .|++|+..+-|-|..+.   ...++.+..++.|||.++|.+.+.
T Consensus       185 ~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt  228 (484)
T COG5459         185 LYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT  228 (484)
T ss_pred             eeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence            57777776655555443   347888999999999999999543

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.87  E-value=0.0059  Score=54.20  Aligned_cols=86  Identities=17%  Similarity=0.285  Sum_probs=68.7

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      +.+...+.+...+++..+|.--|.|..+..+.+.++ ..+++|+|-++.+++.|++++...+    .++.++++++.++.
T Consensus        11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~~~F~~l~   86 (314)
T COG0275          11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVHGNFANLA   86 (314)
T ss_pred             HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEeCcHHHHH
Confidence            445666778888899999999999999999999875 3469999999999999999988765    78999999876543


Q ss_pred             -----CCCCchhhhee
Q 021344          233 -----FASGFVDAVHA  243 (314)
Q Consensus       233 -----~~~~~fD~V~~  243 (314)
                           ...+++|.|+.
T Consensus        87 ~~l~~~~i~~vDGiL~  102 (314)
T COG0275          87 EALKELGIGKVDGILL  102 (314)
T ss_pred             HHHHhcCCCceeEEEE
Confidence                 22345666654

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.73  E-value=0.014  Score=56.35  Aligned_cols=101  Identities=22%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             cCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-----------C
Q 021344          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----------L  231 (314)
Q Consensus       164 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-----------l  231 (314)
                      ..++.+|+-+|+|. |..+...++.. +.+|+++|.++..++.+++.          ..+++..|..+           +
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~  230 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM  230 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence            34688999999998 77777777664 23899999999999988872          23333222211           0


Q ss_pred             --C--------CCC--CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          232 --P--------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 --p--------~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                        .        +.+  +.+|+|+.......-+.|..+.++..+.+||||+++....
T Consensus       231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence              0        011  3589998766544333454556999999999999887665

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.70  E-value=0.022  Score=52.68  Aligned_cols=100  Identities=25%  Similarity=0.232  Sum_probs=70.3

Q ss_pred             CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC------CCCCCC-
Q 021344          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------LPFASG-  236 (314)
Q Consensus       165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~------lp~~~~-  236 (314)
                      .++++|+-+|||. |.++..+++.....+|+++|.++..++.|++...         ...+.....+      .....+ 
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---------~~~~~~~~~~~~~~~~~~~t~g~  237 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---------ADVVVNPSEDDAGAEILELTGGR  237 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---------CeEeecCccccHHHHHHHHhCCC
Confidence            3455899999999 8888888888666799999999999999988432         1222211111      011222 


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCC
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      .+|+|+-.-.      ....+..+.++++|||.+++.......
T Consensus       238 g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         238 GADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             CCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            6898885433      234789999999999999988766543

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=96.66  E-value=0.0021  Score=51.70  Aligned_cols=100  Identities=14%  Similarity=0.206  Sum_probs=65.3

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHH-HHHHHhcCCCCCCCe-EEEEecCCC-CCCCCCchhhhee
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-YDFIKQDNTILTSNL-ALVRADVCR-LPFASGFVDAVHA  243 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a-~~~~~~~~~~~~~~v-~~~~~d~~~-lp~~~~~fD~V~~  243 (314)
                      +++.+-+|...-+.-......| ..+++.+|.++--++.- +           +++ .+...|+.. ..--.++||++.+
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~~-----------dr~ssi~p~df~~~~~~y~~~fD~~as   69 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEFR-----------DRLSSILPVDFAKNWQKYAGSFDFAAS   69 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCcccc-----------cccccccHHHHHHHHHHhhccchhhhe
Confidence            5678889988777666566666 35789998865322111 1           111 111112211 1112468999999


Q ss_pred             cchhccCC-----CH------HHHHHHHHhhcccCcEEEEEecccC
Q 021344          244 GAALHCWP-----SP------SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       244 ~~vl~h~~-----d~------~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .+++||+.     ||      .+.+.++.++|||||.+++..+...
T Consensus        70 ~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~  115 (177)
T PF03269_consen   70 FSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT  115 (177)
T ss_pred             echhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence            99999973     33      3678999999999999999997765

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.64  E-value=0.02  Score=52.17  Aligned_cols=119  Identities=19%  Similarity=0.157  Sum_probs=85.5

Q ss_pred             HhccCCCCeEEEEcCcccHHHHHHHHhCCCC----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----
Q 021344          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS----GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~----~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----  232 (314)
                      .+...++.+|||..+..|.=+.++.+.....    .|++-|.+...+.......+...   ..++.+...|+...|    
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~  226 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYL  226 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceecccccc
Confidence            4567889999999999999887777765433    79999999998888888775543   355666666655443    


Q ss_pred             -----CCCCchhhheec------chhccCCCH-----------------HHHHHHHHhhcccCcEEEEEecccCCCCC
Q 021344          233 -----FASGFVDAVHAG------AALHCWPSP-----------------SNAVAEISRILRSGGVFVGTTFLRYTSST  282 (314)
Q Consensus       233 -----~~~~~fD~V~~~------~vl~h~~d~-----------------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~  282 (314)
                           .....||-|++.      .++.+-++.                 ..+|..-.++||+||.++-+|-+-.+..+
T Consensus       227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN  304 (375)
T KOG2198|consen  227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN  304 (375)
T ss_pred             ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence                 123469988863      333333322                 15788889999999999999988765544

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.58  E-value=0.021  Score=48.22  Aligned_cols=120  Identities=21%  Similarity=0.150  Sum_probs=67.7

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcC------------------
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDN------------------  214 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~------------------  214 (314)
                      ++....++....+-++.|-.||.|+++--+.-..  .-..|+|.|+++++++.|++++.--.                  
T Consensus        40 ~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~  119 (246)
T PF11599_consen   40 FQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQY  119 (246)
T ss_dssp             HHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHc
Confidence            3444445555566789999999999876554432  12379999999999999987765422                  


Q ss_pred             ---------------------CCCCCCeEEEEecCCCCC-----CCCCchhhheecchhccCCCH---------HHHHHH
Q 021344          215 ---------------------TILTSNLALVRADVCRLP-----FASGFVDAVHAGAALHCWPSP---------SNAVAE  259 (314)
Q Consensus       215 ---------------------~~~~~~v~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~---------~~~l~~  259 (314)
                                           .+......+.++|+.+..     -.....|+|+..----++.++         ..+|..
T Consensus       120 ~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~  199 (246)
T PF11599_consen  120 GKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNS  199 (246)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHH
Confidence                                 112345778888887621     112236888875433333222         368999


Q ss_pred             HHhhcccCcEEEEEe
Q 021344          260 ISRILRSGGVFVGTT  274 (314)
Q Consensus       260 i~r~LkpGG~l~i~~  274 (314)
                      ++.+|-.++++.+++
T Consensus       200 l~~vLp~~sVV~v~~  214 (246)
T PF11599_consen  200 LAPVLPERSVVAVSD  214 (246)
T ss_dssp             HHCCS-TT-EEEEEE
T ss_pred             HHhhCCCCcEEEEec
Confidence            999995556666644

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.54  E-value=0.018  Score=49.48  Aligned_cols=106  Identities=21%  Similarity=0.286  Sum_probs=72.1

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCc
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF  237 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~  237 (314)
                      +..+++.+||-+|.++|....+..+. ++..-|+++|+|...=+..-...+.     -.||--+.-|+....   ..-.-
T Consensus       152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgm  226 (317)
T KOG1596|consen  152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGM  226 (317)
T ss_pred             eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeee
Confidence            44578999999999999999998887 6777899999998543332222221     267877888886521   11235


Q ss_pred             hhhheecchhccCCCHH---HHHHHHHhhcccCcEEEEEeccc
Q 021344          238 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~---~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .|+|++.     +..|+   .+.-+..-.||+||-++++.-..
T Consensus       227 VDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisikan  264 (317)
T KOG1596|consen  227 VDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIKAN  264 (317)
T ss_pred             EEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence            7777764     23343   33445677899999999876443

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.52  E-value=0.019  Score=50.07  Aligned_cols=111  Identities=16%  Similarity=0.038  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCCCeEEEEecCCCCC---CCCCc-h
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRLP---FASGF-V  238 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~v~~~~~d~~~lp---~~~~~-f  238 (314)
                      ...+||++|+|+|..+..++... ..+|+-.|..... .....+.......   ....+.....+....+   +.... |
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~  163 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF  163 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence            45679999999997777777644 3488888875432 2222221111100   1123333333332211   22223 9


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      |+|++..++.+-..+..++..+...|..+|.+++.+..+.
T Consensus       164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence            9999999999888888899999999999998888886654

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.40  E-value=0.0098  Score=55.25  Aligned_cols=112  Identities=16%  Similarity=0.166  Sum_probs=65.7

Q ss_pred             CCeEEEEcCcccHHHHHHHH--------h-------CCCCeEEEEeCCHHHHHHHHHHHHhcC---------CC-CCCC-
Q 021344          167 GGLLVDVSCGSGLFSRKFAK--------S-------GTYSGVVALDFSENMLRQCYDFIKQDN---------TI-LTSN-  220 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~--------~-------~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~-~~~~-  220 (314)
                      ..+|+|+|||+|.++..+..        +       .+..+|+.-|.-.+-....-+.+....         +. ...+ 
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            56899999999976644422        1       123567777764332222111111100         00 0011 


Q ss_pred             --eEEEEecCCCCCCCCCchhhheecchhccCCCH--------------------------------------HHHHHHH
Q 021344          221 --LALVRADVCRLPFASGFVDAVHAGAALHCWPSP--------------------------------------SNAVAEI  260 (314)
Q Consensus       221 --v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------------------------~~~l~~i  260 (314)
                        +..+-+.+..--|+.++.+++++...+||+...                                      ..+|+.=
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              122224444445789999999999999997631                                      1244445


Q ss_pred             HhhcccCcEEEEEecccC
Q 021344          261 SRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       261 ~r~LkpGG~l~i~~~~~~  278 (314)
                      ++-|+|||++++....+.
T Consensus       224 a~ELvpGG~mvl~~~Gr~  241 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRT  241 (386)
T ss_pred             HHHhccCcEEEEEEecCC
Confidence            567899999999998875

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.32  E-value=0.019  Score=50.74  Aligned_cols=105  Identities=13%  Similarity=0.180  Sum_probs=80.5

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCCCeEEEEecCCCC--CCCCCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCRL--PFASGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~~~v~~~~~d~~~l--p~~~~~fD~V  241 (314)
                      .+.+++|-||.|.|.+.+...++-.-.++.-+|++.+.++..++.+...... ...++.+..||-..+  ....+.||+|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi  199 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI  199 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence            4578999999999999999888854558899999999999998877763221 346889999986432  1336789999


Q ss_pred             eecchhccCCCH---------HHHHHHHHhhcccCcEEEEEe
Q 021344          242 HAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       242 ~~~~vl~h~~d~---------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +..-     .||         ..++..+.+.||+||++++..
T Consensus       200 i~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  200 ITDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EEec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            8642     233         357888899999999998876

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.27  E-value=0.005  Score=46.04  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=28.6

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCH
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE  200 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~  200 (314)
                      +....+|||||+|.+..-|.+.|.  .-.|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC--Ccccccccc
Confidence            456799999999999999999987  888999743

; GO: 0008168 methyltransferase activity

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.27  E-value=0.046  Score=50.18  Aligned_cols=128  Identities=20%  Similarity=0.110  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHh--------C--------CCCeEEEEeCCHHHHHHH-------HHHHHhcCCCCCCCe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKS--------G--------TYSGVVALDFSENMLRQC-------YDFIKQDNTILTSNL  221 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~--------~--------~~~~v~giD~s~~~~~~a-------~~~~~~~~~~~~~~v  221 (314)
                      ...-+|+|+||..|..+..+...        .        +..+|+--|.=.+-....       .+.....+   ..=+
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~---~~f~   91 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR---NYFV   91 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT---SEEE
T ss_pred             CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc---eEEE
Confidence            34568999999999987665432        1        123677777533211111       11111111   1223


Q ss_pred             EEEEecCCCCCCCCCchhhheecchhccCCCH---------------------------------------HHHHHHHHh
Q 021344          222 ALVRADVCRLPFASGFVDAVHAGAALHCWPSP---------------------------------------SNAVAEISR  262 (314)
Q Consensus       222 ~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~---------------------------------------~~~l~~i~r  262 (314)
                      ..+-+.+..--+++++.|++++...|||+...                                       ..+|+.=++
T Consensus        92 ~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~  171 (334)
T PF03492_consen   92 SGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE  171 (334)
T ss_dssp             EEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44556776656789999999999999987521                                       124555557


Q ss_pred             hcccCcEEEEEecccCCCC-----CccchHHHHHHHHh
Q 021344          263 ILRSGGVFVGTTFLRYTSS-----TSLTGRVLREVMLI  295 (314)
Q Consensus       263 ~LkpGG~l~i~~~~~~~~~-----~~~~~~~l~~~~~~  295 (314)
                      -|+|||++++....+....     .....+.+...+.+
T Consensus       172 ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~d  209 (334)
T PF03492_consen  172 ELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRD  209 (334)
T ss_dssp             HEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHH
T ss_pred             eeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHH
Confidence            7899999999998876521     12344556655544

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.24  E-value=0.011  Score=55.03  Aligned_cols=104  Identities=16%  Similarity=0.170  Sum_probs=74.5

Q ss_pred             CCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC-CeEEEEecCCCCC-CCCCchhhhee
Q 021344          167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP-FASGFVDAVHA  243 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~-~v~~~~~d~~~lp-~~~~~fD~V~~  243 (314)
                      +.++||.=+|+|-=+...++. ....+|+.-|+|+++++..+++++.++.  .. .+++.+.|+..+- ...+.||+|=.
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence            458999999999766666555 3345899999999999999999998884  33 6888888875532 24678999874


Q ss_pred             cchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                          .-+..|..+|+.+.+.+|.||.|.++...
T Consensus       128 ----DPfGSp~pfldsA~~~v~~gGll~vTaTD  156 (377)
T PF02005_consen  128 ----DPFGSPAPFLDSALQAVKDGGLLCVTATD  156 (377)
T ss_dssp             ------SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred             ----CCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence                33456889999999999999999997643

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK11524 putative methyltransferase; Provisional

Probab=96.19  E-value=0.021  Score=51.20  Aligned_cols=58  Identities=12%  Similarity=0.126  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  212 (314)
                      .++.+.+..... .+|+.|||.=+|+|..+.+..+.+.  +.+|+|+++..++.|++++..
T Consensus       195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence            455555555544 4689999999999999999998876  999999999999999998754

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.18  E-value=0.0096  Score=50.67  Aligned_cols=111  Identities=23%  Similarity=0.286  Sum_probs=76.4

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCC---------CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGT---------YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~---------~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----  232 (314)
                      -.+++|+....|.|++.+.++..         ...+++||+-+-+              .-..|.-+++|+....     
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~GV~qlq~DIT~~stae~I  107 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIEGVIQLQGDITSASTAEAI  107 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccCceEEeecccCCHhHHHHH
Confidence            35799999999999999887631         1239999985421              2367888999997642     


Q ss_pred             ---CCCCchhhheecch-----hccCCCH------HHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHH
Q 021344          233 ---FASGFVDAVHAGAA-----LHCWPSP------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVM  293 (314)
Q Consensus       233 ---~~~~~fD~V~~~~v-----l~h~~d~------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~  293 (314)
                         |..++.|+|+|.++     +|.+..-      ...|.-...+|||||.|+---+...  ..+.....++.++
T Consensus       108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~--~tslLysql~~ff  180 (294)
T KOG1099|consen  108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR--DTSLLYSQLRKFF  180 (294)
T ss_pred             HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC--chHHHHHHHHHHh
Confidence               55678999999654     3433221      2456777789999999987665433  3355555555554

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.09  E-value=0.021  Score=48.77  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (314)
                      +.++++.+.+... .+++.|||.=||+|..+.+..+.+.  +.+|+|+++...+.|++
T Consensus       177 P~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence            4566666666554 4689999999999999999999876  99999999999998874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.09  E-value=0.064  Score=50.21  Aligned_cols=106  Identities=17%  Similarity=0.206  Sum_probs=69.7

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-----CC
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PF  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l-----p~  233 (314)
                      .....++.+||.+|+|. |..+..+++.....+++++|.++...+.+++..         ...++...-.+ .     .+
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~  249 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALREL  249 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHH
Confidence            34456788999999988 888888888753346999999999988887731         12222211110 0     11


Q ss_pred             -CCCchhhheecch-----------hccC----CCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 -ASGFVDAVHAGAA-----------LHCW----PSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 -~~~~fD~V~~~~v-----------l~h~----~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       ....+|+|+-.-.           +.|.    .++...+.++.+.|+++|.+++...
T Consensus       250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence             1235888775321           1222    4556788999999999999988753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.00  E-value=0.058  Score=49.53  Aligned_cols=100  Identities=17%  Similarity=0.200  Sum_probs=62.5

Q ss_pred             cCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCC-eEEEEecCCCCCCCCCchhhh
Q 021344          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCRLPFASGFVDAV  241 (314)
Q Consensus       164 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~-v~~~~~d~~~lp~~~~~fD~V  241 (314)
                      ..++.+||-+|+|. |.++..+++.....+++++|.++..++.+++.    +   ... +.....++.+.....+.+|+|
T Consensus       167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----G---a~~vi~~~~~~~~~~~~~~g~~D~v  239 (343)
T PRK09880        167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----G---ADKLVNPQNDDLDHYKAEKGYFDVS  239 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----C---CcEEecCCcccHHHHhccCCCCCEE
Confidence            34678999999876 77777777764334799999999988888762    1   011 110011111111112347777


Q ss_pred             eecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +-.     ...+ ..++...+.|++||++++....
T Consensus       240 id~-----~G~~-~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        240 FEV-----SGHP-SSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             EEC-----CCCH-HHHHHHHHHhhcCCEEEEEccC
Confidence            643     2333 4578888999999999987643

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.96  E-value=0.045  Score=50.00  Aligned_cols=105  Identities=16%  Similarity=0.208  Sum_probs=79.7

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-CCchhhheecc
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA  245 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~~  245 (314)
                      ..+|||.=+|+|-=+..++...+..+++.-|+|+.+++.++++++.+.   ..+...+..|+..+-.. ...||+|=   
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~ID---  126 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVID---  126 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEe---
Confidence            678999999999887777777665689999999999999999998763   14555565666443211 25677775   


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                       |.=+..|..+++...+.++.||++-++-....
T Consensus       127 -iDPFGSPaPFlDaA~~s~~~~G~l~vTATD~a  158 (380)
T COG1867         127 -IDPFGSPAPFLDAALRSVRRGGLLCVTATDTA  158 (380)
T ss_pred             -cCCCCCCchHHHHHHHHhhcCCEEEEEecccc
Confidence             33445788999999999999999988765443

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.93  E-value=0.022  Score=49.15  Aligned_cols=91  Identities=19%  Similarity=0.140  Sum_probs=52.5

Q ss_pred             HHHHHhccCCC--CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH---HHhcCCC---CCCCeEEEEecC
Q 021344          157 MAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF---IKQDNTI---LTSNLALVRADV  228 (314)
Q Consensus       157 ~l~~~l~~~~~--~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~---~~~~~~~---~~~~v~~~~~d~  228 (314)
                      .+.+....+++  .+|||.-+|-|.-+.-++..|.  +|+++|-|+-.....+.-   .......   ...+++++.+|.
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            45555655544  4899999999999988888775  999999999765555433   3222100   014899999998


Q ss_pred             CC-CCCCCCchhhheecchhcc
Q 021344          229 CR-LPFASGFVDAVHAGAALHC  249 (314)
Q Consensus       229 ~~-lp~~~~~fD~V~~~~vl~h  249 (314)
                      .+ +..++++||+|+..=.+.|
T Consensus       142 ~~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  142 LEYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             CCHCCCHSS--SEEEE--S---
T ss_pred             HHHHhhcCCCCCEEEECCCCCC
Confidence            66 4555789999998655544

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.93  E-value=0.042  Score=52.29  Aligned_cols=107  Identities=9%  Similarity=0.177  Sum_probs=78.4

Q ss_pred             CCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          167 GGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ...|+-+|.|-|-+.....+.    ....+++++|-+|+++...+.+- ...  ...+|+++..|...++.+.++.|+++
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n-~~~--W~~~Vtii~~DMR~w~ap~eq~DI~V  444 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRN-FEC--WDNRVTIISSDMRKWNAPREQADIIV  444 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhc-hhh--hcCeeEEEeccccccCCchhhccchH
Confidence            346899999999876655443    23468999999999988887732 222  35789999999999885568899988


Q ss_pred             ecchhccCCCH---HHHHHHHHhhcccCcEEEEEeccc
Q 021344          243 AGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       243 ~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +- .|.-+.|-   ..-|..+.+.|||+|+.+=..+..
T Consensus       445 SE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtS  481 (649)
T KOG0822|consen  445 SE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTS  481 (649)
T ss_pred             HH-hhccccCccCCHHHHHHHHhhcCCCceEccchhhh
Confidence            62 23333332   356899999999999887666554

>PRK13699 putative methylase; Provisional

Probab=95.85  E-value=0.044  Score=47.45  Aligned_cols=60  Identities=18%  Similarity=0.228  Sum_probs=49.0

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  213 (314)
                      +.++.+.+.+... .+++.|||.=||+|..+.+..+.+.  +++|+|+++...+.+.++++..
T Consensus       149 P~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        149 PVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             cHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHH
Confidence            4555555555444 3688999999999999999988876  9999999999999999988763

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=95.52  E-value=0.0069  Score=36.40  Aligned_cols=35  Identities=20%  Similarity=0.551  Sum_probs=23.5

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (314)
                      ...||.|+..+...+.. +   ......++|+.|++.|.
T Consensus         2 ~i~CP~C~~~f~v~~~~-l---~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    2 IITCPNCQTRFRVPDDK-L---PAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EEECCCCCceEEcCHHH-c---ccCCcEEECCCCCcEee
Confidence            46799999987553321 0   01225799999999874

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.49  E-value=0.032  Score=51.89  Aligned_cols=72  Identities=15%  Similarity=0.325  Sum_probs=56.5

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-CCchhhhee
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHA  243 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~  243 (314)
                      .+||||.|||.++....+.|.+ .|+++|.-..|.+.|++...+.+  ..++|.++.---.++... ....|+++.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng--~SdkI~vInkrStev~vg~~~RadI~v~  141 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNG--MSDKINVINKRSTEVKVGGSSRADIAVR  141 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCC--CccceeeeccccceeeecCcchhhhhhH
Confidence            5899999999999999888854 79999999999999999999888  578888887555444321 223666554

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=95.40  E-value=0.0085  Score=32.88  Aligned_cols=24  Identities=25%  Similarity=0.647  Sum_probs=19.5

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (314)
                      .||.|++....             ..-.|+.||+.|.
T Consensus         2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPE-------------SAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence            59999997744             5688999998873

Several members are annotated as putative helicases.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.38  E-value=0.059  Score=52.02  Aligned_cols=97  Identities=20%  Similarity=0.203  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-------------
Q 021344          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------------  230 (314)
Q Consensus       165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-------------  230 (314)
                      .++.++|-+|+|. |..+..+++.. +..|+++|.++..++.+++.          ..+++..|..+             
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~s  230 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVMS  230 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeecC
Confidence            3568999999998 67666666553 23899999999988877761          22333333211             


Q ss_pred             ----------CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEE
Q 021344          231 ----------LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       231 ----------lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i  272 (314)
                                ++-.-..+|+|+..-.+.--+.|.-+.++..+.+|||++++=
T Consensus       231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence                      110124589998766555555665678888999999998774

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=95.14  E-value=0.011  Score=33.53  Aligned_cols=26  Identities=19%  Similarity=0.649  Sum_probs=14.8

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .||.|+++....+.          ..+.|+.|++.+
T Consensus         4 ~Cp~C~se~~y~D~----------~~~vCp~C~~ew   29 (30)
T PF08274_consen    4 KCPLCGSEYTYEDG----------ELLVCPECGHEW   29 (30)
T ss_dssp             --TTT-----EE-S----------SSEEETTTTEEE
T ss_pred             CCCCCCCcceeccC----------CEEeCCcccccC
Confidence            69999998766553          689999999875

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.10  E-value=0.21  Score=43.92  Aligned_cols=103  Identities=16%  Similarity=0.143  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC---CCchhhhe
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVH  242 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~---~~~fD~V~  242 (314)
                      .++.|+-+| -.-.++.+++-.+-..++..+|+++..+....+.+++.+   ..+++.+..|+.+ |++   .++||+.+
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~-plpe~~~~kFDvfi  226 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRN-PLPEDLKRKFDVFI  226 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcc-cChHHHHhhCCeee
Confidence            577899999 555566666666655699999999999999999888876   3679999999876 444   35799877


Q ss_pred             ecchhccCCCHHHHHHHHHhhcccC---cEEEEEe
Q 021344          243 AGAALHCWPSPSNAVAEISRILRSG---GVFVGTT  274 (314)
Q Consensus       243 ~~~vl~h~~d~~~~l~~i~r~LkpG---G~l~i~~  274 (314)
                      ..- -+.++-...++..=...||.-   |++.++.
T Consensus       227 TDP-peTi~alk~FlgRGI~tLkg~~~aGyfgiT~  260 (354)
T COG1568         227 TDP-PETIKALKLFLGRGIATLKGEGCAGYFGITR  260 (354)
T ss_pred             cCc-hhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence            421 111111224444445566654   7787766

>PRK00420 hypothetical protein; Validated

Probab=95.06  E-value=0.013  Score=44.36  Aligned_cols=31  Identities=29%  Similarity=0.539  Sum_probs=23.2

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccccCcc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (314)
                      -.||.||.++.....          +...|+.||..+...+
T Consensus        24 ~~CP~Cg~pLf~lk~----------g~~~Cp~Cg~~~~v~~   54 (112)
T PRK00420         24 KHCPVCGLPLFELKD----------GEVVCPVHGKVYIVKS   54 (112)
T ss_pred             CCCCCCCCcceecCC----------CceECCCCCCeeeecc
Confidence            469999999876221          6899999998764443

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=94.97  E-value=0.035  Score=48.84  Aligned_cols=46  Identities=11%  Similarity=0.146  Sum_probs=35.5

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHHh
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQ  212 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~--------~~~v~giD~s~~~~~~a~~~~~~  212 (314)
                      .-+|+|+|.|+|.++..+.+...        ..+++-+|+|+...+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            46899999999999888877532        35899999999988888887765

; PDB: 4F3N_A 1ZKD_B.

>PHA01634 hypothetical protein

Probab=94.92  E-value=0.08  Score=40.99  Aligned_cols=47  Identities=17%  Similarity=0.073  Sum_probs=41.7

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  213 (314)
                      .+++|+|||.+-|..+.+++.+|. ..|+++++++...+..++..+..
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhh
Confidence            578999999999999999999984 58999999999999998877653

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.80  E-value=0.31  Score=44.11  Aligned_cols=96  Identities=18%  Similarity=0.223  Sum_probs=62.3

Q ss_pred             ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC------CCCC
Q 021344          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFAS  235 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l------p~~~  235 (314)
                      ...++.+||..|+|. |..+..+++.. +.++++++.++...+.+++.          .+..+..+-...      ....
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~  230 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL----------GADEVLNSLDDSPKDKKAAGLG  230 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----------CCCEEEcCCCcCHHHHHHHhcC
Confidence            355678898888774 77877777764 34799999999888877551          122222211111      1123


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +.+|+|+....      ....++++.+.|+++|.++....
T Consensus       231 ~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         231 GGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             CCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence            46887764321      13468889999999999988754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=94.75  E-value=0.018  Score=34.38  Aligned_cols=34  Identities=18%  Similarity=0.484  Sum_probs=22.8

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .+.||.|+......+...    ......++|..|++.|
T Consensus         2 ~i~Cp~C~~~y~i~d~~i----p~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    2 IITCPNCQAKYEIDDEKI----PPKGRKVRCSKCGHVF   35 (36)
T ss_pred             EEECCCCCCEEeCCHHHC----CCCCcEEECCCCCCEe
Confidence            468999999875543210    0111468999999987

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.73  E-value=0.016  Score=36.05  Aligned_cols=29  Identities=24%  Similarity=0.476  Sum_probs=20.0

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      +.||.|++.....+        ...+.+.|..||.+.
T Consensus         1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl   29 (43)
T PF08271_consen    1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVL   29 (43)
T ss_dssp             ESBTTTSSSEEEEE--------TTTTEEEETTT-BBE
T ss_pred             CCCcCCcCCceEEc--------CCCCeEECCCCCCEe
Confidence            57999999764322        233788999998664

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=94.64  E-value=0.48  Score=41.12  Aligned_cols=114  Identities=21%  Similarity=0.219  Sum_probs=76.5

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----CCC
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPF  233 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----lp~  233 (314)
                      .....+.+++|+|.|+..-++.+.+.    +.-.+++.+|+|...++...+.+....  ..-.+.-+++|.+.    +| 
T Consensus        74 a~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y--~~l~v~~l~~~~~~~La~~~-  150 (321)
T COG4301          74 ASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY--PGLEVNALCGDYELALAELP-  150 (321)
T ss_pred             HHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC--CCCeEeehhhhHHHHHhccc-
Confidence            33445778999999998766666554    444689999999998877666555543  23566777777642    23 


Q ss_pred             CCCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEecccC
Q 021344          234 ASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ..++==.++....|.++..  -..+|.++...|+||-++++-+-..+
T Consensus       151 ~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k  197 (321)
T COG4301         151 RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK  197 (321)
T ss_pred             CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence            1122223444555666642  24799999999999999988665543

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.60  E-value=0.21  Score=45.81  Aligned_cols=96  Identities=15%  Similarity=0.108  Sum_probs=60.0

Q ss_pred             cCCCCeEEEEcCcc-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhh
Q 021344          164 SAQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (314)
Q Consensus       164 ~~~~~~iLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V  241 (314)
                      ..++.+||-+|+|. |.++..+++. ....+++++|.++..++.+++ +   +     .. ... +  .+. ....+|+|
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~-----~~-~~~-~--~~~-~~~g~d~v  226 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D-----ET-YLI-D--DIP-EDLAVDHA  226 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C-----ce-eeh-h--hhh-hccCCcEE
Confidence            35688999999987 7676666654 323489999999988887764 1   1     11 111 1  111 11247877


Q ss_pred             eecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +-.-.  . ......+.+..++|++||++++....
T Consensus       227 iD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~~  258 (341)
T cd08237         227 FECVG--G-RGSQSAINQIIDYIRPQGTIGLMGVS  258 (341)
T ss_pred             EECCC--C-CccHHHHHHHHHhCcCCcEEEEEeec
Confidence            64221  0 00234688889999999999887643

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=94.56  E-value=0.22  Score=44.73  Aligned_cols=109  Identities=12%  Similarity=0.085  Sum_probs=75.6

Q ss_pred             CCeEEEEcCcccHHHHHHHHhC--------------------CCCeEEEEeCCH--HHHHHHHHHHHhc-----------
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSG--------------------TYSGVVALDFSE--NMLRQCYDFIKQD-----------  213 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~--------------------~~~~v~giD~s~--~~~~~a~~~~~~~-----------  213 (314)
                      ..+||-||.|.|.-..+++...                    +...++.||+.+  ..+......+...           
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            3689999999987655555443                    113899999975  4555555554443           


Q ss_pred             -C--CCCCCCeEEEEecCCCCCCC-------CCchhhheecchhcc-----CCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          214 -N--TILTSNLALVRADVCRLPFA-------SGFVDAVHAGAALHC-----WPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       214 -~--~~~~~~v~~~~~d~~~lp~~-------~~~fD~V~~~~vl~h-----~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       .  .....++.|.+.|+..+..+       ..+.|+|+..+.++-     +....++|..+...++||..|+|++.
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS  243 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS  243 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence             0  01235789999998776532       135799998877653     34556899999999999999998774

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.53  E-value=0.23  Score=44.94  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      ++.++|-+|+|. |.++..+++......++++|.++..++.+...            ..+  |..+.  ....+|+|+-.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~------------~~i--~~~~~--~~~g~Dvvid~  207 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY------------EVL--DPEKD--PRRDYRAIYDA  207 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc------------ccc--Chhhc--cCCCCCEEEEC
Confidence            467899999886 88888887764333577889888776655431            011  11110  12458887754


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      -.     . ...++.+.+.|++||++++....
T Consensus       208 ~G-----~-~~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       208 SG-----D-PSLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             CC-----C-HHHHHHHHHhhhcCcEEEEEeec
Confidence            22     2 24578888999999999987643

>KOG1088 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.49  E-value=0.018  Score=43.28  Aligned_cols=28  Identities=7%  Similarity=0.312  Sum_probs=24.6

Q ss_pred             ccccCceecCCCCccccCccceeeeecc
Q 021344           82 AIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (314)
Q Consensus        82 ~i~~~~l~C~~C~~~~~~~~g~~~~~~~  109 (314)
                      .+.++.+.|+.||+.|++.+|+++.+..
T Consensus        93 ~v~EG~l~CpetG~vfpI~~GIPNMLL~  120 (124)
T KOG1088|consen   93 DVIEGELVCPETGRVFPISDGIPNMLLS  120 (124)
T ss_pred             hhccceEecCCCCcEeecccCCcccccC
Confidence            4567899999999999999999998753

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=94.47  E-value=0.032  Score=50.41  Aligned_cols=83  Identities=20%  Similarity=0.201  Sum_probs=64.1

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHH-------HHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ-------CYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~-------a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      +.+.....+|+.|+|-=-|||.++...+..|.  -|+|.||+-.+++.       .+.++++.+. ...-+.++.+|...
T Consensus       200 ~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~-~~~fldvl~~D~sn  276 (421)
T KOG2671|consen  200 MANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGS-SSQFLDVLTADFSN  276 (421)
T ss_pred             HhhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCC-cchhhheeeecccC
Confidence            34455667899999999999999999998877  99999999988872       3456666552 22346788899988


Q ss_pred             CCCC-CCchhhhee
Q 021344          231 LPFA-SGFVDAVHA  243 (314)
Q Consensus       231 lp~~-~~~fD~V~~  243 (314)
                      -|+. ...||.|+|
T Consensus       277 ~~~rsn~~fDaIvc  290 (421)
T KOG2671|consen  277 PPLRSNLKFDAIVC  290 (421)
T ss_pred             cchhhcceeeEEEe
Confidence            7755 447999998

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.45  E-value=0.25  Score=45.56  Aligned_cols=96  Identities=14%  Similarity=0.078  Sum_probs=59.7

Q ss_pred             cCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeC---CHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCc
Q 021344          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDF---SENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGF  237 (314)
Q Consensus       164 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~---s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~  237 (314)
                      ..++.+||-+|+|. |.++..+++.. ..++++++.   ++...+.+++.          ....+...-.+.  ....+.
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----------Ga~~v~~~~~~~~~~~~~~~  238 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----------GATYVNSSKTPVAEVKLVGE  238 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----------CCEEecCCccchhhhhhcCC
Confidence            34678999999986 77777777764 338999986   67777766651          222221110110  001235


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +|+|+-.-     ..+ ..+.+..+.|++||.+++....
T Consensus       239 ~d~vid~~-----g~~-~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         239 FDLIIEAT-----GVP-PLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             CCEEEECc-----CCH-HHHHHHHHHccCCcEEEEEecC
Confidence            77776532     222 3678889999999999876643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.43  E-value=0.056  Score=47.69  Aligned_cols=105  Identities=16%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-------HH---HhcCCCCCCCeEEEEecCCCCCC-C
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD-------FI---KQDNTILTSNLALVRADVCRLPF-A  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~-------~~---~~~~~~~~~~v~~~~~d~~~lp~-~  234 (314)
                      .+++|||+|||.|.-...+...+. ..+...|++...++...-       .+   ..+   ...-.........+.-+ .
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e---~~~~~~i~~s~l~dg~~~~  191 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKE---NHKVDEILNSLLSDGVFNH  191 (282)
T ss_pred             cCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhh---cccceeccccccccchhhh
Confidence            578999999999998888777762 488888888876632111       00   000   00111222220001110 1


Q ss_pred             CC--chhhheecchhccCCCHHHH-HHHHHhhcccCcEEEEEe
Q 021344          235 SG--FVDAVHAGAALHCWPSPSNA-VAEISRILRSGGVFVGTT  274 (314)
Q Consensus       235 ~~--~fD~V~~~~vl~h~~d~~~~-l~~i~r~LkpGG~l~i~~  274 (314)
                      .+  .||+|.++..+....+...+ ......+++++|++++..
T Consensus       192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA  234 (282)
T KOG2920|consen  192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA  234 (282)
T ss_pred             ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence            12  79999998888777666655 566667888999887754

>PHA00626 hypothetical protein

Probab=94.42  E-value=0.026  Score=36.57  Aligned_cols=33  Identities=27%  Similarity=0.485  Sum_probs=21.1

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      +.||.||+..+..-..    -...++.+.|+.||..|
T Consensus         1 m~CP~CGS~~Ivrcg~----cr~~snrYkCkdCGY~f   33 (59)
T PHA00626          1 MSCPKCGSGNIAKEKT----MRGWSDDYVCCDCGYND   33 (59)
T ss_pred             CCCCCCCCceeeeece----ecccCcceEcCCCCCee
Confidence            3599999964332110    11124789999999887

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=94.38  E-value=0.51  Score=44.08  Aligned_cols=137  Identities=16%  Similarity=0.131  Sum_probs=78.3

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccH----HHHHHHHhC---CCCeEEEEeC----CHHHHHHHHHHHHhcCCCCCCCeEEE
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGL----FSRKFAKSG---TYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALV  224 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~----~~~~l~~~~---~~~~v~giD~----s~~~~~~a~~~~~~~~~~~~~~v~~~  224 (314)
                      ..|.+.+...+.-.|+|+|.|.|.    +...|+.+.   |..++|||+.    +...++.+.+++.+..-...-.++|.
T Consensus       100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~  179 (374)
T PF03514_consen  100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH  179 (374)
T ss_pred             HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence            345555555566789999999996    455555542   4568999999    77777777776655320011233443


Q ss_pred             Ee---cCCCC-----CCCCCchhhheecchhccCCC-------HH-HHHHHHHhhcccCcEEEEEecccCCCCCccchHH
Q 021344          225 RA---DVCRL-----PFASGFVDAVHAGAALHCWPS-------PS-NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV  288 (314)
Q Consensus       225 ~~---d~~~l-----p~~~~~fD~V~~~~vl~h~~d-------~~-~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~  288 (314)
                      ..   +.+.+     ...++.+=+|-+...|||+.+       |. .+|+ ..+.|+|.-++++..- ......+|..++
T Consensus       180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~e-a~~n~~~F~~RF  257 (374)
T PF03514_consen  180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQE-ADHNSPSFLERF  257 (374)
T ss_pred             ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeec-CCCCCCchHHHH
Confidence            32   22222     122233334446677888862       22 3554 4557899966655443 333344566666


Q ss_pred             HHHHHH
Q 021344          289 LREVML  294 (314)
Q Consensus       289 l~~~~~  294 (314)
                      .+.+.|
T Consensus       258 ~eal~y  263 (374)
T PF03514_consen  258 REALHY  263 (374)
T ss_pred             HHHHHH
Confidence            555543

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=94.34  E-value=0.029  Score=38.99  Aligned_cols=50  Identities=18%  Similarity=0.461  Sum_probs=34.0

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecC--CCCccccCccceeeeeccc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS  110 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~--~C~~~~~~~~g~~~~~~~~  110 (314)
                      ++.||.||+..........+ +...+.+..|.  .||+.|...+.+...+...
T Consensus         1 mm~CP~Cg~~a~irtSr~~s-~~~~~~Y~qC~N~eCg~tF~t~es~s~tis~p   52 (72)
T PRK09678          1 MFHCPLCQHAAHARTSRYIT-DTTKERYHQCQNVNCSATFITYESVQRYIVKP   52 (72)
T ss_pred             CccCCCCCCccEEEEChhcC-hhhheeeeecCCCCCCCEEEEEEEEEEEEcCC
Confidence            57899999976333322222 23555688898  9999998877777766543

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.27  E-value=0.56  Score=41.69  Aligned_cols=96  Identities=22%  Similarity=0.141  Sum_probs=60.1

Q ss_pred             ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----C-CC
Q 021344          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS  235 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~-~~  235 (314)
                      ...++.+||-+|+|. |..+..+++.....+++++|.++...+.+++.    +      ...+. +.....     . ..
T Consensus       117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----G------a~~~i-~~~~~~~~~~~~~~~  185 (280)
T TIGR03366       117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----G------ATALA-EPEVLAERQGGLQNG  185 (280)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C------CcEec-CchhhHHHHHHHhCC
Confidence            334688999999876 77777777764233599999999888877762    1      11111 111100     0 12


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ..+|+|+-.     ... ...++...+.|+++|++++...
T Consensus       186 ~g~d~vid~-----~G~-~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       186 RGVDVALEF-----SGA-TAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CCCCEEEEC-----CCC-hHHHHHHHHHhcCCCEEEEecc
Confidence            347777642     222 3457888999999999988764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.25  E-value=0.51  Score=43.09  Aligned_cols=94  Identities=17%  Similarity=0.094  Sum_probs=60.7

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhh
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~  240 (314)
                      ....++.+||-.|+|. |.++..+++.. +.++++++.++...+.+++.    |      .+.+. |..+.  ..+.+|+
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~----G------a~~vi-~~~~~--~~~~~d~  226 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL----G------AASAG-GAYDT--PPEPLDA  226 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh----C------Cceec-ccccc--CcccceE
Confidence            4556788999999865 66666666664 34899999999888877762    1      11111 11111  1235786


Q ss_pred             heecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++....     .. ..+....+.|++||++++...
T Consensus       227 ~i~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       227 AILFAP-----AG-GLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             EEECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence            553222     22 368888899999999988765

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.22  E-value=0.14  Score=43.78  Aligned_cols=99  Identities=15%  Similarity=0.184  Sum_probs=64.8

Q ss_pred             CCCchHHHHHHHHHhccC------CCCeEEEEcCcccHH--HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q 021344          148 FPGPDEEFKMAQEYFKSA------QGGLLVDVSCGSGLF--SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS  219 (314)
Q Consensus       148 ~~~~~~~~~~l~~~l~~~------~~~~iLDiGcG~G~~--~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~  219 (314)
                      .|+....+.++.+++...      ++.++||||.|.-..  +.-..+.++  +.+|.|+++..++.|+..+..+.. ...
T Consensus        54 vPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N~~-l~~  130 (292)
T COG3129          54 VPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISANPG-LER  130 (292)
T ss_pred             CCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcCcc-hhh
Confidence            466667777777777532      445789999887542  222344455  999999999999999998887621 234


Q ss_pred             CeEEEEecCCC-----CCCCCCchhhheecchhcc
Q 021344          220 NLALVRADVCR-----LPFASGFVDAVHAGAALHC  249 (314)
Q Consensus       220 ~v~~~~~d~~~-----lp~~~~~fD~V~~~~vl~h  249 (314)
                      .+++....-.+     +--.++.||+++|+--+|-
T Consensus       131 ~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~  165 (292)
T COG3129         131 AIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD  165 (292)
T ss_pred             heeEEeccCccccccccccccceeeeEecCCCcch
Confidence            45555433222     1122678999999866653

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=94.15  E-value=0.35  Score=48.79  Aligned_cols=109  Identities=11%  Similarity=0.035  Sum_probs=60.7

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHH-HHHHHHhcCCCCCCCeEEEEecC---CCCCCCCCchhhhe
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ-CYDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVH  242 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~-a~~~~~~~~~~~~~~v~~~~~d~---~~lp~~~~~fD~V~  242 (314)
                      +..+.-+|.|+=.....+.+.+|+.+++-+|-+...-.. .+..+....   .....++.+.=   ....|++=+-=.|+
T Consensus       483 s~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~---~ge~dILiGTQmiaKG~~fp~vtLVgvl  559 (730)
T COG1198         483 SEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFA---NGEADILIGTQMIAKGHDFPNVTLVGVL  559 (730)
T ss_pred             CCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHh---CCCCCeeecchhhhcCCCcccceEEEEE
Confidence            346888999999999999999999999999987655332 222222221   23445555442   11223332222344


Q ss_pred             ecchhccCCCHH---HHHHHHHhh---cc---cCcEEEEEecccC
Q 021344          243 AGAALHCWPSPS---NAVAEISRI---LR---SGGVFVGTTFLRY  278 (314)
Q Consensus       243 ~~~vl~h~~d~~---~~l~~i~r~---Lk---pGG~l~i~~~~~~  278 (314)
                      ..+..-+.+|..   .+++-+..+   ..   .-|.+++.|+...
T Consensus       560 ~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~  604 (730)
T COG1198         560 DADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD  604 (730)
T ss_pred             echhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence            445555666653   333333322   22   2356777776654

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.98  E-value=0.043  Score=51.86  Aligned_cols=105  Identities=22%  Similarity=0.301  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCCCchh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD  239 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p~~~~~fD  239 (314)
                      .++.+|||.=|++|.-+...++..+ -.++++-|.+++.+...+++++..+  ....++....|+..+    +-....||
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~--v~~ive~~~~DA~~lM~~~~~~~~~FD  185 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG--VEDIVEPHHSDANVLMYEHPMVAKFFD  185 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC--chhhcccccchHHHHHHhccccccccc
Confidence            3567899999999987766666633 3579999999999999999888765  345566667776432    33356899


Q ss_pred             hheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +|-.    .-+..+..+|+.+.+.++.||.|.++..
T Consensus       186 vIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  186 VIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             eEec----CCCCCccHHHHHHHHHhhcCCEEEEEec
Confidence            8874    3345678899999999999999998664

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=93.97  E-value=0.22  Score=41.43  Aligned_cols=112  Identities=14%  Similarity=0.106  Sum_probs=72.4

Q ss_pred             HHHhccCCCCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+++-..++..|+++|.-.|..+..++..    |...+|+++|++-..+..+..        ...+|.|+.++-.+....
T Consensus        62 Qellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~--------e~p~i~f~egss~dpai~  133 (237)
T COG3510          62 QELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR--------EVPDILFIEGSSTDPAIA  133 (237)
T ss_pred             HHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh--------cCCCeEEEeCCCCCHHHH
Confidence            33444456779999999998766655543    545699999998766444433        137899999997664211


Q ss_pred             ------CCchhhhe-ecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          235 ------SGFVDAVH-AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       235 ------~~~fD~V~-~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                            .+.+--|+ +-..-||.....+.|+-+.++|..|-++++.+..-.
T Consensus       134 eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~  184 (237)
T COG3510         134 EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVN  184 (237)
T ss_pred             HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccccc
Confidence                  11222343 333334443445667778889999999999775543

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=93.96  E-value=0.074  Score=34.74  Aligned_cols=32  Identities=22%  Similarity=0.565  Sum_probs=23.4

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (314)
                      .+.||.|++.+...+..      . -..+.|+.||..+-
T Consensus         2 ~~~CP~CG~~iev~~~~------~-GeiV~Cp~CGaele   33 (54)
T TIGR01206         2 QFECPDCGAEIELENPE------L-GELVICDECGAELE   33 (54)
T ss_pred             ccCCCCCCCEEecCCCc------c-CCEEeCCCCCCEEE
Confidence            46899999988664321      1 24789999999883

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=93.91  E-value=0.032  Score=39.73  Aligned_cols=30  Identities=27%  Similarity=0.704  Sum_probs=22.3

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ...+||.|+.+-....         ..+++.|..||..|
T Consensus        34 ~~~~Cp~C~~~~VkR~---------a~GIW~C~kCg~~f   63 (89)
T COG1997          34 AKHVCPFCGRTTVKRI---------ATGIWKCRKCGAKF   63 (89)
T ss_pred             cCCcCCCCCCcceeee---------ccCeEEcCCCCCee
Confidence            3567999999843322         33799999999887

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=93.90  E-value=0.033  Score=32.69  Aligned_cols=29  Identities=38%  Similarity=0.751  Sum_probs=15.2

Q ss_pred             ccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        63 CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      ||.||+++....+.+     -.+.-+.|++||.+
T Consensus         3 C~~CG~~l~~~ip~g-----d~r~R~vC~~Cg~I   31 (34)
T PF14803_consen    3 CPQCGGPLERRIPEG-----DDRERLVCPACGFI   31 (34)
T ss_dssp             -TTT--B-EEE--TT------SS-EEEETTTTEE
T ss_pred             cccccChhhhhcCCC-----CCccceECCCCCCE
Confidence            999999986644321     12357899999765

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=93.82  E-value=0.22  Score=38.45  Aligned_cols=84  Identities=27%  Similarity=0.281  Sum_probs=58.3

Q ss_pred             cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-------C-CCCCchhhheecchh
Q 021344          176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-------P-FASGFVDAVHAGAAL  247 (314)
Q Consensus       176 G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-------p-~~~~~fD~V~~~~vl  247 (314)
                      |.|.++..+++... .+|+++|.++..++.+++.          ....+. |..+.       . .....+|+|+-.-  
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----------Ga~~~~-~~~~~~~~~~i~~~~~~~~~d~vid~~--   66 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----------GADHVI-DYSDDDFVEQIRELTGGRGVDVVIDCV--   66 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----------TESEEE-ETTTSSHHHHHHHHTTTSSEEEEEESS--
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----------cccccc-cccccccccccccccccccceEEEEec--
Confidence            46888888888754 7999999999999998872          222222 22221       1 1224688887532  


Q ss_pred             ccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          248 HCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       248 ~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                         .. ...++....+|++||.+++.....
T Consensus        67 ---g~-~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   67 ---GS-GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             ---SS-HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             ---Cc-HHHHHHHHHHhccCCEEEEEEccC
Confidence               22 467899999999999999988665

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.81  E-value=0.6  Score=44.10  Aligned_cols=101  Identities=9%  Similarity=-0.011  Sum_probs=62.5

Q ss_pred             HHHHHHHHhcc-CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          154 EFKMAQEYFKS-AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       154 ~~~~l~~~l~~-~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .++.+.+..+. .++++|+-+|+|. |......++.. +.+|+++|.++.....|++          ..+..+.  ..+.
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----------~G~~~~~--~~e~  254 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----------EGYEVMT--MEEA  254 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----------cCCEEcc--HHHH
Confidence            33444444332 4688999999998 77666555543 3389999999988777765          2222221  1111


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         -..+|+|+..     ...+..+-.+..+.+|+||+++....
T Consensus       255 ---v~~aDVVI~a-----tG~~~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         255 ---VKEGDIFVTT-----TGNKDIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             ---HcCCCEEEEC-----CCCHHHHHHHHHhcCCCCcEEEEeCC
Confidence               1246888753     22343333345889999999988773

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=93.71  E-value=0.018  Score=43.44  Aligned_cols=38  Identities=16%  Similarity=0.195  Sum_probs=28.1

Q ss_pred             chhhheecchhccCC----C--HHHHHHHHHhhcccCcEEEEEe
Q 021344          237 FVDAVHAGAALHCWP----S--PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~----d--~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +||+|+|..|.-++.    |  ...+++.+++.|+|||.+++.-
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence            489999987754432    2  2479999999999999999965

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=93.65  E-value=0.25  Score=45.42  Aligned_cols=52  Identities=19%  Similarity=0.187  Sum_probs=39.7

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (314)
                      +.+.+..+...-..++|+|.|.|.+++.+.-.+ +..|.+||-|....+.|++
T Consensus       143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence            334444444556789999999999999888765 5699999999877777655

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.51  E-value=0.68  Score=42.96  Aligned_cols=100  Identities=26%  Similarity=0.196  Sum_probs=61.5

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCC
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFA  234 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~~  234 (314)
                      .....++.+||-.|+|. |.++..+++.....+|+++|.++...+.+++.    +    . ..++..+-.+.     ...
T Consensus       186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----G----a-~~~i~~~~~~~~~~i~~~~  256 (371)
T cd08281         186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----G----A-TATVNAGDPNAVEQVRELT  256 (371)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----C----C-ceEeCCCchhHHHHHHHHh
Confidence            34456788999999876 77777777764223699999999988888652    1    1 11111111110     011


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .+.+|+|+-.     ... ...+....+.|++||.+++...
T Consensus       257 ~~g~d~vid~-----~G~-~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         257 GGGVDYAFEM-----AGS-VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCCCCEEEEC-----CCC-hHHHHHHHHHHhcCCEEEEEcc
Confidence            2257777642     222 2457788899999999987654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=93.51  E-value=0.037  Score=42.95  Aligned_cols=26  Identities=35%  Similarity=0.685  Sum_probs=21.4

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ..||.||.+|...+           |.+.|+.|++..
T Consensus        29 ~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~~   54 (131)
T COG1645          29 KHCPKCGTPLFRKD-----------GEVFCPVCGYRE   54 (131)
T ss_pred             hhCcccCCcceeeC-----------CeEECCCCCceE
Confidence            45999999998744           789999999654

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.48  E-value=0.92  Score=41.82  Aligned_cols=99  Identities=16%  Similarity=0.119  Sum_probs=61.6

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CC-C
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PF-A  234 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~-~  234 (314)
                      ....++.+||-.|+|. |..+..+++.....+|+++|.++...+.+++.    +    . -.++...-.+.     .. .
T Consensus       172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----G----a-~~~i~~~~~~~~~~i~~~~~  242 (358)
T TIGR03451       172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----G----A-THTVNSSGTDPVEAIRALTG  242 (358)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----C-ceEEcCCCcCHHHHHHHHhC
Confidence            3456788999999876 77777777764323599999999888888652    1    1 11221111110     01 1


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ...+|+|+-.     ...+ ..+....+.|++||++++...
T Consensus       243 ~~g~d~vid~-----~g~~-~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       243 GFGADVVIDA-----VGRP-ETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCCCEEEEC-----CCCH-HHHHHHHHHhccCCEEEEECC
Confidence            2347777632     2333 357778889999999988664

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=93.44  E-value=0.16  Score=45.27  Aligned_cols=67  Identities=18%  Similarity=0.233  Sum_probs=51.1

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC--CCchhhheecc
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGA  245 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~--~~~fD~V~~~~  245 (314)
                      +++|+-||.|.+...+...|. ..+.++|+++.+++..+.+...         ..+.+|+.++...  ...+|+++...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~---------~~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPN---------KLIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCC---------CCccCccccCchhhcCCCCCEEEeCC
Confidence            689999999999999988874 4688999999999888876421         1566777765432  34699998754

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=93.39  E-value=0.87  Score=36.31  Aligned_cols=93  Identities=17%  Similarity=0.142  Sum_probs=48.0

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHH----------------HHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENM----------------LRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~----------------~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .+-|||+|=|+|+.-.+|.+..++.+++++|-.-..                -+.... +...+    ..+.++++|+-.
T Consensus        29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~-~~~~g----~~a~laHaD~G~  103 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPA-LARFG----AGAALAHADIGT  103 (160)
T ss_dssp             -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHH-HHHH-----S-EEEEEE----
T ss_pred             CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHH-HHhcC----CceEEEEeecCC
Confidence            468999999999999999999999999999963221                111111 22222    455666666532


Q ss_pred             CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      -   +..-|+++..+          +-.-+..+|.|||+++-..+..
T Consensus       104 g---~~~~d~a~a~~----------lspli~~~la~gGi~vS~~pl~  137 (160)
T PF12692_consen  104 G---DKEKDDATAAW----------LSPLIAPVLAPGGIMVSGQPLY  137 (160)
T ss_dssp             S----HHHHHHHHHH----------HHHHHGGGEEEEEEEEESS---
T ss_pred             C---CcchhHHHHHh----------hhHHHHHHhcCCcEEEeCCccc
Confidence            1   22234444332          2344668899999998766443

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=93.36  E-value=0.12  Score=48.64  Aligned_cols=111  Identities=23%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             CCCCeEEEEcCcccH--HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cC--CCCCCC-CCch
Q 021344          165 AQGGLLVDVSCGSGL--FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV--CRLPFA-SGFV  238 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~--~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~--~~lp~~-~~~f  238 (314)
                      .....++|+|.|.|.  ++....-......+..||.+..|.....+......   ..+-.++.. -+  ..+|.. .+.|
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~---~~g~~~v~~~~~~r~~~pi~~~~~y  275 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS---HIGEPIVRKLVFHRQRLPIDIKNGY  275 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh---hcCchhccccchhcccCCCCcccce
Confidence            345678899988765  33333333445589999999999998888776511   011111111 11  124433 3459


Q ss_pred             hhheecchhccCCCHH---HHHHHH-HhhcccCcEEEEEecccC
Q 021344          239 DAVHAGAALHCWPSPS---NAVAEI-SRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~---~~l~~i-~r~LkpGG~l~i~~~~~~  278 (314)
                      |+|++.+.++++.+..   ...+++ .+..++||.+++...+..
T Consensus       276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~  319 (491)
T KOG2539|consen  276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT  319 (491)
T ss_pred             eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence            9999999999998764   233333 345678999998886543

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.35  E-value=0.11  Score=49.29  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=80.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-------CCCCCCch
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------LPFASGFV  238 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-------lp~~~~~f  238 (314)
                      .+..+|-+|-|.|.+...+....+...++++++++.+++.|++++....   ..+......|..+       ..-.+..|
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~  371 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICP  371 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCC
Confidence            4668999999999999999988888899999999999999998775532   2233333334321       11135579


Q ss_pred             hhheec----chhccCCCH------HHHHHHHHhhcccCcEEEEEecccCCCCCc
Q 021344          239 DAVHAG----AALHCWPSP------SNAVAEISRILRSGGVFVGTTFLRYTSSTS  283 (314)
Q Consensus       239 D~V~~~----~vl~h~~d~------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~  283 (314)
                      |+++..    . .|-+..|      ..+|..+...|.|.|.+++....+.....+
T Consensus       372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~  425 (482)
T KOG2352|consen  372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKD  425 (482)
T ss_pred             cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhH
Confidence            988752    2 2333322      367888999999999999988777544433

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=93.34  E-value=0.047  Score=41.26  Aligned_cols=29  Identities=21%  Similarity=0.634  Sum_probs=23.2

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCCCCccccCc
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (314)
                      +||.||..++-..-          ....|+.||..|+..
T Consensus        11 ~Cp~CG~kFYDLnk----------~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   11 TCPSCGAKFYDLNK----------DPIVCPKCGTEFPPE   39 (108)
T ss_pred             cCCCCcchhccCCC----------CCccCCCCCCccCcc
Confidence            59999999865442          468899999999665

The function of members of this family is unknown.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=93.33  E-value=0.076  Score=33.49  Aligned_cols=30  Identities=17%  Similarity=0.438  Sum_probs=22.4

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ..+.||.||..+......         ..++|+.||..+
T Consensus         2 ~~y~C~~CG~~~~~~~~~---------~~~~Cp~CG~~~   31 (46)
T PRK00398          2 AEYKCARCGREVELDEYG---------TGVRCPYCGYRI   31 (46)
T ss_pred             CEEECCCCCCEEEECCCC---------CceECCCCCCeE
Confidence            468899999988664321         278999998765

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.23  E-value=0.38  Score=44.09  Aligned_cols=51  Identities=12%  Similarity=0.133  Sum_probs=39.7

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSG--------TYSGVVALDFSENMLRQCYDFIKQD  213 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~--------~~~~v~giD~s~~~~~~a~~~~~~~  213 (314)
                      .....-.++++|.|.|.++..+++..        ...++.-||+|+...+.=++.++..
T Consensus        74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            33345689999999999988877652        2568999999999888777777654

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=93.19  E-value=0.041  Score=33.13  Aligned_cols=35  Identities=17%  Similarity=0.425  Sum_probs=22.0

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (314)
                      .+.||.|++.........    ......++|++||+.|.
T Consensus         2 ~~~CP~C~~~~~v~~~~~----~~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         2 RIQCPNCKTSFRVVDSQL----GANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EEECCCCCCEEEeCHHHc----CCCCCEEECCCCCCEEE
Confidence            368999999765432110    00113689999998763

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>TIGR00595 priA primosomal protein N'

Probab=93.00  E-value=1.8  Score=42.16  Aligned_cols=34  Identities=18%  Similarity=0.102  Sum_probs=25.6

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCH
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE  200 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~  200 (314)
                      +..+--.|.|+=.....+.+.+++..+..+|-+.
T Consensus       261 s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~  294 (505)
T TIGR00595       261 SEDLVYKGYGTEQVEEELAKLFPGARIARIDSDT  294 (505)
T ss_pred             CCeeEeecccHHHHHHHHHhhCCCCcEEEEeccc
Confidence            3456778888888888888887777888887653

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[]

Probab=92.94  E-value=0.059  Score=32.09  Aligned_cols=28  Identities=18%  Similarity=0.530  Sum_probs=21.0

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      ....|++|++.....+          .+.+.|..||+.
T Consensus         7 ~~~~C~~C~~~~~~~~----------dG~~yC~~cG~~   34 (36)
T PF11781_consen    7 PNEPCPVCGSRWFYSD----------DGFYYCDRCGHQ   34 (36)
T ss_pred             CCCcCCCCCCeEeEcc----------CCEEEhhhCceE
Confidence            4456999999854433          289999999976

>PRK14873 primosome assembly protein PriA; Provisional

Probab=92.82  E-value=0.56  Score=47.13  Aligned_cols=96  Identities=18%  Similarity=0.074  Sum_probs=56.7

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec--
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG--  244 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~--  244 (314)
                      +..+.-.|-|+-.....+.+.+++..|.-+|-+. .++    .+.       ....++.+.-...|.-.+.+.+|...  
T Consensus       430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~----~~~-------~~~~IlVGTqgaepm~~g~~~lV~ilda  497 (665)
T PRK14873        430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVD----TVD-------AGPALVVATPGAEPRVEGGYGAALLLDA  497 (665)
T ss_pred             CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHH----hhc-------cCCCEEEECCCCcccccCCceEEEEEcc
Confidence            4457888999999999999999888898888542 221    111       24566766632233333456655432  


Q ss_pred             chhccCCCH---HHHHHHHHhh---c---ccCcEEEEEe
Q 021344          245 AALHCWPSP---SNAVAEISRI---L---RSGGVFVGTT  274 (314)
Q Consensus       245 ~vl~h~~d~---~~~l~~i~r~---L---kpGG~l~i~~  274 (314)
                      +.+-+.+|.   +.+++.+.++   .   +++|.++|.+
T Consensus       498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~  536 (665)
T PRK14873        498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA  536 (665)
T ss_pred             hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence            223344443   3444444433   3   3478888875

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=92.75  E-value=0.049  Score=41.32  Aligned_cols=22  Identities=32%  Similarity=0.921  Sum_probs=18.9

Q ss_pred             ccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        63 CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ||+||+++..             ..+.|++|+...
T Consensus         1 CPvCg~~l~v-------------t~l~C~~C~t~i   22 (113)
T PF09862_consen    1 CPVCGGELVV-------------TRLKCPSCGTEI   22 (113)
T ss_pred             CCCCCCceEE-------------EEEEcCCCCCEE
Confidence            9999999976             579999998664

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.75  E-value=0.045  Score=33.26  Aligned_cols=37  Identities=14%  Similarity=0.225  Sum_probs=20.8

Q ss_pred             eeccCCCccchhcC-CCCccccccccCceecCCCCccc
Q 021344           61 FSCPICYEPLIRKG-PTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        61 l~CP~C~~~l~~~~-~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      +.||.|+....... .+....++.+.-.+.|.+||+.|
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w   38 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW   38 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence            36999999632211 11223455556688999999876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=92.65  E-value=0.051  Score=28.85  Aligned_cols=22  Identities=23%  Similarity=0.588  Sum_probs=16.7

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      .||.||.++..             +.-.|+.||+.
T Consensus         1 ~Cp~CG~~~~~-------------~~~fC~~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIED-------------DAKFCPNCGTP   22 (23)
T ss_pred             CCcccCCCCCC-------------cCcchhhhCCc
Confidence            39999998753             45679999864

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=92.57  E-value=2.5  Score=37.32  Aligned_cols=117  Identities=11%  Similarity=-0.024  Sum_probs=73.6

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-----
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----  231 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l-----  231 (314)
                      +.+.+.. ....|+.+|||-=.-...+.. ..+..++-+|. ++.++.=++.+.+.+.....+.+++..|+.. +     
T Consensus        74 i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~  150 (260)
T TIGR00027        74 LLAAVAA-GIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALA  150 (260)
T ss_pred             HHHHHhc-CCcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHH
Confidence            3334433 245799999997554444432 22346666665 5566666667765432234688999999862 1     


Q ss_pred             --CCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          232 --PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       232 --p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                        .+..+.--++++-.++.+++..  ..+++.+.+...||+.+++.....
T Consensus       151 ~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       151 AAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             hCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence              0112233367778888888754  478999988888999998876443

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=92.56  E-value=3.4  Score=40.24  Aligned_cols=127  Identities=14%  Similarity=0.129  Sum_probs=77.8

Q ss_pred             CCCchHHHHHHHHHhccC--CCCeEEEEcCcccHHHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCe
Q 021344          148 FPGPDEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKS---G-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNL  221 (314)
Q Consensus       148 ~~~~~~~~~~l~~~l~~~--~~~~iLDiGcG~G~~~~~l~~~---~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v  221 (314)
                      +..+.+.++.+.+.+...  ++..+.|.-||+|.++....+.   + ....++|.+....+...++.++..++. .....
T Consensus       197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~-~~~t~  275 (501)
T TIGR00497       197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI-DYANF  275 (501)
T ss_pred             eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC-Ccccc
Confidence            567778888877776643  5578999999999988765432   1 124689999999999999887544431 01122


Q ss_pred             EEEEecCCCCC-C-CCCchhhheecch--------------------hcc----CCC-HHHHHHHHHhhcccCcEEEEEe
Q 021344          222 ALVRADVCRLP-F-ASGFVDAVHAGAA--------------------LHC----WPS-PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       222 ~~~~~d~~~lp-~-~~~~fD~V~~~~v--------------------l~h----~~d-~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ....+|....+ + ....||+|+++--                    +.|    ..+ -..++..+..+|++||+..+.-
T Consensus       276 ~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~  355 (501)
T TIGR00497       276 NIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC  355 (501)
T ss_pred             CcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence            23233332211 1 1234666654211                    112    111 1367888899999999866655


Q ss_pred             c
Q 021344          275 F  275 (314)
Q Consensus       275 ~  275 (314)
                      .
T Consensus       356 ~  356 (501)
T TIGR00497       356 F  356 (501)
T ss_pred             c
Confidence            3

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.38  E-value=2.1  Score=37.07  Aligned_cols=96  Identities=23%  Similarity=0.282  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCCCch
Q 021344          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV  238 (314)
Q Consensus       165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~~~~~f  238 (314)
                      .++.+||..|+|. |..+..+++.. +.++++++.++...+.+++.-         ...++...-...     ....+.+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELG---------ADHVIDYKEEDLEEELRLTGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhC---------CceeccCCcCCHHHHHHHhcCCCC
Confidence            5688999999996 77776666654 359999999988777765421         011111110000     0123468


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      |+|+...     ... ..+..+.+.|+++|.++.....
T Consensus       203 d~vi~~~-----~~~-~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         203 DVVIDAV-----GGP-ETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             CEEEECC-----CCH-HHHHHHHHhcccCCEEEEEccC
Confidence            8887532     221 4577788899999999876643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PLN02740 Alcohol dehydrogenase-like

Probab=92.29  E-value=1.4  Score=41.03  Aligned_cols=100  Identities=14%  Similarity=0.139  Sum_probs=61.7

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC--C-----CC
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--L-----PF  233 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~--l-----p~  233 (314)
                      ....++.+||-+|+|. |..+..+++.....+|+++|.++..++.+++.    +    .. .++...-.+  .     ..
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----G----a~-~~i~~~~~~~~~~~~v~~~  264 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----G----IT-DFINPKDSDKPVHERIREM  264 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----C----Cc-EEEecccccchHHHHHHHH
Confidence            4556788999999886 77777777765333699999999988888652    1    11 122111000  0     01


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEecc
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~~  276 (314)
                      ..+.+|+|+-.     ...+ ..+....+.+++| |++++....
T Consensus       265 ~~~g~dvvid~-----~G~~-~~~~~a~~~~~~g~G~~v~~G~~  302 (381)
T PLN02740        265 TGGGVDYSFEC-----AGNV-EVLREAFLSTHDGWGLTVLLGIH  302 (381)
T ss_pred             hCCCCCEEEEC-----CCCh-HHHHHHHHhhhcCCCEEEEEccC
Confidence            12257777643     2233 4577777888897 988776543

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=92.21  E-value=0.097  Score=33.68  Aligned_cols=29  Identities=24%  Similarity=0.488  Sum_probs=20.0

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ..-.||.||+.+....          .+.+.|..||..+
T Consensus        19 ~~~fCP~Cg~~~m~~~----------~~r~~C~~Cgyt~   47 (50)
T PRK00432         19 KNKFCPRCGSGFMAEH----------LDRWHCGKCGYTE   47 (50)
T ss_pred             ccCcCcCCCcchhecc----------CCcEECCCcCCEE
Confidence            3447999999632221          1689999998765

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=92.09  E-value=0.17  Score=44.31  Aligned_cols=115  Identities=17%  Similarity=0.177  Sum_probs=61.9

Q ss_pred             HHhccCCCCeEEEEcCcccHHHHHHHH---h-C-CCCeEEEEeCCH--------------------------HHHHHHHH
Q 021344          160 EYFKSAQGGLLVDVSCGSGLFSRKFAK---S-G-TYSGVVALDFSE--------------------------NMLRQCYD  208 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~G~~~~~l~~---~-~-~~~~v~giD~s~--------------------------~~~~~a~~  208 (314)
                      ..+...-.+.|+|+||-.|..+..++.   . + .+.++++.|--+                          ...+..++
T Consensus        68 ~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~  147 (248)
T PF05711_consen   68 QVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRE  147 (248)
T ss_dssp             HCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHH
T ss_pred             HHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHH
Confidence            333344567899999999976654432   2 1 355788888311                          12344444


Q ss_pred             HHHhcCCCCCCCeEEEEecCCC-CC-CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          209 FIKQDNTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       209 ~~~~~~~~~~~~v~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++...+. ...++.++.|.+.+ +| .+.+++-++....  .........|..++..|.|||++++-++..
T Consensus       148 n~~~~gl-~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  148 NFARYGL-LDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             CCCCTTT-SSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             HHHHcCC-CcccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            4444432 24689999999843 33 1222332222211  111123578999999999999999988765

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors []

Probab=92.05  E-value=0.12  Score=30.13  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=23.2

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (314)
                      .+..|+.|++......         ..+.+.|..||..|+
T Consensus         2 ~~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~   32 (33)
T PF08792_consen    2 NLKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP   32 (33)
T ss_pred             CceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence            3567999999886622         126899999998874

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=92.04  E-value=0.1  Score=30.15  Aligned_cols=27  Identities=19%  Similarity=0.349  Sum_probs=15.2

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      -||.||++......         ....+|+.|++.+
T Consensus         5 fC~~CG~~t~~~~~---------g~~r~C~~Cg~~~   31 (32)
T PF09297_consen    5 FCGRCGAPTKPAPG---------GWARRCPSCGHEH   31 (32)
T ss_dssp             B-TTT--BEEE-SS---------SS-EEESSSS-EE
T ss_pred             ccCcCCccccCCCC---------cCEeECCCCcCEe
Confidence            39999999866442         1578999998753

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>PTZ00357 methyltransferase; Provisional

Probab=92.00  E-value=0.82  Score=45.40  Aligned_cols=100  Identities=16%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             eEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHh-cCCC-----CCCCeEEEEecCCCCCCCC---
Q 021344          169 LLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQ-DNTI-----LTSNLALVRADVCRLPFAS---  235 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~-~~~~-----~~~~v~~~~~d~~~lp~~~---  235 (314)
                      .|+-+|+|-|-+.....+.    +-..++++||-++..+...+.+... ..+.     ....|+++..|+..+..+.   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999876555443    4456899999996654444444322 2210     0245999999998764321   


Q ss_pred             --------CchhhheecchhccCCCH---HHHHHHHHhhccc----CcE
Q 021344          236 --------GFVDAVHAGAALHCWPSP---SNAVAEISRILRS----GGV  269 (314)
Q Consensus       236 --------~~fD~V~~~~vl~h~~d~---~~~l~~i~r~Lkp----GG~  269 (314)
                              +++|+|++ ..|--+.|-   .+-|..+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                    36998886 223333332   2457777777876    675

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=91.96  E-value=1.8  Score=39.42  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=68.8

Q ss_pred             HHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC------C
Q 021344          159 QEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------L  231 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~------l  231 (314)
                      ....+.+++.++.-+|||. |.....-++.....+++++|+++..++.|++.         ...+++...-..      .
T Consensus       178 ~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f---------GAT~~vn~~~~~~vv~~i~  248 (366)
T COG1062         178 VNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF---------GATHFVNPKEVDDVVEAIV  248 (366)
T ss_pred             hhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc---------CCceeecchhhhhHHHHHH
Confidence            3445667899999999997 77777666665466999999999999999883         223333321110      0


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ...++..|.+     ++...+.. .++.....+.++|..++.....
T Consensus       249 ~~T~gG~d~~-----~e~~G~~~-~~~~al~~~~~~G~~v~iGv~~  288 (366)
T COG1062         249 ELTDGGADYA-----FECVGNVE-VMRQALEATHRGGTSVIIGVAG  288 (366)
T ss_pred             HhcCCCCCEE-----EEccCCHH-HHHHHHHHHhcCCeEEEEecCC
Confidence            1223334443     44444444 6788888888899998877654

>PLN02827 Alcohol dehydrogenase-like

Probab=91.83  E-value=1.6  Score=40.74  Aligned_cols=99  Identities=15%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec-----CCC-C-CC
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-----VCR-L-PF  233 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d-----~~~-l-p~  233 (314)
                      ....++.+||-+|+|. |.++..+++......++++|.++...+.+++.    +    .. .++...     ... + ..
T Consensus       189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----G----a~-~~i~~~~~~~~~~~~v~~~  259 (378)
T PLN02827        189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----G----VT-DFINPNDLSEPIQQVIKRM  259 (378)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----Cc-EEEcccccchHHHHHHHHH
Confidence            3456788999999876 77777777764333689999999888777652    1    11 111110     000 0 01


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEec
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~  275 (314)
                      ..+.+|+|+-.     ...+ ..+....+.|++| |++++...
T Consensus       260 ~~~g~d~vid~-----~G~~-~~~~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        260 TGGGADYSFEC-----VGDT-GIATTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             hCCCCCEEEEC-----CCCh-HHHHHHHHhhccCCCEEEEECC
Confidence            12247766642     2222 3467788889998 99987553

>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA

Probab=91.66  E-value=0.11  Score=38.68  Aligned_cols=31  Identities=16%  Similarity=0.487  Sum_probs=24.5

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccccCcc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (314)
                      -.||.|+++..-.+.          ..+.|+.|+|.|...+
T Consensus         3 p~CP~C~seytY~dg----------~~~iCpeC~~EW~~~~   33 (109)
T TIGR00686         3 PPCPKCNSEYTYHDG----------TQLICPSCLYEWNENE   33 (109)
T ss_pred             CcCCcCCCcceEecC----------CeeECccccccccccc
Confidence            469999999866554          5799999999995543

The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).

>PRK05580 primosome assembly protein PriA; Validated

Probab=91.63  E-value=3.1  Score=42.12  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=23.9

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCC
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS  199 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s  199 (314)
                      +..+-..|-|+=.....+.+.+++.++.-+|-+
T Consensus       429 ~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d  461 (679)
T PRK05580        429 STDLVPVGPGTERLEEELAELFPEARILRIDRD  461 (679)
T ss_pred             CCeeEEeeccHHHHHHHHHHhCCCCcEEEEecc
Confidence            345677778887888888887776677777754

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=91.61  E-value=0.096  Score=42.26  Aligned_cols=40  Identities=25%  Similarity=0.529  Sum_probs=22.9

Q ss_pred             eeccCCCccchhc-CCCCccccccccCceecCCCCccccCc
Q 021344           61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (314)
Q Consensus        61 l~CP~C~~~l~~~-~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (314)
                      +.||-||++.... .......+...+....|++||..|...
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~   41 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTF   41 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEe
Confidence            4799999976221 111111222222238899999998543

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=91.60  E-value=1.9  Score=39.20  Aligned_cols=100  Identities=14%  Similarity=0.071  Sum_probs=60.3

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---C-CC-C
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L-PF-A  234 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---l-p~-~  234 (314)
                      .+...++.+||-+|+|. |.++..+++.....+++++|.++...+.+++.    +    . -.++...-..   + .. .
T Consensus       158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----g----a-~~~i~~~~~~~~~~~~~~~  228 (339)
T cd08239         158 RVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----G----A-DFVINSGQDDVQEIRELTS  228 (339)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C----C-CEEEcCCcchHHHHHHHhC
Confidence            34556788999999875 66776677664222399999999888877652    1    1 1111111000   0 01 1


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ...+|+|+-..     .. ...+....+.|+++|.+++...
T Consensus       229 ~~~~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         229 GAGADVAIECS-----GN-TAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CCCCCEEEECC-----CC-HHHHHHHHHHhhcCCEEEEEcC
Confidence            23588877432     12 2346777889999999987654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=91.48  E-value=2.4  Score=39.02  Aligned_cols=99  Identities=12%  Similarity=0.042  Sum_probs=61.5

Q ss_pred             HhccCCCCeEEEEcC-c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe----cCCC-C-C
Q 021344          161 YFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-L-P  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~----d~~~-l-p  232 (314)
                      .....++.+||-.|+ | .|.++..+++.. +.++++++.++...+.+++.+.       .. .++..    +..+ + .
T Consensus       153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lG-------a~-~vi~~~~~~~~~~~i~~  223 (348)
T PLN03154        153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLG-------FD-EAFNYKEEPDLDAALKR  223 (348)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcC-------CC-EEEECCCcccHHHHHHH
Confidence            344567889999998 3 588888888774 3489999999887777653221       11 11211    1100 0 0


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ...+.+|+|+-.     +.  ...+....+.|++||++++...
T Consensus       224 ~~~~gvD~v~d~-----vG--~~~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        224 YFPEGIDIYFDN-----VG--GDMLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             HCCCCcEEEEEC-----CC--HHHHHHHHHHhccCCEEEEECc
Confidence            112357777643     22  2467888999999999987654

>PRK10220 hypothetical protein; Provisional

Probab=91.48  E-value=0.13  Score=38.26  Aligned_cols=32  Identities=19%  Similarity=0.584  Sum_probs=25.0

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccccCcc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (314)
                      +-.||.|+++..-.+.          ..+.|+.|++.|...+
T Consensus         3 lP~CP~C~seytY~d~----------~~~vCpeC~hEW~~~~   34 (111)
T PRK10220          3 LPHCPKCNSEYTYEDN----------GMYICPECAHEWNDAE   34 (111)
T ss_pred             CCcCCCCCCcceEcCC----------CeEECCcccCcCCccc
Confidence            3469999998866554          5799999999996543

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=91.31  E-value=0.48  Score=42.54  Aligned_cols=100  Identities=20%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      +..+|.-||.|. |.....++.-. ..+|+-+|+|.+.+++....+       ..++..+..+...+.-.-.+.|+|+..
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga  238 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA  238 (371)
T ss_pred             CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence            456788899987 77766666543 459999999999888877754       256777776665544334478988875


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      -.+---..|.-..+++.+.+|||++++=.
T Consensus       239 VLIpgakaPkLvt~e~vk~MkpGsVivDV  267 (371)
T COG0686         239 VLIPGAKAPKLVTREMVKQMKPGSVIVDV  267 (371)
T ss_pred             EEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence            55555567888899999999999998743

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=91.26  E-value=0.1  Score=31.84  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=23.2

Q ss_pred             eeccCCCccchhc-CCCCccccccccCceecCCCCccc
Q 021344           61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        61 l~CP~C~~~l~~~-~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ..||.|+...... ..+....++.+.-.+.|.+|++.|
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w   38 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW   38 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence            3699999863221 111223455556688999999876

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=91.24  E-value=0.16  Score=45.23  Aligned_cols=104  Identities=18%  Similarity=0.246  Sum_probs=74.5

Q ss_pred             CCeEEEEcCcccHHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          167 GGLLVDVSCGSGLFSR-KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~-~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      +..|+|+=+|-|+|+. .+...+ ...|+++|.++..++..++.++.++  ...+...+.+|-... -++...|-|... 
T Consensus       195 ~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~--V~~r~~i~~gd~R~~-~~~~~AdrVnLG-  269 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANN--VMDRCRITEGDNRNP-KPRLRADRVNLG-  269 (351)
T ss_pred             cchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcc--hHHHHHhhhcccccc-Cccccchheeec-
Confidence            5789999999999998 555555 4589999999999999999888765  345566666775543 345667777654 


Q ss_pred             hhccCCCHHHHHHHHHhhccc-Cc-EEEEEecccC
Q 021344          246 ALHCWPSPSNAVAEISRILRS-GG-VFVGTTFLRY  278 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~Lkp-GG-~l~i~~~~~~  278 (314)
                         -+|.-++-...+.++||| || ++-|.+....
T Consensus       270 ---LlPSse~~W~~A~k~Lk~eggsilHIHenV~~  301 (351)
T KOG1227|consen  270 ---LLPSSEQGWPTAIKALKPEGGSILHIHENVKD  301 (351)
T ss_pred             ---cccccccchHHHHHHhhhcCCcEEEEeccccc
Confidence               345555556667778887 44 6667665543

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=91.21  E-value=0.13  Score=39.63  Aligned_cols=30  Identities=7%  Similarity=0.047  Sum_probs=23.2

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccccCc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (314)
                      -.||.||+.++-...          ....|+.||..|+..
T Consensus        10 r~Cp~cg~kFYDLnk----------~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYDLNR----------RPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCccccccCC----------CCccCCCcCCccCcc
Confidence            369999999865442          578999999998544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.13  E-value=0.11  Score=36.13  Aligned_cols=34  Identities=24%  Similarity=0.587  Sum_probs=23.9

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccccCc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (314)
                      ++.||+|+-++.-...++.       ..-.|+.|+-+|..+
T Consensus         1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDr   34 (88)
T COG3809           1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDR   34 (88)
T ss_pred             CcccCcCCceeeeeeecCc-------eeeeCCccccEeecc
Confidence            4679999999865443322       356799998887554

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=91.01  E-value=0.57  Score=47.23  Aligned_cols=108  Identities=17%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhC-------C-----CCeEEEEeCCH---HHHHHHH-----------HHHHh-----cC
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSG-------T-----YSGVVALDFSE---NMLRQCY-----------DFIKQ-----DN  214 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~-------~-----~~~v~giD~s~---~~~~~a~-----------~~~~~-----~~  214 (314)
                      +.-+|+|+|-|+|.......+..       +     ..+++++|..+   ..+..+.           +....     .+
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34689999999999655444322       2     24789999644   2232222           11111     00


Q ss_pred             C------CCCCCeEEEEecCCC-CCCCCCchhhheecchhccCCCH----HHHHHHHHhhcccCcEEEEEe
Q 021344          215 T------ILTSNLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       215 ~------~~~~~v~~~~~d~~~-lp~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .      ...-.+++..+|+.+ ++--...||+++... |.=-.||    ..+++.+.++++|||.+...+
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence            0      001245567777743 221224689998743 1212244    479999999999999997655

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=90.93  E-value=2.7  Score=38.98  Aligned_cols=100  Identities=17%  Similarity=0.173  Sum_probs=60.8

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE-ec----CCC-C-C
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-AD----VCR-L-P  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~-~d----~~~-l-p  232 (314)
                      .....++.+||-+|+|. |..+..+++.....+|+++|.++...+.+++.    +    .. ..+. .+    +.. + .
T Consensus       180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----G----a~-~~i~~~~~~~~~~~~v~~  250 (368)
T TIGR02818       180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----G----AT-DCVNPNDYDKPIQEVIVE  250 (368)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C----CC-eEEcccccchhHHHHHHH
Confidence            34456788999999876 77777777765333799999999988888652    1    11 1111 10    000 0 0


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEec
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~  275 (314)
                      ...+.+|+|+-.     ...+ ..+.+..+.+++| |++++...
T Consensus       251 ~~~~g~d~vid~-----~G~~-~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       251 ITDGGVDYSFEC-----IGNV-NVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             HhCCCCCEEEEC-----CCCH-HHHHHHHHHhhcCCCeEEEEec
Confidence            112246766532     2233 3577788899886 99887664

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=90.80  E-value=0.14  Score=33.28  Aligned_cols=26  Identities=23%  Similarity=0.686  Sum_probs=20.8

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      -.|++|+.++...+           ..+.|+.||..|
T Consensus         6 ~~C~~Cg~~~~~~d-----------DiVvCp~Cgapy   31 (54)
T PF14446_consen    6 CKCPVCGKKFKDGD-----------DIVVCPECGAPY   31 (54)
T ss_pred             ccChhhCCcccCCC-----------CEEECCCCCCcc
Confidence            36999999986544           589999998776

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=90.80  E-value=0.1  Score=28.61  Aligned_cols=23  Identities=22%  Similarity=0.541  Sum_probs=17.2

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      ..||.||..+..             +.-.|++||..
T Consensus         3 ~~Cp~Cg~~~~~-------------~~~fC~~CG~~   25 (26)
T PF13248_consen    3 MFCPNCGAEIDP-------------DAKFCPNCGAK   25 (26)
T ss_pred             CCCcccCCcCCc-------------ccccChhhCCC
Confidence            469999996532             56889999863

>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.79  E-value=0.077  Score=40.44  Aligned_cols=44  Identities=23%  Similarity=0.489  Sum_probs=29.1

Q ss_pred             CCeeeccCCCccchhcCCC--CccccccccCceecCCCCccccCcc
Q 021344           58 GDLFSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTYSSKD  101 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~--~~~~~~i~~~~l~C~~C~~~~~~~~  101 (314)
                      ..+.+||+|..+..-....  ....+.-++..-.|.+||..||..+
T Consensus        37 ati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte   82 (160)
T COG4306          37 ATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE   82 (160)
T ss_pred             HHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence            4688999999875322111  1234444556778999999998754

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=90.46  E-value=2.8  Score=38.29  Aligned_cols=99  Identities=13%  Similarity=0.127  Sum_probs=59.4

Q ss_pred             ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---C--CCCCC
Q 021344          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L--PFASG  236 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---l--p~~~~  236 (314)
                      ...++.+||-.|+|. |..+..+++......+++++.++...+.+++.    +    . -.++..+-..   +  .....
T Consensus       157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----G----a-~~~i~~~~~~~~~~~~~~~~~  227 (347)
T PRK10309        157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----G----A-MQTFNSREMSAPQIQSVLREL  227 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----C-ceEecCcccCHHHHHHHhcCC
Confidence            345678999999876 77777777764333478999999888777542    1    1 1111111000   0  01123


Q ss_pred             chh-hheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          237 FVD-AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       237 ~fD-~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+| +|+     +.... ...+.+..+.|++||.+++....
T Consensus       228 ~~d~~v~-----d~~G~-~~~~~~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        228 RFDQLIL-----ETAGV-PQTVELAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             CCCeEEE-----ECCCC-HHHHHHHHHHhhcCCEEEEEccC
Confidence            466 443     22333 34678888999999999987643

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.41  E-value=0.16  Score=28.37  Aligned_cols=22  Identities=27%  Similarity=0.841  Sum_probs=11.1

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCC
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK   92 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~   92 (314)
                      .||+|++++.+....         -.++|.+
T Consensus         1 ~CP~C~s~l~~~~~e---------v~~~C~N   22 (28)
T PF03119_consen    1 TCPVCGSKLVREEGE---------VDIRCPN   22 (28)
T ss_dssp             B-TTT--BEEE-CCT---------TCEEE--
T ss_pred             CcCCCCCEeEcCCCC---------EeEECCC
Confidence            499999999864432         4677764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=90.40  E-value=0.29  Score=31.52  Aligned_cols=34  Identities=32%  Similarity=0.588  Sum_probs=23.0

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCCCCccccCccc
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g  102 (314)
                      -||.||+-+......       ....+.|+.||+.+.+...
T Consensus         2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~~   35 (52)
T smart00661        2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQK   35 (52)
T ss_pred             CCCCCCCccccccCC-------CCCEEECCcCCCeEECCCc
Confidence            399999977553321       1137899999988766544

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=90.38  E-value=0.11  Score=37.60  Aligned_cols=30  Identities=27%  Similarity=0.821  Sum_probs=21.7

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .-+.||.|+.......         ..+++.|..|+..|
T Consensus        34 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~~C~~~~   63 (90)
T PF01780_consen   34 AKYTCPFCGKTSVKRV---------ATGIWKCKKCGKKF   63 (90)
T ss_dssp             S-BEESSSSSSEEEEE---------ETTEEEETTTTEEE
T ss_pred             CCCcCCCCCCceeEEe---------eeEEeecCCCCCEE
Confidence            3577999999764422         22789999998776

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=90.35  E-value=3.1  Score=37.63  Aligned_cols=98  Identities=11%  Similarity=-0.014  Sum_probs=60.6

Q ss_pred             HHhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-CCC-----
Q 021344          160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRL-----  231 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~l-----  231 (314)
                      ......++.+||=.|.  |.|..+..+++.. +.++++++-+++..+.+++.    +    .. .++..+- ...     
T Consensus       132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~  201 (325)
T TIGR02825       132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL----G----FD-VAFNYKTVKSLEETLK  201 (325)
T ss_pred             HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----CC-EEEeccccccHHHHHH
Confidence            3445567889999984  4588888887764 34899999998887777651    1    11 1111111 010     


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ....+.+|+|+-.     +..  ..+....+.|++||+++...
T Consensus       202 ~~~~~gvdvv~d~-----~G~--~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       202 KASPDGYDCYFDN-----VGG--EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             HhCCCCeEEEEEC-----CCH--HHHHHHHHHhCcCcEEEEec
Confidence            0112357777642     222  34688889999999998764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=90.19  E-value=4.5  Score=37.97  Aligned_cols=105  Identities=18%  Similarity=0.198  Sum_probs=62.5

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCC------C
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP------F  233 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~lp------~  233 (314)
                      ....++.+||-.|+|. |..+..+++......++.+|.++..++.+++.          .+..+...- ....      .
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----------Ga~~v~~~~~~~~~~~v~~~~  250 (393)
T TIGR02819       181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----------GCETVDLSKDATLPEQIEQIL  250 (393)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----------CCeEEecCCcccHHHHHHHHc
Confidence            3455678888888876 77777777764233466778888888888762          122221110 0100      1


Q ss_pred             CCCchhhheecchhcc--------CCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 ASGFVDAVHAGAALHC--------WPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h--------~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ....+|+|+-.-.-..        -.++...+++..+.+++||.+++....
T Consensus       251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence            1235787764322110        001235789999999999999987654

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=89.85  E-value=0.28  Score=30.65  Aligned_cols=28  Identities=21%  Similarity=0.535  Sum_probs=21.5

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .+.|..||.+.....          .+.++|+.||+.-
T Consensus         2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rI   29 (44)
T smart00659        2 IYICGECGRENEIKS----------KDVVRCRECGYRI   29 (44)
T ss_pred             EEECCCCCCEeecCC----------CCceECCCCCceE
Confidence            478999999876532          2689999998764

present in RNA polymerase I, II and III

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=89.66  E-value=3.2  Score=37.66  Aligned_cols=94  Identities=20%  Similarity=0.278  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec---CCCCCCCCCchhhh
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCRLPFASGFVDAV  241 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d---~~~lp~~~~~fD~V  241 (314)
                      ++.+||..|+|. |..+..+++.....++++++.++...+.+++.    +    . -.++..+   +..+....+.+|+|
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g----~-~~vi~~~~~~~~~~~~~~~~vd~v  235 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----G----A-DETVNLARDPLAAYAADKGDFDVV  235 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C----C-CEEEcCCchhhhhhhccCCCccEE
Confidence            678899898876 77777777764222789999988877766552    1    1 1112111   11111122358888


Q ss_pred             eecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +....     . ...++++.+.|+++|+++...
T Consensus       236 ld~~g-----~-~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         236 FEASG-----A-PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             EECCC-----C-HHHHHHHHHHHhcCCEEEEEe
Confidence            75432     1 235788899999999998765

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=89.66  E-value=4.5  Score=36.50  Aligned_cols=100  Identities=15%  Similarity=0.120  Sum_probs=60.8

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCC
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFAS  235 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p~~~  235 (314)
                      .....++.+||.+|+|. |..+..+++......+++++.++...+.+++.    +    .. .++..+-...    ....
T Consensus       154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~~~  224 (334)
T cd08234         154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----G----AT-ETVDPSREDPEAQKEDNP  224 (334)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----C----Ce-EEecCCCCCHHHHHHhcC
Confidence            34456788999998764 66666666664222389999998887777542    1    11 2222111110    0123


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +.+|+|+....      ....+.++.+.|+++|.++....
T Consensus       225 ~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~  258 (334)
T cd08234         225 YGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV  258 (334)
T ss_pred             CCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence            46888875321      13568888999999999987653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=89.64  E-value=6.9  Score=33.35  Aligned_cols=112  Identities=14%  Similarity=0.077  Sum_probs=66.3

Q ss_pred             HHHHHHhccCCCCeEEEEcCccc----HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC-C
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSG----LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-R  230 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G----~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~  230 (314)
                      +++..+..-.+.+.|+++.++.|    .++...+.+..+.+++.|-+++..+...++.+...+  ...-++|+.++.. .
T Consensus        31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~--~~~~vEfvvg~~~e~  108 (218)
T PF07279_consen   31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG--LSDVVEFVVGEAPEE  108 (218)
T ss_pred             HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc--ccccceEEecCCHHH
Confidence            44444444445567999966643    233444444445599999999988888888887665  3355798888853 2


Q ss_pred             CCCCCCchhhheecchhccCCCHHHHHHHHHhhc--ccCcEEEEEec
Q 021344          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRIL--RSGGVFVGTTF  275 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L--kpGG~l~i~~~  275 (314)
                      +-..-...|+++...-      ...+.+++.+++  .|.|-+++...
T Consensus       109 ~~~~~~~iDF~vVDc~------~~d~~~~vl~~~~~~~~GaVVV~~N  149 (218)
T PF07279_consen  109 VMPGLKGIDFVVVDCK------REDFAARVLRAAKLSPRGAVVVCYN  149 (218)
T ss_pred             HHhhccCCCEEEEeCC------chhHHHHHHHHhccCCCceEEEEec
Confidence            2111235788776432      223333444444  45577666554

The function of this family is unknown.

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=89.44  E-value=1.1  Score=39.40  Aligned_cols=87  Identities=21%  Similarity=0.220  Sum_probs=59.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++...+|+|...|.++..|-+++-  .|+++|..+-+-...          ....|+....|-.+..-.....|-.+|.
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~ma~sL~----------dtg~v~h~r~DGfk~~P~r~~idWmVCD  277 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGPMAQSLM----------DTGQVTHLREDGFKFRPTRSNIDWMVCD  277 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcce--EEEEeccchhhhhhh----------cccceeeeeccCcccccCCCCCceEEee
Confidence            4688999999999999999999876  999999866332221          1356777777776643334557777765


Q ss_pred             chhccCCCHHHHHHHHHhhcccC
Q 021344          245 AALHCWPSPSNAVAEISRILRSG  267 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpG  267 (314)
                      .|    ..|.++-.-+...|..|
T Consensus       278 mV----EkP~rv~~li~~Wl~nG  296 (358)
T COG2933         278 MV----EKPARVAALIAKWLVNG  296 (358)
T ss_pred             hh----cCcHHHHHHHHHHHHcc
Confidence            54    45655555555555433

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=89.39  E-value=4.5  Score=37.44  Aligned_cols=101  Identities=17%  Similarity=0.164  Sum_probs=61.3

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC--CC-----C
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RL-----P  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~--~l-----p  232 (314)
                      .....++.+||-+|+|. |..+..+++.....+++++|.++...+.+++.    +    .. .++...-.  ..     .
T Consensus       181 ~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----G----a~-~~i~~~~~~~~~~~~v~~  251 (368)
T cd08300         181 TAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----G----AT-DCVNPKDHDKPIQQVLVE  251 (368)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----CC-EEEcccccchHHHHHHHH
Confidence            34456788999999875 67777777764323699999999988877651    1    11 11211100  00     0


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEecc
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL  276 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~~  276 (314)
                      ...+.+|+|+-.     +.. ...+.+..+.|+++ |++++....
T Consensus       252 ~~~~g~d~vid~-----~g~-~~~~~~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         252 MTDGGVDYTFEC-----IGN-VKVMRAALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             HhCCCCcEEEEC-----CCC-hHHHHHHHHhhccCCCeEEEEccC
Confidence            112357777642     222 24577788899987 998876543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=89.28  E-value=4.2  Score=37.53  Aligned_cols=99  Identities=19%  Similarity=0.220  Sum_probs=59.7

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-------CC
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-------PF  233 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-------p~  233 (314)
                      ....++.+||-+|+|. |..+..+++.....+|+++|.++...+.+++.    +   ..  .++...-...       ..
T Consensus       180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----g---a~--~~i~~~~~~~~~~~~~~~~  250 (365)
T cd08277         180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----G---AT--DFINPKDSDKPVSEVIREM  250 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C---CC--cEeccccccchHHHHHHHH
Confidence            4456788999999875 66777777765333799999999888887652    1   01  1111100000       01


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEec
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~  275 (314)
                      ..+.+|+|+-.     ... ...+.+..+.|+++ |.+++...
T Consensus       251 ~~~g~d~vid~-----~g~-~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         251 TGGGVDYSFEC-----TGN-ADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             hCCCCCEEEEC-----CCC-hHHHHHHHHhcccCCCEEEEEcC
Confidence            12357777642     222 34577888899886 99987654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=89.23  E-value=0.2  Score=34.41  Aligned_cols=26  Identities=35%  Similarity=0.945  Sum_probs=15.6

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      +.||.|+++|....           +.+.|..|+..|
T Consensus         2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~   27 (70)
T PF07191_consen    2 NTCPKCQQELEWQG-----------GHYHCEACQKDY   27 (70)
T ss_dssp             -B-SSS-SBEEEET-----------TEEEETTT--EE
T ss_pred             CcCCCCCCccEEeC-----------CEEECccccccc
Confidence            46999999986644           467777777665

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=89.17  E-value=4.9  Score=36.24  Aligned_cols=97  Identities=19%  Similarity=0.137  Sum_probs=59.4

Q ss_pred             hccCCCCeEEEEcCc-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCCchh
Q 021344          162 FKSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVD  239 (314)
Q Consensus       162 l~~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~~fD  239 (314)
                      ....++.+||-+|+| .|..+..+++.. +.++++++.++...+.+++. .       .. .++...-.... ...+.+|
T Consensus       158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g-------~~-~~~~~~~~~~~~~~~~~~d  227 (330)
T cd08245         158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL-G-------AD-EVVDSGAELDEQAAAGGAD  227 (330)
T ss_pred             hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh-C-------Cc-EEeccCCcchHHhccCCCC
Confidence            445667889999987 477776776663 34899999999887777541 1       01 11111100000 0123588


Q ss_pred             hheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +|+....     . ...+..+.+.|+++|.++...
T Consensus       228 ~vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         228 VILVTVV-----S-GAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             EEEECCC-----c-HHHHHHHHHhcccCCEEEEEC
Confidence            7775321     1 245788889999999998765

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=88.87  E-value=1.3  Score=39.52  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=60.7

Q ss_pred             CCeEEEEcCcc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec-CCCCCCCCCchhhhee
Q 021344          167 GGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRLPFASGFVDAVHA  243 (314)
Q Consensus       167 ~~~iLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d-~~~lp~~~~~fD~V~~  243 (314)
                      ..+|+=+|.|-  |.+++.+.+.+....++|.|.+...+..+.+          .++..-..+ ....  .....|+|+.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----------lgv~d~~~~~~~~~--~~~~aD~Viv   70 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----------LGVIDELTVAGLAE--AAAEADLVIV   70 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----------cCcccccccchhhh--hcccCCEEEE
Confidence            35788889886  7788889999987778999999988877765          222222111 1011  1345798887


Q ss_pred             cchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .--+..   ...+++++...||+|..+.=.+
T Consensus        71 avPi~~---~~~~l~~l~~~l~~g~iv~Dv~   98 (279)
T COG0287          71 AVPIEA---TEEVLKELAPHLKKGAIVTDVG   98 (279)
T ss_pred             eccHHH---HHHHHHHhcccCCCCCEEEecc
Confidence            543332   3567888888888887764333

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=88.78  E-value=3.7  Score=39.01  Aligned_cols=89  Identities=10%  Similarity=0.135  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .+++|+-+|+|. |......++.. +.+|+.+|.++.....+..          ..+...  ++.+.   -..+|+|+..
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~----------~G~~v~--~l~ea---l~~aDVVI~a  274 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAM----------DGFRVM--TMEEA---AELGDIFVTA  274 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHh----------cCCEec--CHHHH---HhCCCEEEEC
Confidence            688999999997 65544444432 3499999999866544433          122221  22211   1257888764


Q ss_pred             chhccCCCHHHHHH-HHHhhcccCcEEEEEecc
Q 021344          245 AALHCWPSPSNAVA-EISRILRSGGVFVGTTFL  276 (314)
Q Consensus       245 ~vl~h~~d~~~~l~-~i~r~LkpGG~l~i~~~~  276 (314)
                      -     .++ ..+. +....+|+|++++.....
T Consensus       275 T-----G~~-~vI~~~~~~~mK~GailiNvG~~  301 (425)
T PRK05476        275 T-----GNK-DVITAEHMEAMKDGAILANIGHF  301 (425)
T ss_pred             C-----CCH-HHHHHHHHhcCCCCCEEEEcCCC
Confidence            2     233 3454 688899999999887744

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=88.73  E-value=0.37  Score=27.79  Aligned_cols=27  Identities=19%  Similarity=0.496  Sum_probs=18.4

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      +.|..|+........          ..++|+.||+..
T Consensus         1 Y~C~~Cg~~~~~~~~----------~~irC~~CG~RI   27 (32)
T PF03604_consen    1 YICGECGAEVELKPG----------DPIRCPECGHRI   27 (32)
T ss_dssp             EBESSSSSSE-BSTS----------STSSBSSSS-SE
T ss_pred             CCCCcCCCeeEcCCC----------CcEECCcCCCeE
Confidence            468999998764332          578999998753

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>COG1656 Uncharacterized conserved protein [Function unknown]

Probab=88.71  E-value=0.18  Score=40.77  Aligned_cols=40  Identities=25%  Similarity=0.578  Sum_probs=24.0

Q ss_pred             CCeeeccCCCccchhcCCCCcc------ccccccCceecCCCCccc
Q 021344           58 GDLFSCPICYEPLIRKGPTGLT------LGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~------~~~i~~~~l~C~~C~~~~   97 (314)
                      ...-.||.|+++|.........      .-......++|++||+.|
T Consensus        95 ~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY  140 (165)
T COG1656          95 PEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY  140 (165)
T ss_pred             cccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence            4466799999988553321100      011123467899999886

>TIGR00936 ahcY adenosylhomocysteinase

Probab=88.69  E-value=3.9  Score=38.57  Aligned_cols=90  Identities=10%  Similarity=0.058  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ..+++|+-+|+|. |......++.. +.+|+++|.++.....+..          ......  +..+. .  ...|+|+.
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~----------~G~~v~--~leea-l--~~aDVVIt  256 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM----------DGFRVM--TMEEA-A--KIGDIFIT  256 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh----------cCCEeC--CHHHH-H--hcCCEEEE
Confidence            4688999999998 76655555543 4589999998865444433          122222  22111 1  24688765


Q ss_pred             cchhccCCCHHHHHH-HHHhhcccCcEEEEEecc
Q 021344          244 GAALHCWPSPSNAVA-EISRILRSGGVFVGTTFL  276 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~-~i~r~LkpGG~l~i~~~~  276 (314)
                      .-     .. ...+. +....+|+|++++.....
T Consensus       257 aT-----G~-~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       257 AT-----GN-KDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             CC-----CC-HHHHHHHHHhcCCCCcEEEEECCC
Confidence            32     22 33444 478899999999887643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF14353 CpXC: CpXC protein

Probab=88.68  E-value=0.2  Score=39.15  Aligned_cols=42  Identities=17%  Similarity=0.319  Sum_probs=24.6

Q ss_pred             eeccCCCccchhcCCCCcccc----------ccccCceecCCCCccccCccc
Q 021344           61 FSCPICYEPLIRKGPTGLTLG----------AIYRSGFKCRKCDKTYSSKDN  102 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~----------~i~~~~l~C~~C~~~~~~~~g  102 (314)
                      ++||.|+...........+..          ...-..+.|++||+.+...-.
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p   53 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYP   53 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCC
Confidence            579999997544332222111          111235789999999865433

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=88.65  E-value=7.1  Score=36.03  Aligned_cols=101  Identities=19%  Similarity=0.175  Sum_probs=60.4

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC--CCC-----C
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----P  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~--~~l-----p  232 (314)
                      .....++.+||-+|+|. |.++..+++.....+++++|.++...+.+++.    +    . ..++..+-  ..+     .
T Consensus       182 ~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----G----a-~~~i~~~~~~~~~~~~v~~  252 (369)
T cd08301         182 VAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----G----V-TEFVNPKDHDKPVQEVIAE  252 (369)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----C-ceEEcccccchhHHHHHHH
Confidence            34456788999999875 66777777765333799999999888887651    1    1 11121110  000     0


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEecc
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL  276 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~~  276 (314)
                      ...+.+|+|+-.     +.. ...+....+.+++| |++++....
T Consensus       253 ~~~~~~d~vid~-----~G~-~~~~~~~~~~~~~~~g~~v~~g~~  291 (369)
T cd08301         253 MTGGGVDYSFEC-----TGN-IDAMISAFECVHDGWGVTVLLGVP  291 (369)
T ss_pred             HhCCCCCEEEEC-----CCC-hHHHHHHHHHhhcCCCEEEEECcC
Confidence            112246666532     222 34567778889996 999876643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=88.59  E-value=0.22  Score=29.45  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=19.2

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCCCCccccCc
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (314)
                      =||.|++-|......       . ....|++|+..+++.
T Consensus         3 FCp~C~nlL~p~~~~-------~-~~~~C~~C~Y~~~~~   33 (35)
T PF02150_consen    3 FCPECGNLLYPKEDK-------E-KRVACRTCGYEEPIS   33 (35)
T ss_dssp             BETTTTSBEEEEEET-------T-TTEEESSSS-EEE-S
T ss_pred             eCCCCCccceEcCCC-------c-cCcCCCCCCCccCCC
Confidence            399999987653321       1 122899998887654

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

>PF14205 Cys_rich_KTR: Cysteine-rich KTR

Probab=88.58  E-value=0.34  Score=31.32  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=22.0

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ..+.||+||+.-...-.   .+.....-.+.|+.|.+..
T Consensus         3 ~Wi~CP~CgnKTR~kir---~DT~LkNfPlyCpKCK~Et   38 (55)
T PF14205_consen    3 EWILCPICGNKTRLKIR---EDTVLKNFPLYCPKCKQET   38 (55)
T ss_pred             eEEECCCCCCccceeee---cCceeccccccCCCCCceE
Confidence            57889999986422111   1122223468999997765

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=88.49  E-value=0.89  Score=42.47  Aligned_cols=62  Identities=10%  Similarity=0.105  Sum_probs=51.8

Q ss_pred             CCCeEEEEecCCCCC--CCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecccCC
Q 021344          218 TSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       218 ~~~v~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      .++++++.+++.+.-  .+++++|.++....++++++.  .+.++++.+.++|||+++.-+....+
T Consensus       274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~  339 (380)
T PF11899_consen  274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP  339 (380)
T ss_pred             CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence            388999999987632  457899999999999999765  47899999999999999998877654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Probab=88.32  E-value=0.31  Score=29.85  Aligned_cols=24  Identities=33%  Similarity=0.771  Sum_probs=18.1

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCC
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD   94 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~   94 (314)
                      -.||.|+.++.+...          +...|..|+
T Consensus        18 ~~Cp~C~~PL~~~k~----------g~~~Cv~C~   41 (41)
T PF06677_consen   18 EHCPDCGTPLMRDKD----------GKIYCVSCG   41 (41)
T ss_pred             CccCCCCCeeEEecC----------CCEECCCCC
Confidence            359999999987322          568899884

It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=88.28  E-value=0.23  Score=32.73  Aligned_cols=36  Identities=25%  Similarity=0.470  Sum_probs=20.2

Q ss_pred             CCCeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      ....|.||.||...+..-..--    .....++|++||..
T Consensus        24 ~~v~F~CPnCGe~~I~Rc~~CR----k~g~~Y~Cp~CGF~   59 (61)
T COG2888          24 TAVKFPCPNCGEVEIYRCAKCR----KLGNPYRCPKCGFE   59 (61)
T ss_pred             ceeEeeCCCCCceeeehhhhHH----HcCCceECCCcCcc
Confidence            4457889999965432111000    01146888888754

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.26  E-value=2.4  Score=38.26  Aligned_cols=113  Identities=13%  Similarity=0.127  Sum_probs=74.9

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----  232 (314)
                      +.+.+... -..|+-+|||-=  ++...-..+ ...|+-+|. |+.++.=++.+++.+.......+++..|+.+..    
T Consensus        85 ~~~~~~~g-~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~  160 (297)
T COG3315          85 VRAALDAG-IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQA  160 (297)
T ss_pred             HHHHHHhc-ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHH
Confidence            33444443 568999999753  333332333 356777775 677777777777765433447999999998432    


Q ss_pred             CCCCchh-----hheecchhccCCCH--HHHHHHHHhhcccCcEEEEEe
Q 021344          233 FASGFVD-----AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ~~~~~fD-----~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +....||     ++++-+++.+++..  .++|+.|.....||-.++...
T Consensus       161 L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~  209 (297)
T COG3315         161 LAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY  209 (297)
T ss_pred             HHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence            2223344     67788888888754  478999999988888887765

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=88.22  E-value=6.4  Score=35.44  Aligned_cols=95  Identities=19%  Similarity=0.120  Sum_probs=58.4

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCch
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~f  238 (314)
                      ......++.+||-.|+|. |..+..+++.. +.+++.++-++...+.+++ +         .+.... +....  ..+.+
T Consensus       161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~-~---------g~~~~~-~~~~~--~~~~v  226 (329)
T cd08298         161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELARE-L---------GADWAG-DSDDL--PPEPL  226 (329)
T ss_pred             HhhCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHH-h---------CCcEEe-ccCcc--CCCcc
Confidence            344456677888888765 55555555553 3589999988877766644 1         122111 11111  23458


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+++...     . ....+.++.+.|+++|.++...
T Consensus       227 D~vi~~~-----~-~~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         227 DAAIIFA-----P-VGALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             cEEEEcC-----C-cHHHHHHHHHHhhcCCEEEEEc
Confidence            8776421     1 1246888999999999999765

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=88.07  E-value=3  Score=38.55  Aligned_cols=96  Identities=17%  Similarity=0.132  Sum_probs=54.5

Q ss_pred             cCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe--cCCCCCCCCCchhh
Q 021344          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA--DVCRLPFASGFVDA  240 (314)
Q Consensus       164 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~--d~~~lp~~~~~fD~  240 (314)
                      ..++.+||-.|+|. |.++..+++.. +.++++++.+......+.+.   .+      ++.+..  +...+.-..+.+|+
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~---~G------a~~vi~~~~~~~~~~~~~~~D~  250 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINR---LG------ADSFLVSTDPEKMKAAIGTMDY  250 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHh---CC------CcEEEcCCCHHHHHhhcCCCCE
Confidence            34678898899886 77777777764 34788888776543322221   11      111110  10000000123666


Q ss_pred             heecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      |+-     ....+ ..+.+..+.|++||.++....
T Consensus       251 vid-----~~g~~-~~~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        251 IID-----TVSAV-HALGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             EEE-----CCCCH-HHHHHHHHHhcCCcEEEEeCC
Confidence            663     22333 357788899999999987653

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=88.03  E-value=5.9  Score=36.30  Aligned_cols=101  Identities=20%  Similarity=0.246  Sum_probs=60.2

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--------
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--------  232 (314)
                      ....++.+||-+|+|. |..+..+++.. +.+++++|.++..++.+++.    +      ++.+. +..+..        
T Consensus       162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~----G------a~~~i-~~~~~~~~~~~~~~  229 (349)
T TIGR03201       162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF----G------ADLTL-NPKDKSAREVKKLI  229 (349)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh----C------CceEe-cCccccHHHHHHHH
Confidence            4456788999999976 77777777764 34899999999988888652    1      11111 111100        


Q ss_pred             --C-CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 --F-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 --~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                        + ....+|.. ...+++....+ ..++...+.|++||++++....
T Consensus       230 ~~~t~~~g~d~~-~d~v~d~~g~~-~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       230 KAFAKARGLRST-GWKIFECSGSK-PGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             HhhcccCCCCCC-cCEEEECCCCh-HHHHHHHHHHhcCCeEEEECcC
Confidence              0 11234410 00123333333 4577778899999999887643

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=87.71  E-value=6.8  Score=35.81  Aligned_cols=99  Identities=15%  Similarity=0.228  Sum_probs=60.7

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CC-C
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PF-A  234 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~-~  234 (314)
                      ....++.+||-.|+|. |..+..+++......++++|.++...+.+++.    +    . -.++..+-...     .+ .
T Consensus       162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g----~-~~~v~~~~~~~~~~i~~~~~  232 (351)
T cd08285         162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----G----A-TDIVDYKNGDVVEQILKLTG  232 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----C-ceEecCCCCCHHHHHHHHhC
Confidence            3455688899888875 67777777764333699999998877777651    1    1 11121111110     01 1


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ...+|+|+...     .. ...+.++.+.|+++|+++....
T Consensus       233 ~~~~d~vld~~-----g~-~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         233 GKGVDAVIIAG-----GG-QDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             CCCCcEEEECC-----CC-HHHHHHHHHHhhcCCEEEEecc
Confidence            23578777422     12 2467889999999999986543

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=87.67  E-value=5.3  Score=34.97  Aligned_cols=96  Identities=19%  Similarity=0.175  Sum_probs=58.9

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchh
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD  239 (314)
                      ....++.++|-.|+|. |..+..+++... .+ +++++.++...+.+++.- .     ...+  +..  .........+|
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~g-~-----~~~~--~~~--~~~~~~~~~~d  161 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEALG-P-----ADPV--AAD--TADEIGGRGAD  161 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHcC-C-----Cccc--ccc--chhhhcCCCCC
Confidence            4456788898888876 667666666642 35 999999988877666521 0     0111  100  00011234588


Q ss_pred             hheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +|+....      ....+....+.|+++|.++...
T Consensus       162 ~vl~~~~------~~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         162 VVIEASG------SPSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EEEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence            8875321      1335788889999999998654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.58  E-value=7.2  Score=35.35  Aligned_cols=102  Identities=20%  Similarity=0.263  Sum_probs=65.0

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cCCCCC------
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLP------  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~~~lp------  232 (314)
                      ..+..++.++.-+|+|. |.....-++....++++|+|++++-.+.|++.         .-.+++.- |... |      
T Consensus       187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f---------GaTe~iNp~d~~~-~i~evi~  256 (375)
T KOG0022|consen  187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF---------GATEFINPKDLKK-PIQEVII  256 (375)
T ss_pred             hcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc---------CcceecChhhccc-cHHHHHH
Confidence            34567889999999997 66666656654467999999999999999873         22233322 2222 2      


Q ss_pred             -CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEecccC
Q 021344          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFLRY  278 (314)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~~~~  278 (314)
                       ..++.+|.-     +|.+.+++ .+++.....+.| |.-++......
T Consensus       257 EmTdgGvDys-----fEc~G~~~-~m~~al~s~h~GwG~sv~iGv~~~  298 (375)
T KOG0022|consen  257 EMTDGGVDYS-----FECIGNVS-TMRAALESCHKGWGKSVVIGVAAA  298 (375)
T ss_pred             HHhcCCceEE-----EEecCCHH-HHHHHHHHhhcCCCeEEEEEecCC
Confidence             123444433     44444554 466666777788 88777665543

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=87.49  E-value=7.4  Score=34.94  Aligned_cols=98  Identities=14%  Similarity=0.060  Sum_probs=60.9

Q ss_pred             HHhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----C
Q 021344          160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p  232 (314)
                      ......++.+||-.|.  |.|..+..+++.. +.++++++-++...+.+++.    +    . -.++...-...     .
T Consensus       137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~----G----a-~~vi~~~~~~~~~~v~~  206 (329)
T cd08294         137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKEL----G----F-DAVFNYKTVSLEEALKE  206 (329)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----C-CEEEeCCCccHHHHHHH
Confidence            3444567889998884  4477888787774 44899999988887777661    1    1 11221111111     0


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ...+.+|+|+-.-     .  ...+....+.|+++|.++...
T Consensus       207 ~~~~gvd~vld~~-----g--~~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         207 AAPDGIDCYFDNV-----G--GEFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             HCCCCcEEEEECC-----C--HHHHHHHHHhhccCCEEEEEc
Confidence            1123577776432     2  245788899999999998654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=87.43  E-value=6.3  Score=35.35  Aligned_cols=95  Identities=17%  Similarity=0.128  Sum_probs=58.8

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchh
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD  239 (314)
                      .....++.+||-.|+|. |..+..+++.. +.++++++.+++..+.+++ +   +      +.... +.... ...+.+|
T Consensus       150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~-~---g------~~~~~-~~~~~-~~~~~~d  216 (319)
T cd08242         150 QVPITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR-L---G------VETVL-PDEAE-SEGGGFD  216 (319)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-c---C------CcEEe-Ccccc-ccCCCCC
Confidence            34455678899888764 55555555553 3379999999888887776 2   1      11111 11111 2335688


Q ss_pred             hheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +|+-...     . ...+....+.|+++|.++...
T Consensus       217 ~vid~~g-----~-~~~~~~~~~~l~~~g~~v~~~  245 (319)
T cd08242         217 VVVEATG-----S-PSGLELALRLVRPRGTVVLKS  245 (319)
T ss_pred             EEEECCC-----C-hHHHHHHHHHhhcCCEEEEEc
Confidence            8875321     1 345778888999999998743

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=87.40  E-value=2.3  Score=37.50  Aligned_cols=73  Identities=21%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .+.+.-...+...++|+|||.|.++.+++...     ....++.||-...-. .+-+++....  ....+.=+..|+.++
T Consensus         9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~--~~~~~~R~riDI~dl   85 (259)
T PF05206_consen    9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDE--SEPKFERLRIDIKDL   85 (259)
T ss_pred             HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccC--CCCceEEEEEEeecc
Confidence            33333333456789999999999999998876     456899999865333 2333333322  113566677777765


Q ss_pred             C
Q 021344          232 P  232 (314)
Q Consensus       232 p  232 (314)
                      .
T Consensus        86 ~   86 (259)
T PF05206_consen   86 D   86 (259)
T ss_pred             c
Confidence            4

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=87.35  E-value=6.7  Score=36.96  Aligned_cols=103  Identities=19%  Similarity=0.249  Sum_probs=59.3

Q ss_pred             ccCCCCeEEEEc-Cc-ccHHHHHHHHhC-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC---CC----
Q 021344          163 KSAQGGLLVDVS-CG-SGLFSRKFAKSG-T-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RL----  231 (314)
Q Consensus       163 ~~~~~~~iLDiG-cG-~G~~~~~l~~~~-~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~---~l----  231 (314)
                      ...++.+||-+| +| .|..+..+++.. . ..+++++|.++..++.+++......  ..........|..   ++    
T Consensus       172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~--~~~Ga~~~~i~~~~~~~~~~~v  249 (410)
T cd08238         172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEA--ASRGIELLYVNPATIDDLHATL  249 (410)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccc--cccCceEEEECCCccccHHHHH
Confidence            445678899997 45 488888777763 1 2379999999999998887421100  0001111111211   11    


Q ss_pred             -CC-CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344          232 -PF-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       232 -p~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                       .. ....+|+|+...     .. ...+....+.++++|.+++.
T Consensus       250 ~~~t~g~g~D~vid~~-----g~-~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         250 MELTGGQGFDDVFVFV-----PV-PELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             HHHhCCCCCCEEEEcC-----CC-HHHHHHHHHHhccCCeEEEE
Confidence             01 123578776532     12 34678888999988876553

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family

Probab=87.32  E-value=0.42  Score=31.12  Aligned_cols=38  Identities=21%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccccC
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (314)
                      +..||.||+.-..... + ..+....+++.|.+||...+.
T Consensus         1 LkPCPfCGg~~~~~~~-~-~~~~~~~~~~~C~~Cga~~~~   38 (53)
T TIGR03655         1 LKPCPFCGGADVYLRR-G-FDPLDLSHYFECSTCGASGPV   38 (53)
T ss_pred             CCCCCCCCCcceeeEe-c-cCCCCCEEEEECCCCCCCccc
Confidence            3579999996542110 0 011122345689999877543

Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=87.05  E-value=1.2  Score=41.27  Aligned_cols=121  Identities=10%  Similarity=0.085  Sum_probs=78.4

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-------HHHhcCCCCCCCeEEEEec
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD-------FIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~-------~~~~~~~~~~~~v~~~~~d  227 (314)
                      ...+.+.+...+++...|+|.|.|.....++..+....-+|+++...-.+.+..       ..+..|. ....+..++++
T Consensus       181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk-~~~~~~~i~gs  259 (419)
T KOG3924|consen  181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK-KPNKIETIHGS  259 (419)
T ss_pred             HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC-CcCceeecccc
Confidence            344555677788999999999999999998888766677888876544333322       2222331 13567888888


Q ss_pred             CCCCCC---CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          228 VCRLPF---ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       228 ~~~lp~---~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +..-.+   -....++|+++.+.. -++...-+.++..-+++|-+++-.....
T Consensus       260 f~~~~~v~eI~~eatvi~vNN~~F-dp~L~lr~~eil~~ck~gtrIiS~~~L~  311 (419)
T KOG3924|consen  260 FLDPKRVTEIQTEATVIFVNNVAF-DPELKLRSKEILQKCKDGTRIISSKPLV  311 (419)
T ss_pred             cCCHHHHHHHhhcceEEEEecccC-CHHHHHhhHHHHhhCCCcceEecccccc
Confidence            765221   123467777766532 1223344668888899999998766544

>PLN02494 adenosylhomocysteinase

Probab=87.01  E-value=3.1  Score=39.88  Aligned_cols=101  Identities=9%  Similarity=0.022  Sum_probs=60.0

Q ss_pred             HHHHHHHHhcc-CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          154 EFKMAQEYFKS-AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       154 ~~~~l~~~l~~-~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .++.+.+.-+. ..+++|+-+|+|. |......++.. +.+|+++|.++.....+..          ......  ++.+.
T Consensus       240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~----------~G~~vv--~leEa  306 (477)
T PLN02494        240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALM----------EGYQVL--TLEDV  306 (477)
T ss_pred             HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHh----------cCCeec--cHHHH
Confidence            34444444332 3588999999998 66555555433 4489999999865444433          122222  22111


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         -...|+|+..-.     +...+..+....+|+||+++....
T Consensus       307 ---l~~ADVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        307 ---VSEADIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             ---HhhCCEEEECCC-----CccchHHHHHhcCCCCCEEEEcCC
Confidence               124788886322     222234777889999999988774

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=86.85  E-value=6.1  Score=38.93  Aligned_cols=118  Identities=19%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             HHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----C--
Q 021344          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----P--  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p--  232 (314)
                      ++--..++..|||+||..|.|++-..+.- ..+-|+|+|+-+--              ...++.-++.|+...    +  
T Consensus        38 ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------------p~~~c~t~v~dIttd~cr~~l~  103 (780)
T KOG1098|consen   38 KYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------------PIPNCDTLVEDITTDECRSKLR  103 (780)
T ss_pred             HhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------------cCCccchhhhhhhHHHHHHHHH
Confidence            33334567889999999999998888774 35579999986621              123344444444321    1  


Q ss_pred             --CCCCchhhheecch----hccCCCH-------HHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHH
Q 021344          233 --FASGFVDAVHAGAA----LHCWPSP-------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVM  293 (314)
Q Consensus       233 --~~~~~fD~V~~~~v----l~h~~d~-------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~  293 (314)
                        ...-+.|+|+....    ..++.|.       -..|+-....|..||.++.-.+ +. ...+-+.+.+.+++
T Consensus       104 k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf-rs-~dy~~ll~v~~qLf  175 (780)
T KOG1098|consen  104 KILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVF-RS-EDYNGLLRVFGQLF  175 (780)
T ss_pred             HHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccc-cC-CcchHHHHHHHHHH
Confidence              01112465554321    1111111       1346666788899999654433 32 23344455555554

>PTZ00255 60S ribosomal protein L37a; Provisional

Probab=86.77  E-value=0.31  Score=35.33  Aligned_cols=30  Identities=23%  Similarity=0.712  Sum_probs=21.7

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .-+.||.|+..-.....         .+.+.|..|+..|
T Consensus        35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~   64 (90)
T PTZ00255         35 AKYFCPFCGKHAVKRQA---------VGIWRCKGCKKTV   64 (90)
T ss_pred             CCccCCCCCCCceeeee---------eEEEEcCCCCCEE
Confidence            35779999986433222         2789999998876

>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]

Probab=86.74  E-value=0.28  Score=40.56  Aligned_cols=38  Identities=13%  Similarity=0.309  Sum_probs=22.1

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccccC
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (314)
                      -.+.||.|++.-....--  . ....+..++|..||++++.
T Consensus         5 iy~~Cp~Cg~eev~hEVi--k-~~g~~~lvrC~eCG~V~~~   42 (201)
T COG1326           5 IYIECPSCGSEEVSHEVI--K-ERGREPLVRCEECGTVHPA   42 (201)
T ss_pred             EEEECCCCCcchhhHHHH--H-hcCCceEEEccCCCcEeec
Confidence            357899999532210000  0 0112257899999999844

>TIGR00280 L37a ribosomal protein L37a

Probab=86.48  E-value=0.29  Score=35.48  Aligned_cols=30  Identities=27%  Similarity=0.881  Sum_probs=21.7

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .-+.||.|+..-.....         .+.+.|..|+..|
T Consensus        34 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~   63 (91)
T TIGR00280        34 AKYVCPFCGKKTVKRGS---------TGIWTCRKCGAKF   63 (91)
T ss_pred             cCccCCCCCCCceEEEe---------eEEEEcCCCCCEE
Confidence            35779999976433222         2789999998876

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

>PRK11524 putative methyltransferase; Provisional

Probab=86.41  E-value=0.37  Score=43.21  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=36.1

Q ss_pred             CCeEEEEecCCCC--CCCCCchhhheec--chh--c------------cCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          219 SNLALVRADVCRL--PFASGFVDAVHAG--AAL--H------------CWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       219 ~~v~~~~~d~~~l--p~~~~~fD~V~~~--~vl--~------------h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+..++++|..+.  .+++++||+|++.  +.+  .            |..-....+.++.++|||||.+++..
T Consensus         7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            3446777777553  3456788888873  111  0            00012468899999999999999864

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=86.35  E-value=1.7  Score=37.15  Aligned_cols=72  Identities=10%  Similarity=0.141  Sum_probs=52.9

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ..+.+.+..+.-.+..|.+||.|.|..++.+...+. .+...++.+...+.-.+-..+...    .++.+..+|+..
T Consensus        38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa~----~~~~IHh~D~LR  109 (326)
T KOG0821|consen   38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAAP----GKLRIHHGDVLR  109 (326)
T ss_pred             HHHHHHHhccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcCC----cceEEeccccce
Confidence            344555555555678999999999999999998863 478888888887776665554332    577777788754

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=86.26  E-value=3.5  Score=38.48  Aligned_cols=99  Identities=18%  Similarity=0.229  Sum_probs=58.3

Q ss_pred             CeEEEEcCcc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----------C----
Q 021344          168 GLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----------L----  231 (314)
Q Consensus       168 ~~iLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----------l----  231 (314)
                      .+|--+|=|. |. ++..+++.|.  +|+|+|+++..++...+          .......-+...          +    
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~----------G~~~i~e~~~~~~v~~~v~~g~lraTt   77 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNR----------GESYIEEPDLDEVVKEAVESGKLRATT   77 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhC----------CcceeecCcHHHHHHHHHhcCCceEec
Confidence            6788888887 54 4566677766  99999999988877654          222222222211          0    


Q ss_pred             -CCCCCchhhhee-cch-h--ccCCCH---HHHHHHHHhhcccCcEEEEEecccC
Q 021344          232 -PFASGFVDAVHA-GAA-L--HCWPSP---SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       232 -p~~~~~fD~V~~-~~v-l--~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                       +..-...|+++. .-+ +  ++-+|.   ....+.+.++||+|-.+++.....+
T Consensus        78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~P  132 (436)
T COG0677          78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPP  132 (436)
T ss_pred             ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence             000113444332 111 1  133333   3678889999999998888775443

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.13  E-value=11  Score=31.94  Aligned_cols=104  Identities=19%  Similarity=0.178  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCccc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C---
Q 021344          166 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A---  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~---  234 (314)
                      ++++||-.|++.|  . +...+++.|.  +|++++-++...+...+.....     .++.++.+|+.+..-     .   
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~   76 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSSTESARNVIEKAA   76 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCHHHHHHHHHHHH
Confidence            3568999998643  2 3444555565  9999999887666554433321     367888999875320     0   


Q ss_pred             --CCchhhheecchhcc-----------------CCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          235 --SGFVDAVHAGAALHC-----------------WPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       235 --~~~fD~V~~~~vl~h-----------------~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                        -+.+|.++.......                 +.-+..+++.+.+.++++|.+++....
T Consensus        77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  137 (238)
T PRK05786         77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM  137 (238)
T ss_pred             HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence              123566654332110                 001123456666677788887776643

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=86.12  E-value=2.9  Score=38.26  Aligned_cols=106  Identities=18%  Similarity=0.114  Sum_probs=66.0

Q ss_pred             HHHHhccCCCCeEEEEcCc--ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-CC
Q 021344          158 AQEYFKSAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PF  233 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG--~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l-p~  233 (314)
                      +......+++.+||-.|..  .|.++.++++.... .++++--+++..+.+++.-..      .-+.+...|+.+ . .+
T Consensus       134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd------~vi~y~~~~~~~~v~~~  206 (326)
T COG0604         134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGAD------HVINYREEDFVEQVREL  206 (326)
T ss_pred             HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCC------EEEcCCcccHHHHHHHH
Confidence            3344556678999999943  47899999988533 666776677666666552111      122333333221 1 12


Q ss_pred             CC-CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 AS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 ~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .. ..+|+|+..-.       ...+.+..+.|+++|.++......
T Consensus       207 t~g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         207 TGGKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             cCCCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEecCC
Confidence            22 36899886433       456777889999999999877654

>PRK13699 putative methylase; Provisional

Probab=86.09  E-value=0.37  Score=41.72  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=17.7

Q ss_pred             HHHHHHHHhhcccCcEEEEEe
Q 021344          254 SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       254 ~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ...+.++.|+|||||.+++..
T Consensus        52 ~~~l~E~~RVLKpgg~l~if~   72 (227)
T PRK13699         52 QPACNEMYRVLKKDALMVSFY   72 (227)
T ss_pred             HHHHHHHHHHcCCCCEEEEEe
Confidence            467899999999999988643

>TIGR00518 alaDH alanine dehydrogenase

Probab=86.06  E-value=1.3  Score=41.21  Aligned_cols=103  Identities=17%  Similarity=0.136  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      ++.+|+-+|+|. |..+...++.. +.+|+++|.++...+.+...+.       ..+.....+...+.-.-..+|+|+..
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence            456799999986 66666655543 2389999999877665544221       11111111111111011357888864


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      -.+.--..|.-+-++..+.+|||++++-....
T Consensus       238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d  269 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVAID  269 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence            32111111222235566778999887754433

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF13453 zf-TFIIB: Transcription factor zinc-finger

Probab=86.06  E-value=0.35  Score=29.60  Aligned_cols=29  Identities=24%  Similarity=0.433  Sum_probs=19.2

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .||.|+..+.....     ..  .....|++|+=.|
T Consensus         1 ~CP~C~~~l~~~~~-----~~--~~id~C~~C~G~W   29 (41)
T PF13453_consen    1 KCPRCGTELEPVRL-----GD--VEIDVCPSCGGIW   29 (41)
T ss_pred             CcCCCCcccceEEE-----CC--EEEEECCCCCeEE
Confidence            49999997754332     11  1466899998555

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=86.06  E-value=0.44  Score=37.30  Aligned_cols=43  Identities=21%  Similarity=0.488  Sum_probs=27.6

Q ss_pred             CCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCcccee
Q 021344           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYL  104 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~  104 (314)
                      .....||.|++.. .........+   .+.++|..|+..|....|..
T Consensus        28 ~~~~~cP~C~s~~-~~k~g~~~~~---~qRyrC~~C~~tf~~~~~~~   70 (129)
T COG3677          28 ITKVNCPRCKSSN-VVKIGGIRRG---HQRYKCKSCGSTFTVETGSP   70 (129)
T ss_pred             cccCcCCCCCccc-eeeECCcccc---ccccccCCcCcceeeeccCc
Confidence            3456799999987 2221111111   46899999999986665543

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=85.96  E-value=9.9  Score=34.87  Aligned_cols=95  Identities=26%  Similarity=0.293  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---------CC
Q 021344          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------FA  234 (314)
Q Consensus       165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---------~~  234 (314)
                      .++.+||-.|+|. |..+..+++.....++++++.++...+.+++.    +    . -.++..+-...+         ..
T Consensus       176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g----~-~~vi~~~~~~~~~~~~~i~~~~~  246 (361)
T cd08231         176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF----G----A-DATIDIDELPDPQRRAIVRDITG  246 (361)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----C-CeEEcCcccccHHHHHHHHHHhC
Confidence            3677888888765 66667777765322899999888777666541    1    1 111111100000         01


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ...+|+|+-...     . ...+.+..+.|+++|+++...
T Consensus       247 ~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         247 GRGADVVIEASG-----H-PAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             CCCCcEEEECCC-----C-hHHHHHHHHHhccCCEEEEEc
Confidence            235887774321     1 245778889999999998765

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>COG1779 C4-type Zn-finger protein [General function prediction only]

Probab=85.94  E-value=0.31  Score=40.53  Aligned_cols=41  Identities=20%  Similarity=0.281  Sum_probs=25.6

Q ss_pred             CCCeeeccCCCccchhcCCC--CccccccccCceecCCCCccc
Q 021344           57 EGDLFSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~--~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ....+.||+||+.+......  .--.+.+......|.+||..+
T Consensus        11 ~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~   53 (201)
T COG1779          11 FETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRS   53 (201)
T ss_pred             eeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcc
Confidence            34567899999976332211  112344555678999998765

>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function

Probab=85.75  E-value=0.45  Score=38.20  Aligned_cols=38  Identities=26%  Similarity=0.599  Sum_probs=23.2

Q ss_pred             eeeccCCCccchhcCCCCc------cccccccCceecCCCCccc
Q 021344           60 LFSCPICYEPLIRKGPTGL------TLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~------~~~~i~~~~l~C~~C~~~~   97 (314)
                      .-.|+.|.+.+........      ..-......++|+.||+.|
T Consensus        91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiy  134 (147)
T PF01927_consen   91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIY  134 (147)
T ss_pred             CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEe
Confidence            5679999998754332111      0111122478999999887

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.

>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr

Probab=85.56  E-value=0.36  Score=30.54  Aligned_cols=39  Identities=15%  Similarity=0.285  Sum_probs=23.8

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCC--CCccccCcc
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK--CDKTYSSKD  101 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~--C~~~~~~~~  101 (314)
                      .||.||+........ .-.....+-+..|.+  ||+.|....
T Consensus         1 ~CP~Cg~~a~ir~S~-~~s~~~~~~Y~qC~N~~Cg~tfv~~~   41 (47)
T PF04606_consen    1 RCPHCGSKARIRTSR-QLSPLTRELYCQCTNPECGHTFVANL   41 (47)
T ss_pred             CcCCCCCeeEEEEch-hhCcceEEEEEEECCCcCCCEEEEEE
Confidence            499999975332211 112333445788987  999985543

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=85.55  E-value=5.7  Score=38.78  Aligned_cols=82  Identities=18%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCcccHHHHH----HHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CCCC
Q 021344          166 QGGLLVDVSCGSGLFSRK----FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASG  236 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~----l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~~~  236 (314)
                      .+++||--|. +|.++..    +++.++ .+++-+|.++..+...++.+...-  ...++.++.+|..+..     +.+-
T Consensus       249 ~gK~vLVTGa-gGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~--~~~~~~~~igdVrD~~~~~~~~~~~  324 (588)
T COG1086         249 TGKTVLVTGG-GGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKF--PELKLRFYIGDVRDRDRVERAMEGH  324 (588)
T ss_pred             CCCEEEEeCC-CCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhC--CCcceEEEecccccHHHHHHHHhcC
Confidence            4678888775 4555444    444454 589999999998888888776643  2478899999998743     4455


Q ss_pred             chhhheecchhccCC
Q 021344          237 FVDAVHAGAALHCWP  251 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~  251 (314)
                      +.|+|+...++-|+|
T Consensus       325 kvd~VfHAAA~KHVP  339 (588)
T COG1086         325 KVDIVFHAAALKHVP  339 (588)
T ss_pred             CCceEEEhhhhccCc
Confidence            799999999999997

>PRK12939 short chain dehydrogenase; Provisional

Probab=85.46  E-value=5.8  Score=34.02  Aligned_cols=75  Identities=19%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             CCCeEEEEcCcc--cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC---
Q 021344          166 QGGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (314)
Q Consensus       166 ~~~~iLDiGcG~--G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~---  234 (314)
                      +++++|=.|++.  |. ++..+.+.+.  ++++++-++..+....+.++..+    .++.++.+|+.+..     +.   
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~   79 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG----GRAHAIAADLADPASVQRFFDAAA   79 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            356788787643  22 3344455565  89999988876666555554332    57889999987632     10   


Q ss_pred             --CCchhhheecch
Q 021344          235 --SGFVDAVHAGAA  246 (314)
Q Consensus       235 --~~~fD~V~~~~v  246 (314)
                        -+.+|+|+....
T Consensus        80 ~~~~~id~vi~~ag   93 (250)
T PRK12939         80 AALGGLDGLVNNAG   93 (250)
T ss_pred             HHcCCCCEEEECCC
Confidence              135787775443

>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]

Probab=85.24  E-value=0.44  Score=34.77  Aligned_cols=36  Identities=25%  Similarity=0.600  Sum_probs=26.7

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccccCccc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g  102 (314)
                      ++-||.||+-|......      + ...+.|+.|...+++...
T Consensus         1 m~FCP~Cgn~Live~g~------~-~~rf~C~tCpY~~~I~~e   36 (105)
T KOG2906|consen    1 MLFCPTCGNMLIVESGE------S-CNRFSCRTCPYVFPISRE   36 (105)
T ss_pred             CcccCCCCCEEEEecCC------e-EeeEEcCCCCceeeEeee
Confidence            35699999988765432      2 467999999988877743

>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.09  E-value=0.49  Score=35.03  Aligned_cols=25  Identities=36%  Similarity=0.891  Sum_probs=20.5

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      -+..||+|+..++.             ..++|.+|+..
T Consensus         5 ~~~~cPvcg~~~iV-------------TeL~c~~~etT   29 (122)
T COG3877           5 VINRCPVCGRKLIV-------------TELKCSNCETT   29 (122)
T ss_pred             CCCCCCccccccee-------------EEEecCCCCce
Confidence            35679999999877             56999999765

>PRK07109 short chain dehydrogenase; Provisional

Probab=85.02  E-value=12  Score=34.21  Aligned_cols=75  Identities=25%  Similarity=0.245  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      .+++||-.|++.|-   ++..+++.|.  +|+.++-++..++...+.++..+    .++.++.+|+.+...         
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~~~~~~   80 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAAADRAE   80 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHHHH
Confidence            35678888875542   4455666665  89999998887776666655443    578888999876320         


Q ss_pred             -CCCchhhheecch
Q 021344          234 -ASGFVDAVHAGAA  246 (314)
Q Consensus       234 -~~~~fD~V~~~~v  246 (314)
                       .-+.+|+++.+..
T Consensus        81 ~~~g~iD~lInnAg   94 (334)
T PRK07109         81 EELGPIDTWVNNAM   94 (334)
T ss_pred             HHCCCCCEEEECCC
Confidence             0135787776543

>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed

Probab=85.01  E-value=0.36  Score=34.98  Aligned_cols=30  Identities=27%  Similarity=0.800  Sum_probs=21.5

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .-+.||.|+..-.....         .+.+.|..|+..+
T Consensus        35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~   64 (90)
T PRK03976         35 AKHVCPVCGRPKVKRVG---------TGIWECRKCGAKF   64 (90)
T ss_pred             cCccCCCCCCCceEEEE---------EEEEEcCCCCCEE
Confidence            35779999876443222         2789999998876

>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7

Probab=84.94  E-value=0.58  Score=30.67  Aligned_cols=31  Identities=19%  Similarity=0.415  Sum_probs=24.5

Q ss_pred             CCCeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ....+.|--|++++.....          ..++|..||+..
T Consensus        17 ~~miYiCgdC~~en~lk~~----------D~irCReCG~RI   47 (62)
T KOG3507|consen   17 ATMIYICGDCGQENTLKRG----------DVIRCRECGYRI   47 (62)
T ss_pred             ccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence            4568899999999876543          689999998764

0 [Transcription]

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=84.90  E-value=0.58  Score=31.24  Aligned_cols=36  Identities=17%  Similarity=0.299  Sum_probs=19.4

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~   95 (314)
                      ++..||.||++......... .+....-.+.|..||.
T Consensus         2 ~LkPCPFCG~~~~~~~~~~~-~~~~~~~~V~C~~Cga   37 (61)
T PF14354_consen    2 ELKPCPFCGSADVLIRQDEG-FDYGMYYYVECTDCGA   37 (61)
T ss_pred             CCcCCCCCCCcceEeecccC-CCCCCEEEEEcCCCCC
Confidence            46779999876544332100 0000003577999986

>PRK07806 short chain dehydrogenase; Provisional

Probab=84.76  E-value=12  Score=32.00  Aligned_cols=102  Identities=18%  Similarity=0.095  Sum_probs=56.2

Q ss_pred             CCeEEEEcCcc--cH-HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C---
Q 021344          167 GGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A---  234 (314)
Q Consensus       167 ~~~iLDiGcG~--G~-~~~~l~~~~~~~~v~giD~s~-~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~---  234 (314)
                      ++++|-.|++.  |. +...+++.+.  +|++++-+. ...+...+.++..+    .++.++.+|+.+...     .   
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~~   79 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG----GRASAVGADLTDEESVAALMDTAR   79 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHH
Confidence            56899998644  33 3444555565  888877653 23333333333322    467888899876320     0   


Q ss_pred             --CCchhhheecchhccCC-------------CHHHHHHHHHhhcccCcEEEEEe
Q 021344          235 --SGFVDAVHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       235 --~~~fD~V~~~~vl~h~~-------------d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                        -+..|+|+.........             -+..+++.+.+.++.+|.+++..
T Consensus        80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence              13577766543321100             12356777777776667666544

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=84.71  E-value=3.2  Score=33.17  Aligned_cols=38  Identities=21%  Similarity=0.165  Sum_probs=25.4

Q ss_pred             EEcCccc--HHHHHHH--HhCCCCeEEEEeCCHHHHHHHHHH
Q 021344          172 DVSCGSG--LFSRKFA--KSGTYSGVVALDFSENMLRQCYDF  209 (314)
Q Consensus       172 DiGcG~G--~~~~~l~--~~~~~~~v~giD~s~~~~~~a~~~  209 (314)
                      |||++.|  .....+.  ..++..+++++|+++...+..+++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5555443  456677999999999999988888

; PDB: 2PY6_A.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=84.61  E-value=0.46  Score=38.13  Aligned_cols=40  Identities=20%  Similarity=0.517  Sum_probs=25.4

Q ss_pred             cCCCCeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ......+.||.|+......+..... +  ..+.+.|+.||...
T Consensus        94 e~~~~~Y~Cp~C~~~y~~~ea~~~~-d--~~~~f~Cp~Cg~~l  133 (147)
T smart00531       94 ETNNAYYKCPNCQSKYTFLEANQLL-D--MDGTFTCPRCGEEL  133 (147)
T ss_pred             ccCCcEEECcCCCCEeeHHHHHHhc-C--CCCcEECCCCCCEE
Confidence            3345689999999876543321111 1  24569999998653

>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]

Probab=84.60  E-value=0.54  Score=43.94  Aligned_cols=32  Identities=28%  Similarity=0.631  Sum_probs=24.2

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccccCcc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (314)
                      .=.||.||......+.          +.++|++||..++...
T Consensus       350 ~p~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~  381 (421)
T COG1571         350 NPVCPRCGGRMKSAGR----------NGFRCKKCGTRARETL  381 (421)
T ss_pred             CCCCCccCCchhhcCC----------CCcccccccccCCccc
Confidence            4479999998765442          4899999998885543

>PHA02998 RNA polymerase subunit; Provisional

Probab=84.17  E-value=0.51  Score=38.44  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=27.3

Q ss_pred             CeeeccCCCccchh-cCCCCccccccccCceecCCCCccccCc
Q 021344           59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (314)
Q Consensus        59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (314)
                      ....||.|++.... ...+....++.+...+.|..||+.|..+
T Consensus       142 t~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkpp  184 (195)
T PHA02998        142 YNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKPP  184 (195)
T ss_pred             cCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCCc
Confidence            45789999985311 1111223456667789999999998443

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=84.16  E-value=4  Score=38.03  Aligned_cols=93  Identities=16%  Similarity=0.080  Sum_probs=54.3

Q ss_pred             CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHH-HHHHHHHHHhcCCCCCCCeEEEEecCCC---CCCCCCchh
Q 021344          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENM-LRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGFVD  239 (314)
Q Consensus       165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~-~~~a~~~~~~~~~~~~~~v~~~~~d~~~---lp~~~~~fD  239 (314)
                      .++.+||-.|+|. |..+..+++.. +.++++++.+++. .+.+++    .+      ++.+. +..+   +.-..+.+|
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~----lG------a~~~i-~~~~~~~v~~~~~~~D  244 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDR----LG------ADSFL-VTTDSQKMKEAVGTMD  244 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHh----CC------CcEEE-cCcCHHHHHHhhCCCc
Confidence            4678899999876 77777777764 3479999887543 444433    11      11111 1110   000012367


Q ss_pred             hheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +|+-.     ...+ ..+.+..+.|++||.++....
T Consensus       245 ~vid~-----~G~~-~~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        245 FIIDT-----VSAE-HALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             EEEEC-----CCcH-HHHHHHHHhhcCCCEEEEEcc
Confidence            66642     2222 357788899999999987664

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=84.15  E-value=13  Score=33.79  Aligned_cols=101  Identities=17%  Similarity=0.173  Sum_probs=61.0

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-------C
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------L  231 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-------l  231 (314)
                      ......++.+||-.|+|. |..+..+++......+++++-++...+.+++.    +   ..  .++..+-..       +
T Consensus       156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g---~~--~vi~~~~~~~~~~~~~~  226 (343)
T cd05285         156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----G---AT--HTVNVRTEDTPESAEKI  226 (343)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C---Cc--EEeccccccchhHHHHH
Confidence            344556788888888766 77777777764222389998888777766542    1   01  111111111       0


Q ss_pred             --CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          232 --PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                        ......+|+|+-...      ....+.+..+.|+++|+++....
T Consensus       227 ~~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g~  266 (343)
T cd05285         227 AELLGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVGM  266 (343)
T ss_pred             HHHhCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEcc
Confidence              122345888885422      12367888999999999987653

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=83.95  E-value=0.73  Score=27.89  Aligned_cols=33  Identities=12%  Similarity=0.140  Sum_probs=21.8

Q ss_pred             CCCeeeccCCCccchhcCCCCccccccccCceecCCCCc
Q 021344           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~   95 (314)
                      .+-.+.|+.||..+......      .......|+.||.
T Consensus         2 p~Y~y~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~   34 (41)
T smart00834        2 PIYEYRCEDCGHTFEVLQKI------SDDPLATCPECGG   34 (41)
T ss_pred             CCEEEEcCCCCCEEEEEEec------CCCCCCCCCCCCC
Confidence            34568999999976443211      0135788999986

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=83.74  E-value=8.8  Score=35.35  Aligned_cols=97  Identities=14%  Similarity=0.158  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE-ecCCCCCCCCCchhhhe
Q 021344          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~-~d~~~lp~~~~~fD~V~  242 (314)
                      .++.++|-+|+|. |..+..+++.. ..++++++.+++....+.+.+   +    .. ..+. .+...+.-....+|+|+
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~---G----a~-~~i~~~~~~~~~~~~~~~D~vi  249 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHL---G----AD-DYLVSSDAAEMQEAADSLDYII  249 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhc---C----Cc-EEecCCChHHHHHhcCCCcEEE
Confidence            4678888888765 77777777764 347888888776554443322   1    11 1111 11000000012366665


Q ss_pred             ecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      -.     +.. ...+....+.|++||+++.....
T Consensus       250 d~-----~g~-~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T PLN02514        250 DT-----VPV-FHPLEPYLSLLKLDGKLILMGVI  277 (357)
T ss_pred             EC-----CCc-hHHHHHHHHHhccCCEEEEECCC
Confidence            32     222 24577788999999999886643

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=83.68  E-value=12  Score=34.06  Aligned_cols=99  Identities=13%  Similarity=0.059  Sum_probs=61.3

Q ss_pred             HHhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe----cCCC-C-
Q 021344          160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-L-  231 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~----d~~~-l-  231 (314)
                      ......++.+||-.|+  |.|.++..+++.. +.++++++-++...+.+++.+..      .  .++..    +..+ + 
T Consensus       145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa------~--~vi~~~~~~~~~~~i~  215 (338)
T cd08295         145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGF------D--DAFNYKEEPDLDAALK  215 (338)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCC------c--eeEEcCCcccHHHHHH
Confidence            3345667889999996  4477877777764 34899999888877777653211      1  11211    1100 0 


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ....+.+|+|+-.     +.  ...+.+..+.|+++|.++...
T Consensus       216 ~~~~~gvd~v~d~-----~g--~~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         216 RYFPNGIDIYFDN-----VG--GKMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             HhCCCCcEEEEEC-----CC--HHHHHHHHHHhccCcEEEEec
Confidence            0112457777643     22  245788899999999998754

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK06701 short chain dehydrogenase; Provisional

Probab=83.61  E-value=9.8  Score=33.91  Aligned_cols=104  Identities=17%  Similarity=0.231  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC--
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~-~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~--  234 (314)
                      +++++|-.|++.|.   ++..+++.+.  +|+.++.+. ...+...+.++..+    .++.++.+|+.+..     +.  
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~i  118 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG----VKCLLIPGDVSDEAFCKDAVEET  118 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHHHHHHH
Confidence            36789999976542   4555666665  888887764 23333333333322    56888899986532     10  


Q ss_pred             ---CCchhhheecchhcc----CCC----------------HHHHHHHHHhhcccCcEEEEEec
Q 021344          235 ---SGFVDAVHAGAALHC----WPS----------------PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 ---~~~fD~V~~~~vl~h----~~d----------------~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         -+.+|+|+......+    +.+                +..+++.+.+.++++|.++....
T Consensus       119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence               135787775443321    111                12345566666777777776553

>PRK05854 short chain dehydrogenase; Provisional

Probab=83.57  E-value=16  Score=32.91  Aligned_cols=78  Identities=18%  Similarity=0.199  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      .++++|-.|++.|-   .+..|++.|.  +|+.++-+....+.+.+.+....  ...++.++.+|+.+..          
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dl~d~~sv~~~~~~~~   88 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAV--PDAKLSLRALDLSSLASVAALGEQLR   88 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEecCCCHHHHHHHHHHHH
Confidence            46788888877653   4556666665  89999888776666655554322  1246888999987632          


Q ss_pred             CCCCchhhheecchh
Q 021344          233 FASGFVDAVHAGAAL  247 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl  247 (314)
                      -..+..|+++.+..+
T Consensus        89 ~~~~~iD~li~nAG~  103 (313)
T PRK05854         89 AEGRPIHLLINNAGV  103 (313)
T ss_pred             HhCCCccEEEECCcc
Confidence            012457887765443

>cd08293 PTGR2 Prostaglandin reductase

Probab=83.57  E-value=15  Score=33.40  Aligned_cols=92  Identities=10%  Similarity=0.010  Sum_probs=56.1

Q ss_pred             CeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCCCchhh
Q 021344          168 GLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFVDA  240 (314)
Q Consensus       168 ~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~~~~~fD~  240 (314)
                      .+||-.|+  |.|..+..+++.....+|++++-+++..+.+++.+..      +  .++..+-..+     ....+.+|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa------~--~vi~~~~~~~~~~i~~~~~~gvd~  227 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF------D--AAINYKTDNVAERLRELCPEGVDV  227 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC------c--EEEECCCCCHHHHHHHHCCCCceE
Confidence            78999986  4588888888775222799999998877776653211      1  1221111111     011245787


Q ss_pred             heecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+..     +...  .+.+..+.|+++|+++...
T Consensus       228 vid~-----~g~~--~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         228 YFDN-----VGGE--ISDTVISQMNENSHIILCG  254 (345)
T ss_pred             EEEC-----CCcH--HHHHHHHHhccCCEEEEEe
Confidence            7642     2222  3578889999999998754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR00244 transcriptional regulator NrdR

Probab=83.43  E-value=0.63  Score=36.97  Aligned_cols=43  Identities=21%  Similarity=0.464  Sum_probs=27.0

Q ss_pred             eeccCCCccchhcCCCCc-cccccccCceecCCCCccccCccce
Q 021344           61 FSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDKTYSSKDNY  103 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~-~~~~i~~~~l~C~~C~~~~~~~~g~  103 (314)
                      +.||.|+.+....-.+.. .++...+.--.|..||..|...+-+
T Consensus         1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErv   44 (147)
T TIGR00244         1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFERA   44 (147)
T ss_pred             CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeeec
Confidence            469999997655443322 2233333456799999999665443

Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=83.33  E-value=9.9  Score=34.46  Aligned_cols=97  Identities=14%  Similarity=0.183  Sum_probs=57.8

Q ss_pred             ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC------CCCC
Q 021344          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFAS  235 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l------p~~~  235 (314)
                      ...++.+||..|+|. |..+..+++......+++++.++...+.+++.    +     ...++...-...      -...
T Consensus       164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~i~~~~~~  234 (347)
T cd05278         164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----G-----ATDIINPKNGDIVEQILELTGG  234 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----C-----CcEEEcCCcchHHHHHHHHcCC
Confidence            345678888888763 76777777764223788888888777666542    1     111221111110      0122


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +.+|+|+....      ....+.+..+.|+++|+++...
T Consensus       235 ~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         235 RGVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             CCCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence            46888775321      1246888889999999988654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK08265 short chain dehydrogenase; Provisional

Probab=83.32  E-value=9  Score=33.37  Aligned_cols=72  Identities=15%  Similarity=0.154  Sum_probs=44.9

Q ss_pred             CCCeEEEEcCccc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC---
Q 021344          166 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~---  234 (314)
                      .++++|-.|++.|  . .+..+++.|.  +|+.+|.++...+...+..       ..++.++.+|+.+..     +.   
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~   75 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVV   75 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHH
Confidence            3568898886554  2 4555666666  8999998876554443322       146788899987632     00   


Q ss_pred             --CCchhhheecch
Q 021344          235 --SGFVDAVHAGAA  246 (314)
Q Consensus       235 --~~~fD~V~~~~v  246 (314)
                        -+..|+++.+..
T Consensus        76 ~~~g~id~lv~~ag   89 (261)
T PRK08265         76 ARFGRVDILVNLAC   89 (261)
T ss_pred             HHhCCCCEEEECCC
Confidence              135687776543

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=83.30  E-value=6.5  Score=32.18  Aligned_cols=109  Identities=16%  Similarity=0.102  Sum_probs=63.2

Q ss_pred             EcCcccHHHHHHHHhCC-CCeEEEEeCCH--HHHHHHH---HHHHhcCCCCCCCe-EEEEecCCCCC----CCCCchhhh
Q 021344          173 VSCGSGLFSRKFAKSGT-YSGVVALDFSE--NMLRQCY---DFIKQDNTILTSNL-ALVRADVCRLP----FASGFVDAV  241 (314)
Q Consensus       173 iGcG~G~~~~~l~~~~~-~~~v~giD~s~--~~~~~a~---~~~~~~~~~~~~~v-~~~~~d~~~lp----~~~~~fD~V  241 (314)
                      ||=|.=.|+..|++... ..++++.-++.  ...+...   ++++.-.   ..++ -....|+.++.    ...+.||.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~---~~g~~V~~~VDat~l~~~~~~~~~~FDrI   79 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR---ELGVTVLHGVDATKLHKHFRLKNQRFDRI   79 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh---hcCCccccCCCCCcccccccccCCcCCEE
Confidence            56666678888888744 55666665443  2222221   2222211   1222 23445666553    356789999


Q ss_pred             eecchhccCC--------C-------HHHHHHHHHhhcccCcEEEEEecccCCCCCccchH
Q 021344          242 HAGAALHCWP--------S-------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR  287 (314)
Q Consensus       242 ~~~~vl~h~~--------d-------~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~  287 (314)
                      +.++-  |+.        +       ...+++.+.++|+++|.+.|+.....+ ...|...
T Consensus        80 iFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-y~~W~i~  137 (166)
T PF10354_consen   80 IFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP-YDSWNIE  137 (166)
T ss_pred             EEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-CccccHH
Confidence            97643  333        0       136899999999999999998855443 2344433

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=83.17  E-value=25  Score=32.04  Aligned_cols=99  Identities=18%  Similarity=0.178  Sum_probs=60.3

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-------
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-------  232 (314)
                      .....++.+||-.|+|. |..+..+++......+++++.++...+.+++.    +      .+.+. |..+..       
T Consensus       167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----g------a~~~i-~~~~~~~~~~l~~  235 (351)
T cd08233         167 RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----G------ATIVL-DPTEVDVVAEVRK  235 (351)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C------CCEEE-CCCccCHHHHHHH
Confidence            34456688888888754 66666677664223789999988888777552    1      11111 111111       


Q ss_pred             C-CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 F-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 ~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      . ..+.+|+|+-...     . ...+..+.+.|++||.++.....
T Consensus       236 ~~~~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~~  274 (351)
T cd08233         236 LTGGGGVDVSFDCAG-----V-QATLDTAIDALRPRGTAVNVAIW  274 (351)
T ss_pred             HhCCCCCCEEEECCC-----C-HHHHHHHHHhccCCCEEEEEccC
Confidence            1 1234777774321     1 23578888999999999876643

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]

Probab=83.17  E-value=0.58  Score=37.16  Aligned_cols=43  Identities=16%  Similarity=0.394  Sum_probs=27.1

Q ss_pred             eeccCCCccchhcCCCCc-cccccccCceecCCCCccccCccce
Q 021344           61 FSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDKTYSSKDNY  103 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~-~~~~i~~~~l~C~~C~~~~~~~~g~  103 (314)
                      +.||.|+..-.....+.. .+++..+.--.|.+||+.|..-+-.
T Consensus         1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~   44 (156)
T COG1327           1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERA   44 (156)
T ss_pred             CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhhee
Confidence            469999997655443322 2233334456799999999655433

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=83.10  E-value=9.6  Score=31.09  Aligned_cols=105  Identities=17%  Similarity=0.162  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhcc--CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          153 EEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       153 ~~~~~l~~~l~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      +..+.+.+.+..  .+..+|+=|||=+-.....- ...+..+++..|++.......            .+ .|+.-|...
T Consensus        10 ~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~------------~~-~F~fyD~~~   75 (162)
T PF10237_consen   10 ETAEFLARELLDGALDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFG------------GD-EFVFYDYNE   75 (162)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcC------------Cc-ceEECCCCC
Confidence            334444444433  34678999998775544333 133455899999987543211            23 455666543


Q ss_pred             ---CC--CCCCchhhheecchhccCCC-H-HHHHHHHHhhcccCcEEEEEe
Q 021344          231 ---LP--FASGFVDAVHAGAALHCWPS-P-SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 ---lp--~~~~~fD~V~~~~vl~h~~d-~-~~~l~~i~r~LkpGG~l~i~~  274 (314)
                         +|  + .++||+|++.=-+  +.. - .+....+..++|+++.+++.+
T Consensus        76 p~~~~~~l-~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T  123 (162)
T PF10237_consen   76 PEELPEEL-KGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT  123 (162)
T ss_pred             hhhhhhhc-CCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence               22  2 4689999984332  111 1 244455556668889999888

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.08  E-value=2.4  Score=38.06  Aligned_cols=99  Identities=14%  Similarity=0.185  Sum_probs=57.8

Q ss_pred             CeEEEEcCcc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-------CCCC-------CCCeEEEEecCCCC
Q 021344          168 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-------NTIL-------TSNLALVRADVCRL  231 (314)
Q Consensus       168 ~~iLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~~~-------~~~v~~~~~d~~~l  231 (314)
                      .+|--||+|+  +.++..++..|.  +|+.+|.+++.++.+++++...       +...       ..+++ ...|... 
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~-   81 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD-   81 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH-
Confidence            4788999996  446666777776  9999999999998877664431       1000       00111 1122211 


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhc-ccCcEEEEEe
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTT  274 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L-kpGG~l~i~~  274 (314)
                         -...|+|+.. +.|...-...++.++.+.+ +|+.++...+
T Consensus        82 ---~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snT  121 (286)
T PRK07819         82 ---FADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNT  121 (286)
T ss_pred             ---hCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence               1235655543 2232222346788888888 7777775555

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=82.96  E-value=4.9  Score=37.62  Aligned_cols=53  Identities=8%  Similarity=0.011  Sum_probs=39.4

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK  211 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~  211 (314)
                      .-.+.+...++++||-|.+|....+..+.. +| .+|++||+++......+=++.
T Consensus        26 vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   26 VDMEALNIGPDDRVLTITSAGCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHHHHhCCCCCCeEEEEccCCchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHH
Confidence            445677888899999998776666666554 43 399999999988777665443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK07576 short chain dehydrogenase; Provisional

Probab=82.88  E-value=11  Score=32.92  Aligned_cols=59  Identities=25%  Similarity=0.264  Sum_probs=38.8

Q ss_pred             CCCeEEEEcCcc--cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          166 QGGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       166 ~~~~iLDiGcG~--G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      +++++|-.|.+.  |. ++..++..+.  +|++++.+++.++...+.+...+    .++.++..|+.+
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~   69 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG----PEGLGVSADVRD   69 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC----CceEEEECCCCC
Confidence            467889888644  22 4455565565  89999998876665554444332    456788888865

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=82.85  E-value=13  Score=33.60  Aligned_cols=98  Identities=17%  Similarity=0.151  Sum_probs=60.3

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----C--CC
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----L--PF  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----l--p~  233 (314)
                      .....++.+||..|+|. |..+..+++.. +.+++++.-++...+.+++.-         .-+++...-..    +  ..
T Consensus       154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g---------~~~v~~~~~~~~~~~l~~~~  223 (337)
T cd08261         154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELG---------ADDTINVGDEDVAARLRELT  223 (337)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhC---------CCEEecCcccCHHHHHHHHh
Confidence            34456688999998775 77777777763 358999988888777775421         11111111111    0  01


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ....+|+++....      ....+.++.+.|+++|.++...
T Consensus       224 ~~~~vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         224 DGEGADVVIDATG------NPASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             CCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence            2345888875421      1345788899999999988654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]

Probab=82.83  E-value=0.81  Score=34.95  Aligned_cols=46  Identities=15%  Similarity=0.205  Sum_probs=28.1

Q ss_pred             ccccCCCCeeeccCCCccchh-cCCCCccccccccCceecCCCCccc
Q 021344           52 QTLELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        52 ~~~~~~~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      +..........||.||..-.. ...+.-..++.+...++|..||+.|
T Consensus        64 ~~~~~~~~~~~CpkCg~~ea~y~~~QtRsaDEp~T~Fy~C~~Cg~~w  110 (113)
T COG1594          64 GAKTLPTAKEKCPKCGNKEAYYWQLQTRSADEPETRFYKCTRCGYRW  110 (113)
T ss_pred             CccccccccccCCCCCCceeEEEeeehhccCCCceEEEEecccCCEe
Confidence            333333446789999995211 1111223456666789999999887

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=82.78  E-value=0.69  Score=30.58  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=19.0

Q ss_pred             CCeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      ...|.||.||..++..-..    =-.....++|++||..
T Consensus        23 ~~~F~CPnCG~~~I~RC~~----CRk~~~~Y~CP~CGF~   57 (59)
T PRK14890         23 AVKFLCPNCGEVIIYRCEK----CRKQSNPYTCPKCGFE   57 (59)
T ss_pred             cCEeeCCCCCCeeEeechh----HHhcCCceECCCCCCc
Confidence            4578899998873221100    0011246788888753

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=82.74  E-value=12  Score=34.63  Aligned_cols=99  Identities=16%  Similarity=0.210  Sum_probs=59.8

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CCCC
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFAS  235 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~~~  235 (314)
                      ....++.+||-.|+|. |..+..+++......++++|.++...+.+++.    +    . -.++..+-...     ....
T Consensus       182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g----~-~~~i~~~~~~~~~~v~~~~~  252 (365)
T cd08278         182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----G----A-THVINPKEEDLVAAIREITG  252 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----C-cEEecCCCcCHHHHHHHHhC
Confidence            3445678898888765 67777777764333699999998887776651    1    1 11121111110     0112


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ..+|+|+-.-     .. ...+..+.+.|+++|.++....
T Consensus       253 ~~~d~vld~~-----g~-~~~~~~~~~~l~~~G~~v~~g~  286 (365)
T cd08278         253 GGVDYALDTT-----GV-PAVIEQAVDALAPRGTLALVGA  286 (365)
T ss_pred             CCCcEEEECC-----CC-cHHHHHHHHHhccCCEEEEeCc
Confidence            3577776432     11 2357888999999999887653

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=82.69  E-value=0.67  Score=39.71  Aligned_cols=29  Identities=17%  Similarity=0.022  Sum_probs=16.1

Q ss_pred             hheecchhc-cCCCHHHHHHHHHhhcccCc
Q 021344          240 AVHAGAALH-CWPSPSNAVAEISRILRSGG  268 (314)
Q Consensus       240 ~V~~~~vl~-h~~d~~~~l~~i~r~LkpGG  268 (314)
                      +....+-|+ .+.+...+++-+.+++..++
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            344444443 35566677777777665443

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=82.64  E-value=1.6  Score=38.53  Aligned_cols=79  Identities=15%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHH
Q 021344          180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAE  259 (314)
Q Consensus       180 ~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~  259 (314)
                      +++.|.+.++..+|+|+|.++..++.|++.         .-+.-...+.+.  +  ..+|+|+..--+..   ...++++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~---------g~~~~~~~~~~~--~--~~~DlvvlavP~~~---~~~~l~~   64 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALEL---------GIIDEASTDIEA--V--EDADLVVLAVPVSA---IEDVLEE   64 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT---------TSSSEEESHHHH--G--GCCSEEEE-S-HHH---HHHHHHH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC---------CCeeeccCCHhH--h--cCCCEEEEcCCHHH---HHHHHHH
Confidence            467788888778999999999998888762         111222222111  1  24688887543332   2466778


Q ss_pred             HHhhcccCcEEEEEe
Q 021344          260 ISRILRSGGVFVGTT  274 (314)
Q Consensus       260 i~r~LkpGG~l~i~~  274 (314)
                      +...+++|+++.=..
T Consensus        65 ~~~~~~~~~iv~Dv~   79 (258)
T PF02153_consen   65 IAPYLKPGAIVTDVG   79 (258)
T ss_dssp             HHCGS-TTSEEEE--
T ss_pred             hhhhcCCCcEEEEeC
Confidence            888788877665444

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=82.48  E-value=2  Score=38.83  Aligned_cols=65  Identities=18%  Similarity=0.282  Sum_probs=50.1

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCchhhheecc
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHAGA  245 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~fD~V~~~~  245 (314)
                      +++|+=||.|.+..-+...|. .-+.++|+++.+.+..+.+.        .  ....+|+.++.   ++. .+|+++...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence            689999999999999999983 46889999999988888764        2  77888987764   333 489888753

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>cd05281 TDH Threonine dehydrogenase

Probab=82.17  E-value=13  Score=33.79  Aligned_cols=95  Identities=20%  Similarity=0.179  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CCCCch
Q 021344          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGFV  238 (314)
Q Consensus       165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~~~~f  238 (314)
                      .++.+||-.|+|. |..+..+++.....++++++-++.....+++.    +    . -.++...-....     ...+.+
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g----~-~~~~~~~~~~~~~~~~~~~~~~v  232 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----G----A-DVVINPREEDVVEVKSVTDGTGV  232 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----C----c-ceeeCcccccHHHHHHHcCCCCC
Confidence            4577888888765 66777777765322688888777766666541    1    1 011111111110     122457


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+|+..-.      ....+.++.+.|+++|.++...
T Consensus       233 d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g  262 (341)
T cd05281         233 DVVLEMSG------NPKAIEQGLKALTPGGRVSILG  262 (341)
T ss_pred             CEEEECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence            88775321      1345778889999999998764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK06181 short chain dehydrogenase; Provisional

Probab=82.01  E-value=11  Score=32.69  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=44.5

Q ss_pred             CeEEEEcCccc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C-----
Q 021344          168 GLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A-----  234 (314)
Q Consensus       168 ~~iLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~-----  234 (314)
                      .++|-.|+..|  . ++..+++.+.  +|++++.++...+...+.+...+    .++.++.+|+.+..-     .     
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~   75 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG----GEALVVPTDVSDAEACERLIEAAVAR   75 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46787775442  2 3334455554  89999998876665555554433    578888899866320     0     


Q ss_pred             CCchhhheecch
Q 021344          235 SGFVDAVHAGAA  246 (314)
Q Consensus       235 ~~~fD~V~~~~v  246 (314)
                      -+..|+|+....
T Consensus        76 ~~~id~vi~~ag   87 (263)
T PRK06181         76 FGGIDILVNNAG   87 (263)
T ss_pred             cCCCCEEEECCC
Confidence            124787776543

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=81.98  E-value=0.61  Score=38.71  Aligned_cols=34  Identities=26%  Similarity=0.621  Sum_probs=24.9

Q ss_pred             cCCCCeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      ......+.||.|+......+        .....+.|+.||..
T Consensus       112 e~~~~~Y~Cp~C~~rytf~e--------A~~~~F~Cp~Cg~~  145 (178)
T PRK06266        112 EENNMFFFCPNCHIRFTFDE--------AMEYGFRCPQCGEM  145 (178)
T ss_pred             ccCCCEEECCCCCcEEeHHH--------HhhcCCcCCCCCCC
Confidence            33456899999998776543        23468999999855

>PRK08324 short chain dehydrogenase; Validated

Probab=81.96  E-value=13  Score=37.81  Aligned_cols=103  Identities=22%  Similarity=0.225  Sum_probs=62.9

Q ss_pred             CCCeEEEEcCcc--cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC---
Q 021344          166 QGGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (314)
Q Consensus       166 ~~~~iLDiGcG~--G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~---  234 (314)
                      .++++|-.|++.  |. ++..+++.|.  +|+.+|.++..++.+.+.+...     .++.++.+|+.+..     +.   
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~-----~~v~~v~~Dvtd~~~v~~~~~~~~  493 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP-----DRALGVACDVTDEAAVQAAFEEAA  493 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc-----CcEEEEEecCCCHHHHHHHHHHHH
Confidence            457899998644  33 4455555665  8999999987766655543321     36888889986532     10   


Q ss_pred             --CCchhhheecchhccCCC-------------------HHHHHHHHHhhccc---CcEEEEEec
Q 021344          235 --SGFVDAVHAGAALHCWPS-------------------PSNAVAEISRILRS---GGVFVGTTF  275 (314)
Q Consensus       235 --~~~fD~V~~~~vl~h~~d-------------------~~~~l~~i~r~Lkp---GG~l~i~~~  275 (314)
                        -+.+|+|+.....-....                   ...+++.+.+.+++   ||.+++...
T Consensus       494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence              135788876554322110                   23456666777766   677776553

>KOG2691 consensus RNA polymerase II subunit 9 [Transcription]

Probab=81.92  E-value=0.95  Score=33.67  Aligned_cols=39  Identities=15%  Similarity=0.242  Sum_probs=25.4

Q ss_pred             CeeeccCCCccchh-cCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ..-.||.||..... ....+...+..++=.+.|.+|+|.|
T Consensus        72 s~~~C~~C~~~eavffQ~~~~r~d~~m~l~yvC~~C~h~w  111 (113)
T KOG2691|consen   72 SDKHCPKCGHREAVFFQAQTRRADEAMRLFYVCCSCGHRW  111 (113)
T ss_pred             ccccCCccCCcceEEEecccccccceEEEEEEeccccccc
Confidence            56679999985322 1222334455555678899999987

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=81.73  E-value=6.9  Score=34.90  Aligned_cols=59  Identities=12%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  213 (314)
                      .+..+..... ...++..|||.=+|+|..+......+.  .++|+|+++..++.+.+++...
T Consensus       209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhh
Confidence            3444444444 455789999999999999998888876  9999999999999999988764

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=81.72  E-value=18  Score=32.80  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=58.8

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCc
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF  237 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~  237 (314)
                      +...++.+||-.|+|. |..+..+++.. +.+++.++.++...+.+++.    +    . -.++...-....   ...+.
T Consensus       159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~----g----~-~~~i~~~~~~~~~~~~~~~~  228 (333)
T cd08296         159 SGAKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARKL----G----A-HHYIDTSKEDVAEALQELGG  228 (333)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHc----C----C-cEEecCCCccHHHHHHhcCC
Confidence            3556678999999765 66666666664 34899999998877777551    1    1 111111111100   00124


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +|+|+..     ... ...+....+.|+++|.++....
T Consensus       229 ~d~vi~~-----~g~-~~~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         229 AKLILAT-----APN-AKAISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             CCEEEEC-----CCc-hHHHHHHHHHcccCCEEEEEec
Confidence            6777642     111 3467888999999999987653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=81.64  E-value=5.6  Score=30.33  Aligned_cols=89  Identities=19%  Similarity=0.247  Sum_probs=56.6

Q ss_pred             CCeEEEEcCccc-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-CCchhhheec
Q 021344          167 GGLLVDVSCGSG-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG  244 (314)
Q Consensus       167 ~~~iLDiGcG~G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~  244 (314)
                      .++|+++|-|-= ..+..|+++|.  .++++|+.+.   .+           ...++++.-|+.+.... -...|+|.+.
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~a-----------~~g~~~v~DDitnP~~~iY~~A~lIYSi   77 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---TA-----------PEGLRFVVDDITNPNISIYEGADLIYSI   77 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---cC-----------cccceEEEccCCCccHHHhhCccceeec
Confidence            459999998763 35677788775  9999999886   11           25688999998773311 1246777764


Q ss_pred             chhccCCCHHHHHHHHHhhccc-CcEEEEEeccc
Q 021344          245 AALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR  277 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~Lkp-GG~l~i~~~~~  277 (314)
                            ..|..+.+.+.++-+. |..+++.....
T Consensus        78 ------RpppEl~~~ildva~aVga~l~I~pL~G  105 (129)
T COG1255          78 ------RPPPELQSAILDVAKAVGAPLYIKPLTG  105 (129)
T ss_pred             ------CCCHHHHHHHHHHHHhhCCCEEEEecCC
Confidence                  2344445555554443 45566655443

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=81.62  E-value=0.74  Score=37.42  Aligned_cols=34  Identities=21%  Similarity=0.460  Sum_probs=24.9

Q ss_pred             cCCCCeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      ......+.||.|+......+        .....+.|+.||..
T Consensus       104 e~~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~  137 (158)
T TIGR00373       104 ETNNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM  137 (158)
T ss_pred             ccCCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence            34557899999998775533        23458999999855

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=81.50  E-value=4.8  Score=36.04  Aligned_cols=41  Identities=29%  Similarity=0.522  Sum_probs=31.8

Q ss_pred             CeEEEEcCcc-c-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH
Q 021344          168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFI  210 (314)
Q Consensus       168 ~~iLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~  210 (314)
                      .+|.-||+|. | .++..++..|.  +|+.+|.++..++.+++.+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i   46 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELI   46 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHH
Confidence            4688899996 4 46666677765  8999999999988776543

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=81.39  E-value=21  Score=32.90  Aligned_cols=100  Identities=17%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC--CC-----C
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RL-----P  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~--~l-----p  232 (314)
                      .....++.+||-.|+|. |..+..+++......+++++.++...+.+++ +..        ..++...-.  ..     .
T Consensus       178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~--------~~~v~~~~~~~~~~~~l~~  248 (365)
T cd05279         178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGA--------TECINPRDQDKPIVEVLTE  248 (365)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCC--------CeecccccccchHHHHHHH
Confidence            33456688888888765 6666666666433358899988888777754 211        111111101  00     0


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcc-cCcEEEEEec
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILR-SGGVFVGTTF  275 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lk-pGG~l~i~~~  275 (314)
                      ...+.+|+|+..     ... ...+....+.|+ ++|.++....
T Consensus       249 ~~~~~~d~vid~-----~g~-~~~~~~~~~~l~~~~G~~v~~g~  286 (365)
T cd05279         249 MTDGGVDYAFEV-----IGS-ADTLKQALDATRLGGGTSVVVGV  286 (365)
T ss_pred             HhCCCCcEEEEC-----CCC-HHHHHHHHHHhccCCCEEEEEec
Confidence            112357777642     222 245778888999 9999987653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=81.16  E-value=19  Score=32.56  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=58.8

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---C-CC-
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L-PF-  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---l-p~-  233 (314)
                      .....++.+||-.|+|. |..+..+++.. +.+ +++++-++...+.+++.    +    . ..++...-..   + .. 
T Consensus       154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~----g----~-~~~~~~~~~~~~~~~~~~  223 (343)
T cd08236         154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAREL----G----A-DDTINPKEEDVEKVRELT  223 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc----C----C-CEEecCccccHHHHHHHh
Confidence            34455678899998766 77777777664 234 99999888776666431    1    1 1112111000   0 11 


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ....+|+|+...      .....+..+.+.|+++|.++...
T Consensus       224 ~~~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         224 EGRGADLVIEAA------GSPATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence            123488887531      12346788899999999988765

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=81.03  E-value=27  Score=32.09  Aligned_cols=95  Identities=20%  Similarity=0.203  Sum_probs=56.3

Q ss_pred             CCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC------CCCCCc
Q 021344          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASGF  237 (314)
Q Consensus       165 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l------p~~~~~  237 (314)
                      .++.+||-.|+|. |..+..+++......+++++.++...+.+++.    +    . ..++..+-...      ......
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g----~-~~v~~~~~~~~~~~l~~~~~~~~  256 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----G----A-THTVNAAKEDAVAAIREITGGRG  256 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----C----C-ceEecCCcccHHHHHHHHhCCCC
Confidence            5677888777653 66666677664322399999888877766541    1    0 11222111110      012345


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +|+|+..     +... ..+.++.+.|+++|.++...
T Consensus       257 ~d~vld~-----vg~~-~~~~~~~~~l~~~G~~v~~g  287 (367)
T cd08263         257 VDVVVEA-----LGKP-ETFKLALDVVRDGGRAVVVG  287 (367)
T ss_pred             CCEEEEe-----CCCH-HHHHHHHHHHhcCCEEEEEc
Confidence            7877643     2222 35788889999999998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=80.88  E-value=1.3  Score=23.69  Aligned_cols=9  Identities=33%  Similarity=0.992  Sum_probs=6.3

Q ss_pred             CceecCCCC
Q 021344           86 SGFKCRKCD   94 (314)
Q Consensus        86 ~~l~C~~C~   94 (314)
                      ..+.|++||
T Consensus        15 v~f~CPnCG   23 (24)
T PF07754_consen   15 VPFPCPNCG   23 (24)
T ss_pred             ceEeCCCCC
Confidence            467777776

It is likely to bind zinc via its four well-conserved cysteine residues.

>TIGR03831 YgiT_finger YgiT-type zinc finger domain

Probab=80.71  E-value=0.93  Score=28.09  Aligned_cols=13  Identities=23%  Similarity=0.813  Sum_probs=9.9

Q ss_pred             CceecCCCCcccc
Q 021344           86 SGFKCRKCDKTYS   98 (314)
Q Consensus        86 ~~l~C~~C~~~~~   98 (314)
                      ..+.|++||..+.
T Consensus        31 p~~~C~~CGE~~~   43 (46)
T TIGR03831        31 PALVCPQCGEEYL   43 (46)
T ss_pred             CccccccCCCEee
Confidence            4567999998764

This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=80.68  E-value=17  Score=27.19  Aligned_cols=88  Identities=16%  Similarity=0.110  Sum_probs=53.1

Q ss_pred             EEEcCcccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCCCchhhheec
Q 021344          171 VDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAG  244 (314)
Q Consensus       171 LDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~~~~~fD~V~~~  244 (314)
                      +=+|+|  .++..+++..  ...+++.+|.++..++.+++          ..+.++.+|..+..    ..-++.|.|++.
T Consensus         2 vI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    2 VIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELRE----------EGVEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----------TTSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             EEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----------cccccccccchhhhHHhhcCccccCEEEEc
Confidence            345554  4444443331  12489999999999888887          45889999997642    112346655553


Q ss_pred             chhccCCCHH--HHHHHHHhhcccCcEEEEEec
Q 021344          245 AALHCWPSPS--NAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       245 ~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .     ++..  ..+....+.+.|...++....
T Consensus        70 ~-----~~d~~n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   70 T-----DDDEENLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             S-----SSHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred             c-----CCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            2     2343  344455566778888887763

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]

Probab=80.64  E-value=0.52  Score=34.41  Aligned_cols=41  Identities=17%  Similarity=0.334  Sum_probs=27.4

Q ss_pred             CCCeeeccCCCccc-hhcCCCCccccccccCceecCCCCccc
Q 021344           57 EGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        57 ~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ....-.||.||.+- .....+....++.+...++|.+|++.|
T Consensus        62 ~~t~~~Cp~Cgh~rayF~qlQtRSADEPmT~FYkC~~C~~~W  103 (105)
T KOG2906|consen   62 DQTEATCPTCGHERAYFMQLQTRSADEPMTTFYKCCKCKHRW  103 (105)
T ss_pred             hhccCcCCCCCCCceEEEEeeeccCCCcHhHhhhhhcccccc
Confidence            34566799999862 112222334567777889999999886

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=80.59  E-value=19  Score=33.45  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=58.8

Q ss_pred             ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe------cC----CCC
Q 021344          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA------DV----CRL  231 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~------d~----~~l  231 (314)
                      ...++.+||-.|+|. |..+..+++......+++++.++...+.+++.    +    .. .++..      +.    ..+
T Consensus       200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~----g----~~-~~v~~~~~~~~~~~~~v~~~  270 (384)
T cd08265         200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM----G----AD-YVFNPTKMRDCLSGEKVMEV  270 (384)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C----CC-EEEcccccccccHHHHHHHh
Confidence            445678888888765 66666666664333799999888766666552    1    11 11111      00    011


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                       .....+|+|+..     ..++...+.++.+.|+++|+++...
T Consensus       271 -~~g~gvDvvld~-----~g~~~~~~~~~~~~l~~~G~~v~~g  307 (384)
T cd08265         271 -TKGWGADIQVEA-----AGAPPATIPQMEKSIAINGKIVYIG  307 (384)
T ss_pred             -cCCCCCCEEEEC-----CCCcHHHHHHHHHHHHcCCEEEEEC
Confidence             112357877643     3344566888899999999998764

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.52  E-value=8.4  Score=34.26  Aligned_cols=98  Identities=15%  Similarity=0.173  Sum_probs=56.9

Q ss_pred             eEEEEcCcc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-------cCCCC-------CCCeEEEEecCCCCC
Q 021344          169 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTIL-------TSNLALVRADVCRLP  232 (314)
Q Consensus       169 ~iLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~~~-------~~~v~~~~~d~~~lp  232 (314)
                      +|--||+|.  +.++..++..+.  +|+++|.+++.++.++++++.       .+...       ..++.+ ..|...  
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--   79 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--   79 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH--
Confidence            678899996  556777777765  899999999988765533222       11000       002221 222211  


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                        -+..|+|+..- -+.+.-...+++++.+.++|+..+...+
T Consensus        80 --~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s~t  118 (282)
T PRK05808         80 --LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILATNT  118 (282)
T ss_pred             --hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence              13467766532 1221122478999999999988774333

>PRK10083 putative oxidoreductase; Provisional

Probab=80.41  E-value=20  Score=32.40  Aligned_cols=97  Identities=12%  Similarity=0.080  Sum_probs=57.3

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----C
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----F  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~  233 (314)
                      .....++.+||-.|+|. |..+..+++.  | ...++++|.++...+.+++.          .++.+. +..+..    .
T Consensus       155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~~----------Ga~~~i-~~~~~~~~~~~  222 (339)
T PRK10083        155 RTGPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKES----------GADWVI-NNAQEPLGEAL  222 (339)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHh----------CCcEEe-cCccccHHHHH
Confidence            34456788999999765 6666667663  4 23588899999888777652          111111 111100    0


Q ss_pred             CCC--chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 ASG--FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ~~~--~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ...  .+|+|+.     .... ...+.+..+.|+++|.++....
T Consensus       223 ~~~g~~~d~vid-----~~g~-~~~~~~~~~~l~~~G~~v~~g~  260 (339)
T PRK10083        223 EEKGIKPTLIID-----AACH-PSILEEAVTLASPAARIVLMGF  260 (339)
T ss_pred             hcCCCCCCEEEE-----CCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence            111  2344443     2222 2357888899999999988654

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=80.39  E-value=0.65  Score=39.49  Aligned_cols=92  Identities=13%  Similarity=0.080  Sum_probs=66.1

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-  232 (314)
                      +...+.+++.+.++...+|.--|.|..+..+.+..+..+++++|-+|-+-+.|+....+.-   ...+..+.+.+..++ 
T Consensus        31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~---~~~l~a~Lg~Fs~~~~  107 (303)
T KOG2782|consen   31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELM---HPTLKAVLGNFSYIKS  107 (303)
T ss_pred             ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhc---chhHHHHHhhhHHHHH
Confidence            3456677888889999999999999999999998888899999999988888877654321   123333444444332 


Q ss_pred             ------CCCCchhhheecchhc
Q 021344          233 ------FASGFVDAVHAGAALH  248 (314)
Q Consensus       233 ------~~~~~fD~V~~~~vl~  248 (314)
                            +.+.++|.|++.....
T Consensus       108 l~~~~gl~~~~vDGiLmDlGcS  129 (303)
T KOG2782|consen  108 LIADTGLLDVGVDGILMDLGCS  129 (303)
T ss_pred             HHHHhCCCcCCcceEEeecCcc
Confidence                  4567788888755443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=80.33  E-value=12  Score=33.64  Aligned_cols=92  Identities=13%  Similarity=0.134  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .+.+++-+|.|. |..+...++.. +.+|+++|.++...+.++.          ...+++  ++..+.-.-..+|+|+..
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~----------~G~~~~--~~~~l~~~l~~aDiVI~t  217 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITE----------MGLSPF--HLSELAEEVGKIDIIFNT  217 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----------cCCeee--cHHHHHHHhCCCCEEEEC
Confidence            578999999987 54444443332 3499999999876655543          122222  111221112358998864


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      -     +. ..+-++..+.++||++++-....
T Consensus       218 ~-----p~-~~i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        218 I-----PA-LVLTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             C-----Ch-hhhhHHHHHcCCCCcEEEEEccC
Confidence            2     21 22345666788998887754433

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=80.09  E-value=4.3  Score=33.65  Aligned_cols=94  Identities=13%  Similarity=0.152  Sum_probs=51.0

Q ss_pred             HHHHHhccCCCC-eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---
Q 021344          157 MAQEYFKSAQGG-LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (314)
Q Consensus       157 ~l~~~l~~~~~~-~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---  232 (314)
                      .+.+++...++. .|+.+|||-=.....+....+...++-+|. +++++.-++.++..+.....+.+++.+|+.+..   
T Consensus        68 ~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~  146 (183)
T PF04072_consen   68 AVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWID  146 (183)
T ss_dssp             HHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHH
T ss_pred             HHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHH
Confidence            444455433444 899999998777666766544457777776 556666666666542100123557888987622   


Q ss_pred             ------CCCCchhhheecchhccCC
Q 021344          233 ------FASGFVDAVHAGAALHCWP  251 (314)
Q Consensus       233 ------~~~~~fD~V~~~~vl~h~~  251 (314)
                            +..+.--++++-.++.+++
T Consensus       147 ~L~~~g~~~~~ptl~i~Egvl~Yl~  171 (183)
T PF04072_consen  147 ALPKAGFDPDRPTLFIAEGVLMYLS  171 (183)
T ss_dssp             HHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred             HHHHhCCCCCCCeEEEEcchhhcCC
Confidence                  1122333566666777764

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]

Probab=80.06  E-value=36  Score=31.39  Aligned_cols=118  Identities=15%  Similarity=0.139  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHH------HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFS------RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR  225 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~------~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~  225 (314)
                      +.....+.+.+... ...++-.=||.|-.-      ......|.  .|--.-+--+.+-....+++..-  ....|....
T Consensus       103 ~~as~~l~q~i~~k-~~~lv~AV~GaGKTEMif~~i~~al~~G~--~vciASPRvDVclEl~~Rlk~aF--~~~~I~~Ly  177 (441)
T COG4098         103 KKASNQLVQYIKQK-EDTLVWAVTGAGKTEMIFQGIEQALNQGG--RVCIASPRVDVCLELYPRLKQAF--SNCDIDLLY  177 (441)
T ss_pred             HHHHHHHHHHHHhc-CcEEEEEecCCCchhhhHHHHHHHHhcCC--eEEEecCcccchHHHHHHHHHhh--ccCCeeeEe
Confidence            33445566666654 446777778888532      12222342  44333332222222223333321  235677777


Q ss_pred             ecCCCC---C-----------CCCCchhhheecch--hccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          226 ADVCRL---P-----------FASGFVDAVHAGAA--LHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       226 ~d~~~l---p-----------~~~~~fD~V~~~~v--l~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +|-...   |           | .+.||+++...|  +-+..|+ .+--.+.+..|++|..+..+-.
T Consensus       178 g~S~~~fr~plvVaTtHQLlrF-k~aFD~liIDEVDAFP~~~d~-~L~~Av~~ark~~g~~IylTAT  242 (441)
T COG4098         178 GDSDSYFRAPLVVATTHQLLRF-KQAFDLLIIDEVDAFPFSDDQ-SLQYAVKKARKKEGATIYLTAT  242 (441)
T ss_pred             cCCchhccccEEEEehHHHHHH-HhhccEEEEeccccccccCCH-HHHHHHHHhhcccCceEEEecC
Confidence            775431   1           2 246999998665  3333333 4445566778888877766643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	314
3dlc_A	219	Crystal Structure Of A Putative S-Adenosyl-L-Methio		9e-08
1vl5_A	260	Crystal Structure Of A Putative Methyltransferase (		3e-05
3ccf_A	279	Crystal Structure Of Putative Methyltransferase (Yp		3e-05
3l8d_A	242	Crystal Structure Of Methyltransferase From Bacillu		5e-05
1p91_A	269	Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G7		8e-04
3mgg_A	276	Crystal Structure Of Methyl Transferase From Methan		9e-04

>pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227
           G  +D+  G G  S   AK   +S + ALDFS++        I   N  L   + +V+ D
Sbjct: 45  GTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHXNEIALKNIADAN--LNDRIQIVQGD 101
Query: 228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTG 286
           V  +P    + D + +  ++  W   + A  EI RIL+SGG  ++G  F       S++ 
Sbjct: 102 VHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISA 161
Query: 287 RVLRE 291
             +R+
Sbjct: 162 EXIRK 166

>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++DV+ G G  +  FA       VVA D +E++L+    FI+ +       +  V+ D  
Sbjct: 41  VLDVATGGGHVANAFAP--FVKKVVAFDLTEDILKVARAFIEGNGH---QQVEYVQGDAE 95
Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
           + PF       V    A H +P+P++ V+E  R+L+ GG
Sbjct: 96  QXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGG 134

>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++D+ CG+G  + K A+SG  + V+  D +   + +     +Q+   L  ++A  R 
Sbjct: 58  GEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATXIEKA----RQNYPHLHFDVADARN 111
Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                P     +DAV + A LH    P  A+A I + L+SGG FV
Sbjct: 112 FRVDKP-----LDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFV 151

>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++DV CG G  + K +++G  +  V +D SE  ++      K        +L+ ++ D+ 
Sbjct: 57  VLDVGCGDGYGTYKLSRTGYKA--VGVDISEVXIQ------KGKERGEGPDLSFIKGDLS 108
Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
            LPF +   +A+ A  +L     P  A+ EI R+L+S G
Sbjct: 109 SLPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDG 147

>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745 Methyltransferase (Northeast Structural Genomics Consortium Target Er19) Length = 269

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 43/249 (17%)
Query: 61  FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
           FSCP+C++PL R+           ++ + C +  +   +K+ Y++L             P
Sbjct: 3   FSCPLCHQPLSRE-----------KNSYICPQRHQFDXAKEGYVNLL------------P 39
Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFK-SAQGGLLVDVSCGSGL 179
              +  R P  S    +  R+ F  +G   P  +  +AQ   +   +   ++D+ CG G 
Sbjct: 40  VQHKRSRDPGDSAEXXQA-RRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGY 98
Query: 180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239
           ++  FA +        LD S+  ++       Q    + S+         RLPF+    D
Sbjct: 99  YTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH--------RLPFSDTSXD 150
Query: 240 AVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGRVLREVMLIRIK 298
           A+    A      P  A  E++R+++ GG V   T   R+     L G +  EV L    
Sbjct: 151 AIIRIYA------PCKA-EELARVVKPGGWVITATPGPRHL--XELKGLIYNEVHLHAPH 201
Query: 299 SHLLSKCTL 307
           +  L   TL
Sbjct: 202 AEQLEGFTL 210

>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  +++  CG G  +   AK+   + + ++D S   L +  +  +++      N+  ++A
Sbjct: 38  GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI---KNVKFLQA 94
Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVF 270
           ++  LPF     D +     L    SP  A+  + ++L+ GG  
Sbjct: 95  NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTI 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
3ege_A	261	Putative methyltransferase from antibiotic biosyn	6e-24
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-22
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	6e-22
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-21
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-21
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-20
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	8e-20
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	1e-19
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	2e-19
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-19
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	4e-19
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	5e-19
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	5e-19
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-18
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-18
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	3e-18
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	7e-18
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	9e-18
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-17
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	3e-17
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	5e-17
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	5e-17
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	5e-17
3f4k_A	257	Putative methyltransferase; structural genomics, P	7e-17
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	2e-16
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	3e-16
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	7e-16
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	8e-16
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	3e-15
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	5e-15
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	1e-13
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	1e-13
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-13
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	7e-13
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-12
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	1e-12
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-12
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	4e-12
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	5e-12
3ocj_A	305	Putative exported protein; structural genomics, PS	6e-12
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	3e-11
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	6e-11
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	7e-11
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	3e-10
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	4e-10
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	5e-10
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	8e-10
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	9e-10
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	1e-09
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	1e-09
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	1e-09
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	3e-09
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	8e-09
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	1e-08
3cc8_A	230	Putative methyltransferase; structural genomics, j	2e-08
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	2e-08
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	8e-08
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	9e-08
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	2e-07
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	6e-07
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	8e-07
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	2e-06
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	2e-06
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	4e-06
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	1e-05
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-05
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	2e-05
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	2e-05
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	6e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-04
2p7i_A	250	Hypothetical protein; putative methyltransferase,	1e-04

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 97.3 bits (242), Expect = 6e-24
 Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 11/141 (7%)

Query: 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ 205
                               +G ++ D+  G+G +S   A  G +  V A++ S  M +Q
Sbjct: 14  QTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF--VYAVEPSIVMRQQ 71

Query: 206 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILR 265
                          +         L      VD V +  A+H +     +  E+ RI+R
Sbjct: 72  AVVH---------PQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR 122

Query: 266 SGGVFVGTTFLRYTSSTSLTG 286
            G + + T  +R      L  
Sbjct: 123 DGTIVLLTFDIRLAQRIWLYD 143

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 92.2 bits (229), Expect = 2e-22
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
             G  +D+  G G  S   AK   +S + ALDFS++M       I   N  L   + +V+
Sbjct: 43  TAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIALKNIADAN--LNDRIQIVQ 99

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
            DV  +P    + D + +  ++  W   + A  EI RIL+SGG   
Sbjct: 100 GDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTY 145

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 91.9 bits (228), Expect = 6e-22
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 8/150 (5%)

Query: 145 RSGFPGPDEEF--KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENM 202
           R+  P    +    MA       +  + +++  G+G  +      G     +ALD    M
Sbjct: 16  RAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYR--YIALDADAAM 73

Query: 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISR 262
           L       +Q    +   + +V+AD   +P     V  V      H  P     +AE  R
Sbjct: 74  LEVF----RQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIR 129

Query: 263 ILRSGGVFVGTTFLRYTSSTSLTGRVLREV 292
           +L+ GG  +        S         R  
Sbjct: 130 VLKPGGALLEGWDQAEASPEWTLQERWRAF 159

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 90.3 bits (224), Expect = 1e-21
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           DV CG G  + K +++G     V +D SE M+++     K+       +L+ ++ D+  L
Sbjct: 59  DVGCGDGYGTYKLSRTGYK--AVGVDISEVMIQKG----KERG--EGPDLSFIKGDLSSL 110

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
           PF +   +A+ A  +L     P  A+ EI R+L+S G       
Sbjct: 111 PFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL 154

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 90.0 bits (223), Expect = 4e-21
 Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 3/105 (2%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  +++  CG G  +   AK+   + + ++D S   L +  +  +++      N+  ++A
Sbjct: 38  GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI---KNVKFLQA 94

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           ++  LPF     D +     L    SP  A+  + ++L+ GG   
Sbjct: 95  NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTIT 139

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 86.8 bits (215), Expect = 3e-20
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 7/134 (5%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++D+  G+G  +  F+        + +D ++ M+     F ++       N+   + 
Sbjct: 22  EHRVLDIGAGAGHTALAFSPYVQE--CIGVDATKEMVEVASSFAQEKGV---ENVRFQQG 76

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG 286
               LPF     D +    A H +     AV E++R+L+  G F+            +  
Sbjct: 77  TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED--PVLD 134

Query: 287 RVLREVMLIRIKSH 300
             +  +  +R  SH
Sbjct: 135 EFVNHLNRLRDPSH 148

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 84.8 bits (210), Expect = 8e-20
 Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  L++V  G+G + R+          V ++ SE ML                    VRA
Sbjct: 37  GESLLEVGAGTGYWLRRLPYPQ----KVGVEPSEAMLAVGRR--------RAPEATWVRA 84

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG 286
               LPF     D V     L         + E  R+LR GG  V       +   +L  
Sbjct: 85  WGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYR 144

Query: 287 RVLREVMLIRIKSHLLSK 304
           R+  + +L   ++  L++
Sbjct: 145 RLGEKGVLPWAQARFLAR 162

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 85.6 bits (212), Expect = 1e-19
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++DV+ G G  +  FA       VVA D +E++L+    FI+ +       +  V+ 
Sbjct: 38  NEEVLDVATGGGHVANAFAPFVKK--VVAFDLTEDILKVARAFIEGNGH---QQVEYVQG 92

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG 286
           D  ++PF       V    A H +P+P++ V+E  R+L+ GG  +        +      
Sbjct: 93  DAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN--DAFD 150

Query: 287 RVLREVMLIRIKSH 300
                V   R  SH
Sbjct: 151 VFYNYVEKERDYSH 164

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 83.8 bits (207), Expect = 2e-19
 Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLR 204
           ++    P    +  +   +S     ++D   G  L          Y     ++ S+  L+
Sbjct: 3   KTIIRQPQLY-RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLK 60

Query: 205 QCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISR 262
           +  +F +++N      L + + D+ +LPF    +  V++   +          A+ EI R
Sbjct: 61  KAENFSRENN----FKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKR 116

Query: 263 ILRSGGVFVGTTFLR 277
           +L+ GG+        
Sbjct: 117 VLKPGGLACINFLTT 131

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 82.0 bits (203), Expect = 3e-19
 Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           + G++VD  CG+G + +   +    + +  +D +   L++           +      V 
Sbjct: 17  KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKE-----------VKEKFDSVI 63

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                       VD +    + H      + ++E+ RIL+  G  +
Sbjct: 64  TLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVI 109

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 83.7 bits (207), Expect = 4e-19
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
            G  +VD+ CG G F R   + G  S V+ LD SE ML +     +       + +   R
Sbjct: 43  GGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARA----RAAGP--DTGITYER 95

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
           AD+ +L       D  ++  ALH     +     + + L  GG FV +T 
Sbjct: 96  ADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE 145

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 84.2 bits (208), Expect = 5e-19
 Identities = 40/215 (18%), Positives = 77/215 (35%), Gaps = 38/215 (17%)

Query: 61  FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
           FSCP+C++PL R+            + + C +  +   +K+ Y++L  +   +       
Sbjct: 3   FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS 51

Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLF 180
           A     R  F+   + +  R                  +E        +L D+ CG G +
Sbjct: 52  AEMMQARRAFLDAGHYQPLRDAIVA-----------QLRERLDDKATAVL-DIGCGEGYY 99

Query: 181 SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240
           +  FA +        LD S+  ++                +    A   RLPF+   +DA
Sbjct: 100 THAFADALPEITTFGLDVSKVAIKAA--------AKRYPQVTFCVASSHRLPFSDTSMDA 151

Query: 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
           +          +P     E++R+++ GG  +  T 
Sbjct: 152 I------IRIYAPCK-AEELARVVKPGGWVITATP 179

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 83.8 bits (207), Expect = 5e-19
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
               ++D+ CG G      A+ G    V+ +D SE ML +     K+  T  +  +   +
Sbjct: 44  NQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEA----KRKTT--SPVVCYEQ 96

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274
             +  +       + V +  ALH   S  +   ++   L+S G F+ + 
Sbjct: 97  KAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSV 145

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 144 NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENM 202
           +R     P++  K     F   +G  ++DV  G+G +    +K     G V A+D  E M
Sbjct: 19  SRLELFDPEKVLKE----FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEM 74

Query: 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISR 262
           +   ++ + +       N+ +++++  ++P     VD +      H    P   + E+ R
Sbjct: 75  VNYAWEKVNKLGL---KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKR 131

Query: 263 ILRSGGVFV 271
           + +      
Sbjct: 132 VAKPFAYLA 140

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 81.5 bits (201), Expect = 2e-18
 Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 16/144 (11%)

Query: 138 GWRQNFNRSG--FPGPDEEFKMAQEYFKS------AQGGLLVDVSCGSGLFSRKFAKSGT 189
           G+++ +           +E++   E  +        + G ++D++CG G FS      G 
Sbjct: 2   GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG- 60

Query: 190 YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 249
           +  VV +D SE+M+R+  ++ K       SN+  +  D  +L F     D V    ++  
Sbjct: 61  FE-VVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115

Query: 250 WPS--PSNAVAEISRILRSGGVFV 271
           +     +    E+ R+L+  G F+
Sbjct: 116 FEPLELNQVFKEVRRVLKPSGKFI 139

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 81.0 bits (200), Expect = 3e-18
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 16/113 (14%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
            G  V++  G+G F+            + ++ SE M         +        + +++ 
Sbjct: 48  EGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIA-----RKR-----GVFVLKG 91

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279
               LP      D       +     P  A+ E  RIL+ GG  +     R +
Sbjct: 92  TAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRES 144

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 81.1 bits (200), Expect = 7e-18
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 6/128 (4%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENML 203
           R  +   D    +    +K  +   +VD  CG G                  +D  E +L
Sbjct: 1   RDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL 60

Query: 204 RQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRI 263
            +  +  +        +   +  D   +     + D     A L    +P   + ++   
Sbjct: 61  AEARELFRLLP----YDSEFLEGDATEIELNDKY-DIAICHAFLLHMTTPETMLQKMIHS 115

Query: 264 LRSGGVFV 271
           ++ GG  +
Sbjct: 116 VKKGGKII 123

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 80.3 bits (198), Expect = 9e-18
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 141 QNFNRSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGSGLFSRKFAKSGTYSGVVALDFS 199
            N  R G PG  E    A  +  +     L+ D+ CG+G  +   A   T   V  LDF 
Sbjct: 21  SNMERQG-PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFL 78

Query: 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAE 259
              +       +Q    L + +  +   +  LPF +  +D + +  A++        + E
Sbjct: 79  SGFIDIFNRNARQSG--LQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFE-RGLNE 135

Query: 260 ISRILRSGGVFVGTTFLRYTSS 281
             + L+ GG    +    +T  
Sbjct: 136 WRKYLKKGGYLAVSECSWFTDE 157

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query: 143 FNRSGFPGPDEEFKMAQEYFKSAQ---GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199
           F +       E F   ++  +       G +++   G+G  + K   +G    V  ++ S
Sbjct: 19  FVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT--VYGIEPS 76

Query: 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAV 257
             M        K+    L    ++   D       +   D + +  A H       + A+
Sbjct: 77  REMRMIA----KEK---LPKEFSITEGDFLSFEVPTSI-DTIVSTYAFHHLTDDEKNVAI 128

Query: 258 AEISRILRSGGVFV 271
           A+ S++L  GG  V
Sbjct: 129 AKYSQLLNKGGKIV 142

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 77.9 bits (192), Expect = 3e-17
 Identities = 18/139 (12%), Positives = 47/139 (33%), Gaps = 14/139 (10%)

Query: 139 WRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 198
                         +   +    + +   G+++DV  G+G ++   A  G    +  L+ 
Sbjct: 16  AEALLGTVISAEDPDRVLIEP--WATGVDGVILDVGSGTGRWTGHLASLGHQ--IEGLEP 71

Query: 199 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPS-PSNA 256
           +  ++       +Q +     ++      +  L  +      + A  +L H  P    +A
Sbjct: 72  ATRLVELA----RQTHP----SVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDA 123

Query: 257 VAEISRILRSGGVFVGTTF 275
           +  +   +  GG  + + F
Sbjct: 124 LVALRMAVEDGGGLLMSFF 142

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 77.5 bits (191), Expect = 5e-17
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           Q   ++D+ CG G   R  A  G     V +D    ++       +          +  +
Sbjct: 52  QPERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAA----RAAGAGEVHLASYAQ 105

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
               ++P    + D + A  AL         ++ +  +L  GG  V
Sbjct: 106 LAEAKVPVGKDY-DLICANFALL-HQDIIELLSAMRTLLVPGGALV 149

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 78.4 bits (193), Expect = 5e-17
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++D+  G+G +S    + G    VV +D S+ ML    +   ++         +V A
Sbjct: 55  PCRVLDLGGGTGKWSLFLQERGFE--VVLVDPSKEMLEVAREKGVKN---------VVEA 103

Query: 227 DVCRLPFASGFVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279
               LPF SG  +AV A G  L    +   A +EI R+L   G+ + T    YT
Sbjct: 104 KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYT 157

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 78.7 bits (194), Expect = 5e-17
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 19/157 (12%)

Query: 134 LYERGWRQNFNRS--GFPGPDEEFKMAQEYFK---SAQGGL-----LVDVSCGSGLFSRK 183
            + R W +N +       G D     A +       A   +     ++DV CG G  + +
Sbjct: 19  PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVR 78

Query: 184 FAKSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241
            A         V  +  S   + Q           L + +    AD   LPF     DAV
Sbjct: 79  LAT---ARDVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDLPFEDASFDAV 133

Query: 242 HA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277
            A  +  H  P    A+ E++R+LR GG      F+ 
Sbjct: 134 WALESLHH-MPDRGRALREMARVLRPGGTVAIADFVL 169

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 77.6 bits (191), Expect = 7e-17
 Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 13/165 (7%)

Query: 119 KPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGS 177
              S   F   F+   ++   RQ       PG  E  + A  +         + D+ CG+
Sbjct: 4   NNTSIHDFDFSFICNYFKLLKRQG------PGSPEATRKAVSFINELTDDAKIADIGCGT 57

Query: 178 GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236
           G  +   A      G +  +D   + +    +   + N      +  +   +  LPF + 
Sbjct: 58  GGQTLFLAD--YVKGQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSMDNLPFQNE 113

Query: 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS 281
            +D + +  A++        + E S+ L+ GG    +    +TS 
Sbjct: 114 ELDLIWSEGAIYN-IGFERGMNEWSKYLKKGGFIAVSEASWFTSE 157

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 10/147 (6%)

Query: 134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGV 193
           + E  W +  +    P   + + +   Y +  +   ++D+ CGSG  S + A  G    V
Sbjct: 1   MPESYWEK-VSGKNIPSSLDLYPIIHNYLQ--EDDEILDIGCGSGKISLELASKG--YSV 55

Query: 194 VALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 251
             +D +   +R      +    N            +   L F     D     A L   P
Sbjct: 56  TGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVP 115

Query: 252 SPSN---AVAEISRILRSGGVFVGTTF 275
            P      + E+ R+L+ G       F
Sbjct: 116 DPKERSRIIKEVFRVLKPGAYLYLVEF 142

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 76.6 bits (188), Expect = 3e-16
 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 10/128 (7%)

Query: 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDF 209
           P + +KM  EY       LLVDV CG G  + + A+       ++  D S  M++     
Sbjct: 22  PSDFYKMIDEYHDGE-RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVI 80

Query: 210 IKQDNTILTSNLALVRADVCRLPFAS------GFVDAVHAGAALHCWPSPSNAVAEISRI 263
            +        N++   +      F          +D + A    H W             
Sbjct: 81  KEGSPDTY-KNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAH-WFDFEKFQRSAYAN 138

Query: 264 LRSGGVFV 271
           LR  G   
Sbjct: 139 LRKDGTIA 146

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 73.7 bits (181), Expect = 7e-16
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 13/110 (11%)

Query: 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
            +G  ++D  CG G      +K G +  V+  D    ++       KQD          V
Sbjct: 45  PRGAKILDAGCGQGRIGGYLSKQG-HD-VLGTDLDPILIDYA----KQDF----PEARWV 94

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILRSGGVFV 271
             D+     +    D + +   +  + +      A+A I R L + G  V
Sbjct: 95  VGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 75.2 bits (185), Expect = 8e-16
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +D+ CG+G  + K A+SG    V+  D +  M+ +     +Q+      +L    AD   
Sbjct: 62  LDLGCGTGQLTEKIAQSGAE--VLGTDNAATMIEKA----RQN----YPHLHFDVADARN 111

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT--GRV 288
                   DAV + A LH    P  A+A I + L+SGG FV     +      L      
Sbjct: 112 FRVDKPL-DAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNA 170

Query: 289 LREV 292
           L  +
Sbjct: 171 LETL 174

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 72.3 bits (177), Expect = 3e-15
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
              G +++++ G+G ++R  +       V ALD S  M+ +              N+   
Sbjct: 45  NIRGDVLELASGTGYWTRHLSGLADR--VTALDGSAEMIAEA-------GRHGLDNVEFR 95

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF 275
           + D+        + DAV     L   P          +   +  GGV      
Sbjct: 96  QQDLFDWTPDRQW-DAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 72.1 bits (177), Expect = 5e-15
 Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 23/152 (15%)

Query: 132 SFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS 191
              ++  +  + + +                       ++D+  G+GL S    +    +
Sbjct: 25  IPCFDDFYGVSVSIASVDTE---------------NPDILDLGAGTGLLSAFLMEKYPEA 69

Query: 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 251
               +D SE ML    +  + +       +  + AD  +  F   + D V +  ++H   
Sbjct: 70  TFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSKYDFEEKY-DMVVSALSIHHLE 123

Query: 252 SP--SNAVAEISRILRSGGVFVGTTFLRYTSS 281
                        IL+  G+F+    +   ++
Sbjct: 124 DEDKKELYKRSYSILKESGIFINADLVHGETA 155

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
            D+ CG G  +         + +  +D  ++ML +              N    +AD+  
Sbjct: 38  YDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA----AD----RLPNTNFGKADLAT 89

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
              A    D ++A A     P     ++++   L SGGV      
Sbjct: 90  WKPAQKA-DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP 133

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 24/162 (14%)

Query: 134 LYERGW-RQNFNRSGF--PGPDEEFKMAQEYFKSAQGGLL------------VDVSCGSG 178
            Y   W  ++ +   +  P   +E + A           L            +D+  G G
Sbjct: 35  FYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG 94

Query: 179 LFSRKFAKSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236
             +R   +     G  +  L+ +    ++  ++  Q    L  N+ +       +P    
Sbjct: 95  GAARFLVR---KFGVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDN 149

Query: 237 FVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277
             D + +  A LH  P       E +R+L+  GV   T  ++
Sbjct: 150 SYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDPMK 190

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 14/123 (11%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++++ CG+G  +     +G +  V A D S  +  +    + +              
Sbjct: 44  GAKILELGCGAGYQAEAMLAAG-FD-VDATDGSPELAAEASRRLGRPV---------RTM 92

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284
              +L     + DAV A A L   P    ++ +  I R L+ GG+F  +           
Sbjct: 93  LFHQLDAIDAY-DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK 151

Query: 285 TGR 287
             R
Sbjct: 152 LAR 154

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 65.8 bits (160), Expect = 7e-13
 Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 19/130 (14%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGSGLFSRKFAKSGTYSGVVALDFSENML 203
                GPD E        +       V +  CG G  + +F          A DFS  +L
Sbjct: 26  ARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAAR--WAAYDFSPELL 83

Query: 204 RQCYDFIKQDNTILTSNLALVRADV-CRLPFA-SGFVDAVHAGAALHCWPSPSNAVAEIS 261
           +               +  +   +    LP         +           P++ +  + 
Sbjct: 84  KLARA--------NAPHADVYEWNGKGELPAGLGAPFGLIV------SRRGPTSVILRLP 129

Query: 262 RILRSGGVFV 271
            +      F+
Sbjct: 130 ELAAPDAHFL 139

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 65.1 bits (158), Expect = 1e-12
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 21/121 (17%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
            + CG+   S +    G +  V ++D+S  ++                 L     DV +L
Sbjct: 48  VLGCGNSALSYELFLGG-FPNVTSVDYSSVVVAAMQACYAHVP-----QLRWETMDVRKL 101

Query: 232 PFASGFVDAVHAGAALHC---------------WPSPSNAVAEISRILRSGGVFVGTTFL 276
            F S   D V     L                   +    ++E+SR+L  GG F+  T  
Sbjct: 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161

Query: 277 R 277
            
Sbjct: 162 A 162

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 6/137 (4%)

Query: 139 WRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 198
           W + F++S +    E              G ++ ++ G G  +   A  G Y  V A+D 
Sbjct: 2   WDERFSQSEYVYGTEPNDFLVSVANQIPQGKILCLAEGEGRNACFLASLG-YE-VTAVDQ 59

Query: 199 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVA 258
           S   L +     ++        +  V++++      +   + + +               
Sbjct: 60  SSVGLAKAKQLAQEKG----VKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYP 115

Query: 259 EISRILRSGGVFVGTTF 275
           ++ + L+ GGVF+   F
Sbjct: 116 KVYQGLKPGGVFILEGF 132

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 15/148 (10%)

Query: 134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG- 192
           +YE  + +N+  SG     E  K      +  +   ++D+  G G       +     G 
Sbjct: 26  VYEFIFGENYISSGGL---EATKKILSDIELNENSKVLDIGSGLGGGCMYINE---KYGA 79

Query: 193 -VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-GAALHC- 249
               +D   N++         +     + +     D+    F     D +++  A L   
Sbjct: 80  HTHGIDICSNIVNMA-----NERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALS 134

Query: 250 WPSPSNAVAEISRILRSGGVFVGTTFLR 277
             + +    +  + L+  G  + T +  
Sbjct: 135 LENKNKLFQKCYKWLKPTGTLLITDYCA 162

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 12/117 (10%)

Query: 167 GGLLVDVSCGSGLFSRKFAK-SGTYSGVVALDFSENML-----RQCYDFIKQDNTILTSN 220
           G  ++D+ CG+G      +K  G +  V+ +D  +N L        Y   K   +   SN
Sbjct: 84  GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSN 143

Query: 221 LALVRADV------CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           +  ++  +               VD V +    +   +      EI R+LR GG   
Sbjct: 144 VRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELY 200

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 12/146 (8%)

Query: 151 PDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208
            D  +     +       G  + D+ CG+G  +   A       V  +D SE ML    +
Sbjct: 16  QDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYE---VTGVDLSEEMLEIAQE 72

Query: 209 FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILR 265
              + N     ++     D+  L              +L+   + ++        +R+L 
Sbjct: 73  KAMETN----RHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLT 128

Query: 266 SGGVFVGTTFLRYTSSTSLTGRVLRE 291
            GG  +      Y   T   G+    
Sbjct: 129 DGGKLLFDVHSPYKMETLFNGKTYAT 154

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 64.3 bits (156), Expect = 6e-12
 Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 7/109 (6%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G ++  V CG          S      +V +D+    L             L   + L R
Sbjct: 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHR 176

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVA---EISRILRSGGVFV 271
            D  +L    G+ D + +       P  +          + L+ GG  V
Sbjct: 177 QDAWKLDTREGY-DLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 13/126 (10%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
            +      E            +D++CG+G  +         +   A+D S+ ML +  + 
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF-KN-TWAVDLSQEMLSEAENK 78

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILR 265
            +           L   D+  L     F D +     + +              +S  L+
Sbjct: 79  FRSQG----LKPRLACQDISNLNINRKF-DLITCCLDSTNYIIDSDDLKKYFKAVSNHLK 133

Query: 266 SGGVFV 271
            GGVF+
Sbjct: 134 EGGVFI 139

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 60.6 bits (147), Expect = 6e-11
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++D++CG+G+ + + A+ G Y  VV LD  E MLR      K+ N     
Sbjct: 35  KEDAKREVRRVLDLACGTGIPTLELAERG-YE-VVGLDLHEEMLRVARRKAKERN----L 88

Query: 220 NLALVRADVCRLPFASGFVDAVHA-GAALHCWPSPSN--AVAEISRILRSGGVFV 271
            +  ++ DV  + F + F DAV    + +  +         ++++  L+ GGVF+
Sbjct: 89  KIEFLQGDVLEIAFKNEF-DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 59.4 bits (144), Expect = 7e-11
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           E  K  + G  +D+ CG+G  S   A +G Y  V A D +   +         +N     
Sbjct: 26  EAVKVVKPGKTLDLGCGNGRNSLYLAANG-YD-VDAWDKNAMSIANVERIKSIEN---LD 80

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL 276
           NL     D+  L F   + D + +   L    +      +A + R  + GG  +    +
Sbjct: 81  NLHTRVVDLNNLTFDRQY-DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 138

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 58.9 bits (142), Expect = 3e-10
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 15/112 (13%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              L+D +CG+G  ++  ++      V+ LD S++ L        ++NT   +N++    
Sbjct: 57  ELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIA----AKENT--AANISYRLL 108

Query: 227 DVCRLPFASGFVDA-----VHAGAALHCWPSP--SNAVAEISRILRSGGVFV 271
           D      A+          ++     H  P          +  +L   G   
Sbjct: 109 DGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMY 160

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 58.2 bits (140), Expect = 4e-10
 Identities = 14/118 (11%), Positives = 34/118 (28%), Gaps = 6/118 (5%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 215
           +  +E          +D   G G  +++      +  V  +D +E+ L Q   ++ ++  
Sbjct: 69  RFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGK 127

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFV 271
                       +          D +     +        +  +      LR  G+ V
Sbjct: 128 ---RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV 182

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 57.7 bits (139), Expect = 5e-10
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 4/120 (3%)

Query: 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--T 215
                KS     ++D+ CG G       K  ++  +  +D S ++L +  D +K D    
Sbjct: 21  VVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPE 80

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 273
           +    ++L ++ +          DA      +              +    R   V V T
Sbjct: 81  MQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 57.6 bits (139), Expect = 8e-10
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 17/126 (13%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             E        +    +   L+DV+CG+G+  R  A S   + V  L+ S +ML      
Sbjct: 34  HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF-GT-VEGLELSADMLAIA--- 88

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILR 265
            ++ N     +  L   D+        F  AV    +++      +    A+   +  + 
Sbjct: 89  -RRRN----PDAVLHHGDMRDFSLGRRF-SAVTCMFSSIGHLAGQAELDAALERFAAHVL 142

Query: 266 SGGVFV 271
             GV V
Sbjct: 143 PDGVVV 148

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             E     +  +S   +   L+DV+CG+G     F K         L+ SE+ML      
Sbjct: 24  AAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF-GD-TAGLELSEDMLTHA--- 78

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILR 265
            ++       +  L + D+        F  AV    +++    +      AVA  +  L 
Sbjct: 79  -RKRL----PDATLHQGDMRDFRLGRKF-SAVVSMFSSVGYLKTTEELGAAVASFAEHLE 132

Query: 266 SGGVFV 271
            GGV V
Sbjct: 133 PGGVVV 138

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 28/158 (17%)

Query: 115 YTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL-VDV 173
           Y+    A+  LF+    +FL    + + F       P +         +     L+  D 
Sbjct: 18  YSGPSSAAQRLFQEDPEAFLL---YHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADF 74

Query: 174 SCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233
            CG    +                        C+D    D  +          D+ ++P 
Sbjct: 75  GCGDCRLASSIRNPVH----------------CFDLASLDPRV-------TVCDMAQVPL 111

Query: 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
               VD      +L    +  + + E +R+L+ GG+  
Sbjct: 112 EDESVDVAVFCLSLM-GTNIRDFLEEANRVLKPGGLLK 148

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 13/126 (10%), Positives = 27/126 (21%), Gaps = 9/126 (7%)

Query: 149 PGPD-EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY 207
              D E  +              +D   G G  ++       Y+    L+  ++ML +  
Sbjct: 75  HDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAK 133

Query: 208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILR 265
             +             + A +          D +                      + L 
Sbjct: 134 RELAGM-----PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALT 188

Query: 266 SGGVFV 271
             G   
Sbjct: 189 PNGYIF 194

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 8/136 (5%)

Query: 158 AQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 215
           A+E+        G +++++ G G  +  F   G +  V AL+ S ++L      + +   
Sbjct: 72  AREFATRTGPVSGPVLELAAGMGRLTFPFLDLG-WE-VTALELSTSVLAAFRKRLAEAPA 129

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVG 272
            +     LV+ D+        F   V   +        +      A +   L  GG F+ 
Sbjct: 130 DVRDRCTLVQGDMSAFALDKRF-GTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL 188

Query: 273 TTFLRYTSSTSLTGRV 288
           +  +   + +    R 
Sbjct: 189 SLAMSEAAESEPLERK 204

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 4/120 (3%)

Query: 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NT 215
                K +    ++D+ CG G   +   K   +  +  +D S   L    + + +     
Sbjct: 21  VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR 80

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 273
                L L++  +          DA      +              +    +   V V T
Sbjct: 81  NQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 54.1 bits (130), Expect = 8e-09
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           ++ C +G F+ K A       +  +D     + +         T   S+++    D+ + 
Sbjct: 57  EIGCAAGAFTEKLAPHCKR--LTVIDVMPRAIGRA-----CQRTKRWSHISWAATDILQF 109

Query: 232 PFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGG-VFVGT 273
             A  F D +     L+     +    A+  + ++L  GG +  G+
Sbjct: 110 STAELF-DLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 21/161 (13%)

Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRK 183
           + +     + +++       +R+      E         +      ++DV+CG+G+ S  
Sbjct: 20  DQYADGEAARVWQLYIGDTRSRT-----AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIM 74

Query: 184 FAKSGTYSGVVALDFSENML---RQCYDFIKQDNTILTSNLALVRADVC--RLPFASGFV 238
             + G +S V ++D S+ ML    +     +++       +           +P   GF 
Sbjct: 75  LVEEG-FS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF- 131

Query: 239 DAV-HAGAALHCWPSPSN-------AVAEISRILRSGGVFV 271
           DAV   G +    P           A+  I+ ++R GG+ V
Sbjct: 132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 16/112 (14%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENML---RQCYDFIKQDNTILTSNLA 222
           +   ++D+ C SG       ++GT   V  ++         ++  D +   +        
Sbjct: 32  EWKEVLDIGCSSGALGAAIKENGTR--VSGIEAFPEAAEQAKEKLDHVVLGDI------- 82

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274
               +   +P+     D V  G  L     P   + ++   ++  GV + + 
Sbjct: 83  ----ETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI 130

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 8/108 (7%)

Query: 172 DVSCGSGLFSRKFAKSGTYSG-VVALDFSEN------MLRQCYDFIKQDNTILTSNLALV 224
           ++ CG G  S   A     SG V  +D +         L Q ++ +          +   
Sbjct: 49  EIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN 108

Query: 225 RADVCRL-PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                 L P A    D V    +L  + S +        +        
Sbjct: 109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVD 156

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 51.5 bits (123), Expect = 8e-08
 Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 9/147 (6%)

Query: 133 FLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG 192
                  ++    S             +  K      ++D+ CG G  S   +  G    
Sbjct: 87  CTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLG--YD 144

Query: 193 VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPS 252
           V + D +EN +    +  +++N     N++    D+        + D + +         
Sbjct: 145 VTSWDHNENSIAFLNETKEKENL----NISTALYDINAANIQENY-DFIVSTVVFMFLNR 199

Query: 253 PSNA--VAEISRILRSGGVFVGTTFLR 277
                 +  +      GG  +    + 
Sbjct: 200 ERVPSIIKNMKEHTNVGGYNLIVAAMS 226

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 50.7 bits (121), Expect = 9e-08
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 13/116 (11%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  +VD +CG+G  +   A     +G V   D  +  +      +   N  L   + L++
Sbjct: 23  GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIK 80

Query: 226 ADVCR-LPFASGFVDAVHAGAALHCWP---------SPSNAVAEISRILRSGGVFV 271
                   +    V AV                   +   A+++   +L +GG+  
Sbjct: 81  DGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 6/114 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +G  ++D+ CG G    K+ ++G       +D +E  +       +              
Sbjct: 64  RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 122

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPS----NAVAEISRILRSGGVFVGTTF 275
           +    +     F D + +  + H   S S     A   I+R LR GG F+ T  
Sbjct: 123 SYGRHMDLGKEF-DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 49.0 bits (116), Expect = 6e-07
 Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN 220
           +   +    ++ +  G+G    K+      + +VA D   + + +  +   + N+ + + 
Sbjct: 43  FLDDSNKRKVLAIDFGNGADLEKYFYGEI-ALLVATDPDADAIARGNERYNKLNSGIKTK 101

Query: 221 LALVRADVC-----------RLPFASGFVDAVHAGAALH-CWPSP--SNAVAEISRILRS 266
                               R  F  G  + +    A+H  +     +  +  +S +  S
Sbjct: 102 YYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS 161

Query: 267 GGVFVGTTF 275
           GG  + TT 
Sbjct: 162 GGKVLITTM 170

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 9/112 (8%), Positives = 28/112 (25%), Gaps = 12/112 (10%)

Query: 172 DVSCGSGLFSRKFAK------SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
            +  G+G    +          G       ++ S   + +  + + + + +     A  +
Sbjct: 58  SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK 117

Query: 226 ADV------CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                              D +H    L+        +     +L +    +
Sbjct: 118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKML 169

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 6/122 (4%)

Query: 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTI 216
           A ++ + +    LVD  CGSG           +   ++ +D S   L +    +      
Sbjct: 713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK 772

Query: 217 LTSNLA---LVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFV 271
              N+    L    +         VD       +             ++  +     + V
Sbjct: 773 EACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832

Query: 272 GT 273
            T
Sbjct: 833 ST 834

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 155 FKMAQEYFKSAQGG---LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF-I 210
             ++++      G    + +D+  G G    K A +   +  + +D  +  L       I
Sbjct: 10  VDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII 69

Query: 211 KQDNTILTSNLALVRADVCRLPFA-SGFVDAVHA----GAALHCWPSPSNAV-AEISRIL 264
           K+ +    SN+  V A    LPF      D++      G  L     P+  + + ++ + 
Sbjct: 70  KKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLA 129

Query: 265 RSGGVFVGTT 274
           +    F   T
Sbjct: 130 KKEAHFEFVT 139

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 30/175 (17%), Positives = 51/175 (29%), Gaps = 23/175 (13%)

Query: 133 FLYERGWRQNFNRS-GFPGPDEEFKMAQ-EYFKSAQGGL-----LVDVSCGSGLFSRKFA 185
                G  ++              + AQ E+     G       LVD  CG G       
Sbjct: 77  DRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAH 136

Query: 186 KSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243
           +     G  V  +  S           ++    +  ++     ++   PF  G V A   
Sbjct: 137 R---RFGSRVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTPFDKGAVTASWN 191

Query: 244 -GAALHC-WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIR 296
             + ++          +E SR L+ GG +V  T           G+  + V  I 
Sbjct: 192 NESTMYVDLHD---LFSEHSRFLKVGGRYVTIT----GCWNPRYGQPSKWVSQIN 239

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 12/167 (7%)

Query: 137 RGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVV-A 195
           R W  N  RS                   +G  ++ +   SG  +   +      G +  
Sbjct: 53  REW--NAYRSKLA---AALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYG 107

Query: 196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN 255
           ++F+  ++R     ++        N+  +  D          V+ V    A    P  + 
Sbjct: 108 VEFAPRVMRDLLTVVRD-----RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAA 162

Query: 256 AVAEISRI-LRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIRIKSHL 301
            V   +R  LR GG  +     R    T+    V +  +   +   L
Sbjct: 163 IVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGL 209

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 26/147 (17%)

Query: 133 FLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG 192
           FL+E  +R +             +    YFK      ++D+ CG G F     + G    
Sbjct: 15  FLFEEKFRGSRELV-----KARLRRYIPYFKG--CRRVLDIGCGRGEFLELCKEEGIE-- 65

Query: 193 VVALDFSENMLRQC---YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-H 248
            + +D +E+M++ C   ++ +K D       L               ++D V     + H
Sbjct: 66  SIGVDINEDMIKFCEGKFNVVKSD---AIEYLK---------SLPDKYLDGVMISHFVEH 113

Query: 249 CW-PSPSNAVAEISRILRSGGVFVGTT 274
                    ++     ++     V  +
Sbjct: 114 LDPERLFELLSLCYSKMKYSSYIVIES 140

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 19/145 (13%), Positives = 44/145 (30%), Gaps = 10/145 (6%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++ +   +G      A       V A++++  ++R+  D   +       
Sbjct: 68  KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----E 122

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA---VAEISRILRSGGVFVGTTFL 276
           N+  +  D  +    +  V+ V           P+ A   +      L+ GG  +     
Sbjct: 123 NIIPILGDANKPQEYANIVEKVD--VIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA 180

Query: 277 RYTSSTSLTGRVLREVMLIRIKSHL 301
           R    T     + +E   I      
Sbjct: 181 RSIDVTKDPKEIFKEQKEILEAGGF 205

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRAD 227
           +++DV  G G    K A+      VVALD  ++ + +               NL  + A 
Sbjct: 30  VVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWAT 89

Query: 228 VCRLPFASGFVDAVHAGAALHCWP--------SPSNAVAEISRILRSGGVFVGTT 274
             RLP  SG V  +H    L  W         S    +  ++ + R G  F+   
Sbjct: 90  AERLPPLSG-VGELHV---LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 17/128 (13%)

Query: 156 KMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 213
            M+ ++         ++VD + G+G  +   A       V A D  E  L +    +   
Sbjct: 10  HMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKK--VYAFDVQEQALGKTSQRLSDL 67

Query: 214 NTILTSNLALVRADVCRLP-------FASGFVDAVHAGAALHCWPSPS---NAVAEISRI 263
                 N  L+      L         A+ F       A       P     A+ +I   
Sbjct: 68  G---IENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDR 124

Query: 264 LRSGGVFV 271
           L  GG   
Sbjct: 125 LEVGGRLA 132

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+  GSG     +A+    +    +D S     Q     ++    ++  +  +  D  
Sbjct: 40  ILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAA 96

Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                    D      A       + A   +++ L+ GG+ +
Sbjct: 97  GYVANEKC-DVAACVGATWIAGGFAGAEELLAQSLKPGGIML 137

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 17/144 (11%), Positives = 40/144 (27%), Gaps = 14/144 (9%)

Query: 135 YERGWRQNFNRSGFPGPD---EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS 191
           Y++  +           D       M + +    + G L+++    G F+ +  +    +
Sbjct: 8   YDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF--N 65

Query: 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 251
            +  ++ SE  +             L   +  + +          + D +     L    
Sbjct: 66  DITCVEASEEAISHA-------QGRLKDGITYIHSRFEDAQLPRRY-DNIVLTHVLEHID 117

Query: 252 SPSNAVAEI-SRILRSGGVFVGTT 274
            P   +  I    L  GG      
Sbjct: 118 DPVALLKRINDDWLAEGGRLFLVC 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.85
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.83
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.83
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.83
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.83
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.82
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.82
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.81
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.81
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.8
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.8
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.8
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.8
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.8
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.8
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.8
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.79
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.78
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.78
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.78
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.78
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.78
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.78
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.77
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.77
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.77
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.77
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.77
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.77
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.76
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.76
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.76
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.76
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.76
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.76
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.75
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.75
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.75
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.74
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.74
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.74
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.74
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.74
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.74
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.73
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.73
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.73
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.73
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.73
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.73
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.73
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.72
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.72
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.72
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.72
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.72
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.72
3ocj_A	305	Putative exported protein; structural genomics, PS	99.72
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.71
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.71
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.7
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.7
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.7
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.69
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.69
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.69
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.69
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.69
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.68
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.68
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.68
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.68
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.68
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.68
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.68
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.67
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.67
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.67
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.67
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.67
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.66
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.66
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.66
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.66
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.66
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.66
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.66
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.66
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.66
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.66
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.66
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.65
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.65
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.65
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.65
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.64
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.64
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.64
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.64
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.63
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.63
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.63
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.63
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.63
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.63
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.63
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.63
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.63
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.62
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.62
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.62
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.62
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.62
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.62
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.62
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.61
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.61
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.61
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.61
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.6
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.6
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.6
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.6
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.6
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.6
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.6
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.6
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.6
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.6
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.6
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.59
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.59
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.59
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.59
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.59
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.58
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.58
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.58
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.58
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.58
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.57
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.57
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.57
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.57
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.57
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.57
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.57
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.57
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.57
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.57
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.56
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.56
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.56
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.55
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.55
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.55
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.55
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.55
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.55
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.55
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.54
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.54
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.54
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.53
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.53
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.53
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.53
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.53
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.53
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.53
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.52
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.52
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.52
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.52
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.52
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.52
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.51
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.51
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.51
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.51
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.5
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.5
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.5
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.5
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.5
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.49
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.49
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.49
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.49
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.48
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.48
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.48
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.48
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.47
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.47
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.47
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.46
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.46
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.46
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.45
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.45
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.45
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.44
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.44
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.44
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.44
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.43
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.42
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.41
2o07_A	304	Spermidine synthase; structural genomics, structur	99.41
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.41
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.41
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.41
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.41
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.4
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.4
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.4
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.39
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.39
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.39
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.37
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.37
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.36
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.36
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.35
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.35
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.35
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.34
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.34
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.34
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.34
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.33
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.32
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.32
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.31
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.3
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.3
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.29
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.29
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.29
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.27
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.26
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.24
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.23
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.22
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.22
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.22
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.21
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.21
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.17
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.16
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.14
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.13
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.12
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.12
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.12
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.08
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.05
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.05
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.01
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.99
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.99
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.98
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.98
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.92
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.92
3lkd_A	542	Type I restriction-modification system methyltrans	98.87
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.85
3khk_A	544	Type I restriction-modification system methylation	98.85
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.84
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.83
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.83
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.82
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.78
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.77
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.71
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.68
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.68
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.63
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.62
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.62
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.5
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.5
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.49
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.49
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	98.45
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	98.43
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	98.42
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	98.41
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.41
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	98.4
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.34
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.34
3ufb_A	530	Type I restriction-modification system methyltran	98.3
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.28
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	98.25
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.22
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.2
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.16
2k5r_A	97	Uncharacterized protein XF2673; solution structure	98.09
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.03
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.98
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.9
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.86
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.47
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.45
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.43
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.31
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.08
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.99
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.73
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	96.63
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.56
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.55
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.47
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.3
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.16
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.88
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.86
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.85
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.83
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.77
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.76
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.75
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.64
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.62
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.62
3q87_A	125	Putative uncharacterized protein ECU08_1170; SAM-m	95.6
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.58
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.51
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.48
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.48
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.47
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.41
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.36
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.23
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.19
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.07
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.06
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.04
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.0
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	94.98
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.96
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.94
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.86
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	94.85
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	94.84
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.8
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.75
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.73
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	94.69
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.64
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.63
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.61
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.51
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.5
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.1
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.99
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.96
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	93.95
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	93.9
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	93.85
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.8
2j6a_A	141	Protein TRM112; translation termination, methyltra	93.78
4eye_A	342	Probable oxidoreductase; structural genomics, niai	93.74
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.63
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.57
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.5
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	93.5
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	93.47
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	93.41
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.3
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	93.28
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.17
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.15
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	93.13
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.09
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	92.97
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	92.96
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	92.54
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	92.39
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.35
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	92.28
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	92.26
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	92.25
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	92.23
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	91.97
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.86
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.7
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	91.53
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	91.46
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	91.45
2akl_A	138	PHNA-like protein PA0128; two domains, Zn binding	91.28
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	91.13
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	91.08
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	90.98
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	90.85
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	90.74
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	90.66
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	90.65
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	90.6
1tfi_A	50	Transcriptional elongation factor SII; transcripti	90.47
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.32
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.29
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	90.23
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.19
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	90.02
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	89.94
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	89.92
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.87
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	89.6
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.54
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.48
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	89.48
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.43
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	89.38
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	89.21
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	89.11
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	89.06
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	89.01
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	88.92
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	88.88
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.83
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	88.67
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.46
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	88.23
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	88.17
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.16
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	88.14
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	88.06
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	87.9
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	87.83
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	87.82
3j21_g	51	50S ribosomal protein L40E; archaea, archaeal, KIN	87.7
4a17_Y	103	RPL37A, 60S ribosomal protein L32; eukaryotic ribo	87.58
2zig_A	297	TTHA0409, putative modification methylase; methylt	87.38
3po3_S	178	Transcription elongation factor S-II; RNA polymera	87.26
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	87.23
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	87.06
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	87.05
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	87.0
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	86.99
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	86.99
1xhl_A	297	Short-chain dehydrogenase/reductase family member	86.95
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	86.94
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	86.88
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	86.87
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	86.84
1ffk_W	73	Ribosomal protein L37AE; ribosome assembly, RNA-RN	86.51
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	86.12
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	85.97
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	85.85
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	85.76
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.46
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	85.3
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	85.24
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	85.12
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	84.97
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	84.81
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	84.76
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	84.61
3me5_A	482	Cytosine-specific methyltransferase; structural ge	84.15
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	84.14
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	83.9
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	83.8
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	83.75
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	83.71
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	83.67
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	83.54
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	83.12
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	83.08
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	82.31
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	82.18
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	82.14
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	82.06
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	81.85
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	81.78
2ct7_A	86	Ring finger protein 31; IBR, structural genomics,	81.67
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	81.53
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	81.1
3ga8_A	78	HTH-type transcriptional regulator MQSA (YGIT/B30;	81.05
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	80.8
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	80.64
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	80.52
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	80.31
3imf_A	257	Short chain dehydrogenase; structural genomics, in	80.15
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	80.12
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	80.04

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.85  E-value=5.8e-21  Score=168.34  Aligned_cols=177  Identities=24%  Similarity=0.430  Sum_probs=124.8

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccCccCcccccccccccccChhhHHHHHHhHH
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWR  140 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w~  140 (314)
                      |.||.|++.+....           ..++|.+|+.....++||++++..........  ....+.+.       .    +
T Consensus         3 ~~Cp~C~~~~~~~~-----------~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~~--~~~~~~~~-------~----~   58 (269)
T 1p91_A            3 FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDP--GDSAEMMQ-------A----R   58 (269)
T ss_dssp             BBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCC--SSSHHHHH-------H----H
T ss_pred             ccCCCCCccceeCC-----------CEEECCCCCcCCcCCCEEEEeecccccCCCCC--CCCHHHHH-------H----H
Confidence            78999999875533           57999999888888999999886533211100  00001110       0    1


Q ss_pred             HhcccCCCCCc--hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 021344          141 QNFNRSGFPGP--DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (314)
Q Consensus       141 ~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~  218 (314)
                      ..+...++..+  ....+.+...+. .++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|+++.        
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--------  129 (269)
T 1p91_A           59 RAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--------  129 (269)
T ss_dssp             HHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--------
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC--------
Confidence            12222222111  112233333332 4678999999999999999999854559999999999999998852        


Q ss_pred             CCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       219 ~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .++.++.+|+..+++++++||+|++.++.       .+++++.++|||||++++.++..
T Consensus       130 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          130 PQVTFCVASSHRLPFSDTSMDAIIRIYAP-------CKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             TTSEEEECCTTSCSBCTTCEEEEEEESCC-------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred             CCcEEEEcchhhCCCCCCceeEEEEeCCh-------hhHHHHHHhcCCCcEEEEEEcCH
Confidence            56899999999999888999999987653       24899999999999999998654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.83  E-value=1.7e-20  Score=164.46  Aligned_cols=128  Identities=25%  Similarity=0.290  Sum_probs=105.9

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      +.+.++.+.+..+.  +.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++         ..++.++++|+++
T Consensus        26 p~~l~~~l~~~~~~--~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~   92 (257)
T 4hg2_A           26 PRALFRWLGEVAPA--RGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALR---------HPRVTYAVAPAED   92 (257)
T ss_dssp             CHHHHHHHHHHSSC--SSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCC---------CTTEEEEECCTTC
T ss_pred             HHHHHHHHHHhcCC--CCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhh---------cCCceeehhhhhh
Confidence            46667777776543  57899999999999999999886  99999999999988764         3689999999999


Q ss_pred             CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHH
Q 021344          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVM  293 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~  293 (314)
                      +|+++++||+|++..++||+ ++.++++++.|+|||||+|++..+.... ..+.....++...
T Consensus        93 ~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~~-~~~~~~~~~~~~~  153 (257)
T 4hg2_A           93 TGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLTR-VDPEVDAVVDRLY  153 (257)
T ss_dssp             CCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCCB-CCHHHHHHHHHHH
T ss_pred             hcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCCC-CCHHHHHHHHHHH
Confidence            99999999999999999776 6889999999999999999998876532 2344444444444

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.83  E-value=3.1e-20  Score=162.87  Aligned_cols=118  Identities=25%  Similarity=0.394  Sum_probs=105.6

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++++...+.   .++.++.+|+..+|++
T Consensus        26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~l~~~  100 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGH---QQVEYVQGDAEQMPFT  100 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCC-CCCSC
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCC---CceEEEEecHHhCCCC
Confidence            44566667777889999999999999999999886  999999999999999999887652   5799999999999998


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +++||+|++..+++|++|+..+|+++.++|||||++++.++..
T Consensus       101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  143 (260)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            8999999999999999999999999999999999999987654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.83  E-value=1.2e-19  Score=162.10  Aligned_cols=122  Identities=15%  Similarity=0.161  Sum_probs=107.9

Q ss_pred             HHHHHHHHh----ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 021344          154 EFKMAQEYF----KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (314)
Q Consensus       154 ~~~~l~~~l----~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  229 (314)
                      ..+.+.+.+    ...++.+|||||||+|.++..+++.. ..+++|+|+|+.+++.++++....+  ...++.++.+|+.
T Consensus        66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~  142 (297)
T 2o57_A           66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFL  142 (297)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTT
T ss_pred             HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEEcCcc
Confidence            445666666    66778899999999999999999873 2399999999999999999988766  3468999999999


Q ss_pred             CCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .+|+++++||+|++..+++|++++..+++++.++|||||++++.++...
T Consensus       143 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  191 (297)
T 2o57_A          143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  191 (297)
T ss_dssp             SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             cCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            9999899999999999999999999999999999999999999987654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.83  E-value=7.9e-20  Score=160.64  Aligned_cols=125  Identities=17%  Similarity=0.266  Sum_probs=103.0

Q ss_pred             CCchHHHHHHHHHhc--cCCCCeEEEEcCcccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEE
Q 021344          149 PGPDEEFKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~--~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~  224 (314)
                      |...+..+.+..++.  .+++.+|||+|||+|.++..+++..  ++.+|+|+|+|+.|++.|+++++..+  ...+++++
T Consensus        51 P~Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~  128 (261)
T 4gek_A           51 PGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVI  128 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEe
Confidence            444444444443332  3568899999999999999999874  35699999999999999999998876  35689999


Q ss_pred             EecCCCCCCCCCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEeccc
Q 021344          225 RADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++|+.++|++  .||+|++..+++|++++.  .+|++++++|||||+|++.+...
T Consensus       129 ~~D~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          129 EGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             ESCTTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             eccccccccc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence            9999998864  599999999999998664  68999999999999999988654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.82  E-value=9.5e-21  Score=177.43  Aligned_cols=116  Identities=14%  Similarity=0.185  Sum_probs=92.9

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.|+++    +. ......+...+...+++
T Consensus        95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~----~~-~~~~~~~~~~~~~~l~~  167 (416)
T 4e2x_A           95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREK----GI-RVRTDFFEKATADDVRR  167 (416)
T ss_dssp             HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTT----TC-CEECSCCSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHc----CC-CcceeeechhhHhhccc
Confidence            445666667777788999999999999999999876  999999999999999874    10 00011122233444566


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++++||+|++.++++|++|+..+++++.++|||||++++.++.
T Consensus       168 ~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          168 TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            6789999999999999999999999999999999999998754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.82  E-value=3.2e-19  Score=157.28  Aligned_cols=122  Identities=25%  Similarity=0.368  Sum_probs=108.4

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...+  ...++.++.+|+.++|+
T Consensus        49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~  125 (273)
T 3bus_A           49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDLPF  125 (273)
T ss_dssp             HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCS
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECccccCCC
Confidence            34566667777788999999999999999999875 4599999999999999999988766  34579999999999999


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++++||+|++..+++|++++..+++++.++|||||++++.++...
T Consensus       126 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  170 (273)
T 3bus_A          126 EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLL  170 (273)
T ss_dssp             CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred             CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeecc
Confidence            889999999999999999999999999999999999999987654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.81  E-value=1.9e-19  Score=157.16  Aligned_cols=125  Identities=14%  Similarity=0.160  Sum_probs=110.2

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      +......+.+.+.+...++.+|||||||+|.++..+++.. ..+++|+|+|+.+++.++++++..+  ...++.++.+|+
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~v~~~~~d~   95 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDA   95 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCC
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECCh
Confidence            4445666777888888888999999999999999999875 3499999999999999999988766  345899999999


Q ss_pred             CCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .++++ +++||+|++..+++|++++..+|+++.++|||||++++.++..
T Consensus        96 ~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~  143 (256)
T 1nkv_A           96 AGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW  143 (256)
T ss_dssp             TTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred             HhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcc
Confidence            99887 7899999999999999999999999999999999999987643

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.81  E-value=6.2e-19  Score=152.78  Aligned_cols=117  Identities=18%  Similarity=0.318  Sum_probs=106.3

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      ..+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++++...+.   .++.++.+|+..+++++
T Consensus        11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A           11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGV---ENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTC---CSEEEEECBTTBCCSCT
T ss_pred             chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCC---CCeEEEecccccCCCCC
Confidence            3556677778899999999999999999999886  999999999999999998887652   57999999999999988


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++||+|++..+++|++++..+++++.++|||||++++.++..
T Consensus        86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            999999999999999999999999999999999999987654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.80  E-value=3.8e-19  Score=151.12  Aligned_cols=120  Identities=27%  Similarity=0.391  Sum_probs=105.8

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ...+.+.+.+...++ +|||+|||+|.++..+++. +..+++|+|+|+.+++.++++++..+  ...++.++.+|+.+++
T Consensus        31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~  106 (219)
T 3dlc_A           31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN--LNDRIQIVQGDVHNIP  106 (219)
T ss_dssp             HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECBTTBCS
T ss_pred             HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc--ccCceEEEEcCHHHCC
Confidence            445566666666555 9999999999999999998 44599999999999999999988876  3468999999999999


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +++++||+|++..+++|++++..+++++.++|||||++++.+..
T Consensus       107 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  150 (219)
T 3dlc_A          107 IEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF  150 (219)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence            88899999999999999999999999999999999999998744

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.80  E-value=3.8e-19  Score=151.70  Aligned_cols=122  Identities=13%  Similarity=0.101  Sum_probs=103.7

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCCCeEEEEecCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRL  231 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~d~~~l  231 (314)
                      ..+.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...+..  ...++.++.+|+...
T Consensus        17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (217)
T 3jwh_A           17 RMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ   96 (217)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence            445666677767788999999999999999999876679999999999999999988765420  012799999999887


Q ss_pred             CCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEec
Q 021344          232 PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +..+++||+|++..+++|++++  ..+++++.++|||||++++...
T Consensus        97 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A           97 DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            7777899999999999999977  7999999999999997777654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.80  E-value=7e-19  Score=154.85  Aligned_cols=125  Identities=20%  Similarity=0.303  Sum_probs=109.3

Q ss_pred             CCchHHHHHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          149 PGPDEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      +........+...+. ..++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.++++++..+  ...+++++.+|
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d  104 (267)
T 3kkz_A           28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG--LQNRVTGIVGS  104 (267)
T ss_dssp             SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECC
T ss_pred             CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC--CCcCcEEEEcC
Confidence            344555566666665 567889999999999999999998 45699999999999999999998876  34679999999


Q ss_pred             CCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +.++++++++||+|++..+++|+ ++..+++++.++|||||++++.++..
T Consensus       105 ~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~  153 (267)
T 3kkz_A          105 MDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSW  153 (267)
T ss_dssp             TTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred             hhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeee
Confidence            99999888999999999999999 89999999999999999999998764

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.80  E-value=8.2e-19  Score=153.22  Aligned_cols=125  Identities=17%  Similarity=0.265  Sum_probs=108.7

Q ss_pred             CCchHHHHHHHHHh-ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          149 PGPDEEFKMAQEYF-KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       149 ~~~~~~~~~l~~~l-~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      +........+.+.+ ...++.+|||||||+|.++..+++.++. +|+|+|+|+.+++.+++++...+  ...+++++.+|
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d  104 (257)
T 3f4k_A           28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKAN--CADRVKGITGS  104 (257)
T ss_dssp             SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECC
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECC
Confidence            44455555666665 4556789999999999999999999753 99999999999999999998876  34569999999


Q ss_pred             CCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +..+|+++++||+|++..+++|+ ++..+++++.++|||||++++.++..
T Consensus       105 ~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~  153 (257)
T 3f4k_A          105 MDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASW  153 (257)
T ss_dssp             TTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             hhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence            99999888999999999999999 89999999999999999999998653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.80  E-value=3.8e-19  Score=151.65  Aligned_cols=119  Identities=17%  Similarity=0.304  Sum_probs=107.0

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      .+.+.+...++.+|||+|||+|.++..+++.+ +..+++|+|+|+.+++.+++++...+.   .++.++.+|+..+++++
T Consensus        28 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL---KNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC---TTEEEEECBTTBCSSCS
T ss_pred             HHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEecccccCCCCC
Confidence            45556667778899999999999999999985 556999999999999999999887763   47999999999998888


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++||+|++..+++|++++..+++++.++|||||++++.++...
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  147 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE  147 (219)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence            9999999999999999999999999999999999999987654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.80  E-value=2.1e-19  Score=152.13  Aligned_cols=115  Identities=15%  Similarity=0.167  Sum_probs=93.5

Q ss_pred             HHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC---------CCCCCeEEEEecCC
Q 021344          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT---------ILTSNLALVRADVC  229 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---------~~~~~v~~~~~d~~  229 (314)
                      .+.+...++.+|||+|||+|..+..+++.+.  +|+|+|+|+.+++.|+++......         ....+++++++|+.
T Consensus        15 ~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~   92 (203)
T 1pjz_A           15 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   92 (203)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHhcccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence            3344555788999999999999999999976  999999999999999987643100         00257999999999


Q ss_pred             CCCCCC-CchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEec
Q 021344          230 RLPFAS-GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       230 ~lp~~~-~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++++.+ ++||+|++..+++|+++.  ..+++++.++|||||++++.+.
T Consensus        93 ~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~  141 (203)
T 1pjz_A           93 ALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL  141 (203)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             cCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            998765 789999999999999754  4689999999999998554443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.80  E-value=5.1e-19  Score=151.02  Aligned_cols=123  Identities=16%  Similarity=0.181  Sum_probs=103.2

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCCCeEEEEecCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRL  231 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~d~~~l  231 (314)
                      ..+.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...+..  ...+++++.+|+...
T Consensus        17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (219)
T 3jwg_A           17 RLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR   96 (219)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred             HHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence            344666666666788999999999999999999886679999999999999999988765420  002899999999888


Q ss_pred             CCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecc
Q 021344          232 PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++.+++||+|++..+++|++++  ..+++++.++|||||+++.....
T Consensus        97 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  143 (219)
T 3jwg_A           97 DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK  143 (219)
T ss_dssp             CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred             ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence            8878899999999999999977  69999999999999976665543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.79  E-value=6.6e-19  Score=155.62  Aligned_cols=119  Identities=19%  Similarity=0.355  Sum_probs=105.9

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      +.+.......++.+|||||||+|.++..+++.++..+++|+|+++.+++.+++++...+.   .++.++.+|+..+++++
T Consensus        27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~  103 (276)
T 3mgg_A           27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI---KNVKFLQANIFSLPFED  103 (276)
T ss_dssp             HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGCCSCT
T ss_pred             HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEcccccCCCCC
Confidence            344444445678899999999999999999997777999999999999999999887763   58999999999999888


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++||+|++..+++|++++..+++++.++|||||++++.++..
T Consensus       104 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          104 SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             CCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            999999999999999999999999999999999999987543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.78  E-value=5e-19  Score=155.07  Aligned_cols=124  Identities=12%  Similarity=0.148  Sum_probs=107.5

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      +......+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....     .+++++.+|+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~  111 (266)
T 3ujc_A           38 SGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-----NKIIFEANDI  111 (266)
T ss_dssp             TTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-----TTEEEEECCT
T ss_pred             cchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEECcc
Confidence            3344556677777777788899999999999999999974 349999999999999999865431     5899999999


Q ss_pred             CCCCCCCCchhhheecchhccC--CCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          229 CRLPFASGFVDAVHAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~--~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .++++++++||+|++..+++|+  .++..+++++.++|||||++++.++...
T Consensus       112 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  163 (266)
T 3ujc_A          112 LTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT  163 (266)
T ss_dssp             TTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             ccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            9999888999999999999999  7889999999999999999999987654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.5e-18  Score=153.83  Aligned_cols=123  Identities=20%  Similarity=0.319  Sum_probs=105.9

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCCeEEEEecC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADV  228 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~~d~  228 (314)
                      +....+.+.++.. .++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++++.. +  ...+++++++|+
T Consensus        22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~v~~~~~d~   98 (299)
T 3g5t_A           22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD--TYKNVSFKISSS   98 (299)
T ss_dssp             CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC---CCTTEEEEECCT
T ss_pred             CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC--CCCceEEEEcCH
Confidence            4556666666654 468899999999999999999754 5679999999999999999998875 2  247999999999


Q ss_pred             CCCCCCC------CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          229 CRLPFAS------GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       229 ~~lp~~~------~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .++++.+      ++||+|++..++||+ ++..+++++.++|||||++++.++..
T Consensus        99 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~  152 (299)
T 3g5t_A           99 DDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYAD  152 (299)
T ss_dssp             TCCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HhCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            9988877      899999999999999 99999999999999999999966553

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.78  E-value=2.8e-18  Score=148.54  Aligned_cols=103  Identities=14%  Similarity=0.162  Sum_probs=93.1

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||||||+|.++..+++.++  +++|+|+|+.+++.|+++..       .++.++.+|+.++ +++++||+|++.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~-------~~v~~~~~d~~~~-~~~~~fD~v~~~  110 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK-------DGITYIHSRFEDA-QLPRRYDNIVLT  110 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGC-CCSSCEEEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhh-------CCeEEEEccHHHc-CcCCcccEEEEh
Confidence            4577999999999999999999887  89999999999999998642       2799999999877 467899999999


Q ss_pred             chhccCCCHHHHHHHHH-hhcccCcEEEEEeccc
Q 021344          245 AALHCWPSPSNAVAEIS-RILRSGGVFVGTTFLR  277 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~-r~LkpGG~l~i~~~~~  277 (314)
                      ++++|++|+..+|+++. ++|||||++++.++..
T Consensus       111 ~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A          111 HVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             SCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             hHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence            99999999999999999 9999999999998654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.78  E-value=1.9e-18  Score=155.62  Aligned_cols=120  Identities=18%  Similarity=0.167  Sum_probs=106.1

Q ss_pred             HHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       156 ~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      +.+.+.+. ..++.+|||||||+|.++..+++.. ..+|+|+|+++.+++.|+++++..+  ...+++++.+|+.++|++
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~  182 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTPFD  182 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCCC
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhcCCCC
Confidence            45666666 6678899999999999999999883 2399999999999999999998876  345899999999999988


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCC
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      +++||+|++..+++|+ ++..+++++.++|||||++++.++....
T Consensus       183 ~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~  226 (312)
T 3vc1_A          183 KGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNP  226 (312)
T ss_dssp             TTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             CCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccc
Confidence            8999999999999999 6999999999999999999999876654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.78  E-value=1e-18  Score=152.45  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=101.5

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      ..+.+.+...++.+|||||||+|.++..+++.+.. +++|+|+|+.+++.++++..      ..++.++.+|+..+++++
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~  106 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIEP  106 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCCT
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCCC
Confidence            34556666667899999999999999999998743 89999999999999998754      268999999999999888


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++||+|++..+++|+.++..+++++.++|||||++++.++.
T Consensus       107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            99999999999999999999999999999999999998644

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.78  E-value=1.9e-18  Score=148.87  Aligned_cols=121  Identities=17%  Similarity=0.298  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ....+.+.+.+. ..++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...     .++.++.+|+.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~  103 (234)
T 3dtn_A           29 DDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSK  103 (234)
T ss_dssp             HHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-----TTEEEEESCTTT
T ss_pred             HHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-----CCEEEEeCchhc
Confidence            344456666665 45678999999999999999999976779999999999999999976543     389999999999


Q ss_pred             CCCCCCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEecccC
Q 021344          231 LPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +++. ++||+|++..+++|++++.  .+++++.++|||||++++.++...
T Consensus       104 ~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  152 (234)
T 3dtn_A          104 YDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG  152 (234)
T ss_dssp             CCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             cCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence            8877 8999999999999998876  599999999999999999987653

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.77  E-value=1.3e-18  Score=148.14  Aligned_cols=114  Identities=15%  Similarity=0.259  Sum_probs=99.6

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      ..+...+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++....     .+++++++|+.+++ ++
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~-~~  112 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRW-----SHISWAATDILQFS-TA  112 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTC-----SSEEEEECCTTTCC-CS
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccC-----CCeEEEEcchhhCC-CC
Confidence            3455566666778999999999999999999875  9999999999999999987642     48999999999888 57


Q ss_pred             CchhhheecchhccCCCH---HHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++||+|++..+++|++++   ..+++++.++|||||++++.++..
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            899999999999999998   467999999999999999987543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.77  E-value=1.7e-18  Score=153.73  Aligned_cols=107  Identities=20%  Similarity=0.288  Sum_probs=97.3

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCCchhhheecc
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGA  245 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~~fD~V~~~~  245 (314)
                      +.+|||||||+|.++..+++.+.  +++|+|+|+.+++.|++++...+  ...++.++.+|+.+++ +.+++||+|++..
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  144 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAKG--VSDNMQFIHCAAQDVASHLETPVDLILFHA  144 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-C--CGGGEEEEESCGGGTGGGCSSCEEEEEEES
T ss_pred             CCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCcceEEEEcCHHHhhhhcCCCceEEEECc
Confidence            67999999999999999999865  99999999999999999988765  2368999999998887 7788999999999


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +++|++++..+++++.++|||||++++.++..
T Consensus       145 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  176 (285)
T 4htf_A          145 VLEWVADPRSVLQTLWSVLRPGGVLSLMFYNA  176 (285)
T ss_dssp             CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred             hhhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence            99999999999999999999999999988643

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.77  E-value=2.3e-18  Score=150.56  Aligned_cols=120  Identities=20%  Similarity=0.225  Sum_probs=95.5

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---------cCC-----CCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---------DNT-----ILTSN  220 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------~~~-----~~~~~  220 (314)
                      .+.+...+...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.+++.|+++...         .+.     ....+
T Consensus        57 ~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (252)
T 2gb4_A           57 KKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS  134 (252)
T ss_dssp             HHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence            34444433334678999999999999999999986  999999999999999876531         000     01268


Q ss_pred             eEEEEecCCCCCCCC-CchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecc
Q 021344          221 LALVRADVCRLPFAS-GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       221 v~~~~~d~~~lp~~~-~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++++++|+.++++.+ ++||+|++..+++|++..  ..+++++.++|||||++++.+..
T Consensus       135 i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~  193 (252)
T 2gb4_A          135 ISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS  193 (252)
T ss_dssp             EEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             eEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence            999999999998764 799999999999999753  57999999999999999765543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.77  E-value=1.7e-18  Score=152.04  Aligned_cols=115  Identities=23%  Similarity=0.266  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.++++         .++.++.+|+.+++
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~---------~~~~~~~~d~~~~~   89 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG--LFVYAVEPSIVMRQQAVVH---------PQVEWFTGYAENLA   89 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT--CEEEEECSCHHHHHSSCCC---------TTEEEECCCTTSCC
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC--CEEEEEeCCHHHHHHHHhc---------cCCEEEECchhhCC
Confidence            455677777777788999999999999999999865  4999999999999887652         38999999999999


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCC
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      +++++||+|++.++++|++++..+++++.++|| ||++++.++....
T Consensus        90 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~  135 (261)
T 3ege_A           90 LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRL  135 (261)
T ss_dssp             SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred             CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCch
Confidence            988999999999999999999999999999999 9999988877543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.77  E-value=4.7e-18  Score=152.33  Aligned_cols=118  Identities=16%  Similarity=0.153  Sum_probs=103.0

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++...+  ...+++++.+|+.++   
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~---  134 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWEEF---  134 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC--CSSCEEEEECCGGGC---
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECCHHHc---
Confidence            34566666777889999999999999999999832 499999999999999999998876  345899999999776   


Q ss_pred             CCchhhheecchhccCCCH---------HHHHHHHHhhcccCcEEEEEecccC
Q 021344          235 SGFVDAVHAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~---------~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +++||+|++..+++|++||         ..+++++.++|||||++++.++...
T Consensus       135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence            6889999999999999877         7999999999999999999987654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.77  E-value=2.2e-18  Score=149.07  Aligned_cols=114  Identities=26%  Similarity=0.426  Sum_probs=100.9

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+.  ++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++..      ..++.++.+|+..+++
T Consensus        43 ~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~  112 (242)
T 3l8d_A           43 IIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERGE------GPDLSFIKGDLSSLPF  112 (242)
T ss_dssp             HHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTTC------BTTEEEEECBTTBCSS
T ss_pred             HHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhcc------cCCceEEEcchhcCCC
Confidence            4455555554  578999999999999999999865  99999999999999988641      3689999999999998


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++++||+|++.++++|++++..+++++.++|||||++++.++..
T Consensus       113 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  156 (242)
T 3l8d_A          113 ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGP  156 (242)
T ss_dssp             CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            88999999999999999999999999999999999999998654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.76  E-value=2.8e-18  Score=149.93  Aligned_cols=113  Identities=18%  Similarity=0.179  Sum_probs=99.9

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      ..+.+.+...++.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++        ..++.++.+|+..++ ++
T Consensus        23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~-~~   93 (259)
T 2p35_A           23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR--------LPNTNFGKADLATWK-PA   93 (259)
T ss_dssp             HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH--------STTSEEEECCTTTCC-CS
T ss_pred             HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CCCcEEEECChhhcC-cc
Confidence            345555666678899999999999999999985556999999999999999986        257899999999988 77


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++||+|++..+++|++++..+++++.++|||||++++.++..
T Consensus        94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           94 QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            899999999999999999999999999999999999998643

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.76  E-value=4.8e-18  Score=151.03  Aligned_cols=115  Identities=15%  Similarity=0.192  Sum_probs=101.5

Q ss_pred             HHHHHh-ccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          157 MAQEYF-KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       157 ~l~~~l-~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+.+.+ ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.+++++...+    .++.++.+|+.++++ 
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~-   86 (284)
T 3gu3_A           12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIEL-   86 (284)
T ss_dssp             HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS----SEEEEEESCTTTCCC-
T ss_pred             HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC----CceEEEEcchhhcCc-
Confidence            444333 456788999999999999999999865 3699999999999999999987754    489999999999887 


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +++||+|++..+++|++++..+++++.++|||||++++.++.
T Consensus        87 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           87 NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            468999999999999999999999999999999999998866

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.76  E-value=3e-18  Score=146.15  Aligned_cols=111  Identities=18%  Similarity=0.252  Sum_probs=97.7

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++..       .++.++.+|+.+++++ +
T Consensus        36 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~-~  105 (220)
T 3hnr_A           36 DILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP-T  105 (220)
T ss_dssp             HHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-S
T ss_pred             HHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-C
Confidence            444455555788999999999999999999865  99999999999999998642       3789999999999887 8


Q ss_pred             chhhheecchhccCCCHHH--HHHHHHhhcccCcEEEEEeccc
Q 021344          237 FVDAVHAGAALHCWPSPSN--AVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~--~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +||+|++..+++|++++..  +++++.++|||||++++.++..
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          106 SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             CeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            9999999999999999987  9999999999999999998554

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.76  E-value=4.8e-18  Score=148.65  Aligned_cols=105  Identities=22%  Similarity=0.343  Sum_probs=95.4

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ...++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.+++++..    ...++.++.+|+..+++++++||+|+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~  109 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKIAG----VDRKVQVVQADARAIPLPDESVHGVI  109 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHTTT----SCTTEEEEESCTTSCCSCTTCEEEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhc----cCCceEEEEcccccCCCCCCCeeEEE
Confidence            345678999999999999999998864  999999999999999998722    23789999999999998889999999


Q ss_pred             ecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      +..+++|++|+..+++++.++|||||++++.
T Consensus       110 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          110 VVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            9999999999999999999999999999987

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.76  E-value=7.2e-18  Score=141.23  Aligned_cols=115  Identities=22%  Similarity=0.239  Sum_probs=100.1

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.+++++...+.   .++.++.+|+..+++ ++
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~-~~   96 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIENL---DNLHTRVVDLNNLTF-DR   96 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC---TTEEEEECCGGGCCC-CC
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhCCC---CCcEEEEcchhhCCC-CC
Confidence            344555656778999999999999999999865  999999999999999998877652   479999999998887 78


Q ss_pred             chhhheecchhccCC--CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +||+|++..+++|++  ++..+++++.++|||||++++.++..
T Consensus        97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (199)
T 2xvm_A           97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD  139 (199)
T ss_dssp             CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeec
Confidence            999999999999998  78899999999999999988766543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.76  E-value=2.1e-18  Score=145.41  Aligned_cols=102  Identities=15%  Similarity=0.223  Sum_probs=94.1

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v  246 (314)
                      +.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++        ..++.++.+|+.++++++++||+|++..+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQT--------HPSVTFHHGTITDLSDSPKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHH--------CTTSEEECCCGGGGGGSCCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHh--------CCCCeEEeCcccccccCCCCeEEEEehhh
Confidence            78999999999999999999865  999999999999999985        25799999999999988899999999999


Q ss_pred             hccCC--CHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          247 LHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       247 l~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++|++  ++..+++++.++|||||++++.++...
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  145 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP  145 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            99997  889999999999999999999987653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.75  E-value=9.7e-18  Score=148.99  Aligned_cols=118  Identities=19%  Similarity=0.194  Sum_probs=101.3

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...+  ...++.++.+|+.++|  
T Consensus        53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~--  127 (287)
T 1kpg_A           53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQFD--  127 (287)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGCC--
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCC--
Confidence            3455566666778899999999999999998543 2399999999999999999988765  3468999999997765  


Q ss_pred             CCchhhheecchhccC--CCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          235 SGFVDAVHAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~--~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                       ++||+|++..+++|+  .++..+++++.++|||||++++.++...
T Consensus       128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence             789999999999999  6789999999999999999999887653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.75  E-value=7.2e-18  Score=142.92  Aligned_cols=100  Identities=28%  Similarity=0.342  Sum_probs=90.7

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++.+|||+|||+|.++..+   + ..+++|+|+|+.+++.++++.        .++.++.+|+.++++++++||+|++..
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~-~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~  103 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---P-YPQKVGVEPSEAMLAVGRRRA--------PEATWVRAWGEALPFPGESFDVVLLFT  103 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---C-CSEEEEECCCHHHHHHHHHHC--------TTSEEECCCTTSCCSCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHhHHhC---C-CCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcccccCCCCCCcEEEEEEcC
Confidence            6789999999999999887   2 228999999999999999853        478999999999998888999999999


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +++|++++..+++++.++|||||++++.++..
T Consensus       104 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A          104 TLEFVEDVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             CTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            99999999999999999999999999998654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.75  E-value=5e-18  Score=146.47  Aligned_cols=107  Identities=17%  Similarity=0.194  Sum_probs=94.1

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v  246 (314)
                      +.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++....+  ...++.++.+|+.+++ ++++||+|++..+
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~  141 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSSP--KAEYFSFVKEDVFTWR-PTELFDLIFDYVF  141 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTSG--GGGGEEEECCCTTTCC-CSSCEEEEEEESS
T ss_pred             CCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhccC--CCcceEEEECchhcCC-CCCCeeEEEEChh
Confidence            45999999999999999988655  89999999999999999887643  2357999999999877 4568999999999


Q ss_pred             hccCC--CHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          247 LHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       247 l~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++|++  ++..+++++.++|||||++++..+...
T Consensus       142 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  175 (235)
T 3lcc_A          142 FCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT  175 (235)
T ss_dssp             TTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCS
T ss_pred             hhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccc
Confidence            99999  888999999999999999999887553

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.74  E-value=5.5e-18  Score=150.95  Aligned_cols=124  Identities=21%  Similarity=0.213  Sum_probs=105.3

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCCCeEEEEecCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVC  229 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~~~v~~~~~d~~  229 (314)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++....+.. ...++.+..+|+.
T Consensus        42 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~  119 (293)
T 3thr_A           42 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL  119 (293)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred             HHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence            345566777777777788999999999999999999976  9999999999999999876443210 1246889999998


Q ss_pred             CCC---CCCCchhhheec-chhccCCC-------HHHHHHHHHhhcccCcEEEEEecc
Q 021344          230 RLP---FASGFVDAVHAG-AALHCWPS-------PSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       230 ~lp---~~~~~fD~V~~~-~vl~h~~d-------~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .++   +.+++||+|++. .+++|+++       +..+++++.++|||||++++..+.
T Consensus       120 ~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          120 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             GHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            877   778899999998 89999999       899999999999999999998854

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.74  E-value=3.4e-18  Score=151.45  Aligned_cols=110  Identities=28%  Similarity=0.436  Sum_probs=97.4

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.++++.        .++.++.+|+..+++ ++
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~  116 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQNY--------PHLHFDVADARNFRV-DK  116 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHC--------TTSCEEECCTTTCCC-SS
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHhhC--------CCCEEEECChhhCCc-CC
Confidence            44556666678899999999999999999854  49999999999999998853        578899999999887 57


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +||+|++..+++|++|+..+++++.++|||||++++.++..
T Consensus       117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          117 PLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            89999999999999999999999999999999999988654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.74  E-value=1.1e-17  Score=143.65  Aligned_cols=111  Identities=21%  Similarity=0.333  Sum_probs=98.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++....+..  ...++.++.+|+..+++++++||+|++
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            578999999999999999999865  9999999999999999987765410  023689999999999988899999999


Q ss_pred             cchhccCCCHH---HHHHHHHhhcccCcEEEEEecccC
Q 021344          244 GAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       244 ~~vl~h~~d~~---~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ..+++|++++.   .+++++.++|||||++++.++...
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN  145 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence            99999999998   899999999999999999987653

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.74  E-value=8.6e-18  Score=145.28  Aligned_cols=113  Identities=27%  Similarity=0.357  Sum_probs=99.9

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+...++.+|||||||+|.++..+++.+. .+++|+|+|+.+++.++++...      .++.++.+|+..++++++
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~~  106 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD------TGITYERADLDKLHLPQD  106 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGGCCCCTT
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhhccCCCC
Confidence            566677766788999999999999999998853 3899999999999999986432      479999999998888888


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +||+|++..+++|++++..+++++.++|||||++++.++.
T Consensus       107 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          107 SFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            9999999999999999999999999999999999998754

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.74  E-value=9.6e-18  Score=141.75  Aligned_cols=109  Identities=21%  Similarity=0.351  Sum_probs=94.6

Q ss_pred             cCCCCeEEEEcCcccHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          164 SAQGGLLVDVSCGSGLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ..++.+|||+|||+|.+ ...++..+.  +++|+|+|+.+++.++++....+    .++.++.+|+.++++++++||+|+
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~   94 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAENFSRENN----FKLNISKGDIRKLPFKDESMSFVY   94 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTC--EEEEEECCHHHHHHHHHHHHHHT----CCCCEEECCTTSCCSCTTCEEEEE
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcC----CceEEEECchhhCCCCCCceeEEE
Confidence            34578999999999997 455555444  99999999999999999887654    578999999999998888999999


Q ss_pred             ecchhccC--CCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          243 AGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       243 ~~~vl~h~--~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +..+++|+  .++..+++++.++|||||++++.++...
T Consensus        95 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  132 (209)
T 2p8j_A           95 SYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTK  132 (209)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             EcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence            99999999  5778999999999999999999987653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.74  E-value=1.4e-17  Score=141.42  Aligned_cols=111  Identities=20%  Similarity=0.224  Sum_probs=96.6

Q ss_pred             HHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      .+.+.+. ..++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++    .   ...++.++.+|+.++ +++
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~----~---~~~~~~~~~~d~~~~-~~~  105 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGR----H---GLDNVEFRQQDLFDW-TPD  105 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGG----G---CCTTEEEEECCTTSC-CCS
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHh----c---CCCCeEEEecccccC-CCC
Confidence            3444443 45677999999999999999999965  99999999999999988    2   236899999999887 678


Q ss_pred             CchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++||+|++..+++|++++  ..+++++.++|||||++++.++..
T Consensus       106 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          106 RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            899999999999999997  789999999999999999998765

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.73  E-value=2.5e-17  Score=145.69  Aligned_cols=140  Identities=11%  Similarity=0.026  Sum_probs=107.2

Q ss_pred             hhhHHHHHHhHHHhcccCC--------CCCchH---HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEe
Q 021344          129 PFVSFLYERGWRQNFNRSG--------FPGPDE---EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALD  197 (314)
Q Consensus       129 ~~~s~~~~~~w~~~~~~~~--------~~~~~~---~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD  197 (314)
                      ......++..|.+.+....        ++..+.   .++.....+...++.+|||||||+|.++..+..+.++.+|+|+|
T Consensus        74 ~~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gID  153 (298)
T 3fpf_A           74 VNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVE  153 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEE
Confidence            3445567788888773322        222222   23333345677889999999999987765444443456999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          198 FSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       198 ~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +++.+++.|+++++..+  . .+++++++|+.+++  +++||+|++...   .+++.++++++.++|||||++++....
T Consensus       154 is~~~l~~Ar~~~~~~g--l-~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          154 IEPDIAELSRKVIEGLG--V-DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             SSHHHHHHHHHHHHHHT--C-CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHhcC--C-CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            99999999999998876  3 79999999998876  689999998654   578999999999999999999998743

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.73  E-value=2.5e-17  Score=148.62  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=101.9

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      .+.+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|+.+++.++++....+  ...++.++.+|+.+++ 
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-  153 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDFA-  153 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGCC-
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChHHCC-
Confidence            345566666677889999999999999999988 54  99999999999999999988765  3457999999998775 


Q ss_pred             CCCchhhheecchhccC--CCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          234 ASGFVDAVHAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~--~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                        ++||+|++..+++|+  .++..+++++.++|||||++++.++...
T Consensus       154 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          154 --EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             --CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             --CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence              689999999999999  5789999999999999999999987654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.73  E-value=4.3e-18  Score=139.36  Aligned_cols=107  Identities=16%  Similarity=0.304  Sum_probs=96.0

Q ss_pred             HHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCch
Q 021344          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~f  238 (314)
                      .+.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++        ..++.++.+|   .++++++|
T Consensus        10 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~v~~~~~d---~~~~~~~~   76 (170)
T 3i9f_A           10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK--------FDSVITLSDP---KEIPDNSV   76 (170)
T ss_dssp             HHHHHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH--------CTTSEEESSG---GGSCTTCE
T ss_pred             HHhcCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh--------CCCcEEEeCC---CCCCCCce
Confidence            3445566788999999999999999999885  999999999999999986        2689999999   67778899


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      |+|++..+++|++++..+++++.++|||||++++.++...
T Consensus        77 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           77 DFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             EEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             EEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            9999999999999999999999999999999999988764

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.73  E-value=6.9e-18  Score=146.96  Aligned_cols=114  Identities=10%  Similarity=0.017  Sum_probs=98.7

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+...++.+|||||||+|.++..+++.+ ..+++|+|+|+.+++.++++....     .++.++.+|+..++++++
T Consensus        84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~~  157 (254)
T 1xtp_A           84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPPN  157 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCSS
T ss_pred             HHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC-----CceEEEEccHHHCCCCCC
Confidence            44445555678899999999999999998886 448999999999999999976532     579999999998888888


Q ss_pred             chhhheecchhccCC--CHHHHHHHHHhhcccCcEEEEEecc
Q 021344          237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +||+|++..+++|++  ++..+++++.++|||||++++.++.
T Consensus       158 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  199 (254)
T 1xtp_A          158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             CeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            999999999999995  4789999999999999999998863

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.73  E-value=4.1e-17  Score=143.85  Aligned_cols=122  Identities=16%  Similarity=0.206  Sum_probs=103.2

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHH------HHHHHHHHHHhcCCCCCCCeEEEEec-
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSEN------MLRQCYDFIKQDNTILTSNLALVRAD-  227 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~------~~~~a~~~~~~~~~~~~~~v~~~~~d-  227 (314)
                      ..+.+.+...++.+|||||||+|.++..+++. ++..+++|+|+|+.      +++.+++++...+  ...+++++.+| 
T Consensus        33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~  110 (275)
T 3bkx_A           33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP--LGDRLTVHFNTN  110 (275)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST--TGGGEEEECSCC
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC--CCCceEEEECCh
Confidence            35556666778899999999999999999988 45569999999997      8999999988765  23589999998 


Q ss_pred             --CCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCC
Q 021344          228 --VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       228 --~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                        ...+|+++++||+|++..+++|++++..+++.+.++++|||++++.++....
T Consensus       111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~  164 (275)
T 3bkx_A          111 LSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQP  164 (275)
T ss_dssp             TTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred             hhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence              4566777889999999999999999999888888888889999999877643

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.73  E-value=1.8e-17  Score=141.72  Aligned_cols=112  Identities=27%  Similarity=0.409  Sum_probs=97.5

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+.  ++.+|||+|||+|.++..+++.++  +++|+|+|+.+++.++++....+    .+++++.+|+.+++++++
T Consensus        31 ~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~  102 (227)
T 1ve3_A           31 LLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDK  102 (227)
T ss_dssp             HHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCSCTT
T ss_pred             HHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC----CCceEEECchhcCCCCCC
Confidence            4444443  378999999999999999999987  99999999999999999887754    689999999998888888


Q ss_pred             chhhheecch--hccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          237 FVDAVHAGAA--LHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       237 ~fD~V~~~~v--l~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +||+|++..+  ++|..++..+++++.++|||||++++.++.
T Consensus       103 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          103 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            9999999999  555567789999999999999999998865

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.73  E-value=1.3e-16  Score=134.70  Aligned_cols=121  Identities=19%  Similarity=0.103  Sum_probs=103.2

Q ss_pred             CchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 021344          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  229 (314)
                      ...+....+...+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.++++++..+.   .+++++.+|+.
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~  100 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA---RNVTLVEAFAP  100 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC---TTEEEEECCTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeCChh
Confidence            344455667777888888999999999999999999998777999999999999999999887762   68999999996


Q ss_pred             CCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +.....++||+|++..+++   ++..+++++.++|||||++++.+..
T Consensus       101 ~~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          101 EGLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             TTCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             hhhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecc
Confidence            6543446899999988765   7889999999999999999998743

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.72  E-value=1.3e-17  Score=144.40  Aligned_cols=108  Identities=12%  Similarity=0.167  Sum_probs=96.0

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++.+|||||||+|.++..+++.+ ..+++|+|+|+.+++.+++++...+   ..++.++.+|+..+++.+++||+|++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC---CceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence            57899999999999999998886 4599999999999999999876642   2578999999988888888999999999


Q ss_pred             hhccCCCHH--HHHHHHHhhcccCcEEEEEeccc
Q 021344          246 ALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       246 vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +++|++++.  .+++++.++|||||++++.++..
T Consensus       155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            999999865  89999999999999999988654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.72  E-value=2.3e-17  Score=139.72  Aligned_cols=116  Identities=21%  Similarity=0.295  Sum_probs=97.8

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+  .++.+|||+|||+|.++..+++.+.. +++|+|+|+.+++.++++...     ..++.++.+|+..+++
T Consensus        32 ~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~~~  103 (215)
T 2pxx_A           32 FRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKLDF  103 (215)
T ss_dssp             HHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSCCS
T ss_pred             HHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcCCC
Confidence            334444443  45789999999999999999998753 899999999999999997653     2579999999999888


Q ss_pred             CCCchhhheecchhccCC---------------CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 ASGFVDAVHAGAALHCWP---------------SPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~---------------d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++++||+|++..+++|+.               ++..+++++.++|||||++++.++..
T Consensus       104 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          104 PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            888999999999887765               56789999999999999999999653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.72  E-value=2.2e-17  Score=152.97  Aligned_cols=115  Identities=21%  Similarity=0.278  Sum_probs=99.9

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCCCeEEEEecCCCC------
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQD-----NTILTSNLALVRADVCRL------  231 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~-----~~~~~~~v~~~~~d~~~l------  231 (314)
                      ..++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++++..     +.....++.++.+|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            4568899999999999999998873 5669999999999999999987643     100226899999999987      


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++++++||+|++..+++|++|+..+++++.++|||||++++.++...
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  207 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYAD  207 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccc
Confidence            88889999999999999999999999999999999999999876553

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.72  E-value=1.6e-17  Score=143.62  Aligned_cols=116  Identities=17%  Similarity=0.202  Sum_probs=99.2

Q ss_pred             HHHHHHHHhccC--CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          154 EFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       154 ~~~~l~~~l~~~--~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ..+.+.+.+...  ++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++....+    .++.++.+|+..+
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~   96 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISNL   96 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGGC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhcC----CCeEEEecccccC
Confidence            344555555443  678999999999999999999875  99999999999999999887754    3799999999888


Q ss_pred             CCCCCchhhheecc-hhccC---CCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          232 PFASGFVDAVHAGA-ALHCW---PSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~-vl~h~---~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +++ ++||+|++.. +++|+   .++..+++++.++|||||++++..+.
T Consensus        97 ~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A           97 NIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             CCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             Ccc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            876 7899999998 99999   46678999999999999999997654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.72  E-value=1.1e-17  Score=144.89  Aligned_cols=111  Identities=14%  Similarity=0.253  Sum_probs=94.3

Q ss_pred             HHHHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-
Q 021344          154 EFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (314)
Q Consensus       154 ~~~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-  231 (314)
                      ..+.+...+. ..++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.+++           ++.++.+|+.+. 
T Consensus        28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~-----------~~~~~~~d~~~~~   94 (240)
T 3dli_A           28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEG-----------KFNVVKSDAIEYL   94 (240)
T ss_dssp             HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHT-----------TSEEECSCHHHHH
T ss_pred             HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHh-----------hcceeeccHHHHh
Confidence            3344444444 24568999999999999999999866  89999999999999986           278888888764 


Q ss_pred             -CCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          232 -PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       232 -p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       ++++++||+|++..+++|++++  ..+++++.++|||||++++.++..
T Consensus        95 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  143 (240)
T 3dli_A           95 KSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP  143 (240)
T ss_dssp             HTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred             hhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence             7788999999999999999966  899999999999999999998764

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.72  E-value=1.2e-17  Score=148.97  Aligned_cols=110  Identities=8%  Similarity=0.035  Sum_probs=85.5

Q ss_pred             CCCCeEEEEcCcccHHHH----HHHHhCCCCeE--EEEeCCHHHHHHHHHHHHhcCCCCCCCeEE--EEecCCCCC----
Q 021344          165 AQGGLLVDVSCGSGLFSR----KFAKSGTYSGV--VALDFSENMLRQCYDFIKQDNTILTSNLAL--VRADVCRLP----  232 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~----~l~~~~~~~~v--~giD~s~~~~~~a~~~~~~~~~~~~~~v~~--~~~d~~~lp----  232 (314)
                      .++.+|||||||+|.++.    .+...++...+  +|+|+|+.|++.|++++....  ...++.+  ..++++.++    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS--NLENVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS--SCTTEEEEEECSCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc--CCCcceEEEEecchhhhhhhhc
Confidence            456799999999997654    34444455544  999999999999999886532  1234544  445544333    


Q ss_pred             --CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                        +++++||+|++.+++||++|+..+|++++++|||||++++....
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  174 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS  174 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence              45789999999999999999999999999999999999998754

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.72  E-value=2.1e-17  Score=148.37  Aligned_cols=112  Identities=16%  Similarity=0.185  Sum_probs=98.7

Q ss_pred             cCCCCeEEEEcCcccHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~-~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ..++.+|||||||+|.++..++ ...+..+|+|+|+|+.+++.+++++...+  ...+++++++|+.+++++ ++||+|+
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~~fD~v~  192 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHRQDAWKLDTR-EGYDLLT  192 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECchhcCCcc-CCeEEEE
Confidence            3568899999999999999985 44556799999999999999999998766  235699999999998887 8999999


Q ss_pred             ecchhccCCCHHH---HHHHHHhhcccCcEEEEEecccC
Q 021344          243 AGAALHCWPSPSN---AVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       243 ~~~vl~h~~d~~~---~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +..+++|++++..   +++++.++|||||++++.++...
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  231 (305)
T 3ocj_A          193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPP  231 (305)
T ss_dssp             CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred             ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence            9999999999986   79999999999999999887653

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.71  E-value=3.9e-17  Score=145.05  Aligned_cols=111  Identities=15%  Similarity=0.169  Sum_probs=96.8

Q ss_pred             HHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchh
Q 021344          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD  239 (314)
                      +.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.+++++...+    .+++++.+|+..+++ +++||
T Consensus       114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~-~~~fD  186 (286)
T 3m70_A          114 DAAKIISPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKEN----LNISTALYDINAANI-QENYD  186 (286)
T ss_dssp             HHHHHSCSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCGGGCCC-CSCEE
T ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHcC----CceEEEEeccccccc-cCCcc
Confidence            344444688999999999999999999875  99999999999999999988765    389999999988776 78899


Q ss_pred             hheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          240 AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       240 ~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +|++..+++|++++  ..+++++.++|||||++++.....
T Consensus       187 ~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  226 (286)
T 3m70_A          187 FIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMS  226 (286)
T ss_dssp             EEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             EEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            99999999999765  489999999999999988766544

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.71  E-value=1.2e-17  Score=140.49  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=91.1

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++ +|||||||+|.++..+++.+.  +++|+|+|+.+++.++++....+    .++.++.+|+..+++++++||+|++..
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~  102 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEKG----VKITTVQSNLADFDIVADAWEGIVSIF  102 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHT----CCEEEECCBTTTBSCCTTTCSEEEEEC
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcC----CceEEEEcChhhcCCCcCCccEEEEEh
Confidence            35 999999999999999998865  99999999999999999887765    489999999999888888999999854


Q ss_pred             hhccC--CCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          246 ALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       246 vl~h~--~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                        .|+  .++..+++++.++|||||++++.++...
T Consensus       103 --~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A          103 --CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             --CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             --hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence              455  3567899999999999999999987653

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.70  E-value=6.1e-17  Score=141.97  Aligned_cols=100  Identities=22%  Similarity=0.289  Sum_probs=89.6

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.|+++.        .++.++.+|+..+++ +++||+|++..
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~fD~v~~~~  118 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRN--------PDAVLHHGDMRDFSL-GRRFSAVTCMF  118 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTCCC-SCCEEEEEECT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCEEEECChHHCCc-cCCcCEEEEcC
Confidence            468999999999999999999876  9999999999999999853        478999999999887 78999999998


Q ss_pred             -hhccCC---CHHHHHHHHHhhcccCcEEEEEecc
Q 021344          246 -ALHCWP---SPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       246 -vl~h~~---d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       +++|++   +...+++++.++|||||++++..+.
T Consensus       119 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  153 (263)
T 3pfg_A          119 SSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWW  153 (263)
T ss_dssp             TGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             chhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence             999997   4558899999999999999997653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.70  E-value=8.2e-17  Score=132.44  Aligned_cols=117  Identities=17%  Similarity=0.191  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l  231 (314)
                      +....+.+.+...++.+|||+|||+|.++..+++..+..+++|+|+++.+++.+++++...+.  ..++ ++.+|..+ +
T Consensus        12 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~-~~~~d~~~~~   88 (178)
T 3hm2_A           12 HVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV--SDRI-AVQQGAPRAF   88 (178)
T ss_dssp             HHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC--TTSE-EEECCTTGGG
T ss_pred             HHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC--CCCE-EEecchHhhh
Confidence            344566667777788899999999999999999986667999999999999999999888762  3478 88888754 3


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +..+++||+|++..+++|    ..+++++.++|||||++++.+..
T Consensus        89 ~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           89 DDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             GGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             hccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeec
Confidence            332278999999999988    67899999999999999998854

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.70  E-value=3.8e-17  Score=138.54  Aligned_cols=101  Identities=24%  Similarity=0.284  Sum_probs=90.7

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++.         ++.++.+|+..++ .+++||+|++..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~~-~~~~fD~v~~~~  110 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL---------GRPVRTMLFHQLD-AIDAYDAVWAHA  110 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---------TSCCEECCGGGCC-CCSCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc---------CCceEEeeeccCC-CCCcEEEEEecC
Confidence            578999999999999999999865  9999999999999999864         4567889998888 678999999999


Q ss_pred             hhccCC--CHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       246 vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +++|++  ++..+++++.++|||||++++......
T Consensus       111 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  145 (211)
T 3e23_A          111 CLLHVPRDELADVLKLIWRALKPGGLFYASYKSGE  145 (211)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred             chhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence            999998  778999999999999999999876543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.69  E-value=1.1e-16  Score=133.42  Aligned_cols=122  Identities=17%  Similarity=0.105  Sum_probs=99.3

Q ss_pred             HHHHHHHHHhcc---CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 021344          153 EEFKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (314)
Q Consensus       153 ~~~~~l~~~l~~---~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  229 (314)
                      ...+.+.+.+..   .++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|+++++..+.   .+++++++|+.
T Consensus        28 ~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~  103 (189)
T 3p9n_A           28 RVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEALGL---SGATLRRGAVA  103 (189)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHHTC---SCEEEEESCHH
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCC---CceEEEEccHH
Confidence            334444444432   467899999999999999888765 45899999999999999999988762   68999999987


Q ss_pred             CCC--CCCCchhhheecchhccC-CCHHHHHHHHHh--hcccCcEEEEEecccC
Q 021344          230 RLP--FASGFVDAVHAGAALHCW-PSPSNAVAEISR--ILRSGGVFVGTTFLRY  278 (314)
Q Consensus       230 ~lp--~~~~~fD~V~~~~vl~h~-~d~~~~l~~i~r--~LkpGG~l~i~~~~~~  278 (314)
                      +++  +++++||+|++...+++. .+...+++++.+  +|||||++++......
T Consensus       104 ~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          104 AVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             HHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             HHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            753  346789999999887775 677889999999  9999999999886654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.69  E-value=1.9e-16  Score=155.29  Aligned_cols=124  Identities=12%  Similarity=0.149  Sum_probs=104.8

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCC---CCCCCeEEEEecC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNT---ILTSNLALVRADV  228 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~---~~~~~v~~~~~d~  228 (314)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.|++++.....   ....+++++++|+
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            445667777776788999999999999999999987 345999999999999999997764210   0125899999999


Q ss_pred             CCCCCCCCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEeccc
Q 021344          229 CRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .++++.+++||+|++..+++|++++.  .+++++.++|||| .+++.++..
T Consensus       788 ~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          788 LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            99999889999999999999999876  5899999999999 888887553

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.69  E-value=3.6e-17  Score=146.04  Aligned_cols=109  Identities=19%  Similarity=0.218  Sum_probs=90.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----------------------------
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-----------------------------  216 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-----------------------------  216 (314)
                      ++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|++++...+..                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            578999999999999999999966679999999999999999876543210                             


Q ss_pred             --------------------------CCCCeEEEEecCCCCC-----CCCCchhhheecchhccCC------CHHHHHHH
Q 021344          217 --------------------------LTSNLALVRADVCRLP-----FASGFVDAVHAGAALHCWP------SPSNAVAE  259 (314)
Q Consensus       217 --------------------------~~~~v~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~------d~~~~l~~  259 (314)
                                                ...++.++++|+...+     +.+++||+|++..+++|+.      ++..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                      0148999999997654     5678999999999998875      67789999


Q ss_pred             HHhhcccCcEEEEEe
Q 021344          260 ISRILRSGGVFVGTT  274 (314)
Q Consensus       260 i~r~LkpGG~l~i~~  274 (314)
                      +.++|||||+|++..
T Consensus       206 ~~~~LkpGG~lil~~  220 (292)
T 3g07_A          206 IYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHEEEEEEEEEEC
T ss_pred             HHHHhCCCcEEEEec
Confidence            999999999999975

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.69  E-value=6.7e-16  Score=130.57  Aligned_cols=116  Identities=16%  Similarity=0.176  Sum_probs=96.3

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .+....+...+...++.+|||+|||+|.++..+++.+  .+|+|+|+++.+++.|+++++..+.  ..+++++.+|+.+.
T Consensus        41 ~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~  116 (204)
T 3njr_A           41 SPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG--GRAITIEPRADRIENIQKNIDTYGL--SPRMRAVQGTAPAA  116 (204)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCTTGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCC--CCCEEEEeCchhhh
Confidence            3444566777777788999999999999999999984  4999999999999999999888763  23899999999873


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ....++||+|++..++    ++. +++++.++|||||++++....
T Consensus       117 ~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          117 LADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             GTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred             cccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecC
Confidence            3234579999987654    566 999999999999999998843

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.69  E-value=1.2e-16  Score=140.04  Aligned_cols=109  Identities=28%  Similarity=0.373  Sum_probs=92.9

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      +.+.+.+.  ++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++..        . .++.+|+..+++++
T Consensus        46 ~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~--------~-~~~~~d~~~~~~~~  112 (260)
T 2avn_A           46 SFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV--------K-NVVEAKAEDLPFPS  112 (260)
T ss_dssp             HHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC--------S-CEEECCTTSCCSCT
T ss_pred             HHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC--------C-CEEECcHHHCCCCC
Confidence            34444444  678999999999999999998865  99999999999999998642        1 28899999999888


Q ss_pred             CchhhheecchhccC-CCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCW-PSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~-~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++||+|++..+++|+ +++..+++++.++|||||++++.+++.
T Consensus       113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            999999998876665 789999999999999999999988654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.68  E-value=1.4e-16  Score=141.92  Aligned_cols=109  Identities=20%  Similarity=0.245  Sum_probs=95.3

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-CCCchhhhee
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA  243 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-~~~~fD~V~~  243 (314)
                      .++.+|||||||+|.++..+++.+ ..+++|+|+|+.+++.|++++...+  ...++.++.+|+..+++ .+++||+|++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CCccEEEEECCccccccCCCCCcCEEEE
Confidence            467899999999999999888875 4599999999999999999988765  23579999999998887 5789999999


Q ss_pred             cchhcc----CCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          244 GAALHC----WPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       244 ~~vl~h----~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ..+++|    ..++..+++++.++|||||++++.++.
T Consensus       140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            999977    456789999999999999999998855

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.68  E-value=9.3e-16  Score=141.31  Aligned_cols=120  Identities=11%  Similarity=0.118  Sum_probs=103.7

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      ..+.+.++..+..+|||||||+|.++..+++.++..+++++|+ +.+++.|++++...+  ...+++++.+|+. .+++.
T Consensus       192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--l~~~v~~~~~d~~-~~~p~  267 (369)
T 3gwz_A          192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG--LADRCEILPGDFF-ETIPD  267 (369)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTT-TCCCS
T ss_pred             HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC--cCCceEEeccCCC-CCCCC
Confidence            3444555566778999999999999999999988889999999 999999999988765  3478999999998 45555


Q ss_pred             CchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEecccCCC
Q 021344          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTS  280 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~~~  280 (314)
                       +||+|++.+++||++++.  ++|++++++|||||++++.+......
T Consensus       268 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~  313 (369)
T 3gwz_A          268 -GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDER  313 (369)
T ss_dssp             -SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSS
T ss_pred             -CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence             799999999999999886  79999999999999999988776543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.68  E-value=3.9e-16  Score=138.04  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=95.9

Q ss_pred             HHHHHhc-cCCCCeEEEEcCcc---cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          157 MAQEYFK-SAQGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       157 ~l~~~l~-~~~~~~iLDiGcG~---G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .+.+.+. .....+|||||||+   |.++..+.+..+..+|+++|+|+.+++.|++++..     ..+++++.+|+.+.+
T Consensus        67 ~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~  141 (274)
T 2qe6_A           67 RGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPE  141 (274)
T ss_dssp             HHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHH
T ss_pred             HHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCch
Confidence            3334444 33447999999999   99888887777777999999999999999998753     268999999997632


Q ss_pred             -----------CCCCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 -----------FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 -----------~~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                                 +..++||+|++..+|||+++  +..+|+++.++|||||+|++.+...
T Consensus       142 ~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          142 YILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             HHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             hhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence                       22247999999999999998  8899999999999999999998765

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.68  E-value=8.2e-17  Score=144.34  Aligned_cols=111  Identities=15%  Similarity=0.160  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC---CCCeEEEEecCC------CC--CCC
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL---TSNLALVRADVC------RL--PFA  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~---~~~v~~~~~d~~------~l--p~~  234 (314)
                      ++.+|||||||+|..+..++..+ ..+|+|+|+|+.+++.|+++....+...   ..++++.+.|+.      .+  +++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            47899999999998666555544 3489999999999999999887654100   013678888872      22  345


Q ss_pred             CCchhhheecchhccC---CCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          235 SGFVDAVHAGAALHCW---PSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~---~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +++||+|+|..++||+   .+...++++++++|||||++++.++..
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            6899999999999886   355799999999999999999998754

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.68  E-value=1.1e-16  Score=143.11  Aligned_cols=123  Identities=16%  Similarity=0.223  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ......+.+.+... +.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|++++...+.....+++++++|+.++
T Consensus        69 ~~~~~~~~~~~~~~-~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~  145 (299)
T 3g2m_A           69 TSEAREFATRTGPV-SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF  145 (299)
T ss_dssp             HHHHHHHHHHHCCC-CSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred             cHHHHHHHHhhCCC-CCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence            34455566666553 44999999999999999999865  8999999999999999988764310015799999999998


Q ss_pred             CCCCCchhhheec-chhccCCC--HHHHHHHHHhhcccCcEEEEEecccC
Q 021344          232 PFASGFVDAVHAG-AALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       232 p~~~~~fD~V~~~-~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++ +++||+|++. .+++|+++  ...+|+++.++|||||+|++.++...
T Consensus       146 ~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          146 AL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             CC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             Cc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence            87 6889988864 66777653  47899999999999999999987763

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.68  E-value=1.4e-16  Score=136.23  Aligned_cols=107  Identities=17%  Similarity=0.259  Sum_probs=92.9

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC--CCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFA  234 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~--lp~~  234 (314)
                      .+.+.+. .++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.++++          ...++.+|+..  .+++
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~   90 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEK----------LDHVVLGDIETMDMPYE   90 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTT----------SSEEEESCTTTCCCCSC
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHh----------CCcEEEcchhhcCCCCC
Confidence            3444454 567899999999999999999885  5999999999999999862          24788999876  6677


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +++||+|++..+++|++++..+++++.++|||||++++.++.
T Consensus        91 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           91 EEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             CCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            789999999999999999999999999999999999998865

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.68  E-value=2.9e-17  Score=142.13  Aligned_cols=105  Identities=12%  Similarity=0.221  Sum_probs=90.5

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhhe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~  242 (314)
                      .++++|||||||+|..+..+++..+ .+++|||+|+.+++.|+++....+    .++.++.+|+..+  ++++++||.|+
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCC----CceEEEeehHHhhcccccccCCceEE
Confidence            4688999999999999999988764 489999999999999999888765    6889999987643  46678898886


Q ss_pred             e-----cchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          243 A-----GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       243 ~-----~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .     ..+++|+.++..+++++.|+|||||+|++..
T Consensus       134 ~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            4     6778899999999999999999999998765

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.67  E-value=4.5e-17  Score=140.70  Aligned_cols=107  Identities=13%  Similarity=0.229  Sum_probs=88.9

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhhe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~  242 (314)
                      .++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|+++.+..+    .++.++.+|+.++  ++++++||+|+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~fD~V~  133 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcC----CCeEEEecCHHHhhcccCCCceEEEE
Confidence            4678999999999999999977653 389999999999999999877654    6899999999887  88889999999


Q ss_pred             e-cchh--c--cCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          243 A-GAAL--H--CWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       243 ~-~~vl--~--h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      + .+.+  +  |..+...+++++.++|||||++++.++.
T Consensus       134 ~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             ECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            9 4443  1  2223457899999999999999987654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.67  E-value=4.4e-16  Score=131.81  Aligned_cols=114  Identities=18%  Similarity=0.115  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ......+.+.+...++.+|||+|||+|.++..+++.+.  +|+++|+++.+++.++++++..+.   .+++++.+|+.+.
T Consensus        63 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~  137 (210)
T 3lbf_A           63 PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ--HVCSVERIKGLQWQARRRLKNLDL---HNVSTRHGDGWQG  137 (210)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHcCC---CceEEEECCcccC
Confidence            34455677777778899999999999999999999854  999999999999999999988653   5799999999876


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +..+++||+|++..+++|+++      ++.++|||||++++....
T Consensus       138 ~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          138 WQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             CccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence            666789999999999999976      578999999999998854

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.67  E-value=5.2e-16  Score=128.95  Aligned_cols=119  Identities=14%  Similarity=0.218  Sum_probs=100.9

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCC--eEEEEecCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVCR  230 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~--v~~~~~d~~~  230 (314)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.+++++...+.   .+  +.++.+|+.+
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~  113 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNNL---DNYDIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTC---TTSCEEEEECSTTT
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECchhc
Confidence            455677777777788899999999999999999884  4999999999999999999887652   34  9999999977


Q ss_pred             CCCCCCchhhheecchhcc-CCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 LPFASGFVDAVHAGAALHC-WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h-~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       ++.+++||+|++..+++| ..+...+++++.++|||||++++.++..
T Consensus       114 -~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          114 -NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             -TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             -ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence             344678999999988877 3456789999999999999999998654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.67  E-value=2.8e-16  Score=135.69  Aligned_cols=113  Identities=21%  Similarity=0.294  Sum_probs=95.2

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+..  +.+|||+|||+|.++..+++. .  +++|+|+|+.+++.|+++....+    .++.++.+|+.++++
T Consensus        23 ~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~-~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~   93 (243)
T 3d2l_A           23 WVAWVLEQVEP--GKRIADIGCGTGTATLLLADH-Y--EVTGVDLSEEMLEIAQEKAMETN----RHVDFWVQDMRELEL   93 (243)
T ss_dssp             HHHHHHHHSCT--TCEEEEESCTTCHHHHHHTTT-S--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCGGGCCC
T ss_pred             HHHHHHHHcCC--CCeEEEecCCCCHHHHHHhhC-C--eEEEEECCHHHHHHHHHhhhhcC----CceEEEEcChhhcCC
Confidence            33455555543  689999999999999999887 3  99999999999999999887654    679999999988876


Q ss_pred             CCCchhhheecc-hhccCC---CHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 ASGFVDAVHAGA-ALHCWP---SPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~-vl~h~~---d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      + ++||+|++.. +++|+.   ++..+++++.++|||||++++..+.
T Consensus        94 ~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A           94 P-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             S-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             C-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            5 7899999986 999994   4568899999999999999986643

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.67  E-value=1e-16  Score=139.00  Aligned_cols=105  Identities=16%  Similarity=0.109  Sum_probs=92.3

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC-----Cchh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-----GFVD  239 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~-----~~fD  239 (314)
                      .++.+|||+|||+|.++..+++.++  +|+|+|+|+.+++.++++..      ..+++++++|+.+++...     ..||
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~d  126 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGDA  126 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCcc
Confidence            4678999999999999999999987  99999999999999998762      258999999998865432     2489


Q ss_pred             hheecchhccCC--CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          240 AVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       240 ~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +|++..+++|++  ++..+++++.++|||||++++.++..
T Consensus       127 ~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             EEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            999999999999  78899999999999999999988754

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.66  E-value=7.6e-17  Score=141.71  Aligned_cols=113  Identities=20%  Similarity=0.339  Sum_probs=87.5

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-------------------------
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-------------------------  217 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-------------------------  217 (314)
                      ...++.+|||||||+|.+...++..+. .+|+|+|+|+.+++.|+++++......                         
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  130 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence            344678999999999988777766653 379999999999999998775532000                         


Q ss_pred             -CCCeE-EEEecCCCC-CC---CCCchhhheecchhccC-C---CHHHHHHHHHhhcccCcEEEEEecc
Q 021344          218 -TSNLA-LVRADVCRL-PF---ASGFVDAVHAGAALHCW-P---SPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       218 -~~~v~-~~~~d~~~l-p~---~~~~fD~V~~~~vl~h~-~---d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       ..++. ++++|+.+. |+   ..++||+|+++.+|||+ +   +...++++++++|||||+|++.+..
T Consensus       131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence             01243 889999873 43   25689999999999996 3   4468999999999999999998754

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.66  E-value=8.6e-16  Score=130.64  Aligned_cols=106  Identities=21%  Similarity=0.261  Sum_probs=91.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhhee
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~~  243 (314)
                      ++.+|||||||+|.++..+++..++.+++|+|+++.+++.|++++...+.   .++.++.+|+..++  +++++||+|++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV---PNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---SSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC---CCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            57799999999999999999998777999999999999999999888763   68999999998877  67789999998


Q ss_pred             cchhccCC--------CHHHHHHHHHhhcccCcEEEEEe
Q 021344          244 GAALHCWP--------SPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       244 ~~vl~h~~--------d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .....+..        ....+++++.++|||||++++.+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            86543222        12579999999999999999987

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.66  E-value=4.4e-16  Score=141.38  Aligned_cols=112  Identities=19%  Similarity=0.165  Sum_probs=97.6

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      +..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...+  ...+++++.+|+. .+++. +||+|+
T Consensus       166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~-~~~p~-~~D~v~  240 (332)
T 3i53_A          166 DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG--LSGRAQVVVGSFF-DPLPA-GAGGYV  240 (332)
T ss_dssp             CCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTT-SCCCC-SCSEEE
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC--cCcCeEEecCCCC-CCCCC-CCcEEE
Confidence            334567999999999999999999988889999999 999999999988765  3478999999997 45554 799999


Q ss_pred             ecchhccCCCH--HHHHHHHHhhcccCcEEEEEecccCC
Q 021344          243 AGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       243 ~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      +.+++||++++  .++|++++++|||||++++.+.....
T Consensus       241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred             EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence            99999999987  78999999999999999998876543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.66  E-value=7.5e-16  Score=133.98  Aligned_cols=108  Identities=25%  Similarity=0.398  Sum_probs=90.7

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhh
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V  241 (314)
                      ....++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++....+    .++.++++|+.+++++ ++||+|
T Consensus        37 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~~fD~v  109 (252)
T 1wzn_A           37 DAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAFK-NEFDAV  109 (252)
T ss_dssp             TCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCCC-SCEEEE
T ss_pred             hcccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhcC----CceEEEECChhhcccC-CCccEE
Confidence            3345678999999999999999999865  99999999999999999987765    4799999999888764 689999


Q ss_pred             eecc-hhccCC--CHHHHHHHHHhhcccCcEEEEEecc
Q 021344          242 HAGA-ALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       242 ~~~~-vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++.. +++|+.  +...+++++.++|||||++++..+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            9864 455554  4568999999999999999987643

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.66  E-value=3.5e-16  Score=134.80  Aligned_cols=103  Identities=24%  Similarity=0.352  Sum_probs=90.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee-
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-  243 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~-  243 (314)
                      .++.+|||+|||+|.++..+++.++  +++|+|+|+.+++.++++.        .++.++.+|+..+++ +++||+|++ 
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~~D~v~~~  107 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL--------PDATLHQGDMRDFRL-GRKFSAVVSM  107 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC--------TTCEEEECCTTTCCC-SSCEEEEEEC
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC--------CCCEEEECCHHHccc-CCCCcEEEEc
Confidence            4578999999999999999999986  9999999999999999853        568999999998887 678999995 


Q ss_pred             cchhccCCCH---HHHHHHHHhhcccCcEEEEEecccC
Q 021344          244 GAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       244 ~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ..+++|+.++   ..+++++.++|||||++++.++...
T Consensus       108 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (239)
T 3bxo_A          108 FSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP  145 (239)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred             CchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence            5599999654   6899999999999999999876543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.66  E-value=3.3e-16  Score=133.63  Aligned_cols=95  Identities=21%  Similarity=0.313  Sum_probs=87.3

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v  246 (314)
                      +.+|||+|||+|.++..++..      +|+|+|+.+++.+++          .++.++.+|+..+++++++||+|++..+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~----------~~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARK----------RGVFVLKGTAENLPLKDESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHH----------TTCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHh----------cCCEEEEcccccCCCCCCCeeEEEEcch
Confidence            779999999999999888753      999999999999988          3688999999998888889999999999


Q ss_pred             hccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       247 l~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++|++++..+++++.++|||||++++.++..
T Consensus       112 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  142 (219)
T 1vlm_A          112 ICFVDDPERALKEAYRILKKGGYLIVGIVDR  142 (219)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             HhhccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence            9999999999999999999999999988654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.66  E-value=1.5e-15  Score=139.36  Aligned_cols=120  Identities=15%  Similarity=0.129  Sum_probs=103.4

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+.+.+.++..++.+|||||||+|.++..+++..+..+++++|+ +.+++.++++++..+  ...+++++.+|+.+.+++
T Consensus       179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~  255 (359)
T 1x19_A          179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESYP  255 (359)
T ss_dssp             HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CTTTEEEEECCTTTSCCC
T ss_pred             HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC--CCCCEEEEeCccccCCCC
Confidence            34555666666788999999999999999999988889999999 999999999988765  235699999999887765


Q ss_pred             CCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEecccCC
Q 021344          235 SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      +.  |+|++..++||+++  ...+|+++.++|||||++++.++....
T Consensus       256 ~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  300 (359)
T 1x19_A          256 EA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD  300 (359)
T ss_dssp             CC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCC
T ss_pred             CC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCC
Confidence            43  99999999999988  678999999999999999998876543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.66  E-value=9.5e-16  Score=140.96  Aligned_cols=110  Identities=14%  Similarity=0.145  Sum_probs=96.8

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhhe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~  242 (314)
                      ....+|||||||+|.++..+++.++..+++++|+ +.+++.|++++...+  ...+++++.+|+.+.  |++ ++||+|+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~p-~~~D~v~  253 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS--GSERIHGHGANLLDRDVPFP-TGFDAVW  253 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT--TGGGEEEEECCCCSSSCCCC-CCCSEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC--cccceEEEEccccccCCCCC-CCcCEEE
Confidence            4568999999999999999999988889999999 999999999987765  236899999999875  465 6899999


Q ss_pred             ecchhccCCCHH--HHHHHHHhhcccCcEEEEEecccC
Q 021344          243 AGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       243 ~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +.+++||++++.  .+|++++++|||||++++.+....
T Consensus       254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  291 (363)
T 3dp7_A          254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD  291 (363)
T ss_dssp             EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred             EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence            999999998874  789999999999999999886554

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.66  E-value=1.3e-15  Score=138.20  Aligned_cols=120  Identities=14%  Similarity=0.249  Sum_probs=101.9

Q ss_pred             HHHHHHHhcc--CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          155 FKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       155 ~~~l~~~l~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ...+.+.++.  .++.+|||+|||+|.++..+++..+..+++++|++ .+++.+++++...+  ...+++++.+|+.+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~  228 (335)
T 2r3s_A          152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG--VASRYHTIAGSAFEVD  228 (335)
T ss_dssp             HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT--CGGGEEEEESCTTTSC
T ss_pred             HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC--CCcceEEEecccccCC
Confidence            3344555555  67789999999999999999999777799999999 99999999887765  2357999999998877


Q ss_pred             CCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecccC
Q 021344          233 FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++++ ||+|++.+++||++++  ..+++++.++|||||++++.++...
T Consensus       229 ~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          229 YGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             CCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             CCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            6554 9999999999999766  6899999999999999999887654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.66  E-value=3.9e-16  Score=129.45  Aligned_cols=109  Identities=18%  Similarity=0.165  Sum_probs=85.9

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCCchhhhee
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA  243 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~~fD~V~~  243 (314)
                      .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.|+++++..+.   .++++++.+...++ +.+++||+|++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~--~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~~~~~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLS--KKVYAFDVQEQALGKTSQRLSDLGI---ENTELILDGHENLDHYVREPIRAAIF   95 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHHTC---CCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCcHHHHHhhccCCcCEEEE
Confidence            467899999999999999999884  4999999999999999999988762   68999998877643 44678999987


Q ss_pred             cc-hhcc--------CCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          244 GA-ALHC--------WPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       244 ~~-vl~h--------~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .. .+++        ..+...+++++.++|||||++++..+...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  139 (185)
T 3mti_A           96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGH  139 (185)
T ss_dssp             EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC---
T ss_pred             eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence            63 2322        12335788999999999999999887643

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.66  E-value=2e-16  Score=134.89  Aligned_cols=110  Identities=19%  Similarity=0.215  Sum_probs=92.9

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---C
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---P  232 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l---p  232 (314)
                      ..+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++         .++.+..+|+..+   +
T Consensus        42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~  110 (227)
T 3e8s_A           42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAK  110 (227)
T ss_dssp             HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTC
T ss_pred             HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHh---------cccccchhhHHhhcccc
Confidence            3455555556678999999999999999999865  999999999999999984         4567888887665   4


Q ss_pred             CCC-CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 FAS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 ~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +.. ++||+|++..+++ ..++..+++++.++|||||++++.++..
T Consensus       111 ~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A          111 VPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             SCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             cccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            444 4599999999999 7899999999999999999999998755

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.65  E-value=1.2e-15  Score=140.49  Aligned_cols=115  Identities=14%  Similarity=0.196  Sum_probs=99.0

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      ..+.+.++..++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++...+  ...+++++.+|+.+ +++.
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~~  247 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFK-PLPV  247 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCSC
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCC-cCCC
Confidence            3445555566788999999999999999999987789999999 999999999988765  33589999999875 4443


Q ss_pred             CchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       .||+|++.+++||++++.  .+++++.++|||||++++.++
T Consensus       248 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          248 -TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             -CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence             499999999999999885  899999999999999999886

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.65  E-value=5.2e-16  Score=132.13  Aligned_cols=106  Identities=18%  Similarity=0.248  Sum_probs=89.6

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhhee
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~~  243 (314)
                      ++.+|||||||+|.++..+++..++.+++|+|+|+.+++.|++++...+.   .++.++++|+..++  +++++||.|++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~---~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA---QNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC---SSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC---CCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            56799999999999999999997778999999999999999999887763   68999999998765  66788999987


Q ss_pred             cchhccCCC--------HHHHHHHHHhhcccCcEEEEEe
Q 021344          244 GAALHCWPS--------PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       244 ~~vl~h~~d--------~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+...+...        ...+++++.++|||||.+++.+
T Consensus       115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            543322211        2578999999999999999987

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.65  E-value=9.9e-16  Score=127.37  Aligned_cols=103  Identities=18%  Similarity=0.231  Sum_probs=90.7

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++.        .++.++.+|+..+++++++||+|++.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~D~i~~~  114 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQDF--------PEARWVVGDLSVDQISETDFDLIVSA  114 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTSCCCCCCEEEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHhC--------CCCcEEEcccccCCCCCCceeEEEEC
Confidence            3678999999999999999999865  9999999999999999853        46899999999888878899999998


Q ss_pred             -chhccCCC--HHHHHHHHHhhcccCcEEEEEeccc
Q 021344          245 -AALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       245 -~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       .+++|+.+  ...+++++.++|||||++++.....
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence             78999854  4789999999999999999987553

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.65  E-value=1.2e-15  Score=139.41  Aligned_cols=120  Identities=13%  Similarity=0.202  Sum_probs=101.8

Q ss_pred             HHHHHhccCC-CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CC
Q 021344          157 MAQEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA  234 (314)
Q Consensus       157 ~l~~~l~~~~-~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~  234 (314)
                      .+.+.++..+ +.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++...+  ...+++++.+|+.+.+ +.
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~  245 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD--LGGRVEFFEKNLLDARNFE  245 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CGGGEEEEECCTTCGGGGT
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC--CCCceEEEeCCcccCcccC
Confidence            3444555555 78999999999999999999988889999999 889999999888765  3457999999998865 13


Q ss_pred             CCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecccCC
Q 021344          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      .++||+|++.+++||++++  ..+|+++.++|||||++++.+.....
T Consensus       246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (352)
T 3mcz_A          246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND  292 (352)
T ss_dssp             TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred             CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            4569999999999999877  78999999999999999998876543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.64  E-value=2.3e-16  Score=134.82  Aligned_cols=106  Identities=15%  Similarity=0.176  Sum_probs=89.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-C--CCCCchhhhe
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVH  242 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p--~~~~~fD~V~  242 (314)
                      ++.+|||||||+|.++..+++..++.+|+|+|+|+.+++.|+++++..+.   .++.++.+|+.++ +  +++++||.|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l---~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL---SNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC---SSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHcCCCChheEE
Confidence            56799999999999999999998878999999999999999999887763   6899999998773 3  6788999999


Q ss_pred             ecchhccCCCH--------HHHHHHHHhhcccCcEEEEEe
Q 021344          243 AGAALHCWPSP--------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       243 ~~~vl~h~~d~--------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +.+...+....        ..+++++.++|||||++++.+
T Consensus       111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            87543322211        258999999999999999988

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.64  E-value=1.5e-15  Score=137.88  Aligned_cols=119  Identities=16%  Similarity=0.115  Sum_probs=100.3

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      ...+.+.++..+ .+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...+  ...+++++.+|+.+ +++
T Consensus       157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~  231 (334)
T 2ip2_A          157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL--AGERVSLVGGDMLQ-EVP  231 (334)
T ss_dssp             HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH--HTTSEEEEESCTTT-CCC
T ss_pred             HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC--CCCcEEEecCCCCC-CCC
Confidence            344555555555 8999999999999999999987789999999 999999999876543  23689999999977 554


Q ss_pred             CCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEecccCC
Q 021344          235 SGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                       ++||+|++.+++||++++.  .+++++.++|||||++++.+.....
T Consensus       232 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  277 (334)
T 2ip2_A          232 -SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA  277 (334)
T ss_dssp             -SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred             -CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence             6799999999999998877  8999999999999999999876543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.64  E-value=6.5e-16  Score=141.66  Aligned_cols=124  Identities=12%  Similarity=0.115  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH-------hcCCCCCCCeEEEE
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-------QDNTILTSNLALVR  225 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-------~~~~~~~~~v~~~~  225 (314)
                      ..+..+.+.+...++.+|||||||+|.++..++......+++|||+++.+++.|+++.+       ..+. ...++++++
T Consensus       160 ~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl-~~~rVefi~  238 (438)
T 3uwp_A          160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLER  238 (438)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB-CCCEEEEEE
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC-CCCCeEEEE
Confidence            34566677777888999999999999999999877544579999999999999987542       2221 126899999


Q ss_pred             ecCCCCCCCC--CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          226 ADVCRLPFAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       226 ~d~~~lp~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +|+.++++.+  ..||+|+++..+ +.++....|.++.++|||||+|++.+....
T Consensus       239 GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          239 GDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             CCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             CcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence            9999988754  469999987765 457788899999999999999999876554

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.64  E-value=2.4e-16  Score=140.31  Aligned_cols=119  Identities=20%  Similarity=0.268  Sum_probs=87.6

Q ss_pred             HHHHHHhcc--CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--------------C-C
Q 021344          156 KMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--------------L-T  218 (314)
Q Consensus       156 ~~l~~~l~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--------------~-~  218 (314)
                      ..+.+.+..  .++.+|||||||+|.+...++... ..+|+|+|+|+.+++.|+++++.....              . .
T Consensus        59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccC-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            344444433  367899999999999544344322 349999999999999999866432100              0 0


Q ss_pred             ------------CCeEEEEecCCC-CCC-----CCCchhhheecchhcc----CCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          219 ------------SNLALVRADVCR-LPF-----ASGFVDAVHAGAALHC----WPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       219 ------------~~v~~~~~d~~~-lp~-----~~~~fD~V~~~~vl~h----~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                                  ..+.++.+|+.. +|+     ++++||+|++..+++|    ++++..+|+++.++|||||+|++...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~  216 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  216 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                        015677889987 664     3467999999999999    66788999999999999999999753

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.63  E-value=1.1e-15  Score=133.70  Aligned_cols=110  Identities=14%  Similarity=0.195  Sum_probs=88.9

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...         ++..++.+++.
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~  101 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADR---------CVTIDLLDITA  101 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSS---------CCEEEECCTTS
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhc---------cceeeeeeccc
Confidence            445666777777889999999999999999999876  9999999999999999976432         23344443332


Q ss_pred             -----CCCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEec
Q 021344          234 -----ASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 -----~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                           .+++||+|++..+++|+..  ...+++++.++| |||+++++..
T Consensus       102 ~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          102 EIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             CCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             ccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence                 2568999999999999864  457999999999 9999999874

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.63  E-value=9.6e-16  Score=137.95  Aligned_cols=110  Identities=20%  Similarity=0.260  Sum_probs=90.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCCCeEEEEecCCCCC----CC--C
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCRLP----FA--S  235 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----~~~~~v~~~~~d~~~lp----~~--~  235 (314)
                      ++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.++++....+.    ....++.++++|+..++    ++  +
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGR-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            57899999999999999998753 45999999999999999998765310    00247999999998876    53  4


Q ss_pred             CchhhheecchhccC-C---CHHHHHHHHHhhcccCcEEEEEecc
Q 021344          236 GFVDAVHAGAALHCW-P---SPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~-~---d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++||+|++..++||+ .   ++..+++++.++|||||++++.++.
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            589999999999988 3   3468999999999999999999864

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.63  E-value=9.8e-16  Score=132.42  Aligned_cols=111  Identities=19%  Similarity=0.207  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc---CCCCCCCeEEEEecCCC-CC--CCCCch
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---NTILTSNLALVRADVCR-LP--FASGFV  238 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~v~~~~~d~~~-lp--~~~~~f  238 (314)
                      .++.+|||||||+|.++..+++..++..++|+|+|+.+++.|+++++..   ......++.++++|+.. ++  +++++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            3467899999999999999999987789999999999999999876531   00023689999999987 66  778899


Q ss_pred             hhheecchhccCCC--------HHHHHHHHHhhcccCcEEEEEec
Q 021344          239 DAVHAGAALHCWPS--------PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       239 D~V~~~~vl~h~~d--------~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      |.|++.+.-.|...        ...+++++.++|||||.|++.+.
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence            99986543221110        03689999999999999999873

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.63  E-value=2.3e-16  Score=129.92  Aligned_cols=118  Identities=11%  Similarity=0.065  Sum_probs=96.4

Q ss_pred             CchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 021344          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  229 (314)
                      ..+.....+..++.  +..+|||+|||+|.++..++...+..+|+++|+|+.+++.+++++...+.  ..++.+  +|..
T Consensus        35 ~ld~fY~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~--~~~v~~--~d~~  108 (200)
T 3fzg_A           35 TLNDFYTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT--TIKYRF--LNKE  108 (200)
T ss_dssp             GHHHHHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC--SSEEEE--ECCH
T ss_pred             hHHHHHHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CccEEE--eccc
Confidence            34455556666664  37899999999999999999988888999999999999999999988762  235655  6664


Q ss_pred             CCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .. .+.++||+|++..++||+.+.+..+.++.+.|||||+++-..
T Consensus       109 ~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          109 SD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             HH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             cc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            43 356789999999999999766778889999999999987765

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.63  E-value=1.6e-15  Score=138.14  Aligned_cols=112  Identities=22%  Similarity=0.332  Sum_probs=96.2

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+++ +++.|+++++..+  ...+++++.+|+.++++++
T Consensus        54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNK--LEDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSC
T ss_pred             HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcC--CCCcEEEEEeeHHHhcCCC
Confidence            345555556678899999999999999999886 45899999997 9999999988876  3468999999999998888


Q ss_pred             Cchhhheecc---hhccCCCHHHHHHHHHhhcccCcEEE
Q 021344          236 GFVDAVHAGA---ALHCWPSPSNAVAEISRILRSGGVFV  271 (314)
Q Consensus       236 ~~fD~V~~~~---vl~h~~d~~~~l~~i~r~LkpGG~l~  271 (314)
                      ++||+|++..   .+.|..++..+++++.++|||||+++
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            8999999865   57777788899999999999999997

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.63  E-value=1.3e-15  Score=131.95  Aligned_cols=103  Identities=17%  Similarity=0.080  Sum_probs=89.6

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC---CCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~---~~~fD~V  241 (314)
                      .++.+|||||||+|.++..++...+..+|+|+|+|+.+++.++++.+..+.   .+++++++|+.++++.   +++||+|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEeccHHHhcccccccCCccEE
Confidence            467899999999999999999766667999999999999999999888763   4799999999877653   5789999


Q ss_pred             eecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++..    +.++..+++++.++|||||++++..
T Consensus       146 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          146 TARA----VARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             EEEC----CSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEec----cCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            9876    4678999999999999999998864

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.63  E-value=6e-16  Score=131.83  Aligned_cols=110  Identities=24%  Similarity=0.307  Sum_probs=88.2

Q ss_pred             HhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH----hcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK----QDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~----~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+...++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.+.+..+    ..+   ..++.++++|+.++|+.++
T Consensus        22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~---~~~v~~~~~d~~~l~~~~~   98 (218)
T 3mq2_A           22 QLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG---LPNLLYLWATAERLPPLSG   98 (218)
T ss_dssp             HHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC---CTTEEEEECCSTTCCSCCC
T ss_pred             HhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC---CCceEEEecchhhCCCCCC
Confidence            444567889999999999999999999777799999999998886443332    222   3589999999999998766


Q ss_pred             chhhhe---ecchh--ccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          237 FVDAVH---AGAAL--HCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       237 ~fD~V~---~~~vl--~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      + |.|+   ....+  +|++++..+++++.++|||||++++..
T Consensus        99 ~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A           99 V-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             E-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             C-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence            5 6555   33444  388999999999999999999999964

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.63  E-value=2.9e-15  Score=130.61  Aligned_cols=119  Identities=22%  Similarity=0.329  Sum_probs=101.5

Q ss_pred             CchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      ........+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++..+.  ..+++++.+|+
T Consensus        77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~  154 (255)
T 3mb5_A           77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF--DDRVTIKLKDI  154 (255)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC--TTTEEEECSCG
T ss_pred             ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC--CCceEEEECch
Confidence            34455567777888888999999999999999999998 6677999999999999999999988762  34599999999


Q ss_pred             CCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+. +++++||+|++     +.+++..+++++.++|||||++++..+.
T Consensus       155 ~~~-~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  196 (255)
T 3mb5_A          155 YEG-IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPC  196 (255)
T ss_dssp             GGC-CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             hhc-cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECC
Confidence            753 66778999987     4678889999999999999999998743

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.63  E-value=3.8e-15  Score=129.88  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=101.9

Q ss_pred             CchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCCeEEEEec
Q 021344          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRAD  227 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~~d  227 (314)
                      ........+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.++++++.. +   ..++.++.+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~d  156 (258)
T 2pwy_A           80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLGK  156 (258)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEESC
T ss_pred             ccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEECc
Confidence            33445566777777788899999999999999999998 65669999999999999999998775 4   2689999999


Q ss_pred             CCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +.+.++++++||+|++     +.+++..+++++.++|||||++++.++.
T Consensus       157 ~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  200 (258)
T 2pwy_A          157 LEEAELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPN  200 (258)
T ss_dssp             GGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred             hhhcCCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            9887777789999997     4678889999999999999999998843

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.62  E-value=4.1e-15  Score=136.39  Aligned_cols=115  Identities=17%  Similarity=0.317  Sum_probs=98.8

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.++..++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++...+  ...+++++.+|+.+ +++. 
T Consensus       174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~~-  248 (360)
T 1tw3_A          174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFE-PLPR-  248 (360)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCSS-
T ss_pred             HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCC-CCCC-
Confidence            444555666788999999999999999999988889999999 999999999988765  23589999999875 3444 


Q ss_pred             chhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEecc
Q 021344          237 FVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .||+|++.+++||++++.  .+++++.++|||||++++.++.
T Consensus       249 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            499999999999999874  8999999999999999998876

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.62  E-value=1.6e-15  Score=134.04  Aligned_cols=112  Identities=21%  Similarity=0.222  Sum_probs=93.6

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCCeEEEEecCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.++++++.. +   ..+++++.+|+.+ ++
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~-~~  175 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIAD-FI  175 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTT-CC
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECchhc-cC
Confidence            45666677778899999999999999999987 55569999999999999999998875 4   2689999999987 66


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++++||+|++     |++++..+++++.++|||||++++.+..
T Consensus       176 ~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~  213 (275)
T 1yb2_A          176 SDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN  213 (275)
T ss_dssp             CSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             cCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            6778999998     6788999999999999999999998843

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.62  E-value=2.1e-15  Score=129.80  Aligned_cols=102  Identities=14%  Similarity=0.195  Sum_probs=87.0

Q ss_pred             HhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----CCCCCC
Q 021344          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASG  236 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----lp~~~~  236 (314)
                      .+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.++++.+..     .++.++.+|+..    .++. +
T Consensus        69 ~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~-~  142 (230)
T 1fbn_A           69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIV-E  142 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTS-C
T ss_pred             ccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-----CCeEEEECCCCCcccccccC-c
Confidence            34455788999999999999999999854569999999999999999876542     689999999988    6665 7


Q ss_pred             chhhheecchhccCCCH---HHHHHHHHhhcccCcEEEEE
Q 021344          237 FVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~  273 (314)
                      +||+|+     ++++++   ..+++++.++|||||++++.
T Consensus       143 ~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          143 KVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            899998     556777   78899999999999999997

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.62  E-value=1.4e-15  Score=127.42  Aligned_cols=114  Identities=18%  Similarity=0.256  Sum_probs=92.8

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCCchhh
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA  240 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~~fD~  240 (314)
                      ...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.|+++++..+  ...+++++++|+..++ +.+++||+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~   96 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIKDGHQNMDKYIDCPVKA   96 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT--CGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHhhhccCCceE
Confidence            3456789999999999999999987 345699999999999999999998865  2368999999988775 55688999


Q ss_pred             heecchhc---------cCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          241 VHAGAALH---------CWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       241 V~~~~vl~---------h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      |++...+.         +..+...+++++.++|||||++++..+...
T Consensus        97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~  143 (197)
T 3eey_A           97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGG  143 (197)
T ss_dssp             EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBT
T ss_pred             EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCC
Confidence            99876541         111345799999999999999999886543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.62  E-value=8e-16  Score=129.75  Aligned_cols=121  Identities=11%  Similarity=0.088  Sum_probs=94.4

Q ss_pred             HHHHHHHHhccC-CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC-CCeEEEEecCCCC
Q 021344          154 EFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRL  231 (314)
Q Consensus       154 ~~~~l~~~l~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-~~v~~~~~d~~~l  231 (314)
                      ..+.+.+.+... ++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|+++++..+.  . .+++++.+|+.+.
T Consensus        40 ~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~v~~~~~d~~~~  116 (201)
T 2ift_A           40 VKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKC--SSEQAEVINQSSLDF  116 (201)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC--CTTTEEEECSCHHHH
T ss_pred             HHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCC--CccceEEEECCHHHH
Confidence            333444444332 578999999999999998777763 4899999999999999999987652  1 5899999998664


Q ss_pred             CC--CCCc-hhhheecchhccCCCHHHHHHHH--HhhcccCcEEEEEecccC
Q 021344          232 PF--ASGF-VDAVHAGAALHCWPSPSNAVAEI--SRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       232 p~--~~~~-fD~V~~~~vl~h~~d~~~~l~~i--~r~LkpGG~l~i~~~~~~  278 (314)
                      ..  .+++ ||+|++...++ ..+...+++.+  .++|||||++++......
T Consensus       117 ~~~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          117 LKQPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             TTSCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             HHhhccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            32  3578 99999987744 56777889999  678999999999886554

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.62  E-value=3.7e-16  Score=136.73  Aligned_cols=111  Identities=18%  Similarity=0.348  Sum_probs=90.7

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--------------C------------C
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--------------L------------T  218 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--------------~------------~  218 (314)
                      .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.+++++...+..              .            .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            4567999999999999999888764 58999999999999999987643200              0            0


Q ss_pred             CCe-EEEEecCCCCC-CCC---Cchhhheecchhc----cCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          219 SNL-ALVRADVCRLP-FAS---GFVDAVHAGAALH----CWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       219 ~~v-~~~~~d~~~lp-~~~---~~fD~V~~~~vl~----h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .++ .++.+|+.+.+ +.+   ++||+|++..+++    |+.++..+++++.++|||||++++.+..
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            027 89999998754 345   7899999999999    6667889999999999999999998754

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.62  E-value=2.3e-15  Score=137.62  Aligned_cols=119  Identities=14%  Similarity=0.155  Sum_probs=93.4

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.++..++.+|||||||+|.++..+++.++..+++++|++ .++.  +++.+..+  ...+++++.+|+. .+++  
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~--~~~~v~~~~~d~~-~~~p--  246 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPD--VAGRWKVVEGDFL-REVP--  246 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGG--GTTSEEEEECCTT-TCCC--
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccC--CCCCeEEEecCCC-CCCC--
Confidence            3445556667889999999999999999999888899999994 4444  22222222  2467999999996 3444  


Q ss_pred             chhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecccCCCCCc
Q 021344          237 FVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTS  283 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~  283 (314)
                      +||+|++.+++||++|+  ..+|++++++|||||++++.+........+
T Consensus       247 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~  295 (348)
T 3lst_A          247 HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA  295 (348)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC
T ss_pred             CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc
Confidence            79999999999999998  699999999999999999988765543333

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.61  E-value=2.3e-15  Score=137.61  Aligned_cols=108  Identities=16%  Similarity=0.253  Sum_probs=92.7

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..+  ...+++++.+|+.++++++++||+|+
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s~-~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~Ii  138 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSS-ISDYAVKIVKANK--LDHVVTIIKGKVEEVELPVEKVDIII  138 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcHH-HHHHHHHHHHHcC--CCCcEEEEECcHHHccCCCCceEEEE
Confidence            34568899999999999999999985 45999999995 9999999998876  34569999999999988889999999


Q ss_pred             ecch---hccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          243 AGAA---LHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       243 ~~~v---l~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +..+   +.+..++..+++++.++|||||+++...
T Consensus       139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A          139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             EccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence            8654   5556888999999999999999987433

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.61  E-value=3e-15  Score=135.12  Aligned_cols=114  Identities=13%  Similarity=0.130  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .....+.+.+...++.+|||||||+|.++..+++.+. ..+|+|+|+|+.+++.|+++++..+.   .+++++.+|+.+.
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~---~~v~~~~~d~~~~  138 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI---ENVIFVCGDGYYG  138 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGC
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCeEEEECChhhc
Confidence            3455677777777899999999999999999998876 35799999999999999999987763   5699999999875


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +..+++||+|++..+++|+.      +++.++|||||++++...
T Consensus       139 ~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          139 VPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             CGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred             cccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence            54567899999999999986      578899999999999764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.61  E-value=2.9e-15  Score=127.22  Aligned_cols=104  Identities=13%  Similarity=0.112  Sum_probs=81.5

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCCCch
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFV  238 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p~~~~~f  238 (314)
                      ...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.+..+..     .++.++.+|+...    ++. ++|
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~-~~f  127 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIV-EKV  127 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTC-CCE
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-----CCeEEEEcCCCCchhhcccc-cce
Confidence            445788999999999999999998754559999999999887666655432     5788999998763    444 789


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+|++.. .++ .+...+++++.++|||||++++..
T Consensus       128 D~V~~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          128 DLIYQDI-AQK-NQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEEECC-CST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEec-cCh-hHHHHHHHHHHHHhCCCCEEEEEE
Confidence            9999872 222 233456999999999999999985

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.61  E-value=4.6e-15  Score=136.74  Aligned_cols=125  Identities=14%  Similarity=0.110  Sum_probs=100.6

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .+...+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.++++++..+.....+++++.+|+.+
T Consensus       207 ~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~  286 (375)
T 4dcm_A          207 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS  286 (375)
T ss_dssp             CCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT
T ss_pred             ccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc
Confidence            34445677788877777899999999999999999998777999999999999999999988763112368999999987


Q ss_pred             CCCCCCchhhheecchhccCCC-----HHHHHHHHHhhcccCcEEEEEecc
Q 021344          231 LPFASGFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d-----~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       ++++++||+|+++..+++...     ...+++++.++|||||++++....
T Consensus       287 -~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          287 -GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             -TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             -cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence             556789999999988876322     236899999999999999998743

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.60  E-value=3.2e-15  Score=123.93  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=98.6

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .......+.+.+...++.+|||+|||+|.++..+++.+  .+++++|+++.+++.+++++...+  ...++.++.+|+..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~   93 (192)
T 1l3i_A           18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPE   93 (192)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHHH
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC--CCcceEEEecCHHH
Confidence            44555667777777788999999999999999999987  499999999999999999988765  23589999999865


Q ss_pred             CCCCC-CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          231 LPFAS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       231 lp~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       ++++ ++||+|++..+++|   ...+++++.++|+|||++++.++.
T Consensus        94 -~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~~  136 (192)
T 1l3i_A           94 -ALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAIL  136 (192)
T ss_dssp             -HHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             -hcccCCCCCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEecC
Confidence             3333 58999999887754   588999999999999999998854

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=7e-15  Score=121.02  Aligned_cols=115  Identities=16%  Similarity=0.210  Sum_probs=98.1

Q ss_pred             CchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 021344          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  229 (314)
                      ......+.+.+.+...++.+|||+|||+|.++..+++.  ..+++|+|+++.+++.++++++..+.   .+++++.+|+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~   93 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKR--CKFVYAIDYLDGAIEVTKQNLAKFNI---KNCQIIKGRAE   93 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTT--SSEEEEEECSHHHHHHHHHHHHHTTC---CSEEEEESCHH
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCC---CcEEEEECCcc
Confidence            34455667777777778889999999999999999983  45999999999999999999987762   57999999987


Q ss_pred             CCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      + ++++++||+|++..+    .++..+++++.++  |||.+++.++.
T Consensus        94 ~-~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~  133 (183)
T 2yxd_A           94 D-VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIV  133 (183)
T ss_dssp             H-HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred             c-cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecc
Confidence            7 666788999999888    6788999999998  99999998843

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.60  E-value=4.2e-15  Score=125.38  Aligned_cols=113  Identities=19%  Similarity=0.187  Sum_probs=93.4

Q ss_pred             HHHHHHHHhccC---CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          154 EFKMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       154 ~~~~l~~~l~~~---~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ..+.+.+.+...   ++.+|||+|||+|.++..++...+..+++|+|+|+.+++.+++++...+.   .++.++.+|+.+
T Consensus        50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~  126 (207)
T 1jsx_A           50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL---ENIEPVQSRVEE  126 (207)
T ss_dssp             HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC---SSEEEEECCTTT
T ss_pred             HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEecchhh
Confidence            344455544332   37899999999999999999986667999999999999999999887652   459999999988


Q ss_pred             CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+ +.++||+|++..    +.+...+++++.++|||||++++..
T Consensus       127 ~~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~  165 (207)
T 1jsx_A          127 FP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             SC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CC-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            66 457899999754    3567899999999999999999976

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.60  E-value=9.7e-16  Score=126.16  Aligned_cols=121  Identities=16%  Similarity=0.152  Sum_probs=94.6

Q ss_pred             HHHHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C
Q 021344          154 EFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L  231 (314)
Q Consensus       154 ~~~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l  231 (314)
                      ..+.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|+++++..+  ...++.++.+|+.+ +
T Consensus        18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~   94 (177)
T 2esr_A           18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAI   94 (177)
T ss_dssp             CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHH
T ss_pred             HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcHHHhH
Confidence            3445555555 4567899999999999999999884 4599999999999999999998765  23479999999876 3


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHH--hhcccCcEEEEEecccC
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLRY  278 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~--r~LkpGG~l~i~~~~~~  278 (314)
                      +..+++||+|++...+++ .+....++.+.  ++|||||++++......
T Consensus        95 ~~~~~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           95 DCLTGRFDLVFLDPPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             HHBCSCEEEEEECCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HhhcCCCCEEEECCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            444567999999766432 34456777777  99999999999886654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=4.9e-15  Score=125.79  Aligned_cols=116  Identities=16%  Similarity=0.096  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .....+.+.+...++.+|||||||+|.++..+++.+ +..+++++|+++.+++.+++++...+.   .++.++.+|+...
T Consensus        64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~  140 (215)
T 2yxe_A           64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY---DNVIVIVGDGTLG  140 (215)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC---TTEEEEESCGGGC
T ss_pred             HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEECCcccC
Confidence            344566667777788899999999999999999886 446999999999999999998887652   5699999998543


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ...+++||+|++..+++|++      +++.++|||||++++.....
T Consensus       141 ~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          141 YEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             CGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred             CCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence            22367899999999999986      48899999999999988543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.60  E-value=3.8e-15  Score=127.81  Aligned_cols=108  Identities=15%  Similarity=0.203  Sum_probs=91.2

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---CCCCCCc
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGF  237 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---lp~~~~~  237 (314)
                      +..++|.+|||+|||+|.++..+++. |+..+|+|+|+++.+++.++++.+..     .|+..+.+|...   .++..++
T Consensus        73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-----~ni~~V~~d~~~p~~~~~~~~~  147 (233)
T 4df3_A           73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-----RNIFPILGDARFPEKYRHLVEG  147 (233)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-----TTEEEEESCTTCGGGGTTTCCC
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-----cCeeEEEEeccCccccccccce
Confidence            55789999999999999999999987 77789999999999999998876543     589999999865   3456678


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +|+|++.  +.|..++..+++++.++|||||++++....
T Consensus       148 vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~  184 (233)
T 4df3_A          148 VDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKA  184 (233)
T ss_dssp             EEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEec
Confidence            9998863  556667889999999999999999987533

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.60  E-value=2.5e-15  Score=126.76  Aligned_cols=122  Identities=10%  Similarity=0.088  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHhccC-CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      +...+.+.+.+... ++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|+++++..+.   .+++++++|+.+
T Consensus        39 ~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~D~~~  114 (202)
T 2fpo_A           39 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKA---GNARVVNSNAMS  114 (202)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHH
Confidence            34444555555432 578999999999999998777763 4899999999999999999988762   689999999876


Q ss_pred             -CCCCCCchhhheecchhccCCCHHHHHHHHHh--hcccCcEEEEEecccC
Q 021344          231 -LPFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLRY  278 (314)
Q Consensus       231 -lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r--~LkpGG~l~i~~~~~~  278 (314)
                       ++..+++||+|++...+ |..+...+++.+.+  +|||||++++......
T Consensus       115 ~~~~~~~~fD~V~~~~p~-~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A          115 FLAQKGTPHNIVFVDPPF-RRGLLEETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             HHSSCCCCEEEEEECCSS-STTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             HHhhcCCCCCEEEECCCC-CCCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence             45556789999997764 35677888999876  5999999999886543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.60  E-value=3.7e-15  Score=137.55  Aligned_cols=105  Identities=18%  Similarity=0.232  Sum_probs=93.5

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.+++++...+    .+++++.+|+.+.+..+++||+|+++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~~----~~v~~~~~D~~~~~~~~~~fD~Ii~n  305 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEANA----LKAQALHSDVDEALTEEARFDIIVTN  305 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHTT----CCCEEEECSTTTTSCTTCCEEEEEEC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC----CCeEEEEcchhhccccCCCeEEEEEC
Confidence            3577999999999999999999865  99999999999999999998876    45899999999887666899999999


Q ss_pred             chhcc-----CCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          245 AALHC-----WPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       245 ~vl~h-----~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ..+++     ..+...+++++.++|||||++++...
T Consensus       306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n  341 (381)
T 3dmg_A          306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN  341 (381)
T ss_dssp             CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence            88888     44567899999999999999999873

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.60  E-value=2.6e-15  Score=124.39  Aligned_cols=126  Identities=15%  Similarity=0.137  Sum_probs=98.5

Q ss_pred             CCchHHHHHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          149 PGPDEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      +..+...+.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|++++...+  ...+++++.+|
T Consensus        26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d  102 (187)
T 2fhp_A           26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMD  102 (187)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESC
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC--CCcceEEEECc
Confidence            334455556666664 3467899999999999999888865 4599999999999999999988765  23579999999


Q ss_pred             CCCCC----CCCCchhhheecchhccCCCHHHHHHHH--HhhcccCcEEEEEecccC
Q 021344          228 VCRLP----FASGFVDAVHAGAALHCWPSPSNAVAEI--SRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       228 ~~~lp----~~~~~fD~V~~~~vl~h~~d~~~~l~~i--~r~LkpGG~l~i~~~~~~  278 (314)
                      +.+..    ..+++||+|++...++ ..+....++.+  .++|||||++++......
T Consensus       103 ~~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          103 ANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HHHHHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            86632    2367899999987744 45677788888  889999999999886654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.60  E-value=6.7e-15  Score=126.34  Aligned_cols=112  Identities=15%  Similarity=0.139  Sum_probs=94.2

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .....+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++++...     .++.++.+|+....
T Consensus        57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~  129 (231)
T 1vbf_A           57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGY  129 (231)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcC--EEEEEeCCHHHHHHHHHHHhhc-----CCeEEEECCccccc
Confidence            4455667777777888999999999999999999874  9999999999999999987653     27999999987633


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ..+++||+|++..+++|+.      +++.++|||||++++.....
T Consensus       130 ~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          130 EEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             ccCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence            3467899999999999986      46889999999999987543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.60  E-value=3.8e-15  Score=125.57  Aligned_cols=104  Identities=17%  Similarity=0.199  Sum_probs=89.5

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.|++++...+.   .+++++.+|+.+.+  +++||+|++.
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~--~~~fD~i~~~  132 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLG-AKSVLATDISDESMTAAEENAALNGI---YDIALQKTSLLADV--DGKFDLIVAN  132 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC---CCCEEEESSTTTTC--CSCEEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEeccccccC--CCCceEEEEC
Confidence            457899999999999999998864 45999999999999999999887762   34999999997643  5789999999


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .+++++   ..+++++.++|||||++++.++..
T Consensus       133 ~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~  162 (205)
T 3grz_A          133 ILAEIL---LDLIPQLDSHLNEDGQVIFSGIDY  162 (205)
T ss_dssp             SCHHHH---HHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred             CcHHHH---HHHHHHHHHhcCCCCEEEEEecCc
Confidence            888874   788999999999999999987543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.59  E-value=4.1e-15  Score=128.18  Aligned_cols=121  Identities=11%  Similarity=0.186  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ......+...+...++.+|||||||+|.++..+++..+..+|+++|+++.+++.|+++++..+  ...+++++.+|+.+.
T Consensus        57 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~  134 (232)
T 3ntv_A           57 RLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH--FENQVRIIEGNALEQ  134 (232)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGC
T ss_pred             HHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHH
Confidence            344556666666667889999999999999999997667799999999999999999998876  335899999999663


Q ss_pred             -C-CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          232 -P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       232 -p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       + ..+++||+|++...   ..+...+++++.++|||||++++.....
T Consensus       135 ~~~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~~  179 (232)
T 3ntv_A          135 FENVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVLY  179 (232)
T ss_dssp             HHHHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred             HHhhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence             3 33678999997654   4456789999999999999999866544

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.59  E-value=1.8e-15  Score=129.34  Aligned_cols=123  Identities=10%  Similarity=0.178  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ......+...+...++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|+++++..+  ...+++++.+|+.+
T Consensus        44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~  121 (221)
T 3u81_A           44 DAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG--LQDKVTILNGASQD  121 (221)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC--CCCceEEEECCHHH
Confidence            3344555555555678899999999999999999863 35699999999999999999998876  23579999999754


Q ss_pred             -CCCCC-----CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 -LPFAS-----GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 -lp~~~-----~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       ++...     ++||+|++....++..+...++..+ ++|||||++++.+...
T Consensus       122 ~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          122 LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             HGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             HHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence             33222     6899999998888876666778888 9999999999877553

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.59  E-value=8.2e-15  Score=129.52  Aligned_cols=120  Identities=17%  Similarity=0.207  Sum_probs=100.8

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCCeEEEEecC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADV  228 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~~d~  228 (314)
                      .......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++.. +. ...++.++.+|+
T Consensus        84 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~-~~~~v~~~~~d~  162 (280)
T 1i9g_A           84 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-PPDNWRLVVSDL  162 (280)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-CCTTEEEECSCG
T ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCCcEEEEECch
Confidence            3445566777777778899999999999999999985 55569999999999999999988765 20 126899999999


Q ss_pred             CCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+.++++++||+|++     +++++..+++++.++|||||++++.++.
T Consensus       163 ~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          163 ADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             GGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             HhcCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            888777789999997     5678889999999999999999998853

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.59  E-value=1.1e-15  Score=124.69  Aligned_cols=120  Identities=16%  Similarity=0.188  Sum_probs=94.1

Q ss_pred             chHHHHHHHHHhccC--CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          151 PDEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~--~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      .....+.+.+.+...  ++.+|||+|||+|.++..+++.++  +++|+|+|+.+++.+++++...+    .+++++++|+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~   97 (171)
T 1ws6_A           24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTG----LGARVVALPV   97 (171)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHT----CCCEEECSCH
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcC----CceEEEeccH
Confidence            344444555555432  678999999999999999999987  69999999999999999988765    2899999998


Q ss_pred             CCC-C-CC--CCchhhheecchhccCCCHHHHHHHHH--hhcccCcEEEEEecccC
Q 021344          229 CRL-P-FA--SGFVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLRY  278 (314)
Q Consensus       229 ~~l-p-~~--~~~fD~V~~~~vl~h~~d~~~~l~~i~--r~LkpGG~l~i~~~~~~  278 (314)
                      .+. + ..  .++||+|++..+++  .+...+++.+.  ++|||||++++.+....
T Consensus        98 ~~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A           98 EVFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             HHHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            662 2 11  24799999987765  55667777777  99999999999886543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.59  E-value=1.5e-14  Score=125.87  Aligned_cols=121  Identities=12%  Similarity=0.143  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ......+.......++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+  ...+++++.+|+.+
T Consensus        49 ~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~  126 (248)
T 3tfw_A           49 ANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG--VDQRVTLREGPALQ  126 (248)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHH
Confidence            33444455454556788999999999999999999854 5699999999999999999998876  34589999999865


Q ss_pred             -CCCC--CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 -LPFA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 -lp~~--~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       ++..  .++||+|++...   ..+...+++++.++|||||++++.....
T Consensus       127 ~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          127 SLESLGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             HHHTCCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             HHHhcCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence             3322  348999998654   3345688999999999999999977654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.58  E-value=2.1e-14  Score=123.10  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=88.2

Q ss_pred             cCCCCeEEEEcCc-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-CCCCCchhhh
Q 021344          164 SAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAV  241 (314)
Q Consensus       164 ~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p~~~~~fD~V  241 (314)
                      ..++.+|||+||| +|.++..+++.. ..+|+|+|+++.+++.|++++...+    .+++++.+|+..+ ++++++||+|
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~fD~I  127 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN----SNVRLVKSNGGIIKGVVEGTFDVI  127 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT----CCCEEEECSSCSSTTTCCSCEEEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEeCCchhhhhcccCceeEE
Confidence            3468899999999 999999999984 3499999999999999999998876    3899999997433 4556899999


Q ss_pred             eecchhccCCC-------------------HHHHHHHHHhhcccCcEEEEEecc
Q 021344          242 HAGAALHCWPS-------------------PSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       242 ~~~~vl~h~~d-------------------~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +++-.+++..+                   ...+++++.++|||||++++....
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD  181 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence            99866554433                   378899999999999999997743

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.58  E-value=9.4e-15  Score=132.47  Aligned_cols=112  Identities=18%  Similarity=0.288  Sum_probs=93.6

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|++ .+++.|+++++..+  ...+++++.+|+.+++++++
T Consensus        29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~  104 (328)
T 1g6q_1           29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELNG--FSDKITLLRGKLEDVHLPFP  104 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSSS
T ss_pred             HHHhhHhhcCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHcC--CCCCEEEEECchhhccCCCC
Confidence            34344444567899999999999999999875 3589999999 58999999988876  34679999999999888778


Q ss_pred             chhhheecc---hhccCCCHHHHHHHHHhhcccCcEEEE
Q 021344          237 FVDAVHAGA---ALHCWPSPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       237 ~fD~V~~~~---vl~h~~d~~~~l~~i~r~LkpGG~l~i  272 (314)
                      +||+|++..   .+.+..++..++.++.++|||||+++.
T Consensus       105 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            999999864   455667788999999999999999973

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.58  E-value=8.2e-15  Score=127.38  Aligned_cols=102  Identities=20%  Similarity=0.367  Sum_probs=86.3

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--------CCCCCCCeEEEEecCCC-CC--C
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--------NTILTSNLALVRADVCR-LP--F  233 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~~~~~~v~~~~~d~~~-lp--~  233 (314)
                      .++.+|||||||+|.++..+++.++..+++|+|+|+.+++.++++++..        +.   .++.++.+|+.+ ++  +
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~---~nv~~~~~D~~~~l~~~~  124 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF---QNINVLRGNAMKFLPNFF  124 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT---TTEEEEECCTTSCGGGTS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC---CcEEEEeccHHHHHHHhc
Confidence            3567899999999999999999987779999999999999999987764        32   589999999986 55  6


Q ss_pred             CCCchhhheecchhccCCCH-------------HHHHHHHHhhcccCcEEEEEe
Q 021344          234 ASGFVDAVHAGAALHCWPSP-------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~-------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .++++|.|+..     ++++             ..+++++.++|||||+|++.+
T Consensus       125 ~~~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          125 EKGQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             CTTCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            67788888743     4555             479999999999999999976

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.58  E-value=2.9e-15  Score=136.69  Aligned_cols=119  Identities=18%  Similarity=0.240  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      +...+.+.+.+...++.+|||+|||+|.++..+++.++..+++++|+|+.+++.+++++...+    ..+.++.+|+...
T Consensus       182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~d~~~~  257 (343)
T 2pjd_A          182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG----VEGEVFASNVFSE  257 (343)
T ss_dssp             CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT----CCCEEEECSTTTT
T ss_pred             cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCEEEEcccccc
Confidence            445667777776556789999999999999999999877799999999999999999998765    3467889998765


Q ss_pred             CCCCCchhhheecchhcc-----CCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          232 PFASGFVDAVHAGAALHC-----WPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h-----~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +  +++||+|+++.++|+     ..+...+++++.++|||||.+++....
T Consensus       258 ~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          258 V--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             C--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             c--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            4  678999999988875     345678999999999999999998753

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.58  E-value=3.5e-15  Score=127.96  Aligned_cols=91  Identities=14%  Similarity=0.277  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCCCC-CCchhhhe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFA-SGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~lp~~-~~~fD~V~  242 (314)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++        ..+++++++|+ ..+|++ +++||+|+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~~fD~v~  116 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARAN--------APHADVYEWNGKGELPAGLGAPFGLIV  116 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCSCSSCCTTCCCCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------CCCceEEEcchhhccCCcCCCCEEEEE
Confidence            4578999999999999999999865  999999999999999986        25799999999 568887 88999999


Q ss_pred             ecchhccCCCHHHHHHHHHhhcccCcEEE
Q 021344          243 AGAALHCWPSPSNAVAEISRILRSGGVFV  271 (314)
Q Consensus       243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~  271 (314)
                      +.      .++..+++++.++|||||+++
T Consensus       117 ~~------~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          117 SR------RGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EE------SCCSGGGGGHHHHEEEEEEEE
T ss_pred             eC------CCHHHHHHHHHHHcCCCcEEE
Confidence            87      467888999999999999998

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.57  E-value=1.7e-14  Score=124.18  Aligned_cols=122  Identities=16%  Similarity=0.185  Sum_probs=100.4

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .......+...+...++.+|||+|||+|.++..+++..+..+|+++|+++.+++.|+++++..+  ...++.++.+|+..
T Consensus        39 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~  116 (233)
T 2gpy_A           39 DLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG--LESRIELLFGDALQ  116 (233)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCGGG
T ss_pred             CHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHH
Confidence            3444556666666667889999999999999999998766799999999999999999998776  23579999999876


Q ss_pred             C-CCC--CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 L-PFA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 l-p~~--~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      . +..  +++||+|++....+   +...+++++.++|||||++++.+...
T Consensus       117 ~~~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~  163 (233)
T 2gpy_A          117 LGEKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDNVLF  163 (233)
T ss_dssp             SHHHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred             HHHhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence            4 433  57899999987754   67899999999999999999986543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.57  E-value=1.4e-14  Score=128.05  Aligned_cols=118  Identities=14%  Similarity=0.175  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      +...+.+.+.+. .++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.++++++..+.   .++.++++|+.. 
T Consensus        96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~v~~~~~d~~~-  170 (276)
T 2b3t_A           96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFS-  170 (276)
T ss_dssp             HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTG-
T ss_pred             HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEEcchhh-
Confidence            334555666655 467799999999999999999886677999999999999999999887763   479999999876 


Q ss_pred             CCCCCchhhheec-------------chhccCC------------CHHHHHHHHHhhcccCcEEEEEe
Q 021344          232 PFASGFVDAVHAG-------------AALHCWP------------SPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 p~~~~~fD~V~~~-------------~vl~h~~------------d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++++++||+|+++             .+++|.+            +...+++++.++|||||++++..
T Consensus       171 ~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          171 ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            3446789999997             4555543            34678999999999999999975

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.57  E-value=1.6e-16  Score=137.48  Aligned_cols=115  Identities=16%  Similarity=0.163  Sum_probs=96.0

Q ss_pred             HHHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          155 FKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       155 ~~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      .+.+...+. ..++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++..+  ...+++++++|+.+++ 
T Consensus        66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-  140 (241)
T 3gdh_A           66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGM--RVIAIDIDPVKIALARNNAEVYG--IADKIEFICGDFLLLA-  140 (241)
T ss_dssp             HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHG-
T ss_pred             HHHHHHHhhhccCCCEEEECccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC--CCcCeEEEECChHHhc-
Confidence            344444332 23688999999999999999999874  99999999999999999998876  2258999999998776 


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+++||+|++..+++|..++...+.++.++|||||++++..
T Consensus       141 ~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          141 SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence            56789999999999998888778888999999999977654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.57  E-value=1.6e-14  Score=127.67  Aligned_cols=116  Identities=20%  Similarity=0.285  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++..+  ...++.++.+|+.+
T Consensus        98 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~  175 (277)
T 1o54_A           98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISE  175 (277)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHH
Confidence            344566777778888899999999999999999998 666799999999999999999988765  23579999999876


Q ss_pred             CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      . +++++||+|++     +.+++..+++++.++|||||++++.+.
T Consensus       176 ~-~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          176 G-FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             C-CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             c-ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            5 55678999997     457888999999999999999999884

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.57  E-value=7.4e-15  Score=120.47  Aligned_cols=106  Identities=15%  Similarity=0.178  Sum_probs=87.7

Q ss_pred             HHHHHHHHhcc--CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          154 EFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       154 ~~~~l~~~l~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ..+.+.+.+..  .++.+|||+|||+|.++..+++.+   +|+|+|+|+.+++.        .    .+++++++|+.+ 
T Consensus         9 ~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~--------~----~~~~~~~~d~~~-   72 (170)
T 3q87_B            9 DTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES--------H----RGGNLVRADLLC-   72 (170)
T ss_dssp             HHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT--------C----SSSCEEECSTTT-
T ss_pred             cHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc--------c----cCCeEEECChhh-
Confidence            33344444544  567899999999999999999987   99999999999887        1    578999999987 


Q ss_pred             CCCCCchhhheecchhccCCCH---------HHHHHHHHhhcccCcEEEEEecc
Q 021344          232 PFASGFVDAVHAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~---------~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++.+++||+|+++..+++..+.         ..+++++.+.| |||++++....
T Consensus        73 ~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~  125 (170)
T 3q87_B           73 SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE  125 (170)
T ss_dssp             TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred             hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence            6667899999999888877665         57889999999 99999998854

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.57  E-value=5.6e-15  Score=129.41  Aligned_cols=115  Identities=11%  Similarity=0.248  Sum_probs=93.3

Q ss_pred             HHHHHhccC-CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--C
Q 021344          157 MAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F  233 (314)
Q Consensus       157 ~l~~~l~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~  233 (314)
                      .+..++... ++.+|||+|||+|.++..+++.++. +|+|+|+++.+++.|++++...+  ...++.++++|+.+.+  +
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~--~~~~v~~~~~D~~~~~~~~  115 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQ--LEDQIEIIEYDLKKITDLI  115 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTT--CTTTEEEECSCGGGGGGTS
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCC--CcccEEEEECcHHHhhhhh
Confidence            455566666 7889999999999999999998754 99999999999999999998876  3457999999998765  4


Q ss_pred             CCCchhhheecchhccC-----C---------------CHHHHHHHHHhhcccCcEEEEEe
Q 021344          234 ASGFVDAVHAGAALHCW-----P---------------SPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~-----~---------------d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++++||+|+++-.+.+.     .               +...+++.+.++|||||++++..
T Consensus       116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  176 (259)
T 3lpm_A          116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH  176 (259)
T ss_dssp             CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence            57899999996443222     1               23578999999999999999965

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.57  E-value=8.6e-15  Score=129.03  Aligned_cols=109  Identities=13%  Similarity=0.199  Sum_probs=85.1

Q ss_pred             CCCeEEEEcCcccH----HHHHHHHh-CC---CCeEEEEeCCHHHHHHHHHHHHhc----------------------C-
Q 021344          166 QGGLLVDVSCGSGL----FSRKFAKS-GT---YSGVVALDFSENMLRQCYDFIKQD----------------------N-  214 (314)
Q Consensus       166 ~~~~iLDiGcG~G~----~~~~l~~~-~~---~~~v~giD~s~~~~~~a~~~~~~~----------------------~-  214 (314)
                      ++.+|||+|||+|.    ++..+++. +.   +.+|+|+|+|+.+++.|++.....                      + 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35689999999998    55556655 21   248999999999999999864100                      0 


Q ss_pred             -C----CCCCCeEEEEecCCCCCCC-CCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEe
Q 021344          215 -T----ILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       215 -~----~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~  274 (314)
                       .    ....++.|.++|+.+.|++ .++||+|+|.+|++|+.++  .+++++++++|||||+|++..
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence             0    0003699999999886665 5789999999999999876  689999999999999998843

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.57  E-value=5.5e-15  Score=128.81  Aligned_cols=103  Identities=13%  Similarity=0.019  Sum_probs=90.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC---CCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~---~~~fD~V  241 (314)
                      .++.+|||||||+|..+..++...+..+|+++|+++.+++.++++++..+.   .+++++++|+++++..   +++||+|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l---~~v~~~~~d~~~~~~~~~~~~~fD~I  155 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL---KGARALWGRAEVLAREAGHREAYARA  155 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CceEEEECcHHHhhcccccCCCceEE
Confidence            457899999999999999999887778999999999999999999988763   5699999999876643   4789999


Q ss_pred             eecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++..+    .+...+++.+.++|||||++++..
T Consensus       156 ~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          156 VARAV----APLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             EEESS----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EECCc----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence            98653    577899999999999999998866

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.57  E-value=9.4e-15  Score=134.89  Aligned_cols=114  Identities=18%  Similarity=0.231  Sum_probs=94.6

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.....++.+|||||||+|.++..+++.+. .+|+|+|+| .+++.|+++++..+  ...+++++.+|+.+++++ +
T Consensus        54 ~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~  128 (376)
T 3r0q_C           54 AVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKANN--LDHIVEVIEGSVEDISLP-E  128 (376)
T ss_dssp             HHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHTT--CTTTEEEEESCGGGCCCS-S
T ss_pred             HHHhccccCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHcC--CCCeEEEEECchhhcCcC-C
Confidence            444445556788999999999999999999863 499999999 99999999998877  346799999999988876 7


Q ss_pred             chhhheecchhcc---CCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          237 FVDAVHAGAALHC---WPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       237 ~fD~V~~~~vl~h---~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +||+|++..+.++   -.++..+++++.++|||||++++...
T Consensus       129 ~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            8999999554333   35688899999999999999987554

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.57  E-value=1.2e-14  Score=125.41  Aligned_cols=114  Identities=14%  Similarity=0.140  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .....+.+.+...++.+|||||||+|.++..+++.++ .+|+++|+++.+++.|++++...+.   .++.++.+|+ ..+
T Consensus        78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~-~~~  152 (235)
T 1jg1_A           78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGV---KNVHVILGDG-SKG  152 (235)
T ss_dssp             HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCG-GGC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEECCc-ccC
Confidence            3445666677777888999999999999999999874 5999999999999999999887652   5699999997 334


Q ss_pred             CCCC-chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 FASG-FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 ~~~~-~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++++ +||+|++..+++++.      +++.++|||||++++.....
T Consensus       153 ~~~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          153 FPPKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             CGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             CCCCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEecC
Confidence            4443 499999999999885      37889999999999988543

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.56  E-value=7.5e-15  Score=135.36  Aligned_cols=109  Identities=18%  Similarity=0.206  Sum_probs=92.6

Q ss_pred             HHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      .+.+.++ ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++         ..+++++.+|+.+ +++.
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~~  267 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFA-SVPQ  267 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCccc-CCCC
Confidence            3344443 45678999999999999999999988889999999 888877764         2579999999987 6654


Q ss_pred             CchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEecccC
Q 021344          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                        ||+|++.+++||++++.  .+|++++++|||||++++.+....
T Consensus       268 --~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  310 (372)
T 1fp1_D          268 --GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP  310 (372)
T ss_dssp             --EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             --CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence              99999999999999988  999999999999999999876654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.56  E-value=1.5e-14  Score=134.91  Aligned_cols=123  Identities=11%  Similarity=0.025  Sum_probs=96.8

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHH-------HHHHHhcCCCCCCCeEEEE
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-------YDFIKQDNTILTSNLALVR  225 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a-------~~~~~~~~~~~~~~v~~~~  225 (314)
                      ..+..+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+++.+++.|       +++++..+. ...+++++.
T Consensus       229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl-~~~nV~~i~  307 (433)
T 1u2z_A          229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM-RLNNVEFSL  307 (433)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB-CCCCEEEEE
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCC-CCCceEEEE
Confidence            445566677777788999999999999999999975445899999999999988       887776551 026899999


Q ss_pred             ecCCCC--CC--CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          226 ADVCRL--PF--ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       226 ~d~~~l--p~--~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +|....  ++  ..++||+|+++.++ +.+++...|+++.++|||||++++.....
T Consensus       308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~  362 (433)
T 1u2z_A          308 KKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLR  362 (433)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             cCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence            865432  22  24689999987666 45677888999999999999999975443

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.56  E-value=2.2e-14  Score=132.05  Aligned_cols=109  Identities=15%  Similarity=0.220  Sum_probs=91.6

Q ss_pred             HHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          158 AQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       158 l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      +.+.++ ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++         ..+++++.+|+.+ +++++
T Consensus       194 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p~~  262 (368)
T 3reo_A          194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFD-GVPKG  262 (368)
T ss_dssp             HHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCCC
T ss_pred             HHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCC-CCCCC
Confidence            333343 45578999999999999999999998889999999 888877653         2689999999986 66654


Q ss_pred             chhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEecccCC
Q 021344          237 FVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                        |+|++.+++||+++..  ++|++++++|||||++++.+.....
T Consensus       263 --D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  305 (368)
T 3reo_A          263 --DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP  305 (368)
T ss_dssp             --SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred             --CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence              9999999999998875  7899999999999999998876543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.55  E-value=2.2e-14  Score=127.09  Aligned_cols=111  Identities=15%  Similarity=0.184  Sum_probs=93.0

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+  .++.+|||+|||+|.++..+++.+.. +|+|+|+|+.+++.|+++++..+.  ..+++++++|+.+++. ++
T Consensus       118 ~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~--~~~v~~~~~D~~~~~~-~~  191 (278)
T 2frn_A          118 RMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFPG-EN  191 (278)
T ss_dssp             HHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCCC-CS
T ss_pred             HHHHhC--CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCC--CceEEEEECCHHHhcc-cC
Confidence            444443  34789999999999999999999864 799999999999999999988763  3469999999998776 67


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +||+|++...    .+...+++++.++|||||++++.+...
T Consensus       192 ~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          192 IADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             CEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence            8999998533    445688999999999999999988765

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.55  E-value=1.5e-14  Score=126.82  Aligned_cols=116  Identities=14%  Similarity=0.124  Sum_probs=93.8

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---cCCCCCCCeEEEEecCCCC--
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DNTILTSNLALVRADVCRL--  231 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~v~~~~~d~~~l--  231 (314)
                      ++..++...++.+|||+|||+|.++..++++.+..+++|+|+++.+++.|++++..   .+  ...++.++++|+.+.  
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~--l~~~v~~~~~D~~~~~~  104 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA--FSARIEVLEADVTLRAK  104 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT--TGGGEEEEECCTTCCHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC--CcceEEEEeCCHHHHhh
Confidence            44556666677899999999999999999998767999999999999999999876   55  234699999999876  


Q ss_pred             -----CCCCCchhhheecchhcc------------------CCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          232 -----PFASGFVDAVHAGAALHC------------------WPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 -----p~~~~~fD~V~~~~vl~h------------------~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                           ++++++||+|+++-.+..                  ..+...+++.+.++|||||++++..
T Consensus       105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence                 255788999999722211                  1246788999999999999999876

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.55  E-value=7.6e-16  Score=130.19  Aligned_cols=115  Identities=18%  Similarity=0.123  Sum_probs=72.9

Q ss_pred             HHHHHHHhcc-CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          155 FKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       155 ~~~l~~~l~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      .+.+.+.+.. .++.+|||+|||+|.++..+++.++..+++|+|+++.+++.+++++...+    .+++++++|+.+ ++
T Consensus        18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~-~~   92 (215)
T 4dzr_A           18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG----AVVDWAAADGIE-WL   92 (215)
T ss_dssp             HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHHHHH-HH
T ss_pred             HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC----CceEEEEcchHh-hh
Confidence            3455555554 56889999999999999999999777799999999999999999887654    278899999876 55


Q ss_pred             CC-----Cchhhheecchh------ccCCCH--------------------HHHHHHHHhhcccCcEEEEEe
Q 021344          234 AS-----GFVDAVHAGAAL------HCWPSP--------------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 ~~-----~~fD~V~~~~vl------~h~~d~--------------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++     ++||+|+++..+      +|+...                    ..+++++.++|||||++++..
T Consensus        93 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  164 (215)
T 4dzr_A           93 IERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE  164 (215)
T ss_dssp             HHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred             hhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            55     899999995433      332221                    678899999999999944444

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.55  E-value=3.9e-14  Score=130.18  Aligned_cols=110  Identities=20%  Similarity=0.220  Sum_probs=92.4

Q ss_pred             HHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      .+.+.++ ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++         ..+++++.+|+.+ |++.
T Consensus       191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~~p~  259 (364)
T 3p9c_A          191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFK-EVPS  259 (364)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC
T ss_pred             HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCC-CCCC
Confidence            3444444 55678999999999999999999988889999999 888776653         2689999999987 7765


Q ss_pred             CchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEecccCC
Q 021344          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      +  |+|++.+++||+++..  ++|++++++|||||++++.+.....
T Consensus       260 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  303 (364)
T 3p9c_A          260 G--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV  303 (364)
T ss_dssp             C--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred             C--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            4  9999999999998764  8899999999999999998876543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.55  E-value=1.5e-14  Score=123.87  Aligned_cols=107  Identities=14%  Similarity=0.144  Sum_probs=88.1

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCC-CCeEEEEecCCCC-C-CCCCchhhh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRL-P-FASGFVDAV  241 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-~~v~~~~~d~~~l-p-~~~~~fD~V  241 (314)
                      ++.+|||||||+|..+..+++.. ++.+|+++|+++.+++.|+++++..+  .. .+++++.+|+.+. + +.+++||+|
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~~gda~~~l~~~~~~~fD~V  133 (221)
T 3dr5_A           56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFLLSRPLDVMSRLANDSYQLV  133 (221)
T ss_dssp             TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred             CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence            34499999999999999999864 36799999999999999999999876  33 5899999998653 2 336789999


Q ss_pred             eecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++....   .+...+++++.++|||||++++.....
T Consensus       134 ~~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~~~  166 (221)
T 3dr5_A          134 FGQVSP---MDLKALVDAAWPLLRRGGALVLADALL  166 (221)
T ss_dssp             EECCCT---TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred             EEcCcH---HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            987543   456778999999999999999966554

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.55  E-value=2e-14  Score=125.67  Aligned_cols=118  Identities=18%  Similarity=0.084  Sum_probs=90.7

Q ss_pred             HHHHHhcc-CCCCeEEEEcCcc---cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          157 MAQEYFKS-AQGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       157 ~l~~~l~~-~~~~~iLDiGcG~---G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .+..++.. ....+|||||||+   |.....+....+..+|+++|.|+.|++.|++++...+   ..++.++++|+.+.+
T Consensus        68 rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~---~~~~~~v~aD~~~~~  144 (277)
T 3giw_A           68 RAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP---EGRTAYVEADMLDPA  144 (277)
T ss_dssp             HHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS---SSEEEEEECCTTCHH
T ss_pred             HHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC---CCcEEEEEecccChh
Confidence            33444443 2346899999997   3444444445677899999999999999999886532   257999999998752


Q ss_pred             ------CCCCchh-----hheecchhccCCC---HHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 ------FASGFVD-----AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 ------~~~~~fD-----~V~~~~vl~h~~d---~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                            ...+.||     .|+++.+|||+++   +..+++++.+.|+|||+|++.+...
T Consensus       145 ~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          145 SILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             HHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             hhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence                  1135566     4889999999998   5789999999999999999998664

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.55  E-value=4e-14  Score=121.11  Aligned_cols=114  Identities=23%  Similarity=0.311  Sum_probs=91.7

Q ss_pred             HHHHHhc--cCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCCCeEEEEecCCCC
Q 021344          157 MAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRL  231 (314)
Q Consensus       157 ~l~~~l~--~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~--~~~~~v~~~~~d~~~l  231 (314)
                      .+.+.+.  ..++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.+++++...+.  ....++.++.+|+...
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  145 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  145 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence            3444443  557889999999999999999987 4446999999999999999998876430  0025899999998766


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +..+++||+|++..+++++      ++++.++|||||++++....
T Consensus       146 ~~~~~~fD~i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          146 YAEEAPYDAIHVGAAAPVV------PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             CGGGCCEEEEEECSBBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred             cccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEec
Confidence            5556789999999988876      46889999999999998754

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.54  E-value=2.3e-14  Score=130.94  Aligned_cols=114  Identities=19%  Similarity=0.281  Sum_probs=95.1

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..+  ...+++++.+|+.+++++ 
T Consensus        40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~~~-  114 (348)
T 2y1w_A           40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSLP-  114 (348)
T ss_dssp             HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-
T ss_pred             HHHHhccccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHcC--CCCcEEEEEcchhhCCCC-
Confidence            455556666678899999999999999999875 45999999996 8899999888776  346899999999988765 


Q ss_pred             CchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEe
Q 021344          236 GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++||+|++..+++|+.+  ....+.++.++|||||++++..
T Consensus       115 ~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          115 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            57999999988888754  4578889999999999998654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.54  E-value=5.6e-15  Score=126.83  Aligned_cols=104  Identities=16%  Similarity=0.194  Sum_probs=78.6

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCC-HHHHHHH---HHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS-ENMLRQC---YDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s-~~~~~~a---~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~  240 (314)
                      .++.+|||||||+|.++..+++..+..+|+|+|+| +.+++.|   +++....+   ..++.++.+|+..+|.  ..||+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~---~~~v~~~~~d~~~l~~--~~~d~   97 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG---LSNVVFVIAAAESLPF--ELKNI   97 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC---CSSEEEECCBTTBCCG--GGTTC
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEcCHHHhhh--hccCe
Confidence            35789999999999999999977667799999999 6676666   66665554   2589999999998863  23455


Q ss_pred             heecchhc-------c-CCCHHHHHHHHHhhcccCcEEEEE
Q 021344          241 VHAGAALH-------C-WPSPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       241 V~~~~vl~-------h-~~d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      |.+..+..       | ..++..+++++.++|||||++++.
T Consensus        98 v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~  138 (225)
T 3p2e_A           98 ADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV  138 (225)
T ss_dssp             EEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred             EEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence            54443322       1 123457899999999999999983

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.54  E-value=7.4e-14  Score=120.92  Aligned_cols=115  Identities=13%  Similarity=0.128  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ......+...+...++.+|||+|||+|.++..+++.+  .+++++|+++.+++.|+++....+  ...++.++.+|+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~  152 (248)
T 2yvl_A           77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA--GEVWTFEAVEEFYKTAQKNLKKFN--LGKNVKFFNVDFKDA  152 (248)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHHHHTT--CCTTEEEECSCTTTS
T ss_pred             chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHcC--CCCcEEEEEcChhhc
Confidence            3444577777777788999999999999999999884  499999999999999999988765  236899999999875


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ...+++||+|++     +.+++..+++++.++|||||++++..+
T Consensus       153 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          153 EVPEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             CCCTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             ccCCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            435678999997     456888999999999999999999884

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.53  E-value=4.2e-14  Score=120.72  Aligned_cols=121  Identities=16%  Similarity=0.128  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ......+...+...++.+|||||||+|.++..+++..+ ..+++++|+++.+++.|++++...+  ...+++++.+|+.+
T Consensus        44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~  121 (223)
T 3duw_A           44 PTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN--LNDRVEVRTGLALD  121 (223)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHH
Confidence            44445555555556788999999999999999999855 5699999999999999999998876  34579999999854


Q ss_pred             C-C-CC---CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 L-P-FA---SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 l-p-~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      . + +.   .++||+|++.....   +...+++++.++|||||++++.....
T Consensus       122 ~~~~~~~~~~~~fD~v~~d~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          122 SLQQIENEKYEPFDFIFIDADKQ---NNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             HHHHHHHTTCCCCSEEEECSCGG---GHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             HHHHHHhcCCCCcCEEEEcCCcH---HHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            3 1 11   15799999876533   45688999999999999999876554

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.53  E-value=2.1e-14  Score=121.57  Aligned_cols=110  Identities=17%  Similarity=0.207  Sum_probs=89.6

Q ss_pred             HhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-CCCCCch
Q 021344          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFV  238 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p~~~~~f  238 (314)
                      .+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+  ...+++++.+|+.+. +..++ |
T Consensus        51 l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~-f  127 (210)
T 3c3p_A           51 LARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG--LIDRVELQVGDPLGIAAGQRD-I  127 (210)
T ss_dssp             HHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS--GGGGEEEEESCHHHHHTTCCS-E
T ss_pred             HHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCceEEEEEecHHHHhccCCC-C
Confidence            33344678999999999999999998754 5699999999999999999988765  235799999998653 44456 9


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      |+|++...   ..+...+++++.++|||||++++.+..
T Consensus       128 D~v~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~  162 (210)
T 3c3p_A          128 DILFMDCD---VFNGADVLERMNRCLAKNALLIAVNAL  162 (210)
T ss_dssp             EEEEEETT---TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred             CEEEEcCC---hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence            99998743   456789999999999999999986643

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.53  E-value=2.2e-14  Score=129.23  Aligned_cols=123  Identities=16%  Similarity=0.152  Sum_probs=96.9

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .....+...+...++.+|||+|||+|..+..+++... ..+|+|+|+++.+++.++++++..+.   .++.++++|+..+
T Consensus       105 ~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~  181 (315)
T 1ixk_A          105 ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHI  181 (315)
T ss_dssp             HHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGG
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CeEEEEECChhhc
Confidence            3344555667778889999999999999999998742 46999999999999999999988763   5799999999887


Q ss_pred             CCCCCchhhheec------chhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccC
Q 021344          232 PFASGFVDAVHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       232 p~~~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +..+++||+|++.      .++.+.++.                ..+|+++.++|||||++++++.+..
T Consensus       182 ~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~  250 (315)
T 1ixk_A          182 GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  250 (315)
T ss_dssp             GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             ccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence            6556789999973      334443321                4789999999999999999886543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.53  E-value=8.1e-14  Score=126.63  Aligned_cols=119  Identities=18%  Similarity=0.229  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcC-------CC-CCCCeE
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDN-------TI-LTSNLA  222 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~-------~~-~~~~v~  222 (314)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|++++...+       .. ...+++
T Consensus        91 ~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~  170 (336)
T 2b25_A           91 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  170 (336)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence            344556677777788999999999999999999987 665799999999999999999887521       00 125899


Q ss_pred             EEEecCCCC--CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          223 LVRADVCRL--PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       223 ~~~~d~~~l--p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++.+|+.+.  ++++++||+|++.     .+++..+++++.++|||||++++...
T Consensus       171 ~~~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          171 FIHKDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             EEESCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             EEECChHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999999876  4566789999984     34566689999999999999998774

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.53  E-value=4.3e-14  Score=120.97  Aligned_cols=114  Identities=19%  Similarity=0.292  Sum_probs=92.1

Q ss_pred             HHHHHh--ccCCCCeEEEEcCcccHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCCCeEEEEec
Q 021344          157 MAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRAD  227 (314)
Q Consensus       157 ~l~~~l--~~~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~~~~~~a~~~~~~~~~--~~~~~v~~~~~d  227 (314)
                      .+.+.+  ...++.+|||||||+|.++..+++..     +..+|+++|+++.+++.|+++++..+.  ....++.++.+|
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence            344444  35568899999999999999999875     356999999999999999999877540  002689999999


Q ss_pred             CCCCC----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          228 VCRLP----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       228 ~~~lp----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +....    ...++||+|++..+++|+      ++++.++|||||++++....
T Consensus       149 ~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          149 IYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             GGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred             hHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence            97754    456789999999998876      47889999999999998753

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.53  E-value=8e-15  Score=142.38  Aligned_cols=107  Identities=16%  Similarity=0.234  Sum_probs=91.1

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhhee
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~~  243 (314)
                      .+.+|||||||.|.++..|++.|.  +|+|||+++.+++.|+....+.+   ..++++.+++++++  ++.+++||+|++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~v~~  140 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEENP---DFAAEFRVGRIEEVIAALEEGEFDLAIG  140 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTST---TSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhcC---CCceEEEECCHHHHhhhccCCCccEEEE
Confidence            467999999999999999999987  99999999999999999888765   25899999999887  456789999999


Q ss_pred             cchhccCCCHHH--HHHHHHhhcccCcEEEEEeccc
Q 021344          244 GAALHCWPSPSN--AVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       244 ~~vl~h~~d~~~--~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ..+|||++|+..  .+..+.+.|+++|..++.....
T Consensus       141 ~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~  176 (569)
T 4azs_A          141 LSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV  176 (569)
T ss_dssp             ESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred             CcchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence            999999998863  3556777788888777666544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.53  E-value=1.2e-14  Score=126.51  Aligned_cols=118  Identities=19%  Similarity=0.107  Sum_probs=88.4

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhc---CCCCCCC-----------
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQD---NTILTSN-----------  220 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~-----------  220 (314)
                      .+.+.+...++.+|||+|||+|.++..+++.  .+..+|+|+|+|+.+++.|++++...   +.  ..+           
T Consensus        42 ~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~  119 (250)
T 1o9g_A           42 RALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL--TARELERREQSERF  119 (250)
T ss_dssp             HHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH--HHHHHHHHHHHHHH
T ss_pred             HHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc--cccchhhhhhhhhc
Confidence            3333443345679999999999999999887  44458999999999999999877653   21  011           


Q ss_pred             --------------eE-------------EEEecCCCCCC-----CCCchhhheecchhccCCC---------HHHHHHH
Q 021344          221 --------------LA-------------LVRADVCRLPF-----ASGFVDAVHAGAALHCWPS---------PSNAVAE  259 (314)
Q Consensus       221 --------------v~-------------~~~~d~~~lp~-----~~~~fD~V~~~~vl~h~~d---------~~~~l~~  259 (314)
                                    ++             ++++|+.+...     ..++||+|+++..+.+..+         ...++++
T Consensus       120 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~  199 (250)
T 1o9g_A          120 GKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRS  199 (250)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHH
Confidence                          56             99999877321     3448999999876665543         3489999


Q ss_pred             HHhhcccCcEEEEEecc
Q 021344          260 ISRILRSGGVFVGTTFL  276 (314)
Q Consensus       260 i~r~LkpGG~l~i~~~~  276 (314)
                      +.++|||||++++....
T Consensus       200 ~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          200 LASALPAHAVIAVTDRS  216 (250)
T ss_dssp             HHHHSCTTCEEEEEESS
T ss_pred             HHHhcCCCcEEEEeCcc
Confidence            99999999999995543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.52  E-value=3.1e-14  Score=116.24  Aligned_cols=100  Identities=21%  Similarity=0.251  Sum_probs=86.0

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--------CC
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA  234 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--------~~  234 (314)
                      ..++.+|||+|||+|.++..+++. ++..+++|+|+++ +++             ..++.++.+|+.+.+        ++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------------IVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------------cCcEEEEEcccccchhhhhhhccCC
Confidence            456789999999999999999988 5557999999998 542             157899999998876        66


Q ss_pred             CCchhhheecchhccCCCH-----------HHHHHHHHhhcccCcEEEEEeccc
Q 021344          235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +++||+|++..++++..++           ..+++++.++|||||.+++.++..
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            7899999999999888877           789999999999999999988654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.52  E-value=1.4e-14  Score=125.17  Aligned_cols=108  Identities=14%  Similarity=0.098  Sum_probs=86.2

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-  231 (314)
                      .+...+...++.+|||||||+|..+..+++.    ++..+|+|+|+++.+++.|+.        ...+++++++|+.+. 
T Consensus        72 ~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~--------~~~~v~~~~gD~~~~~  143 (236)
T 2bm8_A           72 VYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSDLT  143 (236)
T ss_dssp             HHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSCSG
T ss_pred             HHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc--------cCCceEEEECcchhHH
Confidence            3444444445689999999999999999987    556799999999999888872        236899999999874 


Q ss_pred             --CCCC-CchhhheecchhccCCCHHHHHHHHHh-hcccCcEEEEEec
Q 021344          232 --PFAS-GFVDAVHAGAALHCWPSPSNAVAEISR-ILRSGGVFVGTTF  275 (314)
Q Consensus       232 --p~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r-~LkpGG~l~i~~~  275 (314)
                        +..+ .+||+|++...  | .+...++.++.+ +|||||++++.+.
T Consensus       144 ~l~~~~~~~fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          144 TFEHLREMAHPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             GGGGGSSSCSSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             HHHhhccCCCCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence              5433 37999998665  4 377889999997 9999999999764

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.52  E-value=1.9e-13  Score=125.09  Aligned_cols=116  Identities=14%  Similarity=0.199  Sum_probs=98.1

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.++.....+|||||||+|.++..++++.|+.+++..|. +.+++.|++.+...+   ..+++++.+|+.+.|.+  
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~---~~rv~~~~gD~~~~~~~--  243 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE---EEQIDFQEGDFFKDPLP--  243 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCCC--
T ss_pred             HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc---cCceeeecCccccCCCC--
Confidence            444455566678999999999999999999999999999997 889999998776543   47899999999876654  


Q ss_pred             chhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEecccC
Q 021344          237 FVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .+|+|++.++||+++|+.  ++|++++++|+|||+++|.+....
T Consensus       244 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~  287 (353)
T 4a6d_A          244 EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLD  287 (353)
T ss_dssp             CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred             CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence            479999999999999884  789999999999999999887654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.52  E-value=7.1e-14  Score=120.30  Aligned_cols=107  Identities=22%  Similarity=0.274  Sum_probs=85.3

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---CCCCCCc
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGF  237 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---lp~~~~~  237 (314)
                      +...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+.+..+..     .++.++.+|+.+   +++.+++
T Consensus        73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~~  147 (233)
T 2ipx_A           73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIAM  147 (233)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCCC
T ss_pred             ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCCc
Confidence            44567889999999999999999987 34569999999999888777766543     579999999987   4555778


Q ss_pred             hhhheecchhccCCCH-HHHHHHHHhhcccCcEEEEEecc
Q 021344          238 VDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~-~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ||+|++...   .++. ..++.++.++|||||++++....
T Consensus       148 ~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          148 VDVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             EEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EEEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            999998544   2222 45688999999999999996543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.52  E-value=2.9e-14  Score=130.38  Aligned_cols=102  Identities=17%  Similarity=0.199  Sum_probs=89.2

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++         ..+++++.+|+.+ +++  .||+|++
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p--~~D~v~~  252 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG---------SNNLTYVGGDMFT-SIP--NADAVLL  252 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------BTTEEEEECCTTT-CCC--CCSEEEE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc---------CCCcEEEeccccC-CCC--CccEEEe
Confidence            34568999999999999999999988789999999 999887764         1469999999976 554  3999999


Q ss_pred             cchhccCCCHH--HHHHHHHhhccc---CcEEEEEecccC
Q 021344          244 GAALHCWPSPS--NAVAEISRILRS---GGVFVGTTFLRY  278 (314)
Q Consensus       244 ~~vl~h~~d~~--~~l~~i~r~Lkp---GG~l~i~~~~~~  278 (314)
                      .+++||++|+.  .+|++++++|||   ||++++.++...
T Consensus       253 ~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  292 (352)
T 1fp2_A          253 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID  292 (352)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             ehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence            99999999988  999999999999   999999887654

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.52  E-value=2.1e-14  Score=122.73  Aligned_cols=120  Identities=15%  Similarity=0.162  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .....+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.++++++..+  ...+++++.+|+.+.
T Consensus        51 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~  128 (225)
T 3tr6_A           51 EQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG--LSDKIGLRLSPAKDT  128 (225)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeCCHHHH
Confidence            3344555555555678999999999999999998754 5699999999999999999998876  345699999998543


Q ss_pred             -C-CCC----CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          232 -P-FAS----GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       232 -p-~~~----~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       + +..    ++||+|++...   ..+...+++++.++|||||++++.....
T Consensus       129 ~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~  177 (225)
T 3tr6_A          129 LAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR  177 (225)
T ss_dssp             HHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             HHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence             2 111    78999997554   2346789999999999999999977654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.51  E-value=1.3e-13  Score=122.29  Aligned_cols=121  Identities=16%  Similarity=0.091  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHH-----HhcCCC--CCCCeEEE
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF-SENMLRQCYDFI-----KQDNTI--LTSNLALV  224 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~-s~~~~~~a~~~~-----~~~~~~--~~~~v~~~  224 (314)
                      ...+.+.......++.+|||+|||+|.++..+++.+ ..+|+|+|+ ++.+++.+++++     +..+..  ...++.+.
T Consensus        66 ~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~  144 (281)
T 3bzb_A           66 ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV  144 (281)
T ss_dssp             HHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred             HHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence            344555555555567899999999999999998876 348999999 899999999998     433310  00368888


Q ss_pred             EecCCCCC--C----CCCchhhheecchhccCCCHHHHHHHHHhhcc---c--CcEEEEEe
Q 021344          225 RADVCRLP--F----ASGFVDAVHAGAALHCWPSPSNAVAEISRILR---S--GGVFVGTT  274 (314)
Q Consensus       225 ~~d~~~lp--~----~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lk---p--GG~l~i~~  274 (314)
                      ..|..+..  +    .+++||+|++..+++|.++...+++.+.++||   |  ||++++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          145 PYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             ECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             EecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence            76654421  1    35789999999999999999999999999999   9  99887754

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.51  E-value=9.7e-14  Score=127.06  Aligned_cols=124  Identities=20%  Similarity=0.080  Sum_probs=101.7

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      +........+.......++.+|||+|||+|.++..++..+ +..+++|+|+++.+++.|+++++..+.   .+++++++|
T Consensus       186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~---~~i~~~~~D  262 (354)
T 3tma_A          186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL---SWIRFLRAD  262 (354)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC---TTCEEEECC
T ss_pred             CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC---CceEEEeCC
Confidence            3345566677777777788899999999999999999976 566999999999999999999998873   389999999


Q ss_pred             CCCCCCCCCchhhheecchhccCC--------CHHHHHHHHHhhcccCcEEEEEec
Q 021344          228 VCRLPFASGFVDAVHAGAALHCWP--------SPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~--------d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +.+++.+.+.||+|+++-......        ....+++++.++|||||.+++.+.
T Consensus       263 ~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          263 ARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             GGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             hhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999887777899999954332211        125789999999999999999984

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.51  E-value=3.7e-14  Score=127.16  Aligned_cols=111  Identities=14%  Similarity=0.160  Sum_probs=85.5

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCCeEEEEecCCCCCC--CCCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPF--ASGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~~d~~~lp~--~~~~fD~V  241 (314)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.+++++... ......+++++.+|+...+.  .+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            4568999999999999999998765669999999999999999976321 00023689999999876543  36789999


Q ss_pred             eecchhccCCCH----HHHHHHHHhhcccCcEEEEEec
Q 021344          242 HAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       242 ~~~~vl~h~~d~----~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++.....+.++.    ..+++++.++|||||++++...
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  211 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE  211 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            997655443332    5889999999999999999863

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.51  E-value=3.9e-14  Score=120.15  Aligned_cols=90  Identities=17%  Similarity=0.292  Sum_probs=78.7

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ..++.+|||||||+|.++..++     .+++|+|+++.                  ++.++.+|+.++++++++||+|++
T Consensus        65 ~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~~~~~~fD~v~~  121 (215)
T 2zfu_A           65 RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVPLEDESVDVAVF  121 (215)
T ss_dssp             SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred             cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCCCCCCCEeEEEE
Confidence            3467899999999999988773     38999999875                  356789999998888889999999


Q ss_pred             cchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ..++|| .++..+++++.++|||||++++.++..
T Consensus       122 ~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~  154 (215)
T 2zfu_A          122 CLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS  154 (215)
T ss_dssp             ESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             ehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            999975 899999999999999999999988654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.50  E-value=2.7e-14  Score=126.19  Aligned_cols=123  Identities=14%  Similarity=0.159  Sum_probs=96.6

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC--
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--  233 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~--  233 (314)
                      .+...+...++.+|||+|||+|..+..+++...+ .+|+++|+++.+++.++++++..+.   .++.++.+|+..++.  
T Consensus        74 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           74 IPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV---LNTIIINADMRKYKDYL  150 (274)
T ss_dssp             HHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCHHHHHHHH
T ss_pred             HHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC---CcEEEEeCChHhcchhh
Confidence            3445666778899999999999999999986433 6999999999999999999988763   589999999877654  


Q ss_pred             --CCCchhhheec------chhc------------cCCCHHHHHHHHHhhcccCcEEEEEecccCCCCC
Q 021344          234 --ASGFVDAVHAG------AALH------------CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST  282 (314)
Q Consensus       234 --~~~~fD~V~~~------~vl~------------h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~  282 (314)
                        ..++||+|++.      .++.            +......+++++.++|||||++++++.+..+..+
T Consensus       151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~en  219 (274)
T 3ajd_A          151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEEN  219 (274)
T ss_dssp             HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSS
T ss_pred             hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHh
Confidence              25689999986      2222            2245578999999999999999998876554433

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.50  E-value=6.3e-15  Score=127.88  Aligned_cols=121  Identities=9%  Similarity=0.076  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ......+...+...++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++++..+  ...+++++.+|+.+
T Consensus        46 ~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~  123 (242)
T 3r3h_A           46 PEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK--QEHKIKLRLGPALD  123 (242)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT--CTTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHH
Confidence            34445555555555678999999999999999998753 6699999999999999999998876  34689999999865


Q ss_pred             C-CCC-----CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 L-PFA-----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 l-p~~-----~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      . +..     +++||+|++...   ..+...+++++.++|||||++++.....
T Consensus       124 ~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~  173 (242)
T 3r3h_A          124 TLHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW  173 (242)
T ss_dssp             HHHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred             HHHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence            3 221     478999998765   2345678999999999999999977654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=8.4e-14  Score=122.88  Aligned_cols=107  Identities=20%  Similarity=0.203  Sum_probs=92.0

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ..++.+|||+|||+|.++..+++.++..+|+|+|+++.+++.|+++++..++   .++.++.+|+.+.+. .++||+|++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l---~~~~~~~~d~~~~~~-~~~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL---NNVIPILADNRDVEL-KDVADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC---SSEEEEESCGGGCCC-TTCEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEECChHHcCc-cCCceEEEE
Confidence            4567899999999999999999986567999999999999999999988763   578999999987743 568999998


Q ss_pred             cchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ....    +...++.++.+.|||||++++......
T Consensus       193 d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          193 GYVH----KTHKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             CCCS----SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             CCcc----cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence            7553    667889999999999999999887653

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.50  E-value=1.4e-13  Score=122.13  Aligned_cols=117  Identities=18%  Similarity=0.205  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      +..++.+.+.+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++++..+.  ..+++++++|+.. 
T Consensus       109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l--~~~v~~~~~D~~~-  184 (284)
T 1nv8_A          109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEFLE-  184 (284)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESSTTG-
T ss_pred             HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECcchh-
Confidence            344556666655446779999999999999999998 667999999999999999999988762  3469999999976 


Q ss_pred             CCCCCch---hhheec------------chhccCC--------CHHHHHHHHH-hhcccCcEEEEEe
Q 021344          232 PFASGFV---DAVHAG------------AALHCWP--------SPSNAVAEIS-RILRSGGVFVGTT  274 (314)
Q Consensus       232 p~~~~~f---D~V~~~------------~vl~h~~--------d~~~~l~~i~-r~LkpGG~l~i~~  274 (314)
                      +++ ++|   |+|+++            .+. |-+        |...+++++. +.|+|||++++..
T Consensus       185 ~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          185 PFK-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             GGG-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             hcc-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence            332 579   999996            222 322        2237899999 9999999999865

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.50  E-value=5.3e-14  Score=122.44  Aligned_cols=120  Identities=13%  Similarity=0.101  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .....+...+...++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|+++++..+  ...+++++.+|+.+.
T Consensus        66 ~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~  143 (247)
T 1sui_A           66 DEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPV  143 (247)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHH
Confidence            3334444444555678999999999999999998854 5699999999999999999998876  345899999998653


Q ss_pred             -CC------CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          232 -PF------ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       232 -p~------~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       +.      .+++||+|++...   ..+...+++++.++|||||++++.....
T Consensus       144 l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~  193 (247)
T 1sui_A          144 LDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_dssp             HHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred             HHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence             32      1578999998654   3467889999999999999999876443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.49  E-value=3.3e-13  Score=115.52  Aligned_cols=104  Identities=16%  Similarity=0.229  Sum_probs=83.6

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCch
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV  238 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~f  238 (314)
                      ...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.++++++..     .++.++.+|+....   ...++|
T Consensus        70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~  144 (227)
T 1g8a_A           70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVPKV  144 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCCCE
T ss_pred             CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-----CCCEEEEccCCCcchhhcccCCc
Confidence            3567889999999999999999987 44569999999999999998877642     58999999998732   123589


Q ss_pred             hhheecchhccCCCH-HHHHHHHHhhcccCcEEEEEe
Q 021344          239 DAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       239 D~V~~~~vl~h~~d~-~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+|++...   .++. ..+++++.++|||||++++..
T Consensus       145 D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          145 DVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99997654   2333 355999999999999999973

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.49  E-value=8.8e-14  Score=132.05  Aligned_cols=113  Identities=19%  Similarity=0.291  Sum_probs=93.5

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..+  ...+++++.+|+.+++++ 
T Consensus       148 ~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~s~-~l~~A~~~~~~~g--l~~~v~~~~~d~~~~~~~-  222 (480)
T 3b3j_A          148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSLP-  222 (480)
T ss_dssp             HHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEECHH-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-
T ss_pred             HHHHHhhhhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEcHH-HHHHHHHHHHHcC--CCCcEEEEECchhhCccC-
Confidence            345555555678899999999999999998864 45999999998 9999999988876  346899999999887764 


Q ss_pred             CchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEE
Q 021344          236 GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~  273 (314)
                      ++||+|++..+++|+.+.  ...+.++.++|||||++++.
T Consensus       223 ~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            589999998888887654  46778889999999999853

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.49  E-value=6e-14  Score=120.24  Aligned_cols=113  Identities=24%  Similarity=0.376  Sum_probs=89.2

Q ss_pred             HHHHHh--ccCCCCeEEEEcCcccHHHHHHHHhCC------CCeEEEEeCCHHHHHHHHHHHHhcCC--CCCCCeEEEEe
Q 021344          157 MAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSGT------YSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRA  226 (314)
Q Consensus       157 ~l~~~l--~~~~~~~iLDiGcG~G~~~~~l~~~~~------~~~v~giD~s~~~~~~a~~~~~~~~~--~~~~~v~~~~~  226 (314)
                      .+.+.+  ...++.+|||||||+|.++..+++...      ..+|+++|+++.+++.+++++...+.  ....++.++.+
T Consensus        73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  152 (227)
T 1r18_A           73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  152 (227)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence            444455  355688999999999999999988532      24899999999999999998765320  00257999999


Q ss_pred             cCCCCCCCC-CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          227 DVCRLPFAS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       227 d~~~lp~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      |+.. ++++ ++||+|++..+++|+.      +++.+.|||||++++....
T Consensus       153 d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          153 DGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred             Cccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence            9876 4444 7899999999999875      7889999999999998743

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.49  E-value=1.4e-13  Score=118.88  Aligned_cols=121  Identities=18%  Similarity=0.209  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ......+...+...++.+|||||||+|.++..+++..+ ..+++++|+++.+++.|+++++..+.  ..++.++.+|+.+
T Consensus        46 ~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~  123 (239)
T 2hnk_A           46 PEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL--ENKIFLKLGSALE  123 (239)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHHH
Confidence            34455666666666788999999999999999999854 56999999999999999999887662  3459999999754


Q ss_pred             C-C--------------CCC--CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 L-P--------------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 l-p--------------~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      . +              |++  ++||+|++....+   +...+++++.++|||||++++.+...
T Consensus       124 ~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~  184 (239)
T 2hnk_A          124 TLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE---NYPNYYPLILKLLKPGGLLIADNVLW  184 (239)
T ss_dssp             HHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG---GHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             HHHHHHhhcccccccccccCCCCCcCEEEEeCCHH---HHHHHHHHHHHHcCCCeEEEEEcccc
Confidence            2 2              122  7899999876544   34688999999999999999977443

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.48  E-value=3.6e-13  Score=115.68  Aligned_cols=112  Identities=14%  Similarity=0.115  Sum_probs=83.2

Q ss_pred             HHHHHHHhc---cCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          155 FKMAQEYFK---SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       155 ~~~l~~~l~---~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      ...+...+.   ..++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++...+..+..     .++.++.+|+..
T Consensus        62 a~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-----~nv~~i~~Da~~  136 (232)
T 3id6_C           62 AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-----PNIFPLLADARF  136 (232)
T ss_dssp             HHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-----TTEEEEECCTTC
T ss_pred             HHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCeEEEEccccc
Confidence            334444443   678999999999999999999876 55669999999999876555444332     689999999976


Q ss_pred             CC---CCCCchhhheecchhccCCCHHHHH-HHHHhhcccCcEEEEEe
Q 021344          231 LP---FASGFVDAVHAGAALHCWPSPSNAV-AEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 lp---~~~~~fD~V~~~~vl~h~~d~~~~l-~~i~r~LkpGG~l~i~~  274 (314)
                      ..   ...++||+|++....   ++....+ ..+.++|||||++++..
T Consensus       137 ~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          137 PQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             GGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence            42   124689999987543   4555544 55666999999999874

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.48  E-value=5.1e-14  Score=127.69  Aligned_cols=120  Identities=10%  Similarity=0.044  Sum_probs=92.5

Q ss_pred             HHHHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC-CeEEEEecCCCC
Q 021344          154 EFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRL  231 (314)
Q Consensus       154 ~~~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~-~v~~~~~d~~~l  231 (314)
                      ..+.+.+.+. ..++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.|+++++..++  .. +++++++|+.+.
T Consensus       140 ~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl--~~~~v~~i~~D~~~~  215 (332)
T 2igt_A          140 HWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGL--EQAPIRWICEDAMKF  215 (332)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTC--TTSCEEEECSCHHHH
T ss_pred             HHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC--CccceEEEECcHHHH
Confidence            3344555554 34577999999999999999999876  999999999999999999988763  22 599999998764


Q ss_pred             CC----CCCchhhheecc----------hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          232 PF----ASGFVDAVHAGA----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       232 p~----~~~~fD~V~~~~----------vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ..    ..++||+|++.-          ++++..+...+++++.++|||||++++.....
T Consensus       216 l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          216 IQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             HHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            31    146899999832          22334456789999999999999987766543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.48  E-value=1.6e-13  Score=125.87  Aligned_cols=103  Identities=22%  Similarity=0.368  Sum_probs=88.5

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee-
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-  243 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~-  243 (314)
                      .++++|||||||+|.++..+++.|. .+|+|+|.|+ +++.|++.++.++  ...+|+++.+|++++.++ ++||+|++ 
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~--~~~~i~~i~~~~~~~~lp-e~~DvivsE  156 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNG--LEDRVHVLPGPVETVELP-EQVDAIVSE  156 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-SCEEEEECC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcC--CCceEEEEeeeeeeecCC-ccccEEEee
Confidence            3688999999999999999998874 4899999996 7899999998887  467899999999988775 67999998 


Q ss_pred             --cchhccCCCHHHHHHHHHhhcccCcEEEE
Q 021344          244 --GAALHCWPSPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       244 --~~vl~h~~d~~~~l~~i~r~LkpGG~l~i  272 (314)
                        ...+.+-.....++....+.|||||.++-
T Consensus       157 ~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          157 WMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccccccchhhhHHHHHHhhCCCCceECC
Confidence              45566666788999999999999999764

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.47  E-value=6.9e-14  Score=117.29  Aligned_cols=99  Identities=12%  Similarity=0.288  Sum_probs=79.5

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---------
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGT--YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---------  232 (314)
                      ..++.+|||+|||+|.++..+++..+  ..+|+|+|+++..              ...++.++++|+.+.+         
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------------~~~~v~~~~~d~~~~~~~~~~~~~~   85 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------------PIPNVYFIQGEIGKDNMNNIKNINY   85 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------------CCTTCEEEECCTTTTSSCCC-----
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------------CCCCceEEEccccchhhhhhccccc
Confidence            35678999999999999999998865  4699999999831              1257899999998876         


Q ss_pred             ----------------CCCCchhhheecchhccCC----CHH-------HHHHHHHhhcccCcEEEEEecc
Q 021344          233 ----------------FASGFVDAVHAGAALHCWP----SPS-------NAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 ----------------~~~~~fD~V~~~~vl~h~~----d~~-------~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                                      +++++||+|++..++++..    +..       .+++++.++|||||.+++..+.
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence                            5667899999988777642    221       3789999999999999997754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.47  E-value=7.3e-14  Score=122.01  Aligned_cols=103  Identities=18%  Similarity=0.227  Sum_probs=87.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.+++++...+.   . +++..+|+.. ++++++||+|+++
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~---~-v~~~~~d~~~-~~~~~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGV---R-PRFLEGSLEA-ALPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTC---C-CEEEESCHHH-HGGGCCEEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC---c-EEEEECChhh-cCcCCCCCEEEEC
Confidence            4578999999999999999999886  999999999999999999887662   2 8999998865 2446789999997


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ...++   ...+++++.++|||||++++.....
T Consensus       192 ~~~~~---~~~~l~~~~~~LkpgG~lils~~~~  221 (254)
T 2nxc_A          192 LYAEL---HAALAPRYREALVPGGRALLTGILK  221 (254)
T ss_dssp             CCHHH---HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred             CcHHH---HHHHHHHHHHHcCCCCEEEEEeecc
Confidence            66554   4688999999999999999987543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.47  E-value=3.4e-13  Score=115.21  Aligned_cols=129  Identities=12%  Similarity=0.072  Sum_probs=100.1

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+++.  ++.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..+  ...++++..+|..+...
T Consensus        11 RL~~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g--l~~~I~~~~gD~l~~~~   86 (230)
T 3lec_A           11 RLQKVANYVP--KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG--LTSKIDVRLANGLSAFE   86 (230)
T ss_dssp             HHHHHHTTSC--TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCC
T ss_pred             HHHHHHHhCC--CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhccc
Confidence            3445555554  4789999999999999999999876789999999999999999999987  35679999999877654


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHHHhh
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIR  296 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~~~~  296 (314)
                      ++++||+|+..+.--.  -...++.+..+.|+++|+|++....        ....+++|+...
T Consensus        87 ~~~~~D~IviaGmGg~--lI~~IL~~~~~~l~~~~~lIlqp~~--------~~~~lr~~L~~~  139 (230)
T 3lec_A           87 EADNIDTITICGMGGR--LIADILNNDIDKLQHVKTLVLQPNN--------REDDLRKWLAAN  139 (230)
T ss_dssp             GGGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESS--------CHHHHHHHHHHT
T ss_pred             cccccCEEEEeCCchH--HHHHHHHHHHHHhCcCCEEEEECCC--------ChHHHHHHHHHC
Confidence            4447999886544221  1356788889999999999988732        256666666543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.46  E-value=3.3e-13  Score=127.36  Aligned_cols=123  Identities=18%  Similarity=0.258  Sum_probs=100.7

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .....+...+...++.+|||+|||+|..+..++...++ .+++++|+++.+++.++++++..+.   .++.++.+|+..+
T Consensus       246 ~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~  322 (450)
T 2yxl_A          246 EASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI---KIVKPLVKDARKA  322 (450)
T ss_dssp             HHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCTTCC
T ss_pred             chhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEEEcChhhc
Confidence            33445566677778899999999999999999987544 6999999999999999999988763   5899999999887


Q ss_pred             C--CCCCchhhhee------cchhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccC
Q 021344          232 P--FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       232 p--~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +  +++++||+|++      ..++++.++.                ..+|+++.++|||||++++++.+..
T Consensus       323 ~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          323 PEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             SSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             chhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            6  55578999996      4556665554                5789999999999999999886654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.46  E-value=1.2e-13  Score=118.92  Aligned_cols=119  Identities=13%  Similarity=0.090  Sum_probs=93.2

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC--
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--  230 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~--  230 (314)
                      ....+...+...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|+++++..+  ...+++++.+|+.+  
T Consensus        60 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~l  137 (232)
T 3cbg_A           60 QAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG--VAEKISLRLGPALATL  137 (232)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHH
Confidence            334444444445678999999999999999998754 5699999999999999999988766  23579999999743  


Q ss_pred             --CCCCC--CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 --LPFAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 --lp~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                        ++..+  ++||+|++....   .+...+++++.++|||||++++.....
T Consensus       138 ~~l~~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~~  185 (232)
T 3cbg_A          138 EQLTQGKPLPEFDLIFIDADK---RNYPRYYEIGLNLLRRGGLMVIDNVLW  185 (232)
T ss_dssp             HHHHTSSSCCCEEEEEECSCG---GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred             HHHHhcCCCCCcCEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence              22323  789999987552   356788999999999999999976554

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.46  E-value=9.8e-14  Score=127.19  Aligned_cols=101  Identities=18%  Similarity=0.181  Sum_probs=88.2

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++         ..+++++.+|+.+ +++  +||+|++.
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~v~~~  258 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFK-SIP--SADAVLLK  258 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTT-CCC--CCSEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCC-CCC--CceEEEEc
Confidence            4567999999999999999999988889999999 788776653         2469999999987 665  49999999


Q ss_pred             chhccCCCHH--HHHHHHHhhccc---CcEEEEEecccC
Q 021344          245 AALHCWPSPS--NAVAEISRILRS---GGVFVGTTFLRY  278 (314)
Q Consensus       245 ~vl~h~~d~~--~~l~~i~r~Lkp---GG~l~i~~~~~~  278 (314)
                      +++||++|+.  .+|+++.++|||   ||++++.++...
T Consensus       259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  297 (358)
T 1zg3_A          259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID  297 (358)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred             ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence            9999999987  999999999999   999999887653

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.45  E-value=6.4e-14  Score=124.45  Aligned_cols=114  Identities=17%  Similarity=0.222  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++...+  ...+++++.+|+.++
T Consensus        14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~D~~~~   89 (285)
T 1zq9_A           14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKT   89 (285)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcceecc
Confidence            44566777778777889999999999999999999876  99999999999999999886543  125899999999887


Q ss_pred             CCCCCchhhheec-----------chhccCCCHHHHH----HHH--HhhcccCcEEE
Q 021344          232 PFASGFVDAVHAG-----------AALHCWPSPSNAV----AEI--SRILRSGGVFV  271 (314)
Q Consensus       232 p~~~~~fD~V~~~-----------~vl~h~~d~~~~l----~~i--~r~LkpGG~l~  271 (314)
                      +++  +||+|+++           .+++|.++....+    +++  +++|||||.++
T Consensus        90 ~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           90 DLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             cch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            765  79999985           4566655543211    333  46899999763

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.45  E-value=1.7e-13  Score=117.40  Aligned_cols=120  Identities=15%  Similarity=0.112  Sum_probs=94.4

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .....+.......++.+|||||||+|.++..+++..+ ..+++++|+++.+++.|+++++..+  ...+++++.+|+.+.
T Consensus        56 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~  133 (229)
T 2avd_A           56 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALET  133 (229)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCCeEEEEEcCHHHH
Confidence            3444555555556678999999999999999998754 5699999999999999999998876  346899999998543


Q ss_pred             -C-CCC----CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          232 -P-FAS----GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       232 -p-~~~----~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       + +.+    ++||+|++...   ..+...+++++.++|||||++++.....
T Consensus       134 ~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~  182 (229)
T 2avd_A          134 LDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVLW  182 (229)
T ss_dssp             HHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             HHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence             1 211    68999998654   3456788999999999999999976543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.45  E-value=2.4e-14  Score=117.75  Aligned_cols=92  Identities=17%  Similarity=0.193  Sum_probs=80.3

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---CCCch
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFV  238 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---~~~~f  238 (314)
                      +...++.+|||+|||.                +++|+|+.|++.|+++..       .+++++++|+.++++   ++++|
T Consensus         8 ~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~f   64 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESSF   64 (176)
T ss_dssp             TTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSCE
T ss_pred             cCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCCE
Confidence            3456789999999986                239999999999998742       358999999998887   78899


Q ss_pred             hhheecchhccC-CCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          239 DAVHAGAALHCW-PSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       239 D~V~~~~vl~h~-~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      |+|++..++||+ +++..++++++++|||||++++..+.
T Consensus        65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  103 (176)
T 2ld4_A           65 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPV  103 (176)
T ss_dssp             EEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccc
Confidence            999999999999 99999999999999999999997653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.44  E-value=5.8e-13  Score=114.71  Aligned_cols=129  Identities=11%  Similarity=0.069  Sum_probs=98.4

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+++..  +.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..+  ...++++..+|..+...
T Consensus        11 RL~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~I~v~~gD~l~~~~   86 (244)
T 3gnl_A           11 RLEKVASYITK--NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG--LTEQIDVRKGNGLAVIE   86 (244)
T ss_dssp             HHHHHHTTCCS--SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCC
T ss_pred             HHHHHHHhCCC--CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEecchhhccC
Confidence            34455555553  689999999999999999999876689999999999999999999887  34679999999877554


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHHHhh
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLIR  296 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~~~~  296 (314)
                      ++++||+|+..+.--.  -...++.+..+.|+++|+|++....        ....+++|+...
T Consensus        87 ~~~~~D~IviagmGg~--lI~~IL~~~~~~L~~~~~lIlq~~~--------~~~~lr~~L~~~  139 (244)
T 3gnl_A           87 KKDAIDTIVIAGMGGT--LIRTILEEGAAKLAGVTKLILQPNI--------AAWQLREWSEQN  139 (244)
T ss_dssp             GGGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESS--------CHHHHHHHHHHH
T ss_pred             ccccccEEEEeCCchH--HHHHHHHHHHHHhCCCCEEEEEcCC--------ChHHHHHHHHHC
Confidence            3346999886543221  1356788999999999999998732        245566665443

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.44  E-value=3.6e-13  Score=126.39  Aligned_cols=123  Identities=19%  Similarity=0.232  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      +.....+...+...++.+|||+|||+|..+..+++..++.+++++|+++.+++.++++++..+    .++.++.+|+..+
T Consensus       232 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g----~~~~~~~~D~~~~  307 (429)
T 1sqg_A          232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRYP  307 (429)
T ss_dssp             CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTCT
T ss_pred             CHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC----CCeEEEeCchhhc
Confidence            344556666777788899999999999999999998766799999999999999999998876    3589999999887


Q ss_pred             C--CCCCchhhhee------cchhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccC
Q 021344          232 P--FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       232 p--~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +  +++++||+|++      .+++++.++.                ..+++++.++|||||++++++.+..
T Consensus       308 ~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~  378 (429)
T 1sqg_A          308 SQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  378 (429)
T ss_dssp             HHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             hhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            6  55678999985      3456665553                3789999999999999999886543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.44  E-value=2.5e-13  Score=120.49  Aligned_cols=111  Identities=14%  Similarity=0.142  Sum_probs=86.1

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCCCeEEEEecCCCC-CCCCCchhhhe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCRL-PFASGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~~~v~~~~~d~~~l-p~~~~~fD~V~  242 (314)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...+.. ...+++++.+|+.+. +..+++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            3568999999999999999998866679999999999999999987542100 136899999998653 32357899999


Q ss_pred             ecchhccCCCH----HHHHHHHHhhcccCcEEEEEec
Q 021344          243 AGAALHCWPSP----SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       243 ~~~vl~h~~d~----~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +.....+.+..    ..+++++.++|||||++++...
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            85432221111    5899999999999999999863

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.44  E-value=7.5e-14  Score=127.72  Aligned_cols=110  Identities=16%  Similarity=0.162  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCc------ccHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCG------SGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR  225 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG------~G~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~  225 (314)
                      ...+.+.+.+.. ++.+|||||||      +|..+..+++ .+++.+|+|+|+|+.+.        .    ...++++++
T Consensus       204 ~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~----~~~rI~fv~  270 (419)
T 3sso_A          204 PHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V----DELRIRTIQ  270 (419)
T ss_dssp             HHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G----CBTTEEEEE
T ss_pred             HHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h----cCCCcEEEE
Confidence            344444444433 46799999999      5555555554 45677999999999872        1    137899999


Q ss_pred             ecCCCCCCC------CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          226 ADVCRLPFA------SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       226 ~d~~~lp~~------~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +|+.++++.      +++||+|++.. .+++.+...+|+++.++|||||++++.+..
T Consensus       271 GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          271 GDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             CCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             ecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            999998876      68999999864 466778889999999999999999998876

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.43  E-value=2.7e-13  Score=117.11  Aligned_cols=119  Identities=15%  Similarity=0.172  Sum_probs=93.4

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      .....+...+...++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|+++++..+  ...+++++.+|+.+.
T Consensus        57 ~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~  134 (237)
T 3c3y_A           57 LAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG--VEHKINFIESDAMLA  134 (237)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHH
Confidence            3334444444555678999999999999999998854 5799999999999999999998876  335799999998653


Q ss_pred             -C-C-----CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          232 -P-F-----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 -p-~-----~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       + +     .+++||+|++....   .+...+++++.++|||||++++....
T Consensus       135 l~~l~~~~~~~~~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG~lv~d~~~  183 (237)
T 3c3y_A          135 LDNLLQGQESEGSYDFGFVDADK---PNYIKYHERLMKLVKVGGIVAYDNTL  183 (237)
T ss_dssp             HHHHHHSTTCTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred             HHHHHhccCCCCCcCEEEECCch---HHHHHHHHHHHHhcCCCeEEEEecCC
Confidence             2 2     15789999986432   24578899999999999999987643

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.42  E-value=5.5e-13  Score=117.82  Aligned_cols=109  Identities=16%  Similarity=0.186  Sum_probs=85.4

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCCCeEEEEecCCC-CCCCCCchhhhe
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAVH  242 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~v~~~~~d~~~-lp~~~~~fD~V~  242 (314)
                      ++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...  +. ...+++++.+|+.. ++..+++||+|+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~-~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL-DDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT-TSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            567999999999999999998754569999999999999999987531  11 23689999999865 333457899999


Q ss_pred             ecchhccCCC----HHHHHHHHHhhcccCcEEEEEec
Q 021344          243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       243 ~~~vl~h~~d----~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +.....+.+.    ...+++++.++|||||++++...
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            8543322111    25789999999999999999863

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.41  E-value=5.9e-13  Score=118.84  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCCCeEEEEecCCC-CCCCCCchhhhe
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DNTILTSNLALVRADVCR-LPFASGFVDAVH  242 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~v~~~~~d~~~-lp~~~~~fD~V~  242 (314)
                      .+.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++..  .+. ...+++++.+|+.. ++..+++||+|+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF-DDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHHhhCCCCceEEE
Confidence            46799999999999999999885567999999999999999998753  110 13689999999755 344467899999


Q ss_pred             ecchhccCC-----CHHHHHHHHHhhcccCcEEEEEec
Q 021344          243 AGAALHCWP-----SPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       243 ~~~vl~h~~-----d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +...-.++.     ....+++++.++|||||++++...
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence            853211021     126889999999999999999863

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.41  E-value=4.2e-13  Score=120.21  Aligned_cols=111  Identities=15%  Similarity=0.152  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCCCeEEEEecCCC-CCCCCCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DNTILTSNLALVRADVCR-LPFASGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~v~~~~~d~~~-lp~~~~~fD~V  241 (314)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++..  .+. ...+++++.+|+.+ ++..+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~-~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY-SSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc-CCCcEEEEECcHHHHHhhCCCCceEE
Confidence            456899999999999999999886667999999999999999998764  110 13689999999865 34446789999


Q ss_pred             eecchhccCC----CHHHHHHHHHhhcccCcEEEEEecc
Q 021344          242 HAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       242 ~~~~vl~h~~----d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++.......+    ....+++++.++|||||++++....
T Consensus       173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            9864422111    1246899999999999999987633

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.41  E-value=2.5e-13  Score=118.31  Aligned_cols=105  Identities=13%  Similarity=0.113  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCC---CCchh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFA---SGFVD  239 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l---p~~---~~~fD  239 (314)
                      ++.+|||+|||+|.++..++...+..+|+|+|+|+.+++.|+++++..+  ...+++++++|+.+.   +++   +++||
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEIIYD  142 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC--CCccEEEEEcchhhhhhhhhhcccCCccc
Confidence            4679999999999999988887544599999999999999999998876  234699999997652   444   26899


Q ss_pred             hheecchhccCC---------------CHHHHHHHHHhhcccCcEEEE
Q 021344          240 AVHAGAALHCWP---------------SPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       240 ~V~~~~vl~h~~---------------d~~~~l~~i~r~LkpGG~l~i  272 (314)
                      +|+++-.+++..               ....++.++.++|||||.+.+
T Consensus       143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             EEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            999974443322               112345666677777766544

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.41  E-value=6.6e-13  Score=118.77  Aligned_cols=106  Identities=13%  Similarity=0.147  Sum_probs=85.2

Q ss_pred             CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhheecc
Q 021344          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGA  245 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~~~~  245 (314)
                      .+|||||||+|.+++.+++..+..+++++|+++.+++.|++++...   ...+++++.+|+.+.  .+++++||+|++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~---~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP---RAPRVKIRVDDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC---CTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc---CCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence            4999999999999999999776779999999999999999987543   236899999998653  23467899999854


Q ss_pred             hhccCCC----HHHHHHHHHhhcccCcEEEEEecc
Q 021344          246 ALHCWPS----PSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       246 vl~h~~d----~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ..+....    ...+++++.++|||||++++....
T Consensus       168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            3222111    258999999999999999988754

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.41  E-value=4.1e-13  Score=121.17  Aligned_cols=109  Identities=14%  Similarity=0.148  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCCCeEEEEecCCC-CCCCCCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~v~~~~~d~~~-lp~~~~~fD~V  241 (314)
                      .++.+|||||||+|.++..+++..+..+++++|+|+.+++.|++++...  +. ...+++++.+|+.+ ++..+++||+|
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fDvI  193 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLENVTNTYDVI  193 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG-GSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-CCCcEEEEEccHHHHHhhcCCCceEE
Confidence            3567999999999999999998755679999999999999999987641  10 13689999999865 23335789999


Q ss_pred             eecchhccCC---C--HHHHHHHHHhhcccCcEEEEEec
Q 021344          242 HAGAALHCWP---S--PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       242 ~~~~vl~h~~---d--~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++... +++.   +  ...+++++.++|||||++++...
T Consensus       194 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  231 (321)
T 2pt6_A          194 IVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  231 (321)
T ss_dssp             EEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            98642 2221   1  16889999999999999999763

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.41  E-value=9.5e-13  Score=119.27  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCCCeEEEEecCCCC-C-CCCCchhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-P-FASGFVDA  240 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~v~~~~~d~~~l-p-~~~~~fD~  240 (314)
                      .++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...  +. ...+++++.+|+.+. + ..+++||+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl-~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-EDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-CCCcEEEEECCHHHHHHhccCCCccE
Confidence            4568999999999999999998865679999999999999999987642  10 136899999998653 2 33578999


Q ss_pred             heecch--hccCCC--HHHHHHHHHhhcccCcEEEEEe
Q 021344          241 VHAGAA--LHCWPS--PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       241 V~~~~v--l~h~~d--~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |++...  .++..+  ...+++++.++|||||++++..
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            998543  111111  3689999999999999999975

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.40  E-value=7.9e-13  Score=112.75  Aligned_cols=125  Identities=12%  Similarity=0.098  Sum_probs=95.0

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA  234 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~~  234 (314)
                      +.+.++++  ++.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..+  ...++++..+|... ++. 
T Consensus         7 ~~l~~~v~--~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~i~~~~~d~l~~l~~-   81 (225)
T 3kr9_A            7 ELVASFVS--QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG--LKEKIQVRLANGLAAFEE-   81 (225)
T ss_dssp             HHHHTTSC--TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG-
T ss_pred             HHHHHhCC--CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECchhhhccc-
Confidence            34555554  4679999999999999999999877789999999999999999999987  34579999999853 332 


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHHHh
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLI  295 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~~~  295 (314)
                      .++||+|+..+.-..  -...++.+....|+++|++++....        ....++.++..
T Consensus        82 ~~~~D~IviaG~Gg~--~i~~Il~~~~~~L~~~~~lVlq~~~--------~~~~vr~~L~~  132 (225)
T 3kr9_A           82 TDQVSVITIAGMGGR--LIARILEEGLGKLANVERLILQPNN--------REDDLRIWLQD  132 (225)
T ss_dssp             GGCCCEEEEEEECHH--HHHHHHHHTGGGCTTCCEEEEEESS--------CHHHHHHHHHH
T ss_pred             CcCCCEEEEcCCChH--HHHHHHHHHHHHhCCCCEEEEECCC--------CHHHHHHHHHH
Confidence            226998886543211  1357799999999999999986631        34555555543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.40  E-value=3.6e-13  Score=121.04  Aligned_cols=108  Identities=13%  Similarity=0.132  Sum_probs=82.8

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCCCeEEEEecCCC-CCCCCCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~v~~~~~d~~~-lp~~~~~fD~V  241 (314)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...  +. ...+++++.+|+.+ ++..+++||+|
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~-~~~rv~~~~~D~~~~l~~~~~~fD~I  185 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF-SHPKLDLFCGDGFEFLKNHKNEFDVI  185 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG-GCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcccc-CCCCEEEEEChHHHHHHhcCCCceEE
Confidence            3467999999999999999998866679999999999999999987642  10 13689999999865 33346789999


Q ss_pred             eecchhccCCCH-----HHHHHHHHhhcccCcEEEEEe
Q 021344          242 HAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       242 ~~~~vl~h~~d~-----~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++... +++...     ..+++++.++|||||++++..
T Consensus       186 i~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          186 ITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            98543 332211     578999999999999999976

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.40  E-value=3.2e-13  Score=119.47  Aligned_cols=97  Identities=16%  Similarity=0.241  Sum_probs=73.7

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEE-EecCCCCC---CCCCchhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP---FASGFVDA  240 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~-~~d~~~lp---~~~~~fD~  240 (314)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.+.+.        ..++... ..|+..++   ++..+||+
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~--------~~rv~~~~~~ni~~l~~~~l~~~~fD~  154 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQ--------DDRVRSMEQYNFRYAEPVDFTEGLPSF  154 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHT--------CTTEEEECSCCGGGCCGGGCTTCCCSE
T ss_pred             ccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh--------CcccceecccCceecchhhCCCCCCCE
Confidence            356799999999999999999885 35899999999999885441        1333322 23443332   23446999


Q ss_pred             heecchhccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      |++..+++++   ..+|.++.++|||||.+++.
T Consensus       155 v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          155 ASIDVSFISL---NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             EEECCSSSCG---GGTHHHHHHHSCTTCEEEEE
T ss_pred             EEEEeeHhhH---HHHHHHHHHHcCcCCEEEEE
Confidence            9998887754   77899999999999999987

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.39  E-value=6.2e-14  Score=120.78  Aligned_cols=108  Identities=19%  Similarity=0.137  Sum_probs=71.0

Q ss_pred             HHHHhcc-CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE-ecCCCCCCCC
Q 021344          158 AQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFAS  235 (314)
Q Consensus       158 l~~~l~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~-~d~~~lp~~~  235 (314)
                      +.+.+.. .++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.++++..........++.++. .|+....+..
T Consensus        28 ~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  106 (232)
T 3opn_A           28 ALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSF  106 (232)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSE
T ss_pred             HHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCE
Confidence            3334443 3567999999999999999999863 49999999999999877632210000001222222 2332211233


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+||++++..        ..+++++.++|||||++++..
T Consensus       107 ~~~D~v~~~l--------~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          107 TSIDVSFISL--------DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             EEECCSSSCG--------GGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEEEhhhH--------HHHHHHHHHhccCCCEEEEEE
Confidence            4566666542        678999999999999999863

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.39  E-value=1.4e-12  Score=123.53  Aligned_cols=123  Identities=17%  Similarity=0.173  Sum_probs=97.2

Q ss_pred             HHHHHhccC--CCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          157 MAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       157 ~l~~~l~~~--~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      .+...+...  ++.+|||+|||+|..+..++.... ...|+++|+++.+++.++++++..+.   .++.++.+|+..++.
T Consensus       106 l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~---~nv~~~~~D~~~~~~  182 (479)
T 2frx_A          106 LPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI---SNVALTHFDGRVFGA  182 (479)
T ss_dssp             HHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCCSTTHHH
T ss_pred             HHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCCHHHhhh
Confidence            444556666  789999999999999999998742 45999999999999999999988763   579999999988753


Q ss_pred             -CCCchhhheec------chhccCCC----------------HHHHHHHHHhhcccCcEEEEEecccCCCCC
Q 021344          234 -ASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSST  282 (314)
Q Consensus       234 -~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~  282 (314)
                       .+++||+|++.      .++.+.++                ...+|+++.++|||||++++++.+..+..+
T Consensus       183 ~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~En  254 (479)
T 2frx_A          183 AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN  254 (479)
T ss_dssp             HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTT
T ss_pred             hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccC
Confidence             45789999972      34444333                136899999999999999999876544433

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.39  E-value=6.4e-13  Score=110.83  Aligned_cols=100  Identities=17%  Similarity=0.192  Sum_probs=76.8

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCC---------CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEE-EecCCCCC-
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP-  232 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~---------~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~-~~d~~~lp-  232 (314)
                      ..++.+|||+|||+|.++..+++..+.         .+|+|+|+++..              ...+++++ .+|+...+ 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------------~~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------------PLEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------------CCTTCEEECSCCTTSHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------------cCCCCeEEEeccCCCHHH
Confidence            456889999999999999999998432         699999999831              12568888 88987643 


Q ss_pred             -------CCCCchhhheecchhccC----CCH-------HHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 -------FASGFVDAVHAGAALHCW----PSP-------SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 -------~~~~~fD~V~~~~vl~h~----~d~-------~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                             +++++||+|++...++..    .+.       ..+++++.++|||||++++.++..
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence                   335689999986554432    233       478999999999999999987643

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.37  E-value=3.2e-12  Score=117.79  Aligned_cols=105  Identities=13%  Similarity=0.035  Sum_probs=87.1

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCC-CCCchhhhe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~-~~~~fD~V~  242 (314)
                      .++.+|||+| |+|.++..++..++..+|+|+|+++.+++.|+++++..+.   .+++++.+|+.+ +|. .+++||+|+
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY---EDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC---CCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCEEEEEChhhhhchhhccCCccEEE
Confidence            3578999999 9999999999887667999999999999999999988763   389999999988 663 356899999


Q ss_pred             ecchhccCCCHHHHHHHHHhhcccCcEE-EEEe
Q 021344          243 AGAALHCWPSPSNAVAEISRILRSGGVF-VGTT  274 (314)
Q Consensus       243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l-~i~~  274 (314)
                      ++..+++. ....+++++.++|||||++ ++..
T Consensus       247 ~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          247 TDPPETLE-AIRAFVGRGIATLKGPRCAGYFGI  278 (373)
T ss_dssp             ECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred             ECCCCchH-HHHHHHHHHHHHcccCCeEEEEEE
Confidence            97654433 2478999999999999954 5544

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.37  E-value=6.4e-13  Score=119.60  Aligned_cols=112  Identities=17%  Similarity=0.091  Sum_probs=87.7

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCCCeEEEEecCCC-CCCCCCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~v~~~~~d~~~-lp~~~~~fD~V  241 (314)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...  +.....+++++.+|+.+ ++..+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            3567999999999999999998865669999999999999999987541  10013689999999866 34446789999


Q ss_pred             eecchhcc-CCC------HHHHHHHHHhhcccCcEEEEEecc
Q 021344          242 HAGAALHC-WPS------PSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       242 ~~~~vl~h-~~d------~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++....++ ...      ...+++++.++|||||++++....
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence            99765433 112      268899999999999999997643

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.36  E-value=2.6e-12  Score=118.32  Aligned_cols=119  Identities=15%  Similarity=0.109  Sum_probs=93.5

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .......+.... ..++.+|||+|||+|.++..++..+...+++|+|+|+.+++.|+++++..+  ...+++++++|+.+
T Consensus       203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g--l~~~i~~~~~D~~~  279 (373)
T 3tm4_A          203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG--VLDKIKFIQGDATQ  279 (373)
T ss_dssp             CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT--CGGGCEEEECCGGG
T ss_pred             cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhh
Confidence            445556666666 667889999999999999999998766689999999999999999998876  23589999999999


Q ss_pred             CCCCCCchhhheecchhccC----CCH----HHHHHHHHhhcccCcEEEEEe
Q 021344          231 LPFASGFVDAVHAGAALHCW----PSP----SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~----~d~----~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +++++++||+|+++-.+...    ...    ..+++++.++|  ||.+++.+
T Consensus       280 ~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~  329 (373)
T 3tm4_A          280 LSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT  329 (373)
T ss_dssp             GGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred             CCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence            98877899999996443221    111    56788888888  55555555

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.36  E-value=3.2e-12  Score=112.53  Aligned_cols=127  Identities=14%  Similarity=0.155  Sum_probs=97.5

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+.  ++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.++++++.++  ...+++++.+|+.+++. .+
T Consensus       118 ri~~~~~--~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~--v~~~v~~~~~D~~~~~~-~~  191 (278)
T 3k6r_A          118 RMAKVAK--PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG-EN  191 (278)
T ss_dssp             HHHHHCC--TTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC-CS
T ss_pred             HHHHhcC--CCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCcHHHhcc-cc
Confidence            4444443  58899999999999999999887 3589999999999999999999988  45789999999988763 56


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHH
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVM  293 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~  293 (314)
                      .||.|++..    .+....++..+.++||+||++.+.++.............+++..
T Consensus       192 ~~D~Vi~~~----p~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~  244 (278)
T 3k6r_A          192 IADRILMGY----VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRIT  244 (278)
T ss_dssp             CEEEEEECC----CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHH
T ss_pred             CCCEEEECC----CCcHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHH
Confidence            899998753    23456788999999999999988766543322333334444443

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.35  E-value=4e-12  Score=106.57  Aligned_cols=96  Identities=14%  Similarity=0.151  Sum_probs=75.1

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ..++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.+++++        .+++++++|+.+++   ++||+|++
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~--------~~~~~~~~d~~~~~---~~~D~v~~  116 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTWIM  116 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhc--------CCCEEEECcHHHCC---CCeeEEEE
Confidence            4467899999999999999999884 347999999999999999864        26899999998865   68999999


Q ss_pred             cchhccCCC--HHHHHHHHHhhcccCcEEEEE
Q 021344          244 GAALHCWPS--PSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       244 ~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      +..++|+.+  ...+++++.+++  |+++++.
T Consensus       117 ~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          117 NPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             CCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             CCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            999998865  247899999988  5544333

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.35  E-value=5.9e-13  Score=125.24  Aligned_cols=119  Identities=17%  Similarity=0.156  Sum_probs=95.3

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA  234 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~  234 (314)
                      .+...+...++.+|||+|||+|..+..++.... ..+|+++|+++.+++.++++++..+.   . +.++.+|+..++ +.
T Consensus        92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~---~-v~~~~~Da~~l~~~~  167 (464)
T 3m6w_A           92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA---P-LAVTQAPPRALAEAF  167 (464)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC---C-CEEECSCHHHHHHHH
T ss_pred             HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---e-EEEEECCHHHhhhhc
Confidence            445566777899999999999999999998743 35899999999999999999998873   4 899999987765 34


Q ss_pred             CCchhhhee------cchhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccCC
Q 021344          235 SGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       235 ~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      +++||+|++      ..++.+-++.                ..+|+++.++|||||+|+.++.+..+
T Consensus       168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~  234 (464)
T 3m6w_A          168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP  234 (464)
T ss_dssp             CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence            678999995      2344444433                57899999999999999998866543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.35  E-value=1.9e-12  Score=108.20  Aligned_cols=98  Identities=16%  Similarity=0.268  Sum_probs=74.9

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-------C-
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-------S-  235 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-------~-  235 (314)
                      ..++.+|||+|||+|.++..+++.+  .+|+|+|+++..              ...++.++++|+.+.+..       . 
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~--~~V~gvD~~~~~--------------~~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLA--RKIISIDLQEME--------------EIAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTC--SEEEEEESSCCC--------------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcC--CcEEEEeccccc--------------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence            4568899999999999999999984  499999999741              126899999999876521       1 


Q ss_pred             ---CchhhheecchhccCC-----------CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 ---GFVDAVHAGAALHCWP-----------SPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ---~~fD~V~~~~vl~h~~-----------d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                         ++||+|++........           ....+++.+.++|||||.|++..+..
T Consensus        87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence               4899999864322111           12467889999999999999888643

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.34  E-value=1.7e-12  Score=114.97  Aligned_cols=107  Identities=13%  Similarity=0.127  Sum_probs=83.1

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CCC------CCCCeEEEEecCCCC-CCCC
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTI------LTSNLALVRADVCRL-PFAS  235 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~------~~~~v~~~~~d~~~l-p~~~  235 (314)
                      .++.+|||||||+|.++..+++. +..+++++|+++.+++.|++++ ..  +..      ...+++++.+|+.+. +. +
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~  150 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N  150 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence            35679999999999999999988 5679999999999999999987 32  100      136899999997542 22 5


Q ss_pred             CchhhheecchhccCCC-----HHHHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d-----~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++||+|++.... ++..     ...+++++.++|||||++++...
T Consensus       151 ~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          151 RGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             CCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            789999986542 2211     25789999999999999999763

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.34  E-value=2.9e-13  Score=118.85  Aligned_cols=107  Identities=18%  Similarity=0.168  Sum_probs=78.1

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEE--EecCCCCCCCCCchh
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV--RADVCRLPFASGFVD  239 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~--~~d~~~lp~~~~~fD  239 (314)
                      ....++.+|||+|||+|.++..+++.   .+|+|+|+++ ++..+++....... ...++.++  ++|+..++  +++||
T Consensus        70 ~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~-~~~~v~~~~~~~D~~~l~--~~~fD  142 (265)
T 2oxt_A           70 GYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITES-YGWNIVKFKSRVDIHTLP--VERTD  142 (265)
T ss_dssp             TSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCB-TTGGGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhc-cCCCeEEEecccCHhHCC--CCCCc
Confidence            33456889999999999999999987   3899999998 43222111000000 01168999  89998876  67899


Q ss_pred             hheecchhccCCCHH-------HHHHHHHhhcccCc--EEEEEecc
Q 021344          240 AVHAGAALHCWPSPS-------NAVAEISRILRSGG--VFVGTTFL  276 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~-------~~l~~i~r~LkpGG--~l~i~~~~  276 (314)
                      +|++..+ ++..++.       .+|+++.++|||||  .+++..+.
T Consensus       143 ~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          143 VIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             EEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            9999877 5555532       37899999999999  99997765

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.34  E-value=2.2e-13  Score=120.27  Aligned_cols=104  Identities=20%  Similarity=0.227  Sum_probs=77.3

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCCCeEEE--EecCCCCCCCCCchhh
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALV--RADVCRLPFASGFVDA  240 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~v~~~--~~d~~~lp~~~~~fD~  240 (314)
                      ..++.+|||+|||+|.++..+++. .  +|+|+|+++ ++..+++.... ..  ...++.++  ++|+..++  +++||+
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~-~--~V~gVD~s~-m~~~a~~~~~~~~~--~~~~v~~~~~~~D~~~l~--~~~fD~  151 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ-P--NVREVKAYT-LGTSGHEKPRLVET--FGWNLITFKSKVDVTKME--PFQADT  151 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS-T--TEEEEEEEC-CCCTTSCCCCCCCC--TTGGGEEEECSCCGGGCC--CCCCSE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc-C--CEEEEECch-hhhhhhhchhhhhh--cCCCeEEEeccCcHhhCC--CCCcCE
Confidence            456789999999999999999988 3  899999998 53322211000 00  01278999  89998876  678999


Q ss_pred             heecchhccCCCHH-------HHHHHHHhhcccCc--EEEEEecc
Q 021344          241 VHAGAALHCWPSPS-------NAVAEISRILRSGG--VFVGTTFL  276 (314)
Q Consensus       241 V~~~~vl~h~~d~~-------~~l~~i~r~LkpGG--~l~i~~~~  276 (314)
                      |++..+ ++..++.       .+|+++.++|||||  .+++..+.
T Consensus       152 Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          152 VLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             EEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            999877 5554432       37899999999999  99987755

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.34  E-value=2.6e-12  Score=112.58  Aligned_cols=98  Identities=12%  Similarity=0.081  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      .+.+|||||||+|.+++.+++. + .+++++|+++.+++.|++++...  +. ...+++++.+|..+..   ++||+|++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~-~~~rv~~~~~D~~~~~---~~fD~Ii~  145 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVK-NNKNFTHAKQLLDLDI---KKYDLIFC  145 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHH-TCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhcccc-CCCeEEEEechHHHHH---hhCCEEEE
Confidence            4679999999999999999988 5 79999999999999998865321  00 1368999999987654   68999998


Q ss_pred             cchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .     ..+|..+++++.++|||||++++..
T Consensus       146 d-----~~dp~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          146 L-----QEPDIHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             S-----SCCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             C-----CCChHHHHHHHHHhcCCCcEEEEEc
Confidence            6     3577889999999999999999875

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.33  E-value=4.5e-12  Score=115.47  Aligned_cols=125  Identities=12%  Similarity=0.105  Sum_probs=97.0

Q ss_pred             CCCchHHHHHHHHHh----ccCCCCeEEEEcCcccHHHHHHHHhCCC-----CeEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 021344          148 FPGPDEEFKMAQEYF----KSAQGGLLVDVSCGSGLFSRKFAKSGTY-----SGVVALDFSENMLRQCYDFIKQDNTILT  218 (314)
Q Consensus       148 ~~~~~~~~~~l~~~l----~~~~~~~iLDiGcG~G~~~~~l~~~~~~-----~~v~giD~s~~~~~~a~~~~~~~~~~~~  218 (314)
                      ++++......+...+    ...++.+|||+|||+|.++..+++..+.     .+++|+|+++.+++.|+.++...+    
T Consensus       108 ~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g----  183 (344)
T 2f8l_A          108 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR----  183 (344)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT----
T ss_pred             CCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC----
Confidence            466666655544443    3445679999999999999998877532     589999999999999999888765    


Q ss_pred             CCeEEEEecCCCCCCCCCchhhheecchhccCCCHH------------------HHHHHHHhhcccCcEEEEEeccc
Q 021344          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS------------------NAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       219 ~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~------------------~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .++.++++|.... ...++||+|+++-.+.++++..                  .++..+.+.|||||++++..+..
T Consensus       184 ~~~~i~~~D~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          184 QKMTLLHQDGLAN-LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             CCCEEEESCTTSC-CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             CCceEEECCCCCc-cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            3689999998653 3457899999987766654332                  57999999999999999988654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.32  E-value=1.7e-11  Score=103.16  Aligned_cols=100  Identities=14%  Similarity=0.195  Sum_probs=81.8

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ..++.+|||+|||+|.++..+++.+. .+++|+|+++.+++.++++++..+    .+++++.+|+.+++   ++||+|++
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~---~~~D~v~~  118 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFK----GKFKVFIGDVSEFN---SRVDIVIM  118 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGT----TSEEEEESCGGGCC---CCCSEEEE
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcC----CCEEEEECchHHcC---CCCCEEEE
Confidence            44678999999999999999998863 479999999999999999887765    38999999998864   48999999


Q ss_pred             cchhccCC--CHHHHHHHHHhhcccCcEEEEE
Q 021344          244 GAALHCWP--SPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       244 ~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      +..+++..  ....+++++.+++  ||.+++.
T Consensus       119 ~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          119 NPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             CCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             cCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            87776654  3357889999988  5555444

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.32  E-value=3e-12  Score=110.15  Aligned_cols=114  Identities=14%  Similarity=0.121  Sum_probs=93.4

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ....+.+.+  .+..+|||||||+|-++..+....+..+|+++|+++.+++.+++++...+    .+..+...|....+ 
T Consensus       122 fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g----~~~~~~v~D~~~~~-  194 (281)
T 3lcv_B          122 FYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN----VPHRTNVADLLEDR-  194 (281)
T ss_dssp             HHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT----CCEEEEECCTTTSC-
T ss_pred             HHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeeecccC-
Confidence            333344444  34779999999999999999888788899999999999999999998876    56889999987655 


Q ss_pred             CCCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEec
Q 021344          234 ASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +.++||+|++.-+++|+.+-.  ..+ ++...|+++|+++-...
T Consensus       195 p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          195 LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred             CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence            457899999999999996553  345 89999999999987654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.31  E-value=4.6e-12  Score=117.62  Aligned_cols=111  Identities=17%  Similarity=0.178  Sum_probs=89.1

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC----CCCchhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDA  240 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~----~~~~fD~  240 (314)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++..++. ..+++++.+|+.+...    ..++||+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~v~~~~~D~~~~~~~~~~~~~~fD~  296 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCC-GGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ccceEEEECCHHHHHHHHHhcCCCCCE
Confidence            467899999999999999999986 459999999999999999999887610 2389999999866421    1468999


Q ss_pred             heecc---------hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          241 VHAGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       241 V~~~~---------vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      |++.-         +.++..+...++.++.+.|+|||++++.+...
T Consensus       297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99852         23333556788999999999999999988554

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.30  E-value=1.2e-12  Score=113.55  Aligned_cols=113  Identities=9%  Similarity=0.157  Sum_probs=84.2

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.+++++..     ..+++++.+|+.+
T Consensus        15 d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~   87 (244)
T 1qam_A           15 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQ   87 (244)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGG
T ss_pred             CHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHh
Confidence            345566777777777788999999999999999999975  999999999999999987653     2589999999998


Q ss_pred             CCCCC-Cchhhhe----------ecchhccCCCHHHHH----HHHHhhcccCcEE
Q 021344          231 LPFAS-GFVDAVH----------AGAALHCWPSPSNAV----AEISRILRSGGVF  270 (314)
Q Consensus       231 lp~~~-~~fD~V~----------~~~vl~h~~d~~~~l----~~i~r~LkpGG~l  270 (314)
                      +++++ ..|++|.          ....++|...+..++    +.+.|++++||.+
T Consensus        88 ~~~~~~~~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l  142 (244)
T 1qam_A           88 FKFPKNQSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL  142 (244)
T ss_dssp             CCCCSSCCCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred             CCcccCCCeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence            88764 4554332          123444544444444    4477788888754

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.30  E-value=7.5e-12  Score=106.73  Aligned_cols=102  Identities=14%  Similarity=0.110  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||||||.|.++..+.   +..+++|+|+++.+++.+++++...+    .+..+..+|....+.+ ++||+|++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g----~~~~~~v~D~~~~~~~-~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKD----WDFTFALQDVLCAPPA-EAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTT----CEEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeecccCCCC-CCcchHHHH
Confidence            457899999999999999888   45699999999999999999987765    7889999999887754 589999999


Q ss_pred             chhccCCCHH-HHHHHHHhhcccCcEEEEEe
Q 021344          245 AALHCWPSPS-NAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       245 ~vl~h~~d~~-~~l~~i~r~LkpGG~l~i~~  274 (314)
                      -++||+.+.. ....++...|+++|+++-..
T Consensus       176 k~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          176 KLLPLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             SCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             HHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            7777775332 23338888999998776554

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.29  E-value=2.4e-12  Score=119.01  Aligned_cols=110  Identities=16%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC-CeEEEEecCCCC-CC---CCCchh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRL-PF---ASGFVD  239 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~-~v~~~~~d~~~l-p~---~~~~fD  239 (314)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++..++  .. +++++++|+.+. +.   ..++||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~--~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHL--DMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTC--CCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CccceEEEECCHHHHHHHHHHhCCCcc
Confidence            457899999999999999999865 34899999999999999999988763  23 899999998652 21   245899


Q ss_pred             hheecchh-----ccCCCH----HHHHHHHHhhcccCcEEEEEeccc
Q 021344          240 AVHAGAAL-----HCWPSP----SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       240 ~V~~~~vl-----~h~~d~----~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +|++.-..     .+..+.    ..+++.+.++|+|||++++.+...
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99984322     233333    356778899999999999988544

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.29  E-value=1.7e-12  Score=121.99  Aligned_cols=120  Identities=15%  Similarity=0.146  Sum_probs=94.0

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA  234 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~  234 (314)
                      .+...+...++.+|||+|||+|..+..++... ...+|+++|+++.+++.++++++..+.   .++.++.+|+..++ ..
T Consensus        96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~---~nv~v~~~Da~~l~~~~  172 (456)
T 3m4x_A           96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV---SNAIVTNHAPAELVPHF  172 (456)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC---SSEEEECCCHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhhhc
Confidence            45556677789999999999999999998763 235899999999999999999998873   57999999987664 23


Q ss_pred             CCchhhheec------chhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccCC
Q 021344          235 SGFVDAVHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       235 ~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      +++||+|++.      .++.+-++.                ..+|+++.++|||||+++.+|.+-.+
T Consensus       173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  239 (456)
T 3m4x_A          173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP  239 (456)
T ss_dssp             TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred             cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence            5789999973      233321111                26799999999999999998866543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.29  E-value=4.5e-12  Score=117.74  Aligned_cols=109  Identities=16%  Similarity=0.142  Sum_probs=88.4

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC----CCCchhhh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV  241 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~----~~~~fD~V  241 (314)
                      ++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|+++++..++  ..+++++.+|+.+...    ..++||+|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V  293 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGV--EDRMKFIVGSAFEEMEKLQKKGEKFDIV  293 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC--CccceEEECCHHHHHHHHHhhCCCCCEE
Confidence            57899999999999999999875 34899999999999999999988763  2389999999866431    25689999


Q ss_pred             eecc---------hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          242 HAGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       242 ~~~~---------vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++.-         +.++..+...++.++.++|||||++++.+...
T Consensus       294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            9842         22333445678999999999999999988654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.27  E-value=2.8e-12  Score=118.54  Aligned_cols=107  Identities=20%  Similarity=0.235  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC----CCCchhhh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV  241 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~----~~~~fD~V  241 (314)
                      ++.+|||+|||+|.++..+++..  .+|+|+|+|+.+++.|+++++..+.   .+++++.+|+.+...    .+++||+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~n~~~n~~---~~~~~~~~d~~~~~~~~~~~~~~fD~I  283 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFDLV  283 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCC---CCceEEECCHHHHHHHHHhcCCCeeEE
Confidence            57799999999999999999884  4899999999999999999988763   459999999876421    15689999


Q ss_pred             eecch---------hccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          242 HAGAA---------LHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       242 ~~~~v---------l~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++.-.         .+...+...++.++.++|+|||++++.+...
T Consensus       284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            98421         1222334678999999999999999988654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.26  E-value=1e-11  Score=122.93  Aligned_cols=110  Identities=17%  Similarity=0.218  Sum_probs=89.4

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCCCCCchhhheec
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~~~~~fD~V~~~  244 (314)
                      ++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|+++++..++ ...+++++++|+.+ ++...++||+|++.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl-~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGL-TGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC-CSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            578999999999999999998764 4799999999999999999998873 11479999999876 34446789999984


Q ss_pred             c-----------hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          245 A-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       245 ~-----------vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      -           ++++..+...+++.+.++|||||++++.+...
T Consensus       617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence            3           23333455678999999999999999888553

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.24  E-value=1.2e-11  Score=114.45  Aligned_cols=107  Identities=16%  Similarity=0.063  Sum_probs=82.9

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CCCCchhhheec
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~~~~fD~V~~~  244 (314)
                      ++.+|||+|||+|.++..+++.+.  .|+++|+|+.+++.++++++..+.    ...+.++|+.+.. ...+.||+|++.
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~----~~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGL----RVDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC----CCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCC----CCcEEEccHHHHHHHhcCCCCEEEEC
Confidence            488999999999999999999876  699999999999999999988773    2356688876532 213449999985


Q ss_pred             chh---------ccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          245 AAL---------HCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       245 ~vl---------~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      -..         ....+...+++.+.++|||||++++.+.+..
T Consensus       288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            321         1112335789999999999999998886543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.23  E-value=1.1e-11  Score=110.79  Aligned_cols=88  Identities=16%  Similarity=0.259  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++...+   ..+++++.+|+.++
T Consensus        28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~~---~~~v~~~~~D~~~~  102 (299)
T 2h1r_A           28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYEG---YNNLEVYEGDAIKT  102 (299)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHTT---CCCEEC----CCSS
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC---CCceEEEECchhhC
Confidence            45566777777777888999999999999999998865  99999999999999999887654   26899999999888


Q ss_pred             CCCCCchhhheecch
Q 021344          232 PFASGFVDAVHAGAA  246 (314)
Q Consensus       232 p~~~~~fD~V~~~~v  246 (314)
                      ++.  +||+|+++..
T Consensus       103 ~~~--~~D~Vv~n~p  115 (299)
T 2h1r_A          103 VFP--KFDVCTANIP  115 (299)
T ss_dssp             CCC--CCSEEEEECC
T ss_pred             Ccc--cCCEEEEcCC
Confidence            754  7999998643

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.22  E-value=3.6e-11  Score=109.15  Aligned_cols=102  Identities=20%  Similarity=0.201  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||+|||+|.++.. ++ + ..+|+|+|+|+.+++.++++++..+  ...++.++.+|+.+..   ++||+|++.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~-~~~V~~vD~s~~ai~~a~~n~~~n~--l~~~v~~~~~D~~~~~---~~fD~Vi~d  265 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-N-AKKIYAIDINPHAIELLKKNIKLNK--LEHKIIPILSDVREVD---VKGNRVIMN  265 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-T-SSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-C-CCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECChHHhc---CCCcEEEEC
Confidence            3578999999999999999 77 3 4599999999999999999999876  2358999999998765   789999985


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      -.-    ....+++.+.++|+|||++++.++...
T Consensus       266 pP~----~~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          266 LPK----FAHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             CTT----TGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             CcH----hHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence            221    123789999999999999999887654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.22  E-value=7.4e-11  Score=110.74  Aligned_cols=112  Identities=16%  Similarity=0.220  Sum_probs=86.9

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---  230 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---  230 (314)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++..++   .++.++.+|+.+   
T Consensus       274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~---~~v~f~~~d~~~~l~  348 (433)
T 1uwv_A          274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGL---QNVTFYHENLEEDVT  348 (433)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCTTSCCS
T ss_pred             HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEECCHHHHhh
Confidence            455566666666778999999999999999998854  999999999999999999988763   589999999977   


Q ss_pred             -CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          231 -LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 -lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                       +++.+++||+|++.---.-.   ..+++.+.+ ++|+++++++.
T Consensus       349 ~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc  389 (433)
T 1uwv_A          349 KQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSC  389 (433)
T ss_dssp             SSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEES
T ss_pred             hhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEEC
Confidence             34566789999984221111   245555543 78999888866

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.22  E-value=2.3e-11  Score=114.56  Aligned_cols=128  Identities=15%  Similarity=0.135  Sum_probs=101.6

Q ss_pred             CCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-------------CCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344          147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-------------TYSGVVALDFSENMLRQCYDFIKQD  213 (314)
Q Consensus       147 ~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-------------~~~~v~giD~s~~~~~~a~~~~~~~  213 (314)
                      .++++....+.+.+.+...++.+|||+|||+|.++..+.+..             ...+++|+|+++.+++.|+.++...
T Consensus       152 ~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~  231 (445)
T 2okc_A          152 QYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH  231 (445)
T ss_dssp             GGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT
T ss_pred             cccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh
Confidence            367888899999999888788899999999999998887652             1247999999999999999988776


Q ss_pred             CCCCCCCeEEEEecCCCCCCCCCchhhheecchhccCCC-----------------HHHHHHHHHhhcccCcEEEEEecc
Q 021344          214 NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPS-----------------PSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       214 ~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d-----------------~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +. ...++.+.++|....+.. ++||+|+++-.+.+...                 ...+++.+.+.|||||++++..+.
T Consensus       232 g~-~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          232 GI-GTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             TC-CSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CC-CcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            63 011678899998776643 48999999755544321                 137899999999999999988854

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.21  E-value=5.1e-14  Score=122.31  Aligned_cols=113  Identities=11%  Similarity=0.167  Sum_probs=88.1

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.+++++..     ..+++++.+|+.++++
T Consensus        17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~--~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~   89 (245)
T 1yub_A           17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQF   89 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTC
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhhcCc
Confidence            445667777777788999999999999999999874  999999999999988876541     2589999999999887


Q ss_pred             CC-Cchhhheec-----------chhccCCCHHHHH----HHHHhhcccCcEEEEEe
Q 021344          234 AS-GFVDAVHAG-----------AALHCWPSPSNAV----AEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 ~~-~~fD~V~~~-----------~vl~h~~d~~~~l----~~i~r~LkpGG~l~i~~  274 (314)
                      ++ ++| .|+++           .+++|..+...++    +.+.++|||||.+++..
T Consensus        90 ~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           90 PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            63 678 45543           2344555555566    77999999999877654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.21  E-value=2.5e-12  Score=115.13  Aligned_cols=103  Identities=15%  Similarity=0.098  Sum_probs=74.1

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeC----CHHHHHHHHHHHHhcCCCCCCCeEEEEe-cCCCCCCCCCch
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFV  238 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~----s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~~~lp~~~~~f  238 (314)
                      ..++.+|||+|||+|.++..+++.+   +|+|+|+    ++.+++...  .+..   ...++.++++ |+..++  .++|
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~~---~V~gvD~~~~~~~~~~~~~~--~~~~---~~~~v~~~~~~D~~~l~--~~~f  149 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGLK---NVREVKGLTKGGPGHEEPIP--MSTY---GWNLVRLQSGVDVFFIP--PERC  149 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTST---TEEEEEEECCCSTTSCCCCC--CCST---TGGGEEEECSCCTTTSC--CCCC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhcC---CEEEEeccccCchhHHHHHH--hhhc---CCCCeEEEeccccccCC--cCCC
Confidence            3467899999999999999999882   8999999    554332111  0000   1157899999 888775  5689


Q ss_pred             hhheecchhc---cCCCHH---HHHHHHHhhcccCcEEEEEecc
Q 021344          239 DAVHAGAALH---CWPSPS---NAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       239 D~V~~~~vl~---h~~d~~---~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      |+|++..+++   +..+..   .+|+++.++|||||.+++..+.
T Consensus       150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~  193 (305)
T 2p41_A          150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN  193 (305)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred             CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            9999976653   222222   4789999999999999987654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.17  E-value=2.5e-10  Score=106.69  Aligned_cols=100  Identities=17%  Similarity=0.172  Sum_probs=79.6

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ..++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++..++   . ++++.+|+.++..  .+||+|++
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~ngl---~-v~~~~~d~~~~~~--~~fD~Vv~  359 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEINNV---D-AEFEVASDREVSV--KGFDTVIV  359 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC---C-EEEEECCTTTCCC--TTCSEEEE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC---c-EEEEECChHHcCc--cCCCEEEE
Confidence            44678999999999999999998865  999999999999999999987763   3 9999999988653  28999998


Q ss_pred             cchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .-.-...  ...+++.+. .|+|||+++++.
T Consensus       360 dPPr~g~--~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          360 DPPRAGL--HPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             CCCTTCS--CHHHHHHHH-HHCCSEEEEEES
T ss_pred             cCCccch--HHHHHHHHH-hcCCCcEEEEEC
Confidence            5332111  134566664 589999999976

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.16  E-value=9.6e-11  Score=104.09  Aligned_cols=89  Identities=12%  Similarity=0.225  Sum_probs=77.0

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++...     .+++++++|+.+
T Consensus        35 d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~~-----~~v~vi~gD~l~  107 (295)
T 3gru_A           35 DKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKELY-----NNIEIIWGDALK  107 (295)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHHC-----SSEEEEESCTTT
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhccC-----CCeEEEECchhh
Confidence            345667788888888889999999999999999999865  9999999999999999988732     689999999999


Q ss_pred             CCCCCCchhhheecch
Q 021344          231 LPFASGFVDAVHAGAA  246 (314)
Q Consensus       231 lp~~~~~fD~V~~~~v  246 (314)
                      +++++.+||+|+++..
T Consensus       108 ~~~~~~~fD~Iv~NlP  123 (295)
T 3gru_A          108 VDLNKLDFNKVVANLP  123 (295)
T ss_dssp             SCGGGSCCSEEEEECC
T ss_pred             CCcccCCccEEEEeCc
Confidence            8888878999997643

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.14  E-value=1.6e-10  Score=106.87  Aligned_cols=123  Identities=11%  Similarity=0.034  Sum_probs=94.3

Q ss_pred             CchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC--------------------------------------C
Q 021344          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------S  191 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~--------------------------------------~  191 (314)
                      -.+.....+.......++..|||++||+|.++..++..+.+                                      .
T Consensus       185 l~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  264 (393)
T 3k0b_A          185 IKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL  264 (393)
T ss_dssp             CCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence            34556667777777777889999999999999888876432                                      4


Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhc-cC---CCHHHHHHHHHhhccc-
Q 021344          192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CW---PSPSNAVAEISRILRS-  266 (314)
Q Consensus       192 ~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~---~d~~~~l~~i~r~Lkp-  266 (314)
                      +|+|+|+++.+++.|+++++..+  ...+++++++|+.+++.+ ++||+|+++--.. .+   .+...+++++.+.||+ 
T Consensus       265 ~V~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~  341 (393)
T 3k0b_A          265 NIIGGDIDARLIEIAKQNAVEAG--LGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM  341 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTT--CTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             eEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC
Confidence            69999999999999999999887  345799999999888764 5899999972211 11   1234567777777776 


Q ss_pred             -CcEEEEEec
Q 021344          267 -GGVFVGTTF  275 (314)
Q Consensus       267 -GG~l~i~~~  275 (314)
                       ||.+++.+.
T Consensus       342 ~g~~~~iit~  351 (393)
T 3k0b_A          342 PTWSVYVLTS  351 (393)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCEEEEEEC
Confidence             999988884

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.13  E-value=3e-10  Score=104.68  Aligned_cols=122  Identities=13%  Similarity=0.070  Sum_probs=95.2

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC--------------------------------------Ce
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------SG  192 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~--------------------------------------~~  192 (314)
                      .+.....+.......++..+||.+||+|.++..++..+.+                                      .+
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            4556666777777777889999999999999988876442                                      46


Q ss_pred             EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhc-cCC---CHHHHHHHHHhhccc--
Q 021344          193 VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CWP---SPSNAVAEISRILRS--  266 (314)
Q Consensus       193 v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~~---d~~~~l~~i~r~Lkp--  266 (314)
                      ++|+|+++.+++.|+++++..+  ....++++++|+.+++.+ ++||+|+++--.. .+.   +...+++++.+.||+  
T Consensus       259 v~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~  335 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKNAREVG--LEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLK  335 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCT
T ss_pred             EEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999887  345799999999988764 4899999973221 122   234677777778876  


Q ss_pred             CcEEEEEec
Q 021344          267 GGVFVGTTF  275 (314)
Q Consensus       267 GG~l~i~~~  275 (314)
                      ||.+++.+.
T Consensus       336 g~~~~iit~  344 (384)
T 3ldg_A          336 TWSQFILTN  344 (384)
T ss_dssp             TSEEEEEES
T ss_pred             CcEEEEEEC
Confidence            999998884

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.12  E-value=1.6e-10  Score=106.65  Aligned_cols=122  Identities=14%  Similarity=0.074  Sum_probs=94.9

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC--------------------------------------Ce
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------SG  192 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~--------------------------------------~~  192 (314)
                      .+.....+.......++..|||+|||+|.++..++..+.+                                      .+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            4556667777777777889999999999999998876432                                      47


Q ss_pred             EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhc-cC---CCHHHHHHHHHhhccc--
Q 021344          193 VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CW---PSPSNAVAEISRILRS--  266 (314)
Q Consensus       193 v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~---~d~~~~l~~i~r~Lkp--  266 (314)
                      |+|+|+++.+++.|++++...+.  ..++++.++|+.+++.+ ++||+|+++--.. .+   .+...+++++.+.||+  
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl--~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~  336 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGV--DEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK  336 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTC--GGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred             EEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999998772  35799999999887754 5899999954321 11   2334677777778877  


Q ss_pred             CcEEEEEec
Q 021344          267 GGVFVGTTF  275 (314)
Q Consensus       267 GG~l~i~~~  275 (314)
                      ||.+++.+.
T Consensus       337 g~~~~iit~  345 (385)
T 3ldu_A          337 NWSYYLITS  345 (385)
T ss_dssp             SCEEEEEES
T ss_pred             CCEEEEEEC
Confidence            888888884

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.12  E-value=5.1e-10  Score=100.22  Aligned_cols=118  Identities=12%  Similarity=0.075  Sum_probs=86.9

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      .+...+...++.+|||+|||+|..+..++.. +...+|+++|+++.+++.++++++..+.   .++.++.+|+.+++...
T Consensus        93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~  169 (309)
T 2b9e_A           93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSD  169 (309)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTC
T ss_pred             HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCChHhcCccc
Confidence            4445667778899999999999999999886 3346999999999999999999998763   68999999987765322


Q ss_pred             ---Cchhhheec------chhccCCC-----------H-------HHHHHHHHhhcccCcEEEEEecccC
Q 021344          236 ---GFVDAVHAG------AALHCWPS-----------P-------SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       236 ---~~fD~V~~~------~vl~h~~d-----------~-------~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                         ++||.|++.      .++..-+|           .       ..+|+.+.++|+ ||+++.++.+-.
T Consensus       170 ~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~  238 (309)
T 2b9e_A          170 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC  238 (309)
T ss_dssp             GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred             cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence               479999962      23332111           1       145777777787 999988876543

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.12  E-value=7.8e-11  Score=109.95  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=90.7

Q ss_pred             CCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEE
Q 021344          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (314)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~  224 (314)
                      ..+..+....+.+.+.+...++.+|||+|||+|.++..++++. ...+++|+|+++.+++.|            .++.++
T Consensus        19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~   86 (421)
T 2ih2_A           19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGI   86 (421)
T ss_dssp             --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEE
T ss_pred             ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEE
Confidence            3456778888888888876567799999999999999999863 356999999999887655            368899


Q ss_pred             EecCCCCCCCCCchhhheecchh---c-------cCCCH-------------------HHHHHHHHhhcccCcEEEEEec
Q 021344          225 RADVCRLPFASGFVDAVHAGAAL---H-------CWPSP-------------------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl---~-------h~~d~-------------------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++|+...+. .++||+|+++-..   .       |+.+.                   ..+++.+.++|+|||++++..+
T Consensus        87 ~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p  165 (421)
T 2ih2_A           87 LADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  165 (421)
T ss_dssp             ESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            999877543 4689999994111   1       12111                   2568999999999999999886


Q ss_pred             cc
Q 021344          276 LR  277 (314)
Q Consensus       276 ~~  277 (314)
                      ..
T Consensus       166 ~~  167 (421)
T 2ih2_A          166 AT  167 (421)
T ss_dssp             GG
T ss_pred             hH
Confidence            54

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.05  E-value=2.9e-10  Score=104.52  Aligned_cols=112  Identities=15%  Similarity=0.221  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .....+.+.+... +.+|||+|||+|.++..+++...  +|+|+|+++.+++.|+++++..++   .+++++.+|+.+..
T Consensus       201 ~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~ng~---~~v~~~~~d~~~~~  274 (369)
T 3bt7_A          201 QMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAANHI---DNVQIIRMAAEEFT  274 (369)
T ss_dssp             HHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHTTC---CSEEEECCCSHHHH
T ss_pred             HHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC---CceEEEECCHHHHH
Confidence            3445555555543 57899999999999999998654  999999999999999999988763   68999999986542


Q ss_pred             --CCC--------------CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 --FAS--------------GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 --~~~--------------~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                        +..              .+||+|++.---      ..+..++.+.|+++|.++..+.+
T Consensus       275 ~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvsc~  328 (369)
T 3bt7_A          275 QAMNGVREFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYISCN  328 (369)
T ss_dssp             HHHSSCCCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEESC
T ss_pred             HHHhhccccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEECC
Confidence              111              379999863110      12356677788899998887743

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.05  E-value=5.8e-10  Score=97.09  Aligned_cols=85  Identities=12%  Similarity=0.196  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++..     ..+++++++|+.++
T Consensus        15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQF   87 (255)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTTC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHhC
Confidence            45667788888888889999999999999999999874  999999999999999998764     26899999999988


Q ss_pred             CCCC----Cchhhheec
Q 021344          232 PFAS----GFVDAVHAG  244 (314)
Q Consensus       232 p~~~----~~fD~V~~~  244 (314)
                      ++++    +.|| |+++
T Consensus        88 ~~~~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           88 DFSSVKTDKPLR-VVGN  103 (255)
T ss_dssp             CGGGSCCSSCEE-EEEE
T ss_pred             CHHHhccCCCeE-EEec
Confidence            7643    4688 4443

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.01  E-value=4e-10  Score=99.75  Aligned_cols=96  Identities=13%  Similarity=-0.010  Sum_probs=70.2

Q ss_pred             ccCCCCeEEEEcC------cccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEE-EEecCCCCCCC
Q 021344          163 KSAQGGLLVDVSC------GSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLPFA  234 (314)
Q Consensus       163 ~~~~~~~iLDiGc------G~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~-~~~d~~~lp~~  234 (314)
                      ...++.+|||+||      |+|.  ..+++. +...+|+|+|+++. +               .++++ +++|+.++++.
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------------~~v~~~i~gD~~~~~~~  121 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------------SDADSTLIGDCATVHTA  121 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------------CSSSEEEESCGGGCCCS
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------------CCCEEEEECccccCCcc
Confidence            4567889999999      5576  334444 33569999999987 1               35778 99999887764


Q ss_pred             CCchhhheecchhc--------cC---CCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          235 SGFVDAVHAGAALH--------CW---PSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 ~~~fD~V~~~~vl~--------h~---~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       ++||+|++....+        +.   .....+++++.++|||||.+++..+..
T Consensus       122 -~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~  174 (290)
T 2xyq_A          122 -NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  174 (290)
T ss_dssp             -SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             -CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence             6899999864321        11   112478999999999999999977543

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.99  E-value=6.2e-10  Score=107.09  Aligned_cols=129  Identities=11%  Similarity=0.015  Sum_probs=99.6

Q ss_pred             CCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC------------------CCeEEEEeCCHHHHHHHH
Q 021344          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT------------------YSGVVALDFSENMLRQCY  207 (314)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~------------------~~~v~giD~s~~~~~~a~  207 (314)
                      +.++++....+.+.+.+.+.++.+|||.+||+|.++..+.+...                  ...++|+|+++.+++.|+
T Consensus       149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~  228 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  228 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence            44788888889999988888888999999999999988776410                  137999999999999999


Q ss_pred             HHHHhcCCCCCCC-----eEEEEecCCCCC-CCCCchhhheecchhccCCC--------------HHHHHHHHHhhcccC
Q 021344          208 DFIKQDNTILTSN-----LALVRADVCRLP-FASGFVDAVHAGAALHCWPS--------------PSNAVAEISRILRSG  267 (314)
Q Consensus       208 ~~~~~~~~~~~~~-----v~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~~d--------------~~~~l~~i~r~LkpG  267 (314)
                      .++...+.   ..     +.+.++|....+ ...++||+|+++-.+.....              ...++..+.+.||||
T Consensus       229 ~nl~l~gi---~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g  305 (541)
T 2ar0_A          229 MNCLLHDI---EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG  305 (541)
T ss_dssp             HHHHTTTC---CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             HHHHHhCC---CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence            98877653   22     788999986643 34568999998643332211              237899999999999


Q ss_pred             cEEEEEeccc
Q 021344          268 GVFVGTTFLR  277 (314)
Q Consensus       268 G~l~i~~~~~  277 (314)
                      |++.+..+..
T Consensus       306 Gr~a~V~p~~  315 (541)
T 2ar0_A          306 GRAAVVVPDN  315 (541)
T ss_dssp             EEEEEEEEHH
T ss_pred             CEEEEEecCc
Confidence            9999888543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.99  E-value=5.3e-10  Score=102.87  Aligned_cols=102  Identities=16%  Similarity=0.194  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc---------------CCCCCCCeEEEEecCCC
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------------NTILTSNLALVRADVCR  230 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~v~~~~~d~~~  230 (314)
                      ++.+|||+|||+|.++..+++..+..+|+++|+++.+++.++++++..               +.   .+++++++|+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl---~~i~v~~~Da~~  123 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE---KTIVINHDDANR  123 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS---SEEEEEESCHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC---CceEEEcCcHHH
Confidence            578999999999999999999854568999999999999999999887               52   349999999865


Q ss_pred             CCC-CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          231 LPF-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 lp~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +.. ..++||+|+..-    ...+..+++.+.+.||+||+++++.
T Consensus       124 ~~~~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          124 LMAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            421 135799999532    1234688999999999999888764

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.98  E-value=5.3e-10  Score=99.64  Aligned_cols=88  Identities=16%  Similarity=0.275  Sum_probs=72.3

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-  232 (314)
                      ..+.+.+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++++..+    .++.++++|+.+++ 
T Consensus        14 Ll~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g----~~v~~v~~d~~~l~~   89 (301)
T 1m6y_A           14 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADF   89 (301)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCHHHHHH
Confidence            3445566777778899999999999999999998656699999999999999999987754    68999999998765 


Q ss_pred             -CCC---Cchhhheecc
Q 021344          233 -FAS---GFVDAVHAGA  245 (314)
Q Consensus       233 -~~~---~~fD~V~~~~  245 (314)
                       +..   ++||.|++..
T Consensus        90 ~l~~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           90 LLKTLGIEKVDGILMDL  106 (301)
T ss_dssp             HHHHTTCSCEEEEEEEC
T ss_pred             HHHhcCCCCCCEEEEcC
Confidence             221   5799998753

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.98  E-value=7.7e-10  Score=97.10  Aligned_cols=86  Identities=16%  Similarity=0.194  Sum_probs=72.0

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .....+.+.+.+...++ +|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++..      .+++++++|+.+
T Consensus        32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~~------~~v~vi~~D~l~  102 (271)
T 3fut_A           32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLSG------LPVRLVFQDALL  102 (271)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTTT------SSEEEEESCGGG
T ss_pred             CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCC------CCEEEEECChhh
Confidence            34566778888888788 999999999999999999875  999999999999999987642      589999999988


Q ss_pred             CCCCCC-chhhheecc
Q 021344          231 LPFASG-FVDAVHAGA  245 (314)
Q Consensus       231 lp~~~~-~fD~V~~~~  245 (314)
                      +++++. .+|.|+++-
T Consensus       103 ~~~~~~~~~~~iv~Nl  118 (271)
T 3fut_A          103 YPWEEVPQGSLLVANL  118 (271)
T ss_dssp             SCGGGSCTTEEEEEEE
T ss_pred             CChhhccCccEEEecC
Confidence            877543 688877754

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.92  E-value=1.6e-09  Score=99.82  Aligned_cols=104  Identities=14%  Similarity=0.138  Sum_probs=83.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCC-eEEEEecCCCCC--CCCCchhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCRLP--FASGFVDA  240 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~-v~~~~~d~~~lp--~~~~~fD~  240 (314)
                      .++.+|||++||+|.++..+++...+ .+|+++|+++.+++.++++++..++  ..+ ++++.+|+.+.-  ...++||+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl--~~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI--PEDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC--CGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCceEEEEeCCHHHHHHHhhCCCCcE
Confidence            45789999999999999999986322 4899999999999999999998873  234 999999985431  12457999


Q ss_pred             heecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |++.-    ...+..+++.+.+.|++||+++++.
T Consensus       129 V~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          129 VDLDP----FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            99854    2234678999999999999888765

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.92  E-value=7.4e-09  Score=91.28  Aligned_cols=111  Identities=14%  Similarity=0.252  Sum_probs=85.9

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCCCeEEEEecCCCC-CCCCCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~v~~~~~d~~~l-p~~~~~fD~V  241 (314)
                      ...++||-||.|.|..++.+.+..+..+++.+|+++..++.+++.+...  +.....+++++.+|.... .-..++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            4577999999999999999999876679999999999999999987531  111347899999998663 3446789999


Q ss_pred             eecchh-----ccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          242 HAGAAL-----HCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       242 ~~~~vl-----~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +....=     .++ -...+++.+++.|+|||+++...-+
T Consensus       162 i~D~~dp~~~~~~L-~t~eFy~~~~~~L~p~Gv~v~q~~s  200 (294)
T 3o4f_A          162 ISDCTDPIGPGESL-FTSAFYEGCKRCLNPGGIFVAQNGV  200 (294)
T ss_dssp             EESCCCCCCTTCCS-SCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEeCCCcCCCchhh-cCHHHHHHHHHHhCCCCEEEEecCC
Confidence            975321     011 1147899999999999999987633

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.87  E-value=1.9e-08  Score=96.62  Aligned_cols=165  Identities=15%  Similarity=0.040  Sum_probs=114.9

Q ss_pred             hhhHHHHHHhHHHhc-----ccCCCCCchHHHHHHHHHhc----cCCCCeEEEEcCcccHHHHHHHHhC---CCCeEEEE
Q 021344          129 PFVSFLYERGWRQNF-----NRSGFPGPDEEFKMAQEYFK----SAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVAL  196 (314)
Q Consensus       129 ~~~s~~~~~~w~~~~-----~~~~~~~~~~~~~~l~~~l~----~~~~~~iLDiGcG~G~~~~~l~~~~---~~~~v~gi  196 (314)
                      +.+...|+....+..     ..+.++++....+.+.+.+.    ..++.+|||.+||+|.++..+.+..   ....++|+
T Consensus       175 D~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~  254 (542)
T 3lkd_A          175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ  254 (542)
T ss_dssp             THHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE
Confidence            445555655444322     23457889999999999887    4567899999999999988887763   24589999


Q ss_pred             eCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--C-CCCCchhhheecchh--cc-----------------CC---
Q 021344          197 DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--P-FASGFVDAVHAGAAL--HC-----------------WP---  251 (314)
Q Consensus       197 D~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p-~~~~~fD~V~~~~vl--~h-----------------~~---  251 (314)
                      |+++.+.+.|+.++...+. ...++.+.++|....  | ....+||+|+++=-+  ..                 ++   
T Consensus       255 Eid~~~~~lA~~Nl~l~gi-~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s  333 (542)
T 3lkd_A          255 ELNTSTYNLARMNMILHGV-PIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKS  333 (542)
T ss_dssp             ESCHHHHHHHHHHHHHTTC-CGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTT
T ss_pred             ECcHHHHHHHHHHHHHcCC-CcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCc
Confidence            9999999999998877663 114688999998765  3 346789999975111  00                 11   


Q ss_pred             C-HHHHHHHHHhhcc-cCcEEEEEecccCCCCCccchHHHHHHHHh
Q 021344          252 S-PSNAVAEISRILR-SGGVFVGTTFLRYTSSTSLTGRVLREVMLI  295 (314)
Q Consensus       252 d-~~~~l~~i~r~Lk-pGG~l~i~~~~~~~~~~~~~~~~l~~~~~~  295 (314)
                      + .-.++..+.+.|| |||++.+..+...-.. .-....+++++..
T Consensus       334 ~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~-~~~~~~iRk~Lle  378 (542)
T 3lkd_A          334 KADFAFLLHGYYHLKQDNGVMAIVLPHGVLFR-GNAEGTIRKALLE  378 (542)
T ss_dssp             CCHHHHHHHHHHTBCTTTCEEEEEEETHHHHC-CTHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhCCCceeEEEEecchHhhC-CchhHHHHHHHHh
Confidence            1 1258999999999 9999998886542111 1123556666543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.85  E-value=1e-08  Score=101.58  Aligned_cols=126  Identities=14%  Similarity=0.055  Sum_probs=91.0

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC----------------------------------------
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG----------------------------------------  188 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~----------------------------------------  188 (314)
                      +-.+.....+.......++..|||.+||+|.++..++..+                                        
T Consensus       173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~  252 (703)
T 3v97_A          173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL  252 (703)
T ss_dssp             SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence            3345566677777777778899999999999998887652                                        


Q ss_pred             --CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCCCchhhheecchhc-cCC---CHHHHHHHH
Q 021344          189 --TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGAALH-CWP---SPSNAVAEI  260 (314)
Q Consensus       189 --~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l--p~~~~~fD~V~~~~vl~-h~~---d~~~~l~~i  260 (314)
                        +..+++|+|+++.+++.|++++...+.  ...+++.++|+.++  |...++||+|+++=-.. .+.   +...+++.+
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~agv--~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l  330 (703)
T 3v97_A          253 AEYSSHFYGSDSDARVIQRARTNARLAGI--GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLL  330 (703)
T ss_dssp             HHCCCCEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHH
T ss_pred             ccCCccEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHH
Confidence              124799999999999999999999873  45699999999876  33344899999972211 111   223444444


Q ss_pred             ---HhhcccCcEEEEEecc
Q 021344          261 ---SRILRSGGVFVGTTFL  276 (314)
Q Consensus       261 ---~r~LkpGG~l~i~~~~  276 (314)
                         .+.+.|||.+++.+..
T Consensus       331 ~~~lk~~~~g~~~~ilt~~  349 (703)
T 3v97_A          331 GRIMKNQFGGWNLSLFSAS  349 (703)
T ss_dssp             HHHHHHHCTTCEEEEEESC
T ss_pred             HHHHHhhCCCCeEEEEeCC
Confidence               4445589999998853

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.85  E-value=4.3e-09  Score=101.15  Aligned_cols=147  Identities=14%  Similarity=0.039  Sum_probs=104.0

Q ss_pred             CCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC---------------CCeEEEEeCCHHHHHHHHHHH
Q 021344          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT---------------YSGVVALDFSENMLRQCYDFI  210 (314)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~---------------~~~v~giD~s~~~~~~a~~~~  210 (314)
                      +.++++...++++.+.+...++ +|||.+||+|.++..+.+...               ...++|+|+++.+++.|+.++
T Consensus       225 G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl  303 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNM  303 (544)
T ss_dssp             TTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHH
T ss_pred             CeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHH
Confidence            4578999999999999887655 999999999999887754310               348999999999999999988


Q ss_pred             HhcCCCCCCCeEEEEecCCCCC-CCCCchhhheecchhcc-------------------------CC---C-HHHHHHHH
Q 021344          211 KQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGAALHC-------------------------WP---S-PSNAVAEI  260 (314)
Q Consensus       211 ~~~~~~~~~~v~~~~~d~~~lp-~~~~~fD~V~~~~vl~h-------------------------~~---d-~~~~l~~i  260 (314)
                      ...++  ..++.+.++|....+ +.+.+||+|+++=-+..                         ++   + .-.++..+
T Consensus       304 ~l~gi--~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~  381 (544)
T 3khk_A          304 VIRGI--DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHM  381 (544)
T ss_dssp             HHTTC--CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHH
T ss_pred             HHhCC--CcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHH
Confidence            87763  234444788875544 45678999998522211                         11   1 12689999


Q ss_pred             HhhcccCcEEEEEecccCCCCCccchHHHHHHHHh
Q 021344          261 SRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLI  295 (314)
Q Consensus       261 ~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~~~  295 (314)
                      .+.|||||++.+..+...-....-....+++++..
T Consensus       382 l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle  416 (544)
T 3khk_A          382 LYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVE  416 (544)
T ss_dssp             HHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHH
T ss_pred             HHHhccCceEEEEecchhhhcCcchHHHHHHHHHh
Confidence            99999999999888543211111234556666543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.84  E-value=5.2e-10  Score=97.65  Aligned_cols=89  Identities=17%  Similarity=0.154  Sum_probs=67.3

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCH-------HHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE-------NMLRQCYDFIKQDNTILTSNLALVRADVC  229 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~-------~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  229 (314)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+++       .+++.|+++.+..+.  ..+++++++|+.
T Consensus        74 ~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~--~~ri~~~~~d~~  149 (258)
T 2r6z_A           74 LIAKAVNHTAHPTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPETQDT--AARINLHFGNAA  149 (258)
T ss_dssp             HHHHHTTGGGCCCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHHHHH--HTTEEEEESCHH
T ss_pred             HHHHHhCcCCcCeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHhhCC--ccCeEEEECCHH
Confidence            334444455678999999999999999999864  999999999       999999887665441  245999999987


Q ss_pred             CC-C-CCC--Cchhhheecchhcc
Q 021344          230 RL-P-FAS--GFVDAVHAGAALHC  249 (314)
Q Consensus       230 ~l-p-~~~--~~fD~V~~~~vl~h  249 (314)
                      +. + +++  ++||+|++.-.+.|
T Consensus       150 ~~l~~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          150 EQMPALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHHHHHHCCCSEEEECCCC--
T ss_pred             HHHHhhhccCCCccEEEECCCCCC
Confidence            63 3 333  68999999655544

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.83  E-value=6.9e-08  Score=80.62  Aligned_cols=111  Identities=8%  Similarity=0.073  Sum_probs=80.1

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---  231 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l---  231 (314)
                      .+++...+.  +.++|||||||  +.+..+++.. +.+|+.+|.++...+.|+++++..+.....+++++.+|+.+.   
T Consensus        21 ~~~L~~~l~--~a~~VLEiGtG--ySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~w   95 (202)
T 3cvo_A           21 AEALRMAYE--EAEVILEYGSG--GSTVVAAELP-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDW   95 (202)
T ss_dssp             HHHHHHHHH--HCSEEEEESCS--HHHHHHHTST-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGG
T ss_pred             HHHHHHHhh--CCCEEEEECch--HHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcc
Confidence            344444333  46799999985  6667777642 569999999999999999999987621147899999997542   


Q ss_pred             ------------C--------C-CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          232 ------------P--------F-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 ------------p--------~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                                  +        . ..++||+|+...-.     ....+..+.+.|+|||++++-.+
T Consensus        96 g~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~DNv  155 (202)
T 3cvo_A           96 GHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLFDDY  155 (202)
T ss_dssp             GCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEETTG
T ss_pred             cccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEEeCC
Confidence                        1        1 13689999987632     23556667799999999966543

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.83  E-value=1.6e-08  Score=87.76  Aligned_cols=76  Identities=17%  Similarity=0.388  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+++.+++.++++ .      ..+++++++|+.++
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~-~------~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI-G------DERLEVINEDASKF   88 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS-C------CTTEEEECSCTTTC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc-c------CCCeEEEEcchhhC
Confidence            4456677778887788999999999999999999985 34999999999999999876 1      25899999999998


Q ss_pred             CCCC
Q 021344          232 PFAS  235 (314)
Q Consensus       232 p~~~  235 (314)
                      ++++
T Consensus        89 ~~~~   92 (249)
T 3ftd_A           89 PFCS   92 (249)
T ss_dssp             CGGG
T ss_pred             ChhH
Confidence            8764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.82  E-value=7.9e-09  Score=100.21  Aligned_cols=99  Identities=14%  Similarity=0.140  Sum_probs=72.6

Q ss_pred             CCeEEEEcCcccHHHHHHHH---hC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          167 GGLLVDVSCGSGLFSRKFAK---SG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~---~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ...|||||||+|-+.....+   .+ ...+|++||.++ +...+++..+.++  ...+|+++.+|++++..+ +++|+|+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~--~~dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE--WGSQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT--TGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc--CCCeEEEEeCcceeccCC-cccCEEE
Confidence            35799999999988444333   32 223789999998 5567777777777  468899999999998765 6799999


Q ss_pred             ecc----hhccCCCHHHHHHHHHhhcccCcEEE
Q 021344          243 AGA----ALHCWPSPSNAVAEISRILRSGGVFV  271 (314)
Q Consensus       243 ~~~----vl~h~~d~~~~l~~i~r~LkpGG~l~  271 (314)
                      +-.    .++- .-+ ..+....|.|||||+++
T Consensus       434 SEwMG~fLl~E-~ml-evL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          434 SELLGSFADNE-LSP-ECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCCCBTTBGGG-CHH-HHHHHHGGGEEEEEEEE
T ss_pred             EEcCccccccc-CCH-HHHHHHHHhcCCCcEEc
Confidence            721    1222 123 57888899999999864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.78  E-value=1e-08  Score=90.39  Aligned_cols=77  Identities=14%  Similarity=0.209  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  229 (314)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+..  .+|+|+|+++.+++.++++.   .    .+++++++|+.
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~----~~v~~i~~D~~  100 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G----ELLELHAGDAL  100 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G----GGEEEEESCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C----CCcEEEECChh
Confidence            455667778888788899999999999999999998751  23999999999999999873   2    58999999999


Q ss_pred             CCCCCC
Q 021344          230 RLPFAS  235 (314)
Q Consensus       230 ~lp~~~  235 (314)
                      ++++++
T Consensus       101 ~~~~~~  106 (279)
T 3uzu_A          101 TFDFGS  106 (279)
T ss_dssp             GCCGGG
T ss_pred             cCChhH
Confidence            887653

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.77  E-value=5e-09  Score=90.75  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=74.6

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhh
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V  241 (314)
                      ....++.+|||+|||+|.|++.+++..+...++|+|++.+....... ...    ...++..+..++....+..+.||+|
T Consensus        70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~----~g~~ii~~~~~~dv~~l~~~~~DlV  144 (277)
T 3evf_A           70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQS----LGWNIITFKDKTDIHRLEPVKCDTL  144 (277)
T ss_dssp             TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCB----TTGGGEEEECSCCTTTSCCCCCSEE
T ss_pred             CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCc----CCCCeEEEeccceehhcCCCCccEE
Confidence            44567789999999999999988876434478888887442100000 000    0125566677766566777899999


Q ss_pred             eecchhccCCCHH-------HHHHHHHhhcccC-cEEEEEeccc
Q 021344          242 HAGAALHCWPSPS-------NAVAEISRILRSG-GVFVGTTFLR  277 (314)
Q Consensus       242 ~~~~vl~h~~d~~-------~~l~~i~r~LkpG-G~l~i~~~~~  277 (314)
                      ++..+.+ .....       .+|+.+.++|||| |.+++-.+..
T Consensus       145 lsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p  187 (277)
T 3evf_A          145 LCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP  187 (277)
T ss_dssp             EECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             EecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence            9976555 33321       3568889999999 9999987653

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.71  E-value=2.1e-08  Score=91.75  Aligned_cols=109  Identities=16%  Similarity=0.084  Sum_probs=75.1

Q ss_pred             CCeEEEEcCcccHHHHHHHHh-----------------CCCCeEEEEeCC-----------HHHHHHHHHHHHhcCCCCC
Q 021344          167 GGLLVDVSCGSGLFSRKFAKS-----------------GTYSGVVALDFS-----------ENMLRQCYDFIKQDNTILT  218 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~-----------------~~~~~v~giD~s-----------~~~~~~a~~~~~~~~~~~~  218 (314)
                      ..+|+|+||++|.++..+...                 .+..+|+..|+-           +...+.+++   ..+  ..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g--~~  127 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENG--RK  127 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTC--CC
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hcc--CC
Confidence            468999999999988777654                 244678888876           333332222   111  11


Q ss_pred             CCeEEEEecC---CCCCCCCCchhhheecchhccCCCHH---------------------------------------HH
Q 021344          219 SNLALVRADV---CRLPFASGFVDAVHAGAALHCWPSPS---------------------------------------NA  256 (314)
Q Consensus       219 ~~v~~~~~d~---~~lp~~~~~fD~V~~~~vl~h~~d~~---------------------------------------~~  256 (314)
                      .+..|+.+.-   ....|++++||+|+++.+|||+.+..                                       .+
T Consensus       128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F  207 (384)
T 2efj_A          128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF  207 (384)
T ss_dssp             TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            2345555543   34568899999999999999986542                                       12


Q ss_pred             HHHHHhhcccCcEEEEEecccCCC
Q 021344          257 VAEISRILRSGGVFVGTTFLRYTS  280 (314)
Q Consensus       257 l~~i~r~LkpGG~l~i~~~~~~~~  280 (314)
                      |+..++.|+|||+++++...+...
T Consensus       208 L~~Ra~eL~pGG~mvl~~~gr~~~  231 (384)
T 2efj_A          208 LRIHSEELISRGRMLLTFICKEDE  231 (384)
T ss_dssp             HHHHHHHEEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHhccCCeEEEEEecCCCc
Confidence            666689999999999999887553

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.68  E-value=6.6e-09  Score=90.26  Aligned_cols=75  Identities=8%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ...+.+.+.+...++.+|||||||+|.++. +.+ +...+|+++|+++.+++.+++++..     ..+++++++|+.+++
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~-----~~~v~~i~~D~~~~~   80 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTFN   80 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGCC
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc-----CCceEEEECchhhCC
Confidence            445567777777788899999999999999 654 5422399999999999999986543     147999999998877


Q ss_pred             CC
Q 021344          233 FA  234 (314)
Q Consensus       233 ~~  234 (314)
                      ++
T Consensus        81 ~~   82 (252)
T 1qyr_A           81 FG   82 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.68  E-value=5.9e-08  Score=88.72  Aligned_cols=113  Identities=17%  Similarity=0.140  Sum_probs=76.6

Q ss_pred             CCeEEEEcCcccHHHHHHH--------HhC-------CCCeEEEEeCCHHHHHHHHHHHHhcC-----------CC-CCC
Q 021344          167 GGLLVDVSCGSGLFSRKFA--------KSG-------TYSGVVALDFSENMLRQCYDFIKQDN-----------TI-LTS  219 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~--------~~~-------~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~-~~~  219 (314)
                      ..+|+|+|||+|.++..+.        +..       +..+|+.-|+-.+.....=+.+....           .. ...
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            4689999999999887762        221       45688888876655433333332210           00 001


Q ss_pred             CeEEEEecCCCCCCCCCchhhheecchhccCCC--------------------------------------HHHHHHHHH
Q 021344          220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPS--------------------------------------PSNAVAEIS  261 (314)
Q Consensus       220 ~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d--------------------------------------~~~~l~~i~  261 (314)
                      =+..+-+.+....+++++||+|+++.+||++.+                                      ...+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            123333445455678999999999999999873                                      334688899


Q ss_pred             hhcccCcEEEEEecccCC
Q 021344          262 RILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       262 r~LkpGG~l~i~~~~~~~  279 (314)
                      +.|+|||+++++...+..
T Consensus       213 ~eL~pGG~mvl~~~gr~~  230 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTS  230 (374)
T ss_dssp             HHEEEEEEEEEEEEECCC
T ss_pred             HHhCCCCEEEEEEecCCC
Confidence            999999999999987754

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.63  E-value=4.6e-08  Score=94.94  Aligned_cols=101  Identities=10%  Similarity=0.112  Sum_probs=72.2

Q ss_pred             CCeEEEEcCcccHHHHHHHH----hC---------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          167 GGLLVDVSCGSGLFSRKFAK----SG---------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~----~~---------~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ...|||||||+|-+......    .+         ...+|++||.++.++...+.+.. .+  ...+|+++.+|++++..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng--~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT--WKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT--TTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC--CCCeEEEEeCchhhccc
Confidence            45799999999998643211    12         23489999999988776666555 34  35779999999998766


Q ss_pred             C-----CCchhhheecchhccCCC---HHHHHHHHHhhcccCcEEE
Q 021344          234 A-----SGFVDAVHAGAALHCWPS---PSNAVAEISRILRSGGVFV  271 (314)
Q Consensus       234 ~-----~~~fD~V~~~~vl~h~~d---~~~~l~~i~r~LkpGG~l~  271 (314)
                      +     .+++|+|++-.. ..+.+   -...|..+.+.|||||+++
T Consensus       487 p~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence            3     578999997432 22221   2357888889999999865

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.62  E-value=2.5e-08  Score=92.19  Aligned_cols=74  Identities=12%  Similarity=0.159  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCCCeEEEEecCCCC-CC-CCCchhhh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PF-ASGFVDAV  241 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~v~~~~~d~~~l-p~-~~~~fD~V  241 (314)
                      ++.+|||+|||+|..+..+++.+.  +|+++|+|+.+++.|+++++..  +.   .+++++++|+.+. +. .+++||+|
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~~~gl---~~i~~i~~Da~~~L~~~~~~~fDvV  167 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLLLNEG---KDVNILTGDFKEYLPLIKTFHPDYI  167 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHSCTT---CEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHhccCC---CcEEEEECcHHHhhhhccCCCceEE
Confidence            378999999999999999998865  9999999999999999999876  52   6899999999763 32 23579999


Q ss_pred             eec
Q 021344          242 HAG  244 (314)
Q Consensus       242 ~~~  244 (314)
                      ++.
T Consensus       168 ~lD  170 (410)
T 3ll7_A          168 YVD  170 (410)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.62  E-value=1.8e-08  Score=87.59  Aligned_cols=109  Identities=17%  Similarity=0.056  Sum_probs=72.2

Q ss_pred             HHHHHhccCCC--CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCC----CCCeEEEEecC
Q 021344          157 MAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--TIL----TSNLALVRADV  228 (314)
Q Consensus       157 ~l~~~l~~~~~--~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~----~~~v~~~~~d~  228 (314)
                      .+.+.+...++  .+|||+|||+|..+..++..+.  +|+++|.++.+.+.+++.++...  ...    ..+++++++|.
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            45556655566  8999999999999999999875  89999999988777766554321  000    14699999998


Q ss_pred             CC-CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCc
Q 021344          229 CR-LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG  268 (314)
Q Consensus       229 ~~-lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG  268 (314)
                      .+ ++...++||+|++.-.+.+- .....+++..++|++.+
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~~~-~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFPHK-QKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCC-CC-----HHHHHHHHHS
T ss_pred             HHHHHhCcccCCEEEEcCCCCCc-ccchHHHHHHHHHHHhh
Confidence            65 33223469999997666553 22244555555555543

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.50  E-value=4.2e-07  Score=89.59  Aligned_cols=149  Identities=15%  Similarity=0.138  Sum_probs=94.5

Q ss_pred             CCCCCchHHHHHHHHH----hcc--CCCCeEEEEcCcccHHHHHHHHhCC---CCeEEEEeCCHHHHHHH--HHHHHhcC
Q 021344          146 SGFPGPDEEFKMAQEY----FKS--AQGGLLVDVSCGSGLFSRKFAKSGT---YSGVVALDFSENMLRQC--YDFIKQDN  214 (314)
Q Consensus       146 ~~~~~~~~~~~~l~~~----l~~--~~~~~iLDiGcG~G~~~~~l~~~~~---~~~v~giD~s~~~~~~a--~~~~~~~~  214 (314)
                      +.++.+....+.+...    +..  .++.+|||.|||+|.++..+++...   ..+++|+|+++.+++.|  +.++....
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            4467888888887776    322  3577999999999999999988753   34799999999999999  44433211


Q ss_pred             CCC-CCCeEEEEecCCCC-CCCCCchhhheecchhcc-CC---------------------------C-HHHHHHHHHhh
Q 021344          215 TIL-TSNLALVRADVCRL-PFASGFVDAVHAGAALHC-WP---------------------------S-PSNAVAEISRI  263 (314)
Q Consensus       215 ~~~-~~~v~~~~~d~~~l-p~~~~~fD~V~~~~vl~h-~~---------------------------d-~~~~l~~i~r~  263 (314)
                      ... .....+...|+... +...++||+|+++=-.-. ..                           + ...++..+.+.
T Consensus       375 LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~l  454 (878)
T 3s1s_A          375 LVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTEL  454 (878)
T ss_dssp             TCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHH
T ss_pred             hhcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHh
Confidence            100 12234555555442 234568999998522200 00                           1 23578889999


Q ss_pred             cccCcEEEEEecccCCCCCccchHHHHHHHH
Q 021344          264 LRSGGVFVGTTFLRYTSSTSLTGRVLREVML  294 (314)
Q Consensus       264 LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~~  294 (314)
                      ||+||++.+..+...-....-....+++++.
T Consensus       455 LKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LL  485 (878)
T 3s1s_A          455 VQDGTVISAIMPKQYLTAQGNESKAFREFLV  485 (878)
T ss_dssp             SCTTCEEEEEEETHHHHCCSHHHHHHHHHHT
T ss_pred             cCCCcEEEEEEChHHhccCChHHHHHHHHHH
Confidence            9999999999865421101111345666554

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.50  E-value=4.4e-08  Score=84.97  Aligned_cols=110  Identities=17%  Similarity=0.109  Sum_probs=72.5

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhh
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V  241 (314)
                      ....++.+|||+|||+|.|++.+++..+...++|+|++.++...+... ..    ...++..+..+.....+..+++|+|
T Consensus        86 ~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~----~g~~ii~~~~~~dv~~l~~~~~DvV  160 (282)
T 3gcz_A           86 GYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TT----LGWNLIRFKDKTDVFNMEVIPGDTL  160 (282)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CB----TTGGGEEEECSCCGGGSCCCCCSEE
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-cc----CCCceEEeeCCcchhhcCCCCcCEE
Confidence            355678899999999999999988764445789999986532111100 00    0123444444333334456789999


Q ss_pred             eecchhccCCCHH-------HHHHHHHhhcccC--cEEEEEeccc
Q 021344          242 HAGAALHCWPSPS-------NAVAEISRILRSG--GVFVGTTFLR  277 (314)
Q Consensus       242 ~~~~vl~h~~d~~-------~~l~~i~r~LkpG--G~l~i~~~~~  277 (314)
                      ++..+.. .....       .+|+-+.++||||  |.|++-.+..
T Consensus       161 LSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p  204 (282)
T 3gcz_A          161 LCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP  204 (282)
T ss_dssp             EECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred             EecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence            9987655 43321       3577778999999  9999988663

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.49  E-value=7.4e-08  Score=87.47  Aligned_cols=112  Identities=13%  Similarity=0.135  Sum_probs=80.4

Q ss_pred             CCeEEEEcCcccHHHHHHHHh----------------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE---ec
Q 021344          167 GGLLVDVSCGSGLFSRKFAKS----------------GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR---AD  227 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~----------------~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~---~d  227 (314)
                      .-+|+|+||++|.++..+...                .+..+|+..|.-.+....+-+.+....  ...+..|+.   +.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~--~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--DVDGVCFINGVPGS  129 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--SCTTCEEEEEEESC
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc--ccCCCEEEEecchh
Confidence            457999999999866544332                345688999998877777666544311  001234444   44


Q ss_pred             CCCCCCCCCchhhheecchhccCCCH---------------------------------HHHHHHHHhhcccCcEEEEEe
Q 021344          228 VCRLPFASGFVDAVHAGAALHCWPSP---------------------------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~---------------------------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +....|+++++|+|+++.+|||+.+.                                 ..+|+..++.|+|||++++..
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            55567889999999999999998652                                 135888999999999999999


Q ss_pred             cccCCC
Q 021344          275 FLRYTS  280 (314)
Q Consensus       275 ~~~~~~  280 (314)
                      ..+...
T Consensus       210 ~gr~~~  215 (359)
T 1m6e_X          210 LGRRSE  215 (359)
T ss_dssp             EECSSS
T ss_pred             ecCCCC
Confidence            887543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.49  E-value=4e-07  Score=82.82  Aligned_cols=130  Identities=12%  Similarity=0.050  Sum_probs=97.5

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCCCeEEEEecCCCCC-
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRLP-  232 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~v~~~~~d~~~lp-  232 (314)
                      +....+...++.+|||+.+|.|.-+.+++..+....++++|+++..+...+++++..+..   ...++.+...|...++ 
T Consensus       139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~  218 (359)
T 4fzv_A          139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE  218 (359)
T ss_dssp             HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred             HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence            445567788899999999999999999988876668999999999999999988875421   1257888888887654 


Q ss_pred             CCCCchhhheec----c----hhccCCC------H----------HHHHHHHHhhcccCcEEEEEecccCCCCCccch
Q 021344          233 FASGFVDAVHAG----A----ALHCWPS------P----------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG  286 (314)
Q Consensus       233 ~~~~~fD~V~~~----~----vl~h~~d------~----------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~  286 (314)
                      ...+.||.|++.    .    ++..-++      +          ..+|....+.|||||+|+-+|-+-.+..+....
T Consensus       219 ~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV  296 (359)
T 4fzv_A          219 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV  296 (359)
T ss_dssp             HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHH
T ss_pred             hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHH
Confidence            345689999952    2    2221111      1          257888999999999999999887766664433

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1

Probab=98.45  E-value=6.9e-08  Score=65.15  Aligned_cols=46  Identities=15%  Similarity=0.157  Sum_probs=38.7

Q ss_pred             CCCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (314)
                      ..++++||+|+++|.....         .+.+.|+.|+..|++++|+++++....
T Consensus         7 LLeiL~CP~ck~~L~~~~~---------~g~LvC~~c~~~YPI~dGIPvmL~~Ea   52 (67)
T 2jny_A            7 LLEVLACPKDKGPLRYLES---------EQLLVNERLNLAYRIDDGIPVLLIDEA   52 (67)
T ss_dssp             GTCCCBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCSSCC
T ss_pred             HHHHhCCCCCCCcCeEeCC---------CCEEEcCCCCccccCCCCEeeeChhHh
Confidence            4578999999999876432         378999999999999999999997643

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}

Probab=98.43  E-value=8.5e-08  Score=65.02  Aligned_cols=46  Identities=17%  Similarity=0.214  Sum_probs=38.6

Q ss_pred             CCCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (314)
                      .+++++||.|+++|.....         .+.+.|+.|+..|++++|+++++....
T Consensus         5 LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~Ea   50 (68)
T 2jr6_A            5 FLDILVCPVTKGRLEYHQD---------KQELWSRQAKLAYPIKDGIPYMLENEA   50 (68)
T ss_dssp             SSCCCBCSSSCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCTTTC
T ss_pred             HhhheECCCCCCcCeEeCC---------CCEEEcCCCCcEecCCCCeeeeChhhc
Confidence            4678999999999876432         378999999999999999999997643

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}

Probab=98.42  E-value=9e-08  Score=65.29  Aligned_cols=46  Identities=15%  Similarity=0.314  Sum_probs=38.9

Q ss_pred             CCCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (314)
                      .+++++||.|+++|.....         .+.+.|+.|+..|++++|+++++....
T Consensus         5 LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~Ea   50 (70)
T 2js4_A            5 LLDILVCPVCKGRLEFQRA---------QAELVCNADRLAFPVRDGVPIMLEAEA   50 (70)
T ss_dssp             CCCCCBCTTTCCBEEEETT---------TTEEEETTTTEEEEEETTEECCCGGGS
T ss_pred             HhhheECCCCCCcCEEeCC---------CCEEEcCCCCceecCCCCeeeeChhhc
Confidence            4578999999999876432         378999999999999999999998743

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1

Probab=98.41  E-value=8.2e-08  Score=65.09  Aligned_cols=46  Identities=17%  Similarity=0.399  Sum_probs=38.5

Q ss_pred             CCCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (314)
                      .+++++||.|+++|.....         .+.+.|+.|+..|++++|+++++....
T Consensus         5 LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~Ea   50 (68)
T 2hf1_A            5 FLEILVCPLCKGPLVFDKS---------KDELICKGDRLAFPIKDGIPMMLESEA   50 (68)
T ss_dssp             CEEECBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCGGGC
T ss_pred             HhhheECCCCCCcCeEeCC---------CCEEEcCCCCcEecCCCCeeeeChhhc
Confidence            3578999999999876432         378999999999999999999997643

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.41  E-value=1.7e-07  Score=81.45  Aligned_cols=108  Identities=17%  Similarity=0.091  Sum_probs=71.5

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHh-------CCC-----CeEEEEeCCH---HHHH-----------HHHHHHHhcC----
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKS-------GTY-----SGVVALDFSE---NMLR-----------QCYDFIKQDN----  214 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~-------~~~-----~~v~giD~s~---~~~~-----------~a~~~~~~~~----  214 (314)
                      .+..+|||||+|+|..+..+.+.       .+.     .+++++|..+   +.+.           .+++.++.-.    
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            34578999999999988776543       442     4899999876   4443           4555554300    


Q ss_pred             ------CC-CCCCeEEEEecCCC-CCCCC----Cchhhheecc-hhccCCC--HHHHHHHHHhhcccCcEEEE
Q 021344          215 ------TI-LTSNLALVRADVCR-LPFAS----GFVDAVHAGA-ALHCWPS--PSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       215 ------~~-~~~~v~~~~~d~~~-lp~~~----~~fD~V~~~~-vl~h~~d--~~~~l~~i~r~LkpGG~l~i  272 (314)
                            .. ...+++++.+|+.+ ++..+    ..||+|+... .-..-++  -..+++.+.++|||||+|+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                  00 12568899999865 44322    2799999853 2111111  24789999999999999885

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1

Probab=98.40  E-value=9.7e-08  Score=64.93  Aligned_cols=46  Identities=20%  Similarity=0.387  Sum_probs=38.3

Q ss_pred             CCCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (314)
                      .+++++||.|+++|.....         .+.+.|+.|+..|++++|+++++....
T Consensus         5 LLeiL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~ea   50 (69)
T 2pk7_A            5 LLDILACPICKGPLKLSAD---------KTELISKGAGLAYPIRDGIPVMLESEA   50 (69)
T ss_dssp             GGGTCCCTTTCCCCEECTT---------SSEEEETTTTEEEEEETTEECCCGGGC
T ss_pred             HHhheeCCCCCCcCeEeCC---------CCEEEcCCCCcEecCcCCeeeeChhhc
Confidence            3578999999999876432         378999999999999999999997643

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.34  E-value=6.8e-07  Score=78.55  Aligned_cols=109  Identities=12%  Similarity=0.083  Sum_probs=80.7

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhC-----CCCeEEEEeCCHH--------------------------HHHHHHHHHHh
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSEN--------------------------MLRQCYDFIKQ  212 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~~--------------------------~~~~a~~~~~~  212 (314)
                      ....+.|||+|+..|..+..++...     ++.+++++|..+.                          .++.++++++.
T Consensus       104 ~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~  183 (282)
T 2wk1_A          104 NNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN  183 (282)
T ss_dssp             TTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred             cCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence            3456799999999999888776542     3668999996421                          36678888888


Q ss_pred             cCCCCCCCeEEEEecCCC-CC-CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          213 DNTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       213 ~~~~~~~~v~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .+. ...+++++.+|+.+ +| +++++||+|+...-.  .......|+.+.+.|+|||++++-++
T Consensus       184 ~gl-~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          184 YDL-LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             TTC-CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             cCC-CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            762 13789999999854 33 335689999987532  11234679999999999999988775

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.34  E-value=9.4e-07  Score=80.00  Aligned_cols=88  Identities=17%  Similarity=0.193  Sum_probs=68.6

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ..+|.++||+||++|.++..+.+++.  +|++||+.+-. ....         ...+|.++++|+.....+.+.||+|+|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~l~-~~l~---------~~~~V~~~~~d~~~~~~~~~~~D~vvs  276 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGPMA-QSLM---------DTGQVTWLREDGFKFRPTRSNISWMVC  276 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSCCC-HHHH---------TTTCEEEECSCTTTCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhhcC-hhhc---------cCCCeEEEeCccccccCCCCCcCEEEE
Confidence            35689999999999999999999976  99999987521 1111         137899999999887766778999999


Q ss_pred             cchhccCCCHHHHHHHHHhhcccC
Q 021344          244 GAALHCWPSPSNAVAEISRILRSG  267 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~~i~r~LkpG  267 (314)
                      ..+    .+|...+.-+.+.|..|
T Consensus       277 Dm~----~~p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          277 DMV----EKPAKVAALMAQWLVNG  296 (375)
T ss_dssp             CCS----SCHHHHHHHHHHHHHTT
T ss_pred             cCC----CChHHhHHHHHHHHhcc
Confidence            765    45777777777766665

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.30  E-value=4.9e-06  Score=79.74  Aligned_cols=163  Identities=17%  Similarity=0.140  Sum_probs=109.4

Q ss_pred             hhhHHHHHHhHHHhc----ccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-------------CCC
Q 021344          129 PFVSFLYERGWRQNF----NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-------------TYS  191 (314)
Q Consensus       129 ~~~s~~~~~~w~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-------------~~~  191 (314)
                      +.....|+...++..    ..+.+++|..+++++.+.+.+.++.+|+|.+||+|.|+..+.++.             ...
T Consensus       176 d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~  255 (530)
T 3ufb_A          176 HTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQES  255 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhh
Confidence            344555665544321    124489999999999999999889999999999999987765531             124


Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC----CCchhhheecchhc---------cCC------C
Q 021344          192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----SGFVDAVHAGAALH---------CWP------S  252 (314)
Q Consensus       192 ~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~----~~~fD~V~~~~vl~---------h~~------d  252 (314)
                      .++|+|+++.+...|+-++--++.   ....+..+|....|..    ..+||+|+++=-+.         .++      +
T Consensus       256 ~i~G~E~~~~~~~la~mNl~lhg~---~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~  332 (530)
T 3ufb_A          256 SIFGGEAKSLPYLLVQMNLLLHGL---EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAE  332 (530)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHTC---SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCB
T ss_pred             hhhhhhccHHHHHHHHHHHHhcCC---ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccch
Confidence            699999999999999987777663   3456777887655432    34799999853221         111      1


Q ss_pred             H-HHHHHHHHhhcc-------cCcEEEEEecccCCCCCccchHHHHHHHHh
Q 021344          253 P-SNAVAEISRILR-------SGGVFVGTTFLRYTSSTSLTGRVLREVMLI  295 (314)
Q Consensus       253 ~-~~~l~~i~r~Lk-------pGG~l~i~~~~~~~~~~~~~~~~l~~~~~~  295 (314)
                      . ..++..+.+.||       +||++.+..+...-.. .-....+++++..
T Consensus       333 ~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~-~~~~~~iRk~Lle  382 (530)
T 3ufb_A          333 TAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFS-DGISARIKEELLK  382 (530)
T ss_dssp             HHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHC-CTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhc-cchHHHHHHHHhh
Confidence            1 246788888887       7999999886532111 1123445666543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.28  E-value=1.3e-06  Score=79.44  Aligned_cols=108  Identities=12%  Similarity=0.156  Sum_probs=78.9

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-----CCCCCCeEEEEecCCCC----CCCCC
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-----TILTSNLALVRADVCRL----PFASG  236 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----~~~~~~v~~~~~d~~~l----p~~~~  236 (314)
                      ++++||-||.|.|..++++.+... .+++.+|+++..++.+++.+....     .+...+++++.+|....    .-..+
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            467999999999999999998764 689999999999999999764311     01124688999997542    12346


Q ss_pred             chhhheecchhcc-CCCH---------HHHHHHHHhhcccCcEEEEEe
Q 021344          237 FVDAVHAGAALHC-WPSP---------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       237 ~fD~V~~~~vl~h-~~d~---------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +||+|+....-.. -.+|         ..+++.+.++|+|||+++...
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            7999997532111 1122         367899999999999998765

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}

Probab=98.25  E-value=4e-07  Score=59.28  Aligned_cols=43  Identities=26%  Similarity=0.580  Sum_probs=37.2

Q ss_pred             CCCeeeccCCCccchhcCCCCccccccccCceecC--CCCccccCccceeeeeccc
Q 021344           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS  110 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~--~C~~~~~~~~g~~~~~~~~  110 (314)
                      ..++++||.|+++|....           +.+.|.  .|+..|++++|++.++.+.
T Consensus         7 lL~iL~CP~c~~~L~~~~-----------~~L~C~~~~c~~~YPI~dGIPvlL~~e   51 (56)
T 2kpi_A            7 LLEILACPACHAPLEERD-----------AELICTGQDCGLAYPVRDGIPVLLVDE   51 (56)
T ss_dssp             CTTSCCCSSSCSCEEEET-----------TEEEECSSSCCCEEEEETTEECCCTTT
T ss_pred             HHhheeCCCCCCcceecC-----------CEEEcCCcCCCcEEeeECCEeeeCHHH
Confidence            457899999999986643           689999  9999999999999998754

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.22  E-value=1.8e-06  Score=75.25  Aligned_cols=80  Identities=20%  Similarity=0.325  Sum_probs=64.8

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--  232 (314)
                      .+.+.+.+...+++.+||.+||.|..+..+++.  +.+|+|+|.++.+++.+++ ++.      .++.++++++.+++  
T Consensus        11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~~   81 (285)
T 1wg8_A           11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKRH   81 (285)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHHH
Confidence            345666777778899999999999999999998  3499999999999999998 532      58999999998764  


Q ss_pred             ---CCCCchhhhee
Q 021344          233 ---FASGFVDAVHA  243 (314)
Q Consensus       233 ---~~~~~fD~V~~  243 (314)
                         ...++||.|++
T Consensus        82 L~~~g~~~vDgIL~   95 (285)
T 1wg8_A           82 LAALGVERVDGILA   95 (285)
T ss_dssp             HHHTTCSCEEEEEE
T ss_pred             HHHcCCCCcCEEEe
Confidence               12246888886

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.20  E-value=7.1e-06  Score=71.58  Aligned_cols=107  Identities=13%  Similarity=0.139  Sum_probs=68.3

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ..++.+|||+||++|.|+..+.+...-..|+|+|+...+...... ...    ...++.....+.....+..+.+|+|++
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~----~~~~iv~~~~~~di~~l~~~~~DlVls  153 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT----LGWNIVKFKDKSNVFTMPTEPSDTLLC  153 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB----TTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc----cCCceEEeecCceeeecCCCCcCEEee
Confidence            446889999999999999999986434478899997532100000 000    011333333333323344678999999


Q ss_pred             cchhccCCCH-------HHHHHHHHhhcccC-cEEEEEecc
Q 021344          244 GAALHCWPSP-------SNAVAEISRILRSG-GVFVGTTFL  276 (314)
Q Consensus       244 ~~vl~h~~d~-------~~~l~~i~r~LkpG-G~l~i~~~~  276 (314)
                      ...-. ...+       ..+|+-+.++|+|| |.|++-.+.
T Consensus       154 D~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          154 DIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             cCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            76544 4333       24577778999999 999998866

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.16  E-value=2.5e-06  Score=66.61  Aligned_cols=87  Identities=16%  Similarity=0.145  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCccc-HHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC--Cchhhh
Q 021344          166 QGGLLVDVSCGSG-LFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS--GFVDAV  241 (314)
Q Consensus       166 ~~~~iLDiGcG~G-~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~--~~fD~V  241 (314)
                      ++.+|||||||.| ..+..|++ .+.  .|+++|+++.++                  .+++.|+.+ |..+  +.||+|
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av------------------~~v~dDiF~-P~~~~Y~~~DLI   93 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHG------------------GIVRDDITS-PRMEIYRGAALI   93 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSST------------------TEECCCSSS-CCHHHHTTEEEE
T ss_pred             CCCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCcccc------------------ceEEccCCC-CcccccCCcCEE
Confidence            3579999999999 69999997 665  899999988432                  278889877 3222  379999


Q ss_pred             eecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .+..-   -++.+..+-++++.  -|.-+++......
T Consensus        94 YsirP---P~El~~~i~~lA~~--v~adliI~pL~~E  125 (153)
T 2k4m_A           94 YSIRP---PAEIHSSLMRVADA--VGARLIIKPLTGE  125 (153)
T ss_dssp             EEESC---CTTTHHHHHHHHHH--HTCEEEEECBTTB
T ss_pred             EEcCC---CHHHHHHHHHHHHH--cCCCEEEEcCCCC
Confidence            87543   12334445555543  3677777766543

>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}

Probab=98.09  E-value=1.1e-06  Score=63.45  Aligned_cols=54  Identities=15%  Similarity=0.104  Sum_probs=41.6

Q ss_pred             CCCeeeccCCCccchhcCC------------------CCccccccccCceecCCCCccccCccceeeeeccc
Q 021344           57 EGDLFSCPICYEPLIRKGP------------------TGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~------------------~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  110 (314)
                      .+++|+||.|+++|.....                  .+...+.+..+.+.|+.|+..|++++|+++++...
T Consensus         5 LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~e   76 (97)
T 2k5r_A            5 LLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPEE   76 (97)
T ss_dssp             TCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGGG
T ss_pred             HhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChHH
Confidence            4678999999998765332                  11233455578899999999999999999999763

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.03  E-value=2.2e-05  Score=68.21  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cCCCCCCCCC
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASG  236 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~~~lp~~~~  236 (314)
                      +.+.....++.+|||+||++|.|+..++.......|+|+|+...-.+.= ...+..+   ...+.+..+ |+..++.  .
T Consensus        86 i~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~---w~lV~~~~~~Dv~~l~~--~  159 (321)
T 3lkz_A           86 LVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYG---WNIVTMKSGVDVFYRPS--E  159 (321)
T ss_dssp             HHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTT---GGGEEEECSCCTTSSCC--C
T ss_pred             HHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcC---CcceEEEeccCHhhCCC--C
Confidence            3333555678899999999999999777765445799999975411000 0000000   134778877 8777663  5


Q ss_pred             chhhheecchhccCCCHH-------HHHHHHHhhcccC-cEEEEEecc
Q 021344          237 FVDAVHAGAALHCWPSPS-------NAVAEISRILRSG-GVFVGTTFL  276 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~-------~~l~~i~r~LkpG-G~l~i~~~~  276 (314)
                      .+|+|+|.-. +--+++.       ++|+-+.+.|++| |-+++-.+.
T Consensus       160 ~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~  206 (321)
T 3lkz_A          160 CCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC  206 (321)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence            6999999776 6666664       3566667889998 888887744

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.98  E-value=2.4e-05  Score=69.32  Aligned_cols=60  Identities=15%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  213 (314)
                      +.+.++.+.+... .++..|||++||+|..+..+++.+.  +++|+|+++.+++.|+++++..
T Consensus       221 p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          221 PLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            4566777776665 5788999999999999999999876  9999999999999999998775

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.90  E-value=4.7e-05  Score=64.11  Aligned_cols=112  Identities=18%  Similarity=0.141  Sum_probs=73.2

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cCCCCCCCCC
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASG  236 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~~~lp~~~~  236 (314)
                      +.+.....++.+|||+||++|.|+..++.......|+|+|+-..-.+. -...+..   ....++|..+ |+..++  ..
T Consensus        70 i~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~---gwn~v~fk~gvDv~~~~--~~  143 (267)
T 3p8z_A           70 FVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTY---GWNIVKLMSGKDVFYLP--PE  143 (267)
T ss_dssp             HHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCT---TTTSEEEECSCCGGGCC--CC
T ss_pred             HHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhc---CcCceEEEeccceeecC--Cc
Confidence            333335667889999999999999988777544589999996532100 0000011   1257899998 876555  35


Q ss_pred             chhhheecchhccCCCHH-------HHHHHHHhhcccCcEEEEEeccc
Q 021344          237 FVDAVHAGAALHCWPSPS-------NAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~-------~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .+|.|+|.-.= --+++.       ++|+-+.+.|++ |-+++-.+..
T Consensus       144 ~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p  189 (267)
T 3p8z_A          144 KCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP  189 (267)
T ss_dssp             CCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred             cccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence            69999986442 333432       356666788998 7888866443

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.86  E-value=1.3e-05  Score=68.55  Aligned_cols=103  Identities=19%  Similarity=0.208  Sum_probs=63.6

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-CCCe---EEEEe-cCCCCCCCCCc
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNL---ALVRA-DVCRLPFASGF  237 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~~~v---~~~~~-d~~~lp~~~~~  237 (314)
                      -.+++.+|||+||+.|.|++.+++.-.-..|.|.++..+. .       ...... ..++   .+.++ |+.+++  ...
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-------~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~  139 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-------EEPMLMQSYGWNIVTMKSGVDVFYKP--SEI  139 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-------CCCCCCCSTTGGGEEEECSCCGGGSC--CCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-------cCCCcccCCCceEEEeeccCCccCCC--CCC
Confidence            4567999999999999999999886211133444443220 0       000000 0233   44446 887643  457


Q ss_pred             hhhheecchhccCCCHH-------HHHHHHHhhcccCc-EEEEEecc
Q 021344          238 VDAVHAGAALHCWPSPS-------NAVAEISRILRSGG-VFVGTTFL  276 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~-------~~l~~i~r~LkpGG-~l~i~~~~  276 (314)
                      +|+|+|...=. ..++.       .+|+-+.++|+||| .|++-.+.
T Consensus       140 ~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          140 SDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             CCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence            99999865432 22221       25666778999999 89887765

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.47  E-value=7.2e-05  Score=66.66  Aligned_cols=83  Identities=19%  Similarity=0.284  Sum_probs=64.2

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-  232 (314)
                      .+.+.+.+...+++.++|..+|.|..+..+++. ++..+|+|+|.++.+++.++ ++  .    ..++.++++++.++. 
T Consensus        46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~----~~Rv~lv~~nF~~l~~  118 (347)
T 3tka_A           46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D----DPRFSIIHGPFSALGE  118 (347)
T ss_dssp             THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C----CTTEEEEESCGGGHHH
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c----CCcEEEEeCCHHHHHH
Confidence            345666777788999999999999999999887 56779999999999999884 33  1    268999999987653 


Q ss_pred             -CC----CCchhhheec
Q 021344          233 -FA----SGFVDAVHAG  244 (314)
Q Consensus       233 -~~----~~~fD~V~~~  244 (314)
                       +.    .+++|.|++.
T Consensus       119 ~L~~~g~~~~vDgILfD  135 (347)
T 3tka_A          119 YVAERDLIGKIDGILLD  135 (347)
T ss_dssp             HHHHTTCTTCEEEEEEE
T ss_pred             HHHhcCCCCcccEEEEC
Confidence             11    1257777763

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.45  E-value=0.00039  Score=60.24  Aligned_cols=61  Identities=18%  Similarity=0.188  Sum_probs=51.0

Q ss_pred             CchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  213 (314)
                      -+..+++.+.+... .++..|||..||+|..+..+.+.+.  +++|+|+++..++.++++++..
T Consensus       197 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhc
Confidence            34566666666654 5688999999999999999999876  9999999999999999998754

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.43  E-value=0.00053  Score=61.99  Aligned_cols=75  Identities=12%  Similarity=0.088  Sum_probs=59.1

Q ss_pred             chHHHHHHHHHhccCC------CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEE
Q 021344          151 PDEEFKMAQEYFKSAQ------GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~------~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~  224 (314)
                      .....+.+.+.+...+      +..|||||.|.|.++..|++.....+|+++|+++..+...++.. .     ..+++++
T Consensus        37 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii  110 (353)
T 1i4w_A           37 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQIL  110 (353)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEE
T ss_pred             CHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEE
Confidence            3455667777766543      58899999999999999998732348999999999999888865 2     2689999


Q ss_pred             EecCCCC
Q 021344          225 RADVCRL  231 (314)
Q Consensus       225 ~~d~~~l  231 (314)
                      .+|+.++
T Consensus       111 ~~D~l~~  117 (353)
T 1i4w_A          111 KRDPYDW  117 (353)
T ss_dssp             CSCTTCH
T ss_pred             ECCccch
Confidence            9999654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.31  E-value=2.5e-05  Score=87.11  Aligned_cols=104  Identities=20%  Similarity=0.202  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-CCCCCchh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVD  239 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p~~~~~fD  239 (314)
                      +..+||+||.|+|..+..+.+...     ..+++..|+|+...+.++++++..      ++..-..|.... ++..++||
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~yd 1313 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKAD 1313 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----CC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCcee
Confidence            456899999999976555443321     237889999988887777766542      222221233221 34456799


Q ss_pred             hheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +|++..++|-.++....|++++++|||||++++.+.
T Consensus      1314 lvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1314 LLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             EEEEECC--------------------CCEEEEEEC
T ss_pred             EEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999999888999999999999999999988764

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.08  E-value=0.0067  Score=54.43  Aligned_cols=118  Identities=14%  Similarity=0.176  Sum_probs=82.3

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC------------------CCCC
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT------------------ILTS  219 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~------------------~~~~  219 (314)
                      +.+++...+...|+.+|||.......+...+++..++-+|. +..++.-++.+...+.                  ....
T Consensus        89 v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (334)
T 1rjd_A           89 ILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQG  167 (334)
T ss_dssp             HHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECS
T ss_pred             HHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCC
Confidence            33444334567899999999988888887655567888887 8888777777766410                  0126


Q ss_pred             CeEEEEecCCCCCC---------CCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          220 NLALVRADVCRLPF---------ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       220 ~v~~~~~d~~~lp~---------~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +..++.+|+.+..+         ..+...++++-.++.+++..  ..+++.+.+.. |+|.+++.+...
T Consensus       168 ~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~  235 (334)
T 1rjd_A          168 RYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG  235 (334)
T ss_dssp             SEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred             ceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence            79999999987432         22346678888899998644  46788888776 788877666543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.99  E-value=0.0012  Score=57.32  Aligned_cols=96  Identities=9%  Similarity=0.006  Sum_probs=63.9

Q ss_pred             cCCCCeEEEEcC------cccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          164 SAQGGLLVDVSC------GSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       164 ~~~~~~iLDiGc------G~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      ...+.+|||+|+      ..|.+  .+++.++. ..++++|+.+-..              ... .++++|...... .+
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s--------------da~-~~IqGD~~~~~~-~~  168 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS--------------DAD-STLIGDCATVHT-AN  168 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC--------------SSS-EEEESCGGGEEE-SS
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc--------------CCC-eEEEcccccccc-CC
Confidence            456899999996      66773  44445554 4999999976320              123 459999765433 47


Q ss_pred             chhhheecchh---ccCC--C------HHHHHHHHHhhcccCcEEEEEeccc
Q 021344          237 FVDAVHAGAAL---HCWP--S------PSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       237 ~fD~V~~~~vl---~h~~--d------~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +||+|++...=   -+..  .      -+.++.-+.++|+|||.|++-.+..
T Consensus       169 k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG  220 (344)
T 3r24_A          169 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  220 (344)
T ss_dssp             CEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             CCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence            89999984321   1111  1      2356666788999999999988654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.73  E-value=0.0079  Score=55.12  Aligned_cols=105  Identities=13%  Similarity=0.126  Sum_probs=71.1

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CC-----C
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-----F  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp-----~  233 (314)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.          ..+.+...-.+ +.     .
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~v~~~  249 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIAAL  249 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----------CCcEEccCCcchHHHHHHHH
Confidence            45667889999999987 88888888875333799999999998888761          22333211111 00     1


Q ss_pred             -CCCchhhheecchh---------ccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 -ASGFVDAVHAGAAL---------HCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 -~~~~fD~V~~~~vl---------~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       ....+|+|+-.-.-         .|.+++...++...+.|++||++++...
T Consensus       250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence             12368988854332         1334556678999999999999987653

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=96.63  E-value=0.0011  Score=41.85  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=24.1

Q ss_pred             CCCeeeccCCCc-cchhcCCCCccccccccCceecCCCCcccc
Q 021344           57 EGDLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (314)
Q Consensus        57 ~~~~l~CP~C~~-~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (314)
                      ....+.||.|++ ++....         ..+.+.|..||..|.
T Consensus         2 ~~~~~~CP~C~~~~l~~d~---------~~gelvC~~CG~v~~   35 (50)
T 1pft_A            2 VNKQKVCPACESAELIYDP---------ERGEIVCAKCGYVIE   35 (50)
T ss_dssp             CSSCCSCTTTSCCCEEEET---------TTTEEEESSSCCBCC
T ss_pred             CCccEeCcCCCCcceEEcC---------CCCeEECcccCCccc
Confidence            345678999999 654432         236899999998874

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.56  E-value=0.011  Score=53.56  Aligned_cols=102  Identities=17%  Similarity=0.117  Sum_probs=67.1

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----CC
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PF  233 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----p~  233 (314)
                      +.....++.+||.+|+|. |.++..+++.....+|+++|.++..++.+++.    +    . -..+..+-.++     ..
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a-~~vi~~~~~~~~~~~~~~  254 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----G----A-THVINSKTQDPVAAIKEI  254 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----T----C-SEEEETTTSCHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----C-CEEecCCccCHHHHHHHh
Confidence            445567889999999987 88888888764223799999999998888763    1    1 11222111111     01


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ..+.+|+|+-.-.     . ...++...+.|++||++++....
T Consensus       255 ~~gg~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~~  291 (371)
T 1f8f_A          255 TDGGVNFALESTG-----S-PEILKQGVDALGILGKIAVVGAP  291 (371)
T ss_dssp             TTSCEEEEEECSC-----C-HHHHHHHHHTEEEEEEEEECCCC
T ss_pred             cCCCCcEEEECCC-----C-HHHHHHHHHHHhcCCEEEEeCCC
Confidence            1236888775322     2 35688899999999999886543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.55  E-value=0.0054  Score=56.31  Aligned_cols=105  Identities=14%  Similarity=0.101  Sum_probs=68.8

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-C-----
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-----  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p-----  232 (314)
                      ......++.+||.+|+|. |.++..+++.....+|+++|.++..++.+++          ...+.+..+-.+. .     
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----------lGa~~i~~~~~~~~~~~~~~  248 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----------AGFETIDLRNSAPLRDQIDQ  248 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----------TTCEEEETTSSSCHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----------cCCcEEcCCCcchHHHHHHH
Confidence            455667899999999987 8888888876422389999999998888765          1223332211111 0     


Q ss_pred             C-CCCchhhheecchhc---------cCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 F-ASGFVDAVHAGAALH---------CWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ~-~~~~fD~V~~~~vl~---------h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      . ....||+|+-.-.-.         |. ++...+++..+.|++||++++...
T Consensus       249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          249 ILGKPEVDCGVDAVGFEAHGLGDEANTE-TPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             HHSSSCEEEEEECSCTTCBCSGGGTTSB-CTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             HhCCCCCCEEEECCCCcccccccccccc-ccHHHHHHHHHHHhcCCEEEEecc
Confidence            0 122589887543321         11 123468899999999999987653

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.47  E-value=0.039  Score=48.89  Aligned_cols=107  Identities=17%  Similarity=0.089  Sum_probs=77.2

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC----CC-----c
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----SG-----F  237 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~----~~-----~  237 (314)
                      ...||++|||-=.....+.. .....++-+| .+..++..++.+...+.....+..++.+|+.+ .+.    ..     .
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA  179 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred             CCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence            35799999998666555442 2236899999 59999999998875432234678999999976 321    11     2


Q ss_pred             hhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecc
Q 021344          238 VDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      --++++-.+++|+++.  ..+++.+...+.||+.+++....
T Consensus       180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            2356677889998754  47888888888899999887754

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.30  E-value=0.0012  Score=57.38  Aligned_cols=105  Identities=9%  Similarity=-0.049  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CC---CCCCchhhh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP---FASGFVDAV  241 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp---~~~~~fD~V  241 (314)
                      ++..+||+=+|+|.++..+.+.+  .+++.+|.++..++..+++++.     ..+++++..|... +.   -+..+||+|
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~l~~~~~~fdLV  163 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNALLPPPEKRGLI  163 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence            35678999999999999999855  4999999999999999887754     2679999999643 21   123579999


Q ss_pred             eecchhccCCCHHHHHHHHHh--hcccCcEEEEEeccc
Q 021344          242 HAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR  277 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r--~LkpGG~l~i~~~~~  277 (314)
                      ++.=-.+.-.+...+++.+.+  .+.|+|++++.-+..
T Consensus       164 fiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~  201 (283)
T 2oo3_A          164 FIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVV  201 (283)
T ss_dssp             EECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEES
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEecc
Confidence            986544433345566666665  456899999988654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.16  E-value=0.027  Score=51.04  Aligned_cols=100  Identities=21%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC------
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp------  232 (314)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++...+.+++.    +    .. ..+  |.....      
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi--~~~~~~~~~~i~  244 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----G----AT-ATV--DPSAGDVVEAIA  244 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----T----CS-EEE--CTTSSCHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C----CC-EEE--CCCCcCHHHHHH
Confidence            445667899999999987 88888888875334899999999988888763    1    11 112  211110      


Q ss_pred             ----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                          ...+.+|+|+-.-     .. ...++...+.|++||++++....
T Consensus       245 ~~~~~~~gg~Dvvid~~-----G~-~~~~~~~~~~l~~~G~vv~~G~~  286 (370)
T 4ej6_A          245 GPVGLVPGGVDVVIECA-----GV-AETVKQSTRLAKAGGTVVILGVL  286 (370)
T ss_dssp             STTSSSTTCEEEEEECS-----CC-HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             hhhhccCCCCCEEEECC-----CC-HHHHHHHHHHhccCCEEEEEecc
Confidence                2234688887532     22 34688899999999999887644

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.88  E-value=0.018  Score=51.63  Aligned_cols=96  Identities=13%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchh
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD  239 (314)
                      .....++.+||-+|+|. |.++..+++.. ..+|+++|.++...+.+++.    +    ... .+ .+...  +. +.+|
T Consensus       171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~~-v~-~~~~~--~~-~~~D  236 (348)
T 3two_A          171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSM----G----VKH-FY-TDPKQ--CK-EELD  236 (348)
T ss_dssp             HTTCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHT----T----CSE-EE-SSGGG--CC-SCEE
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhc----C----CCe-ec-CCHHH--Hh-cCCC
Confidence            34667899999999987 88888888764 34999999999888888762    1    111 22 33222  22 2688


Q ss_pred             hheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +|+-.-.     .+ ..++...+.|++||++++....
T Consensus       237 ~vid~~g-----~~-~~~~~~~~~l~~~G~iv~~G~~  267 (348)
T 3two_A          237 FIISTIP-----TH-YDLKDYLKLLTYNGDLALVGLP  267 (348)
T ss_dssp             EEEECCC-----SC-CCHHHHHTTEEEEEEEEECCCC
T ss_pred             EEEECCC-----cH-HHHHHHHHHHhcCCEEEEECCC
Confidence            8885332     11 2477888999999999987643

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.86  E-value=0.071  Score=48.00  Aligned_cols=104  Identities=13%  Similarity=0.094  Sum_probs=69.2

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---C----
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L----  231 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---l----  231 (314)
                      +.....++.+||-+|+|. |.++..+++......|+++|.++..++.+++. ..      .-+.+. .+...   +    
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~------~~~~~~-~~~~~~~~~~~~v  244 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP------EVVTHK-VERLSAEESAKKI  244 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT------TCEEEE-CCSCCHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch------hccccc-ccccchHHHHHHH
Confidence            445667889999999987 88888888875333499999999999999875 21      112222 11100   0    


Q ss_pred             --CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          232 --PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       232 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                        -.....+|+|+-.-.     . ...++...+.|++||++++.....
T Consensus       245 ~~~t~g~g~Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~~~  286 (363)
T 3m6i_A          245 VESFGGIEPAVALECTG-----V-ESSIAAAIWAVKFGGKVFVIGVGK  286 (363)
T ss_dssp             HHHTSSCCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECCCCC
T ss_pred             HHHhCCCCCCEEEECCC-----C-hHHHHHHHHHhcCCCEEEEEccCC
Confidence              011346888875322     2 345788899999999999876543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.85  E-value=0.028  Score=50.79  Aligned_cols=92  Identities=18%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             CCCeEEEEc-Ccc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-----CCCCCc
Q 021344          166 QGGLLVDVS-CGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PFASGF  237 (314)
Q Consensus       166 ~~~~iLDiG-cG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l-----p~~~~~  237 (314)
                      ++.+||-+| +|. |.++..+++.....+|+++|.++..++.+++.    +      .+.+. |..+ +     ....+.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----G------ad~vi-~~~~~~~~~v~~~~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----G------AHHVI-DHSKPLAAEVAALGLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----T------CSEEE-CTTSCHHHHHHTTCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----C------CCEEE-eCCCCHHHHHHHhcCCC
Confidence            678999998 555 88999999862245999999999988888762    1      11111 2111 0     112346


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +|+|+-.-.      -...++.+.+.|++||++++..
T Consensus       240 ~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          240 PAFVFSTTH------TDKHAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             EEEEEECSC------HHHHHHHHHHHSCTTCEEEECS
T ss_pred             ceEEEECCC------chhhHHHHHHHhcCCCEEEEEC
Confidence            888775322      2356888999999999998763

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.83  E-value=0.023  Score=52.35  Aligned_cols=63  Identities=11%  Similarity=0.119  Sum_probs=48.0

Q ss_pred             cCCCCeEEEEcCcccHHHHHHH-HhCC-CCeEEEEeCCHHHHHHHHHHHHh--cCCCCC-CCeEEEEecC
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFA-KSGT-YSGVVALDFSENMLRQCYDFIKQ--DNTILT-SNLALVRADV  228 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~-~~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~~~~-~~v~~~~~d~  228 (314)
                      ..++..++|||++.|.++..++ +.++ ..+|+++|+++...+..+++++.  ++  .. .++.++..-+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~--~~~~~v~~~~~al  291 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT--NFASRITVHGCGA  291 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS--TTGGGEEEECSEE
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhcc--CCCCCEEEEEeEE
Confidence            3578899999999999999887 4443 36999999999999999998876  21  12 4565554433

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.77  E-value=0.032  Score=45.56  Aligned_cols=95  Identities=20%  Similarity=0.138  Sum_probs=60.9

Q ss_pred             HhccCCCCeEEEEcC--cccHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344          161 YFKSAQGGLLVDVSC--GSGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGc--G~G~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----  232 (314)
                      .....++.+||.+|+  |.|..+..+++ .|.  +|+++|.+++..+.+++    .+    .. ..  .|..+..     
T Consensus        33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~----~g----~~-~~--~d~~~~~~~~~~   99 (198)
T 1pqw_A           33 VGRLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSR----LG----VE-YV--GDSRSVDFADEI   99 (198)
T ss_dssp             TSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHT----TC----CS-EE--EETTCSTHHHHH
T ss_pred             HhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH----cC----CC-EE--eeCCcHHHHHHH
Confidence            345567889999994  44766655554 454  89999999887766643    12    11 11  2333211     


Q ss_pred             ---CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         ...+.+|+|+....       ...++...+.|++||+++....
T Consensus       100 ~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          100 LELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             HHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred             HHHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence               11235888875432       2468889999999999988654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.76  E-value=0.028  Score=50.61  Aligned_cols=101  Identities=15%  Similarity=0.125  Sum_probs=66.3

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC---CC----C
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV---CR----L  231 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~---~~----l  231 (314)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    +    .. ..+..+-   .+    +
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~~~i  235 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----G----AD-LVLQISKESPQEIARKV  235 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CS-EEEECSSCCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C----CC-EEEcCcccccchHHHHH
Confidence            345667889999999986 88888888865333899999999988888752    1    11 2222110   00    0


Q ss_pred             -CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       ....+.+|+|+-.-     .. ...+....+.|++||++++...
T Consensus       236 ~~~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          236 EGQLGCKPEVTIECT-----GA-EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             HHHHTSCCSEEEECS-----CC-HHHHHHHHHHSCTTCEEEECSC
T ss_pred             HHHhCCCCCEEEECC-----CC-hHHHHHHHHHhcCCCEEEEEec
Confidence             00113578877432     22 3457888999999999988664

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.75  E-value=0.018  Score=51.34  Aligned_cols=60  Identities=10%  Similarity=0.104  Sum_probs=49.9

Q ss_pred             chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (314)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  213 (314)
                      +.++++.+.+... .++..|||.-||+|..+....+.+.  +.+|+|+++...+.+++++...
T Consensus       238 p~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          238 PAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             CTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCS
T ss_pred             CHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHhc
Confidence            4566666666553 4688999999999999999998876  9999999999999999877654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.64  E-value=0.027  Score=48.44  Aligned_cols=108  Identities=17%  Similarity=0.171  Sum_probs=70.4

Q ss_pred             CCeEEEEcCcccHHHHHHHHh-------CCCCeEEEEe-----CCHH-------------------HHHHHHHHHH---h
Q 021344          167 GGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALD-----FSEN-------------------MLRQCYDFIK---Q  212 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~-------~~~~~v~giD-----~s~~-------------------~~~~a~~~~~---~  212 (314)
                      .+.|+|+|+-.|..+..++..       ++..+++++|     +.+.                   ..+..++.++   .
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            568999999999977775542       4567999999     3210                   0111222111   1


Q ss_pred             -cCCCC-CCCeEEEEecCCC-CC-----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          213 -DNTIL-TSNLALVRADVCR-LP-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       213 -~~~~~-~~~v~~~~~d~~~-lp-----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       ...+. ..+++++.+++.+ +|     .+.++||+|+...-.  .......+..+...|+|||++++-++.
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence             11112 3789999999865 33     234579999986532  123346789999999999999998864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.62  E-value=0.034  Score=50.05  Aligned_cols=98  Identities=13%  Similarity=0.103  Sum_probs=63.8

Q ss_pred             HhccCCC------CeEEEEcCcc-cHHH-HHHH-HhCCCCeEEEEeCCHH---HHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          161 YFKSAQG------GLLVDVSCGS-GLFS-RKFA-KSGTYSGVVALDFSEN---MLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       161 ~l~~~~~------~~iLDiGcG~-G~~~-~~l~-~~~~~~~v~giD~s~~---~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      .....++      .+||-+|+|. |.++ ..++ +.....+|+++|.+++   ..+.+++          ...+.+  |.
T Consensus       161 ~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----------lGa~~v--~~  228 (357)
T 2b5w_A          161 HAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----------LDATYV--DS  228 (357)
T ss_dssp             HHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----------TTCEEE--ET
T ss_pred             hcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----------cCCccc--CC
Confidence            3445567      8999999865 7788 8888 6532224999999887   7777765          223333  43


Q ss_pred             CCCCCC-----CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          229 CRLPFA-----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       229 ~~lp~~-----~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+..+.     .+.+|+|+-.     ... ...++...+.|++||++++....
T Consensus       229 ~~~~~~~i~~~~gg~Dvvid~-----~g~-~~~~~~~~~~l~~~G~iv~~g~~  275 (357)
T 2b5w_A          229 RQTPVEDVPDVYEQMDFIYEA-----TGF-PKHAIQSVQALAPNGVGALLGVP  275 (357)
T ss_dssp             TTSCGGGHHHHSCCEEEEEEC-----SCC-HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             CccCHHHHHHhCCCCCEEEEC-----CCC-hHHHHHHHHHHhcCCEEEEEeCC
Confidence            321111     1257777643     222 24578899999999999887643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.62  E-value=0.026  Score=50.68  Aligned_cols=102  Identities=14%  Similarity=0.159  Sum_probs=67.9

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----C
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F  233 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~  233 (314)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.-        . -.++..+-.++.     .
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lG--------a-~~vi~~~~~~~~~~v~~~  230 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYG--------A-TDIINYKNGDIVEQILKA  230 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHT--------C-CEEECGGGSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC--------C-ceEEcCCCcCHHHHHHHH
Confidence            455667899999999987 888888888753337999999999888887731        1 112221111110     1


Q ss_pred             -CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       ....+|+|+-...     . ...++...+.|++||++++....
T Consensus       231 t~g~g~D~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          231 TDGKGVDKVVIAGG-----D-VHTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             TTTCCEEEEEECSS-----C-TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             cCCCCCCEEEECCC-----C-hHHHHHHHHHHhcCCEEEEeccc
Confidence             1235888875322     2 24578889999999999876543

>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=95.60  E-value=0.0036  Score=47.26  Aligned_cols=29  Identities=14%  Similarity=0.362  Sum_probs=25.5

Q ss_pred             cccccCceecCCCCccccCccceeeeecc
Q 021344           81 GAIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (314)
Q Consensus        81 ~~i~~~~l~C~~C~~~~~~~~g~~~~~~~  109 (314)
                      ..+.+|.+.|+.||+.|++++|+++.+..
T Consensus        93 ~~V~EG~L~Cp~cgr~ypI~~GIPNm~~~  121 (125)
T 3q87_A           93 IDVVEGSLRCDMCGLIYPIKGSIVETVDT  121 (125)
T ss_dssp             EEEEEEEEEETTTCCEEEEETTEEECSSC
T ss_pred             eEEEEEEEECCCCCCEeeccCCcccHHHh
Confidence            46677899999999999999999998754

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.58  E-value=0.037  Score=49.42  Aligned_cols=98  Identities=18%  Similarity=0.214  Sum_probs=66.1

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----  233 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----  233 (314)
                      ......++.+||-+|+|. |.++..+++.. ..+|+++|.++..++.+++.    +    .. ..+  |..+..+     
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~i--~~~~~~~~~~~~  227 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRL----G----AE-VAV--NARDTDPAAWLQ  227 (340)
T ss_dssp             HTTTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----T----CS-EEE--ETTTSCHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHc----C----CC-EEE--eCCCcCHHHHHH
Confidence            344567889999999986 88888888874 34999999999998888762    1    11 122  2222111     


Q ss_pred             -CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       ..+.+|+|+....     . ...++...+.|++||++++...
T Consensus       228 ~~~g~~d~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          228 KEIGGAHGVLVTAV-----S-PKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             HHHSSEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECSC
T ss_pred             HhCCCCCEEEEeCC-----C-HHHHHHHHHHhccCCEEEEeCC
Confidence             1125777764321     2 3568889999999999988654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.51  E-value=0.097  Score=46.89  Aligned_cols=100  Identities=16%  Similarity=0.109  Sum_probs=65.4

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-CCCC-----
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP-----  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~lp-----  232 (314)
                      +.....++.+||-+|+|. |.++..+++.. ..+|+++|.++..++.+++.    +    .. ..+..+- .+..     
T Consensus       162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~~~~~~~~~~~~~i~~  231 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC----G----AD-VTLVVDPAKEEESSIIE  231 (352)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----T----CS-EEEECCTTTSCHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----C----CC-EEEcCcccccHHHHHHH
Confidence            344567889999999886 78888887764 33799999999988888752    1    11 2222110 1110     


Q ss_pred             -CC---CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 -FA---SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 -~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       ..   .+.+|+|+..-     .. ...++...+.|++||++++...
T Consensus       232 ~~~~~~g~g~D~vid~~-----g~-~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          232 RIRSAIGDLPNVTIDCS-----GN-EKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             HHHHHSSSCCSEEEECS-----CC-HHHHHHHHHHSCTTCEEEECSC
T ss_pred             HhccccCCCCCEEEECC-----CC-HHHHHHHHHHHhcCCEEEEEec
Confidence             01   23588877532     22 3457888999999999988654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.48  E-value=0.028  Score=50.05  Aligned_cols=61  Identities=18%  Similarity=0.330  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCH---HHHHHHHHHHHhc
Q 021344          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE---NMLRQCYDFIKQD  213 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~---~~~~~a~~~~~~~  213 (314)
                      -+..+++.+.+... .++..|||.-||+|..+.+..+.+.  +.+|+|+++   ..++.+++++...
T Consensus       227 kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          227 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHHc
Confidence            34566667766554 4688999999999999999999876  999999999   9999999987543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.48  E-value=0.033  Score=50.55  Aligned_cols=102  Identities=17%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec--CCCC-----
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD--VCRL-----  231 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d--~~~l-----  231 (314)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    +    . -..+...  -.++     
T Consensus       187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----G----a-~~vi~~~~~~~~~~~~i~  257 (378)
T 3uko_A          187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----G----V-NEFVNPKDHDKPIQEVIV  257 (378)
T ss_dssp             TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----T----C-CEEECGGGCSSCHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----C-cEEEccccCchhHHHHHH
Confidence            445667889999999986 88888888764233899999999888887652    1    1 1122111  0111     


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEecc
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~~  276 (314)
                      ...++.+|+|+-.-     .. ...++...+.|++| |++++....
T Consensus       258 ~~~~gg~D~vid~~-----g~-~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          258 DLTDGGVDYSFECI-----GN-VSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             HHTTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             HhcCCCCCEEEECC-----CC-HHHHHHHHHHhhccCCEEEEEccc
Confidence            01233688887532     22 34588899999997 999887653

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.47  E-value=0.01  Score=52.53  Aligned_cols=93  Identities=10%  Similarity=0.034  Sum_probs=61.5

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCch
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~f  238 (314)
                      +.....++.+||-+|+|. |.++..+++.. +.+|++++ ++...+.+++.          ..+.+.-|...+   .+.+
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~l----------Ga~~v~~d~~~v---~~g~  200 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKR----------GVRHLYREPSQV---TQKY  200 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHH----------TEEEEESSGGGC---CSCE
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHc----------CCCEEEcCHHHh---CCCc
Confidence            445667899999999975 88888888763 23999999 88888888762          122222232222   4578


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+|+-.-.     .  ..+....+.|++||+++...
T Consensus       201 Dvv~d~~g-----~--~~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          201 FAIFDAVN-----S--QNAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EEEECC--------------TTGGGEEEEEEEEEEC
T ss_pred             cEEEECCC-----c--hhHHHHHHHhcCCCEEEEEe
Confidence            98885432     1  12356789999999998874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.41  E-value=0.038  Score=49.46  Aligned_cols=98  Identities=13%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----C-CC
Q 021344          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS  235 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~-~~  235 (314)
                      ...++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    +    .. ..+..+ .+..     . ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----G----a~-~~i~~~-~~~~~~v~~~t~g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----G----AD-AAVKSG-AGAADAIRELTGG  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----T----CS-EEEECS-TTHHHHHHHHHGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C----CC-EEEcCC-CcHHHHHHHHhCC
Confidence            556789999999987 88888888763245999999999999888762    1    11 122211 1110     0 11


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ..+|+|+-.     +.. ...++...+.|++||++++....
T Consensus       238 ~g~d~v~d~-----~G~-~~~~~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          238 QGATAVFDF-----VGA-QSTIDTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             GCEEEEEES-----SCC-HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCCeEEEEC-----CCC-HHHHHHHHHHHhcCCEEEEECCC
Confidence            257777643     222 34688999999999999887643

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.36  E-value=0.033  Score=50.29  Aligned_cols=100  Identities=15%  Similarity=0.087  Sum_probs=66.8

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC------
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp------  232 (314)
                      +.....++.+||-+|+|. |..+..+++.. +.+|+++|.++..++.+++.    +    . -..+..+..++.      
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a-~~vi~~~~~~~~~~v~~~  252 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFAL----G----A-DHGINRLEEDWVERVYAL  252 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH----T----C-SEEEETTTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHc----C----C-CEEEcCCcccHHHHHHHH
Confidence            345567889999999887 88888887764 34999999999988888763    1    1 122221111110      


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .....+|+|+-...       ...+....+.|++||++++....
T Consensus       253 ~~g~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          253 TGDRGADHILEIAG-------GAGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             HTTCCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEECCC
T ss_pred             hCCCCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEecC
Confidence            11236898876433       12477788999999999987644

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.23  E-value=0.062  Score=47.74  Aligned_cols=97  Identities=10%  Similarity=-0.010  Sum_probs=62.7

Q ss_pred             HHhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CC----
Q 021344          160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP----  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp----  232 (314)
                      +.....++.+||..|+  |.|..+..+++.. +.+|+++|.++..++.+++.    +    ...   ..|..+ ..    
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~----g----~~~---~~d~~~~~~~~~~  206 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI----G----FDA---AFNYKTVNSLEEA  206 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CSE---EEETTSCSCHHHH
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----C----CcE---EEecCCHHHHHHH
Confidence            3445667899999998  4577766666543 23999999999888777441    1    111   124332 11    


Q ss_pred             ---CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         ...+.+|+|+....       ...++...+.|++||++++...
T Consensus       207 ~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          207 LKKASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             HHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             HHHHhCCCCeEEEECCC-------hHHHHHHHHHHhcCCEEEEEec
Confidence               11246888776543       1347888999999999987653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.19  E-value=0.044  Score=49.58  Aligned_cols=101  Identities=14%  Similarity=0.113  Sum_probs=65.5

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC--CCC-----
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----  231 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~--~~l-----  231 (314)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    +    .. ..+..+-  .++     
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~~i~  255 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----G----AT-ECLNPKDYDKPIYEVIC  255 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----T----CS-EEECGGGCSSCHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----Cc-EEEecccccchHHHHHH
Confidence            345567789999999986 88888888764223799999999888888752    1    11 1221110  111     


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEec
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~  275 (314)
                      ....+.+|+|+-.-     .. ...++...+.|++| |++++...
T Consensus       256 ~~t~gg~Dvvid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          256 EKTNGGVDYAVECA-----GR-IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             HHTTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HHhCCCCCEEEECC-----CC-HHHHHHHHHHHhcCCCEEEEEcc
Confidence            01123688877532     22 34578899999999 99987654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.07  E-value=0.075  Score=47.40  Aligned_cols=95  Identities=24%  Similarity=0.249  Sum_probs=62.9

Q ss_pred             ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC------
Q 021344          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS------  235 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~------  235 (314)
                      ...++.+||-+|+|. |..+..+++.. +.+|+++|.++..++.+++.    +      ...+ .|..+..+.+      
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l----G------a~~~-~d~~~~~~~~~~~~~~  228 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL----G------ADLV-VNPLKEDAAKFMKEKV  228 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----T------CSEE-ECTTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHC----C------CCEE-ecCCCccHHHHHHHHh
Confidence            566789999999975 77777777764 34999999999988887651    1      1111 2332211100      


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +.+|+|+...     .. ...++...+.|++||++++...
T Consensus       229 ~~~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          229 GGVHAAVVTA-----VS-KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             SSEEEEEESS-----CC-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECC-----CC-HHHHHHHHHHhhcCCEEEEecc
Confidence            3577776432     22 2457888999999999987653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.06  E-value=0.054  Score=49.05  Aligned_cols=101  Identities=14%  Similarity=0.087  Sum_probs=65.3

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC--CCCC----
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLP----  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~--~~lp----  232 (314)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    +    .. ..+..+-  .++.    
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~~v~  259 (376)
T 1e3i_A          189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----G----AT-DCLNPRELDKPVQDVIT  259 (376)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T----CS-EEECGGGCSSCHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C----Cc-EEEccccccchHHHHHH
Confidence            344566789999999886 88888888875333899999999888887652    1    11 1221110  0110    


Q ss_pred             -CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEec
Q 021344          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (314)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~  275 (314)
                       ...+.+|+|+-.     ... ...++...+.|++| |++++...
T Consensus       260 ~~~~~g~Dvvid~-----~G~-~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          260 ELTAGGVDYSLDC-----AGT-AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             HHHTSCBSEEEES-----SCC-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HHhCCCccEEEEC-----CCC-HHHHHHHHHHhhcCCCEEEEECC
Confidence             112357877643     222 34588899999999 99987654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.04  E-value=0.16  Score=45.13  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=65.5

Q ss_pred             HHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344          159 QEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----  232 (314)
                      .......++.+||-+|+|. |.++..+++......++++|.++..++.+++.         .....+..+-...+     
T Consensus       153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l---------Ga~~~i~~~~~~~~~~~~~  223 (346)
T 4a2c_A          153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF---------GAMQTFNSSEMSAPQMQSV  223 (346)
T ss_dssp             HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHHHH
T ss_pred             HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc---------CCeEEEeCCCCCHHHHHHh
Confidence            3445567889999999987 66777777765445789999999988888772         11222222111111     


Q ss_pred             -CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       .....+|+|+..     ... ...++...+.|++||.+++....
T Consensus       224 ~~~~~g~d~v~d~-----~G~-~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          224 LRELRFNQLILET-----AGV-PQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             HGGGCSSEEEEEC-----SCS-HHHHHHHHHHCCTTCEEEECCCC
T ss_pred             hcccCCccccccc-----ccc-cchhhhhhheecCCeEEEEEecc
Confidence             012345655532     222 34578888999999999886644

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.00  E-value=0.09  Score=46.72  Aligned_cols=100  Identities=10%  Similarity=0.008  Sum_probs=65.4

Q ss_pred             HHHHhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---
Q 021344          158 AQEYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---  232 (314)
                      +.+.....++.+||-+|+  |.|..+..+++.. ..+|+++|.++..++.+.+.+   +    .. ..+  |..+..   
T Consensus       141 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~---g----~~-~~~--~~~~~~~~~  209 (336)
T 4b7c_A          141 LLDVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEEL---G----FD-GAI--DYKNEDLAA  209 (336)
T ss_dssp             HHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT---C----CS-EEE--ETTTSCHHH
T ss_pred             HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc---C----CC-EEE--ECCCHHHHH
Confidence            335556778999999998  4478777777653 339999999998887773321   1    11 112  222211   


Q ss_pred             ----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                          ...+.+|+|+....       ...+....+.|++||++++...
T Consensus       210 ~~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          210 GLKRECPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             HHHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             HHHHhcCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEEee
Confidence                11245888775432       2468889999999999988654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=94.98  E-value=0.058  Score=49.10  Aligned_cols=70  Identities=19%  Similarity=0.177  Sum_probs=54.6

Q ss_pred             CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC--------CCCchh
Q 021344          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------ASGFVD  239 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~--------~~~~fD  239 (314)
                      .+++|+-||.|.+...+...|. ..+.++|+++.+++..+.+.        .+..++.+|+.++..        ....+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N~--------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D   73 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINF--------PRSLHVQEDVSLLNAEIIKGFFKNDMPID   73 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHHC--------TTSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHhC--------CCCceEecChhhcCHHHHHhhcccCCCee
Confidence            4799999999999999999884 35679999999988887753        456778889877531        235799


Q ss_pred             hheecch
Q 021344          240 AVHAGAA  246 (314)
Q Consensus       240 ~V~~~~v  246 (314)
                      +|+...-
T Consensus        74 ~i~ggpP   80 (376)
T 3g7u_A           74 GIIGGPP   80 (376)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9987543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.96  E-value=0.07  Score=48.27  Aligned_cols=101  Identities=17%  Similarity=0.173  Sum_probs=65.2

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC--CCCC----
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLP----  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~--~~lp----  232 (314)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    +    .. ..+..+-  .++.    
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~~  256 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----G----AT-DFVNPNDHSEPISQVLS  256 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T----CC-EEECGGGCSSCHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----C----Cc-eEEeccccchhHHHHHH
Confidence            344566789999999876 88888888775323799999999888888752    1    11 1221110  0110    


Q ss_pred             -CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEec
Q 021344          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (314)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~  275 (314)
                       ...+.+|+|+-.-     .. ...++...+.|++| |++++...
T Consensus       257 ~~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          257 KMTNGGVDFSLECV-----GN-VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             HHHTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HHhCCCCCEEEECC-----CC-HHHHHHHHHHhhcCCcEEEEEcC
Confidence             1123578777432     22 34588899999999 99987654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.94  E-value=0.13  Score=46.99  Aligned_cols=98  Identities=13%  Similarity=0.039  Sum_probs=64.5

Q ss_pred             ccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-------C-
Q 021344          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------F-  233 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-------~-  233 (314)
                      ...++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.-        . -.++  |.....       . 
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lG--------a-~~vi--~~~~~~~~~~i~~~t  278 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELG--------A-DHVI--DPTKENFVEAVLDYT  278 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHT--------C-SEEE--CTTTSCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC--------C-CEEE--cCCCCCHHHHHHHHh
Confidence            456789999999976 888888888753348999999999998887631        1 1122  221111       1 


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhc----ccCcEEEEEecc
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRIL----RSGGVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L----kpGG~l~i~~~~  276 (314)
                      ....+|+|+-.     +..+...+..+.+.|    ++||++++....
T Consensus       279 ~g~g~D~vid~-----~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          279 NGLGAKLFLEA-----TGVPQLVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             TTCCCSEEEEC-----SSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             CCCCCCEEEEC-----CCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            12358877743     344544556666666    999999987643

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.86  E-value=0.078  Score=47.96  Aligned_cols=101  Identities=15%  Similarity=0.136  Sum_probs=65.1

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC--CCC-----
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----  231 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~--~~l-----  231 (314)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    +    .. ..+..+-  .++     
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~~  255 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----G----AT-ECVNPQDYKKPIQEVLT  255 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T----CS-EEECGGGCSSCHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C----Cc-eEecccccchhHHHHHH
Confidence            344566789999999886 88888888765333799999999888887652    1    11 1221110  111     


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEec
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~  275 (314)
                      ....+.+|+|+-.-     .. ...++...+.|++| |++++...
T Consensus       256 ~~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          256 EMSNGGVDFSFEVI-----GR-LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             HHTTSCBSEEEECS-----CC-HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             HHhCCCCcEEEECC-----CC-HHHHHHHHHHhhcCCcEEEEecc
Confidence            01123578776432     22 34578889999999 99987653

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=94.85  E-value=0.13  Score=45.94  Aligned_cols=100  Identities=16%  Similarity=0.123  Sum_probs=61.4

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC------C
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp------~  233 (314)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.+++.++.+++.-        .. ..+...-.+..      .
T Consensus       158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~G--------a~-~~i~~~~~~~~~~v~~~t  228 (348)
T 4eez_A          158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIG--------AD-VTINSGDVNPVDEIKKIT  228 (348)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTT--------CS-EEEEC-CCCHHHHHHHHT
T ss_pred             ccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcC--------Ce-EEEeCCCCCHHHHhhhhc
Confidence            34567789999999987 455555555433569999999999888777621        11 12221111110      1


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ....+|+++...+      -...+....+.|++||.+++...
T Consensus       229 ~g~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          229 GGLGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             TSSCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCceEEEEecc------CcchhheeheeecCCceEEEEec
Confidence            1223555543221      24568888999999999988654

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=94.84  E-value=0.27  Score=38.50  Aligned_cols=90  Identities=16%  Similarity=0.189  Sum_probs=61.8

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS-------------------ENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s-------------------~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      .+-|||+|-|+|+.-.++.+..++.+++++|-.                   .+++..+..++   +    ..+.+.++|
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~---g----~~a~LaHaD  113 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERF---G----ATASLVHAD  113 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHH---C----SCEEEEEEC
T ss_pred             CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhc---C----CceEEEEee
Confidence            557999999999999999999999999999842                   12333333332   2    567777777


Q ss_pred             CCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +-.-   +..-|+++..+.          -.-+..+|.|||+++-..+.
T Consensus       114 ~G~g---~~~~d~a~a~~l----------splI~~~la~GGi~vS~~pl  149 (174)
T 3iht_A          114 LGGH---NREKNDRFARLI----------SPLIEPHLAQGGLMVSSDRM  149 (174)
T ss_dssp             CCCS---CHHHHHHHHHHH----------HHHHGGGEEEEEEEEESSCC
T ss_pred             cCCC---CcchhHHHHHhh----------hHHHHHHhcCCcEEEeCCcc
Confidence            6432   233455554332          34466899999999876655

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.80  E-value=0.086  Score=46.85  Aligned_cols=97  Identities=18%  Similarity=0.232  Sum_probs=63.4

Q ss_pred             hccCCCCeEEEEcC-c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC------C
Q 021344          162 FKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F  233 (314)
Q Consensus       162 l~~~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp------~  233 (314)
                      ....++.+||-+|+ | .|..+..+++.. +.+|+++|.++..++.+++.    +    .. ..+..+-.+..      .
T Consensus       144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~~~~~~~~~~~~~~~~~~  213 (334)
T 3qwb_A          144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEY----G----AE-YLINASKEDILRQVLKFT  213 (334)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CS-EEEETTTSCHHHHHHHHT
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C----Cc-EEEeCCCchHHHHHHHHh
Confidence            35667899999994 3 477777777763 34999999999988877662    1    11 12221111110      1


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ....+|+|+....-       ..++...+.|++||++++...
T Consensus       214 ~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          214 NGKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             TTSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence            13468988864431       357888899999999988654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.75  E-value=0.1  Score=46.23  Aligned_cols=98  Identities=11%  Similarity=0.086  Sum_probs=64.6

Q ss_pred             HhccCCCCeEEEEc-Cc-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC------
Q 021344          161 YFKSAQGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiG-cG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp------  232 (314)
                      .....++.+||-+| +| .|..+..+++.. +.+|+++|.++..++.+++.    +    .. ..+  |..+..      
T Consensus       135 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----G----a~-~~~--~~~~~~~~~~~~  202 (325)
T 3jyn_A          135 TYQVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKAL----G----AW-ETI--DYSHEDVAKRVL  202 (325)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH----T----CS-EEE--ETTTSCHHHHHH
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C----CC-EEE--eCCCccHHHHHH
Confidence            34566789999999 34 488777777653 23999999999988888762    1    11 122  222211      


Q ss_pred             --CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                        .....+|+|+....     .  ..+....+.|++||++++.....
T Consensus       203 ~~~~~~g~Dvvid~~g-----~--~~~~~~~~~l~~~G~iv~~g~~~  242 (325)
T 3jyn_A          203 ELTDGKKCPVVYDGVG-----Q--DTWLTSLDSVAPRGLVVSFGNAS  242 (325)
T ss_dssp             HHTTTCCEEEEEESSC-----G--GGHHHHHTTEEEEEEEEECCCTT
T ss_pred             HHhCCCCceEEEECCC-----h--HHHHHHHHHhcCCCEEEEEecCC
Confidence              11246888875433     1  35778889999999999876543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.73  E-value=0.058  Score=48.12  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=63.5

Q ss_pred             HHHhccCCCCeEEEEcCc--ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----
Q 021344          159 QEYFKSAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG--~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----  232 (314)
                      .+.....++.+||-+|+|  .|..+..+++.. +.+|+++|.++..++.+++.    +    .. ..+  |.....    
T Consensus       137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l----g----a~-~~~--~~~~~~~~~~  204 (340)
T 3gms_A          137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRL----G----AA-YVI--DTSTAPLYET  204 (340)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH----T----CS-EEE--ETTTSCHHHH
T ss_pred             HHhcccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhC----C----Cc-EEE--eCCcccHHHH
Confidence            344566789999999987  477777777653 23999999999888888762    1    11 122  222211    


Q ss_pred             ----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                          .....+|+|+....     .  ..+.+..+.|++||++++....
T Consensus       205 ~~~~~~~~g~Dvvid~~g-----~--~~~~~~~~~l~~~G~iv~~G~~  245 (340)
T 3gms_A          205 VMELTNGIGADAAIDSIG-----G--PDGNELAFSLRPNGHFLTIGLL  245 (340)
T ss_dssp             HHHHTTTSCEEEEEESSC-----H--HHHHHHHHTEEEEEEEEECCCT
T ss_pred             HHHHhCCCCCcEEEECCC-----C--hhHHHHHHHhcCCCEEEEEeec
Confidence                11236888875432     1  1234455899999999987643

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=94.69  E-value=0.016  Score=52.09  Aligned_cols=72  Identities=11%  Similarity=0.045  Sum_probs=54.1

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---CCCchhhhe
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVH  242 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---~~~~fD~V~  242 (314)
                      ..+++|+-||.|.+...+...|.. ..++++|+++.+++..+.+..        +..++.+|+.++..   +...+|+|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~--------~~~~~~~Di~~~~~~~~~~~~~D~l~   73 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP--------HTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc--------ccccccCCHHHccHhHcCcCCcCEEE
Confidence            357999999999999999998731 368999999999999888652        34467788876531   112589888


Q ss_pred             ecch
Q 021344          243 AGAA  246 (314)
Q Consensus       243 ~~~v  246 (314)
                      ...-
T Consensus        74 ~gpP   77 (343)
T 1g55_A           74 MSPP   77 (343)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            7543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.64  E-value=0.053  Score=47.72  Aligned_cols=107  Identities=13%  Similarity=0.094  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCcccHHHHHH----HHhCCCCe--EEEEeCCH---------HHHHHHHHHHHhcCCC--CCCCeEEEEecC
Q 021344          166 QGGLLVDVSCGSGLFSRKF----AKSGTYSG--VVALDFSE---------NMLRQCYDFIKQDNTI--LTSNLALVRADV  228 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l----~~~~~~~~--v~giD~s~---------~~~~~a~~~~~~~~~~--~~~~v~~~~~d~  228 (314)
                      +.-+|||+|-|+|.+....    .+..+..+  ++.+|..+         ...+..+.........  ....+++..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            3457999999999865432    23344444  56666421         1111122222211000  113456778887


Q ss_pred             CC-CC-CCCCchhhheecchhccCCCH----HHHHHHHHhhcccCcEEEEE
Q 021344          229 CR-LP-FASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       229 ~~-lp-~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpGG~l~i~  273 (314)
                      .+ ++ +.+.+||+|+... +.--.+|    ..+++.++++++|||+++..
T Consensus       176 ~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laTY  225 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVSY  225 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEES
T ss_pred             HHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEEE
Confidence            44 33 3345799998753 3333455    48999999999999998643

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.63  E-value=0.038  Score=50.10  Aligned_cols=95  Identities=17%  Similarity=0.189  Sum_probs=63.1

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCCC
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASG  236 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p~~~~  236 (314)
                      ....++.+||-+|+|. |.++..+++.. +.+|+++|.++..++.+++.    +   ..  .++  |..+.    ... +
T Consensus       190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~l----G---a~--~vi--~~~~~~~~~~~~-~  256 (369)
T 1uuf_A          190 WQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL----G---AD--EVV--NSRNADEMAAHL-K  256 (369)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH----T---CS--EEE--ETTCHHHHHTTT-T
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C---Cc--EEe--ccccHHHHHHhh-c
Confidence            4567789999999986 88888888764 34899999999888888762    1   11  122  11110    011 4


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .+|+|+..-.-      ...++...+.|++||++++...
T Consensus       257 g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          257 SFDFILNTVAA------PHNLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             CEEEEEECCSS------CCCHHHHHTTEEEEEEEEECCC
T ss_pred             CCCEEEECCCC------HHHHHHHHHHhccCCEEEEecc
Confidence            68888754321      1236778899999999987653

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.61  E-value=0.084  Score=47.68  Aligned_cols=101  Identities=16%  Similarity=0.172  Sum_probs=65.2

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC--CCC-----
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----  231 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~--~~l-----  231 (314)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    +    .. ..+...-  .++     
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~v~  254 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----G----AT-ECINPQDFSKPIQEVLI  254 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----T----CS-EEECGGGCSSCHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----Cc-eEeccccccccHHHHHH
Confidence            344567789999999876 78888887764223799999999888888752    1    11 1221110  111     


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEec
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~  275 (314)
                      ....+.+|+|+-.-     .. ...++...+.|++| |++++...
T Consensus       255 ~~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          255 EMTDGGVDYSFECI-----GN-VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             HHTTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HHhCCCCCEEEECC-----Cc-HHHHHHHHHhhccCCcEEEEEec
Confidence            01123688877432     22 34578899999999 99987654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.51  E-value=0.1  Score=46.64  Aligned_cols=91  Identities=13%  Similarity=0.174  Sum_probs=60.2

Q ss_pred             CCCeEEEE-cCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-C-----CCCCCc
Q 021344          166 QGGLLVDV-SCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PFASGF  237 (314)
Q Consensus       166 ~~~~iLDi-GcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-l-----p~~~~~  237 (314)
                      ++.+||-+ |+|. |..+..+++.. ..+|+++|.++..++.+++.    +   ..  ..+  |..+ +     ....+.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G---a~--~vi--~~~~~~~~~~~~~~~~g  217 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKM----G---AD--IVL--NHKESLLNQFKTQGIEL  217 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHH----T---CS--EEE--CTTSCHHHHHHHHTCCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C---Cc--EEE--ECCccHHHHHHHhCCCC
Confidence            68899999 4554 88888887764 34999999999988888773    1   11  111  1111 1     011235


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +|+|+....      ....++...+.|++||+++...
T Consensus       218 ~Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          218 VDYVFCTFN------TDMYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             EEEEEESSC------HHHHHHHHHHHEEEEEEEEESS
T ss_pred             ccEEEECCC------chHHHHHHHHHhccCCEEEEEC
Confidence            888775321      3456788999999999997643

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.50  E-value=0.11  Score=46.34  Aligned_cols=98  Identities=10%  Similarity=0.004  Sum_probs=63.7

Q ss_pred             HHhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-CC---
Q 021344          160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF---  233 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p~---  233 (314)
                      +.....++.+||-+|+  |.|..+..+++.. +.+|+++|.++..++.+++.+   +    .. ..+  |..+. .+   
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~---g----~~-~~~--d~~~~~~~~~~  217 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKF---G----FD-DAF--NYKEESDLTAA  217 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTS---C----CS-EEE--ETTSCSCSHHH
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc---C----Cc-eEE--ecCCHHHHHHH
Confidence            3445667899999997  4588777777653 239999999998887776321   1    11 112  33221 11   


Q ss_pred             ----CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 ----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ----~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                          ..+.+|+|+....       ...+....+.|++||++++...
T Consensus       218 ~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          218 LKRCFPNGIDIYFENVG-------GKMLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             HHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             HHHHhCCCCcEEEECCC-------HHHHHHHHHHHhcCCEEEEEcc
Confidence                1235788775432       1368889999999999987654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.10  E-value=0.11  Score=46.48  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=61.9

Q ss_pred             hccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCC-----
Q 021344          162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-----  233 (314)
Q Consensus       162 l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~-----  233 (314)
                      ....++.+||.+|+  |.|..+..+++.. ..+|+++|.++...+.+++.    +    .. ..  .|..+ ..+     
T Consensus       165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~----g----~~-~~--~d~~~~~~~~~~~~  232 (347)
T 2hcy_A          165 ANLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSI----G----GE-VF--IDFTKEKDIVGAVL  232 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHT----T----CC-EE--EETTTCSCHHHHHH
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHc----C----Cc-eE--EecCccHhHHHHHH
Confidence            35667899999998  4577777766653 23999999988777766651    1    11 11  24331 110     


Q ss_pred             --CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 --ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 --~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                        ..+.+|+|+....      ....++.+.+.|++||++++...
T Consensus       233 ~~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          233 KATDGGAHGVINVSV------SEAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HHHTSCEEEEEECSS------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred             HHhCCCCCEEEECCC------cHHHHHHHHHHHhcCCEEEEEeC
Confidence              1125777775432      23568889999999999987654

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.99  E-value=0.12  Score=46.25  Aligned_cols=95  Identities=17%  Similarity=0.226  Sum_probs=62.5

Q ss_pred             hccCCCCeEEEEcCc--ccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344          162 FKSAQGGLLVDVSCG--SGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (314)
Q Consensus       162 l~~~~~~~iLDiGcG--~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----  232 (314)
                      ....++.+||-+|+|  .|..+..+++.  +.  +|+++|.++..++.+++.    +    .. ..+  |..+..     
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga--~Vi~~~~~~~~~~~~~~~----g----~~-~~~--~~~~~~~~~~~  232 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA--TIIGVDVREEAVEAAKRA----G----AD-YVI--NASMQDPLAEI  232 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC--EEEEEESSHHHHHHHHHH----T----CS-EEE--ETTTSCHHHHH
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHh----C----CC-EEe--cCCCccHHHHH
Confidence            556678999999998  46666666554  54  899999999888887652    1    11 112  222211     


Q ss_pred             --CCC-CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 --FAS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 --~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                        ... +.+|+|+....      ....++...+.|++||++++...
T Consensus       233 ~~~~~~~~~d~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          233 RRITESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             HHHTTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred             HHHhcCCCceEEEECCC------CHHHHHHHHHHHhcCCEEEEECC
Confidence              112 46888775432      23467888999999999987654

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.96  E-value=0.14  Score=45.94  Aligned_cols=95  Identities=12%  Similarity=0.064  Sum_probs=62.0

Q ss_pred             HhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC------
Q 021344          161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp------  232 (314)
                      .....++.+||-+|+  |.|..+..+++.. +.+|+++|.+++.++.+++.    +    .. ..  .|..+..      
T Consensus       165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~~--~d~~~~~~~~~~~  232 (351)
T 1yb5_A          165 SACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN----G----AH-EV--FNHREVNYIDKIK  232 (351)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CS-EE--EETTSTTHHHHHH
T ss_pred             hhCCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHc----C----CC-EE--EeCCCchHHHHHH
Confidence            345667899999997  4477776666653 24999999999888776551    1    11 11  2332211      


Q ss_pred             --CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                        .....+|+|+....       ...+....+.|++||++++..
T Consensus       233 ~~~~~~~~D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          233 KYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             HHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             HHcCCCCcEEEEECCC-------hHHHHHHHHhccCCCEEEEEe
Confidence              11235888876543       235778889999999998765

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=93.95  E-value=0.015  Score=40.68  Aligned_cols=30  Identities=23%  Similarity=0.600  Sum_probs=22.7

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ..+.||.||+.+....         ..+.+.|+.|++.|
T Consensus        26 ~~y~Cp~CG~~~v~r~---------atGiW~C~~Cg~~~   55 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDRQ---------GTGIWQCSYCDYKF   55 (83)
T ss_dssp             SCEECSSSCCEEEEEE---------ETTEEEETTTCCEE
T ss_pred             ccCcCCCCCCcceecc---------CCCeEECCCCCCEe
Confidence            3678999999765432         23789999999876

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=93.90  E-value=0.13  Score=45.76  Aligned_cols=90  Identities=13%  Similarity=0.178  Sum_probs=62.6

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCC-CCeE-EEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---CCCchhhh
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGT-YSGV-VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAV  241 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~-~~~v-~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---~~~~fD~V  241 (314)
                      ..+++|+-||.|.+...+...|. ...+ .++|+++.+.+..+.+...        . ++.+|+.++..   +...+|++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------~-~~~~DI~~~~~~~i~~~~~Dil   80 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------E-VQVKNLDSISIKQIESLNCNTW   80 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------C-CBCCCTTTCCHHHHHHTCCCEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------C-cccCChhhcCHHHhccCCCCEE
Confidence            45899999999999999998874 2356 7999999999888887632        1 56788877642   22358998


Q ss_pred             eecchhccC-----------CCHH-HHHHHHHh-hcc
Q 021344          242 HAGAALHCW-----------PSPS-NAVAEISR-ILR  265 (314)
Q Consensus       242 ~~~~vl~h~-----------~d~~-~~l~~i~r-~Lk  265 (314)
                      +...-...+           .|+. .++.++.+ +++
T Consensus        81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~  117 (327)
T 3qv2_A           81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILP  117 (327)
T ss_dssp             EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGG
T ss_pred             EecCCccCcccccCCCCCCCccccchhHHHHHHHHHH
Confidence            865433322           3444 45666666 554

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=93.85  E-value=0.024  Score=38.72  Aligned_cols=39  Identities=31%  Similarity=0.594  Sum_probs=22.4

Q ss_pred             CeeeccCCCccc-----hhcCCCCcccccc-----------ccCceecCCCCccc
Q 021344           59 DLFSCPICYEPL-----IRKGPTGLTLGAI-----------YRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l-----~~~~~~~~~~~~i-----------~~~~l~C~~C~~~~   97 (314)
                      .+-.||+||+++     +.+-..-.+..++           .+-.+.|+.||..|
T Consensus         7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEF   61 (95)
T 2k5c_A            7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEF   61 (95)
T ss_dssp             -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEE
T ss_pred             ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHH
Confidence            466799999975     2111111122222           22367999999887

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.80  E-value=0.077  Score=48.18  Aligned_cols=100  Identities=22%  Similarity=0.254  Sum_probs=64.6

Q ss_pred             Hhc-cCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC---CC----C
Q 021344          161 YFK-SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV---CR----L  231 (314)
Q Consensus       161 ~l~-~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~---~~----l  231 (314)
                      ... ..++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    +    .. .++..+.   .+    +
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~v  259 (380)
T 1vj0_A          189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----G----AD-LTLNRRETSVEERRKAI  259 (380)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----T----CS-EEEETTTSCHHHHHHHH
T ss_pred             hcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----C----Cc-EEEeccccCcchHHHHH
Confidence            345 66789999999776 88888888764224999999999988888752    1    11 1222110   00    0


Q ss_pred             -CC-CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          232 -PF-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 -p~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       .. ....+|+|+-.-.     . ...++...+.|++||++++...
T Consensus       260 ~~~~~g~g~Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          260 MDITHGRGADFILEATG-----D-SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             HHHTTTSCEEEEEECSS-----C-TTHHHHHHHHEEEEEEEEECCC
T ss_pred             HHHhCCCCCcEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence             01 1225888875422     1 2357888899999999987654

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}

Probab=93.78  E-value=0.018  Score=44.37  Aligned_cols=30  Identities=27%  Similarity=0.515  Sum_probs=26.1

Q ss_pred             ccccCceecCCCCccccCccceeeeecccC
Q 021344           82 AIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (314)
Q Consensus        82 ~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (314)
                      .+.++.+.|+.||+.|++++|+++++....
T Consensus       104 ~v~eg~L~C~~cg~~YPI~dGIP~mL~~ea  133 (141)
T 2j6a_A          104 SIAEGEMKCRNCGHIYYIKNGIPNLLLPPH  133 (141)
T ss_dssp             EEEEEEEECTTTCCEEEEETTEESSCCCSS
T ss_pred             eccCCEEECCCCCCcccccCCccCcCCcHH
Confidence            466789999999999999999999987643

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=93.74  E-value=0.11  Score=46.33  Aligned_cols=98  Identities=16%  Similarity=0.093  Sum_probs=63.5

Q ss_pred             HHhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344          160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----  232 (314)
                      +.....++.+||-+|+  |.|..+..+++.. +.+|++++.++...+.+++.    +    .. ..+..+ .++.     
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~v~~~~-~~~~~~v~~  221 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSV----G----AD-IVLPLE-EGWAKAVRE  221 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH----T----CS-EEEESS-TTHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----Cc-EEecCc-hhHHHHHHH
Confidence            4445667899999997  3488888777764 34999999999888877763    1    11 222222 2211     


Q ss_pred             -CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       .....+|+|+....-       ..+....+.|++||++++...
T Consensus       222 ~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          222 ATGGAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             HTTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC--
T ss_pred             HhCCCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEEc
Confidence             112368988854331       247788899999999988653

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.63  E-value=0.13  Score=45.92  Aligned_cols=95  Identities=16%  Similarity=0.086  Sum_probs=63.1

Q ss_pred             ccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--------
Q 021344          163 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (314)
Q Consensus       163 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--------  232 (314)
                      ...++.+||-+|+  |.|..+..+++.. ..+|+++|.++..++.+++.    +    .. ..+  |..+..        
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~----g----a~-~~~--d~~~~~~~~~~~~~  230 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKAL----G----AD-ETV--NYTHPDWPKEVRRL  230 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T----CS-EEE--ETTSTTHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----C----CC-EEE--cCCcccHHHHHHHH
Confidence            4567899999998  4588777777653 23999999999888887652    1    11 112  332211        


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .....+|+|+.... .      ..++.+.+.|++||++++....
T Consensus       231 ~~~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~~  267 (343)
T 2eih_A          231 TGGKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAGAS  267 (343)
T ss_dssp             TTTTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESSCC
T ss_pred             hCCCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEecC
Confidence            11236888876543 1      2477888999999999876543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.57  E-value=0.17  Score=45.18  Aligned_cols=97  Identities=12%  Similarity=0.057  Sum_probs=63.7

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC------
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~------  233 (314)
                      .... ++.+||-+|+|. |..+..+++.....+|+++|.++..++.+++.    +    .. ..+  |..+..+      
T Consensus       163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----G----a~-~~~--~~~~~~~~~~v~~  230 (348)
T 2d8a_A          163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----G----AD-YVI--NPFEEDVVKEVMD  230 (348)
T ss_dssp             TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----T----CS-EEE--CTTTSCHHHHHHH
T ss_pred             hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C----CC-EEE--CCCCcCHHHHHHH
Confidence            3455 788999999975 77888887764223899999999888888752    1    11 112  2221110      


Q ss_pred             --CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 --ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 --~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                        ....+|+|+..-.     . ...++.+.+.|++||+++....
T Consensus       231 ~~~g~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          231 ITDGNGVDVFLEFSG-----A-PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             HTTTSCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             HcCCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEcc
Confidence              1225888775432     2 3457888999999999987654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.50  E-value=0.27  Score=44.20  Aligned_cols=100  Identities=14%  Similarity=0.116  Sum_probs=64.6

Q ss_pred             HHhccCCCCeEEEEc-Cc-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344          160 EYFKSAQGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiG-cG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----  232 (314)
                      +.....++.+||-+| +| .|..+..+++.. +.+|+++|.+++.++.+++.    +    .. ..+..+-.++.     
T Consensus       157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~----G----a~-~~~~~~~~~~~~~~~~  226 (362)
T 2c0c_A          157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSL----G----CD-RPINYKTEPVGTVLKQ  226 (362)
T ss_dssp             HHTCCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CS-EEEETTTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHc----C----Cc-EEEecCChhHHHHHHH
Confidence            444567789999999 34 488888877764 34999999999888887761    1    11 12221111110     


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ...+.+|+|+....     .  ..++.+.+.|++||++++....
T Consensus       227 ~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          227 EYPEGVDVVYESVG-----G--AMFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             HCTTCEEEEEECSC-----T--HHHHHHHHHEEEEEEEEECCCG
T ss_pred             hcCCCCCEEEECCC-----H--HHHHHHHHHHhcCCEEEEEeCC
Confidence            11235788775432     2  4688899999999999876543

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=93.50  E-value=0.19  Score=45.24  Aligned_cols=87  Identities=14%  Similarity=0.110  Sum_probs=57.5

Q ss_pred             CCeEEEEcCcc-cHHHHHHHHh-CCCCeEEEEeCCH---HHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC------C
Q 021344          167 GGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSE---NMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA------S  235 (314)
Q Consensus       167 ~~~iLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~---~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~------~  235 (314)
                      +.+||-+|+|. |..+..+++. |.  +|+++|.++   ..++.+++.          ..+.+  | .+ .+.      .
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~~~----------ga~~v--~-~~-~~~~~~~~~~  244 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL--EVWMANRREPTEVEQTVIEET----------KTNYY--N-SS-NGYDKLKDSV  244 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC--EEEEEESSCCCHHHHHHHHHH----------TCEEE--E-CT-TCSHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCccchHHHHHHHHh----------CCcee--c-hH-HHHHHHHHhC
Confidence            88999999865 6666666654 54  999999987   777776652          12333  3 22 211      1


Q ss_pred             CchhhheecchhccCCCHHHHH-HHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPSPSNAV-AEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l-~~i~r~LkpGG~l~i~~~  275 (314)
                      +.+|+|+....     .+ ..+ +...+.|++||.+++...
T Consensus       245 ~~~d~vid~~g-----~~-~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          245 GKFDVIIDATG-----AD-VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CCEEEEEECCC-----CC-THHHHHHGGGEEEEEEEEECSC
T ss_pred             CCCCEEEECCC-----Ch-HHHHHHHHHHHhcCCEEEEEec
Confidence            45888775432     22 235 888999999999987654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=93.47  E-value=0.33  Score=42.74  Aligned_cols=97  Identities=18%  Similarity=0.131  Sum_probs=60.0

Q ss_pred             HHhccCCCCeEEEEc-Ccc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCCCCC
Q 021344          160 EYFKSAQGGLLVDVS-CGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG  236 (314)
Q Consensus       160 ~~l~~~~~~~iLDiG-cG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~~~~  236 (314)
                      +.....++.+||-+| +|. |.++..+++.. +.+|++++ ++...+.+++.    +    .. ..+..+-.+ ..-.-.
T Consensus       146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~l----G----a~-~~i~~~~~~~~~~~~~  214 (321)
T 3tqh_A          146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKAL----G----AE-QCINYHEEDFLLAIST  214 (321)
T ss_dssp             HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHHH----T----CS-EEEETTTSCHHHHCCS
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHHc----C----CC-EEEeCCCcchhhhhcc
Confidence            455677899999997 565 88888888774 34899998 55556666552    2    11 122211111 111113


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+|+|+-.-.     .  ..+....+.|++||+++...
T Consensus       215 g~D~v~d~~g-----~--~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          215 PVDAVIDLVG-----G--DVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             CEEEEEESSC-----H--HHHHHHGGGEEEEEEEEECC
T ss_pred             CCCEEEECCC-----c--HHHHHHHHhccCCCEEEEeC
Confidence            5888775322     2  23488899999999998764

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=93.41  E-value=0.14  Score=45.63  Aligned_cols=95  Identities=14%  Similarity=0.032  Sum_probs=62.2

Q ss_pred             HHhccCCCCeEEEEcC-c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344          160 EYFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----  232 (314)
                      +.....++.+||-+|+ | .|..+..+++.. ..+|+++ .++..++.+++.    +      ...+. +-.+..     
T Consensus       144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~l----G------a~~i~-~~~~~~~~~~~  210 (343)
T 3gaz_A          144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDL----G------ATPID-ASREPEDYAAE  210 (343)
T ss_dssp             TTTCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHH----T------SEEEE-TTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHc----C------CCEec-cCCCHHHHHHH
Confidence            3455678899999994 4 488888887764 3499999 888888877652    1      22222 222111     


Q ss_pred             -CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                       .....+|+|+-.-.     .  ..+....+.|++||.+++..
T Consensus       211 ~~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          211 HTAGQGFDLVYDTLG-----G--PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             HHTTSCEEEEEESSC-----T--HHHHHHHHHEEEEEEEEESC
T ss_pred             HhcCCCceEEEECCC-----c--HHHHHHHHHHhcCCeEEEEc
Confidence             11236888775332     2  46888889999999998754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.30  E-value=0.64  Score=35.41  Aligned_cols=91  Identities=11%  Similarity=0.098  Sum_probs=60.2

Q ss_pred             CCeEEEEcCcc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC----CCCchhh
Q 021344          167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDA  240 (314)
Q Consensus       167 ~~~iLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~----~~~~fD~  240 (314)
                      ..+|+=+|+|. |. ++..|.+.+.  +|+++|.+++.++.+++          .++.++.+|..+...    .-..+|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~----------~g~~~i~gd~~~~~~l~~a~i~~ad~   74 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRE----------RGVRAVLGNAANEEIMQLAHLECAKW   74 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHH----------cCCCEEECCCCCHHHHHhcCcccCCE
Confidence            45799999987 54 3445555555  99999999998887775          467789999865321    1235676


Q ss_pred             heecchhccCCCHH--HHHHHHHhhcccCcEEEEEe
Q 021344          241 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       241 V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+..     +++..  ..+-...+.+.|+..++...
T Consensus        75 vi~~-----~~~~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           75 LILT-----IPNGYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             EEEC-----CSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             EEEE-----CCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence            6643     23333  23444566677888877655

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=93.28  E-value=0.041  Score=35.72  Aligned_cols=31  Identities=13%  Similarity=0.358  Sum_probs=21.5

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ..+.||.|++.....+.        ..+.+.|..||.++
T Consensus        10 ~~~~Cp~C~~~~lv~D~--------~~ge~vC~~CGlVl   40 (58)
T 1dl6_A           10 PRVTCPNHPDAILVEDY--------RAGDMICPECGLVV   40 (58)
T ss_dssp             SCCSBTTBSSSCCEECS--------SSCCEECTTTCCEE
T ss_pred             ccccCcCCCCCceeEeC--------CCCeEEeCCCCCEE
Confidence            44579999984333221        33789999998776

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.17  E-value=0.089  Score=46.98  Aligned_cols=96  Identities=8%  Similarity=0.109  Sum_probs=62.7

Q ss_pred             ccCCCCeEEEEcCcc-cHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe----cC-CCCCCCC
Q 021344          163 KSAQGGLLVDVSCGS-GLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DV-CRLPFAS  235 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~-G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~----d~-~~lp~~~  235 (314)
                      .. ++.+||-+|+|. |.++..+++.. ++.+|+++|.++..++.+++.    +   .+  .++..    |. ..+. ..
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----G---a~--~vi~~~~~~~~~~~~~-~g  236 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----G---AD--YVSEMKDAESLINKLT-DG  236 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----T---CS--EEECHHHHHHHHHHHH-TT
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----C---CC--EEeccccchHHHHHhh-cC
Confidence            55 789999999976 77777777653 134899999999988888763    1   11  11211    10 0111 12


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ..+|+|+..-.     . ...++...+.|++||++++...
T Consensus       237 ~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          237 LGASIAIDLVG-----T-EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             CCEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCccEEEECCC-----C-hHHHHHHHHHhhcCCEEEEeCC
Confidence            26888875432     2 3468888999999999987654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.15  E-value=0.22  Score=44.64  Aligned_cols=97  Identities=13%  Similarity=0.052  Sum_probs=63.3

Q ss_pred             HHhccCCCCeEEEEc-Cc-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC----
Q 021344          160 EYFKSAQGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----  233 (314)
Q Consensus       160 ~~l~~~~~~~iLDiG-cG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~----  233 (314)
                      +.....++.+||-+| +| .|..+..+++.. +.+|+++|.++..++.+++.    +    .. ..+  |..+..+    
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~~--~~~~~~~~~~~  228 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERL----G----AK-RGI--NYRSEDFAAVI  228 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T----CS-EEE--ETTTSCHHHHH
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----CC-EEE--eCCchHHHHHH
Confidence            344566789999995 33 488777777764 34999999999988888763    1    11 122  2222111    


Q ss_pred             ---CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 ---ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ---~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         ..+.+|+|+....-       ..+....+.|++||++++...
T Consensus       229 ~~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          229 KAETGQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             HHHHSSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred             HHHhCCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence               12458888754331       257788899999999987654

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=93.13  E-value=0.38  Score=44.69  Aligned_cols=97  Identities=15%  Similarity=0.199  Sum_probs=63.3

Q ss_pred             hccCCCCeEEEEcC-cc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-------
Q 021344          162 FKSAQGGLLVDVSC-GS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (314)
Q Consensus       162 l~~~~~~~iLDiGc-G~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-------  232 (314)
                      ....++.+||-+|+ |. |.++..+++.. ..++++++.++..++.+++.    +    . -.++...-.+..       
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~l----G----a-~~vi~~~~~d~~~~~~~~~  293 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAM----G----A-EAIIDRNAEGYRFWKDENT  293 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T----C-CEEEETTTTTCCSEEETTE
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhh----C----C-cEEEecCcCcccccccccc
Confidence            35567899999997 43 88888888764 34899999999988888663    1    1 112211111110       


Q ss_pred             ----------------CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 ----------------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ----------------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                                      .....+|+|+-.-.       ...+....+.|++||++++...
T Consensus       294 ~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G~  345 (456)
T 3krt_A          294 QDPKEWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTCAS  345 (456)
T ss_dssp             ECHHHHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEESCC
T ss_pred             cchHHHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEEec
Confidence                            01236887775322       2568888999999999988653

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.09  E-value=0.19  Score=44.36  Aligned_cols=92  Identities=14%  Similarity=0.109  Sum_probs=60.2

Q ss_pred             eEEEEcC-c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCCCCCchhhheecc
Q 021344          169 LLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAGA  245 (314)
Q Consensus       169 ~iLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~~~~~fD~V~~~~  245 (314)
                      +||-+|+ | .|.++..+++.. +.+|+++|.++...+.+++.    +    ....+-..+... .....+.+|+|+-. 
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~~vi~~~~~~~~~~~~~~~~d~v~d~-  218 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSL----G----ANRILSRDEFAESRPLEKQLWAGAIDT-  218 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH----T----CSEEEEGGGSSCCCSSCCCCEEEEEES-
T ss_pred             eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----CCEEEecCCHHHHHhhcCCCccEEEEC-
Confidence            4999997 4 488888888874 34999999999888888763    1    111111111111 11224568877643 


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                          ...  ..+....+.|+++|++++....
T Consensus       219 ----~g~--~~~~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          219 ----VGD--KVLAKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             ----SCH--HHHHHHHHTEEEEEEEEECCCT
T ss_pred             ----CCc--HHHHHHHHHHhcCCEEEEEecC
Confidence                222  3789999999999999887543

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=92.97  E-value=0.15  Score=45.37  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=50.5

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-CCchhhheec
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG  244 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~  244 (314)
                      +.+++|+.||.|.+...+...|. ..+.++|+++.+++..+.+....      .    .+|+.++... -..+|+|+..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~~------~----~~Di~~~~~~~~~~~D~l~~g   78 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK------P----EGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC------C----BSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCC------C----cCCHHHcCHhhCCCCCEEEEC
Confidence            46899999999999999999884 36889999999999988876421      1    5777654311 1258888875

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=92.96  E-value=0.059  Score=48.50  Aligned_cols=99  Identities=11%  Similarity=0.093  Sum_probs=62.3

Q ss_pred             hccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC-CC--CCCCCc
Q 021344          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RL--PFASGF  237 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~l--p~~~~~  237 (314)
                      ....++.+||-+|+|. |.++..+++.. +.+|+++|.++..++.+++.    +   ..  .++..+-. +.  ... +.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~l----G---a~--~v~~~~~~~~~~~~~~-~~  243 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM----G---AD--HYIATLEEGDWGEKYF-DT  243 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH----T---CS--EEEEGGGTSCHHHHSC-SC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc----C---CC--EEEcCcCchHHHHHhh-cC
Confidence            4567789999999875 77777777753 23899999998888888762    1   11  12221111 10  011 46


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +|+|+..-.-.    ....++...+.|++||+++....
T Consensus       244 ~D~vid~~g~~----~~~~~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          244 FDLIVVCASSL----TDIDFNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             EEEEEECCSCS----TTCCTTTGGGGEEEEEEEEECCC
T ss_pred             CCEEEECCCCC----cHHHHHHHHHHhcCCCEEEEecC
Confidence            88887543210    01235667789999999987543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=92.54  E-value=0.15  Score=44.62  Aligned_cols=72  Identities=14%  Similarity=0.015  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC----CCchh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----SGFVD  239 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~----~~~fD  239 (314)
                      ....+++|+-||.|.+...+.+.|.... +.++|+++.+.+..+.+.        ....++.+|+.++...    .+.+|
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~--------~~~~~~~~DI~~i~~~~i~~~~~~D   85 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH--------QGKIMYVGDVRSVTQKHIQEWGPFD   85 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT--------TTCEEEECCGGGCCHHHHHHTCCCS
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC--------CCCceeCCChHHccHHHhcccCCcC
Confidence            3456899999999999999999886433 699999999888776643        3446788898776421    13589


Q ss_pred             hheec
Q 021344          240 AVHAG  244 (314)
Q Consensus       240 ~V~~~  244 (314)
                      +++..
T Consensus        86 ll~gg   90 (295)
T 2qrv_A           86 LVIGG   90 (295)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            88864

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=92.39  E-value=0.046  Score=34.28  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=22.4

Q ss_pred             cCCCCeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ......--||.||+......         ....+.|.+||..+
T Consensus        14 kv~~~~k~CP~CG~~~fm~~---------~~~R~~C~kCG~t~   47 (50)
T 3j20_Y           14 KVIRKNKFCPRCGPGVFMAD---------HGDRWACGKCGYTE   47 (50)
T ss_dssp             CEECSSEECSSSCSSCEEEE---------CSSEEECSSSCCEE
T ss_pred             EEEEecccCCCCCCceEEec---------CCCeEECCCCCCEE
Confidence            33444556999999653321         12679999998765

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.35  E-value=0.26  Score=43.44  Aligned_cols=95  Identities=12%  Similarity=0.119  Sum_probs=61.8

Q ss_pred             HhccCCCCeEEEEcC--cccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344          161 YFKSAQGGLLVDVSC--GSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGc--G~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----  232 (314)
                      .....++.+||-+|+  |.|..+..+++. |.  +|+++|.++..++.+++.    +    .. ..+  |..+..     
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~--~V~~~~~~~~~~~~~~~~----g----~~-~~~--~~~~~~~~~~~  201 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKA----G----AW-QVI--NYREEDLVERL  201 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH----T----CS-EEE--ETTTSCHHHHH
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHc----C----CC-EEE--ECCCccHHHHH
Confidence            345667899999994  447766666554 54  999999999888877652    1    11 112  332211     


Q ss_pred             ---CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         .....+|+|+....       ...++...+.|++||++++...
T Consensus       202 ~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          202 KEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             HHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred             HHHhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence               11235888875533       2457888999999999987654

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=92.28  E-value=0.087  Score=47.37  Aligned_cols=97  Identities=16%  Similarity=0.119  Sum_probs=59.7

Q ss_pred             hccC-CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---CCCCCC
Q 021344          162 FKSA-QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASG  236 (314)
Q Consensus       162 l~~~-~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---lp~~~~  236 (314)
                      .... ++.+||-+|+|. |.++..+++.. ..+|+++|.+++.++.+++.+   +   ...  ++  |..+   +.-..+
T Consensus       175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~l---G---a~~--vi--~~~~~~~~~~~~~  243 (357)
T 2cf5_A          175 FGLKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDL---G---ADD--YV--IGSDQAKMSELAD  243 (357)
T ss_dssp             TSTTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTS---C---CSC--EE--ETTCHHHHHHSTT
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHc---C---Cce--ee--ccccHHHHHHhcC
Confidence            3455 789999999876 77777777763 238999999987777665321   1   111  11  1111   000013


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .+|+|+-.-.-.      ..++...+.|++||+++....
T Consensus       244 g~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          244 SLDYVIDTVPVH------HALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             TEEEEEECCCSC------CCSHHHHTTEEEEEEEEECSC
T ss_pred             CCCEEEECCCCh------HHHHHHHHHhccCCEEEEeCC
Confidence            588877532211      125667789999999988654

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=92.26  E-value=0.63  Score=41.54  Aligned_cols=99  Identities=11%  Similarity=-0.018  Sum_probs=63.5

Q ss_pred             HHhccCCC--CeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---
Q 021344          160 EYFKSAQG--GLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (314)
Q Consensus       160 ~~l~~~~~--~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---  232 (314)
                      +.....++  .+||-.|+  |.|..+..+++.....+|+++|.++..++.+++.+   +    .. ..  .|..+..   
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g----~~-~~--~d~~~~~~~~  221 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---G----FD-AA--INYKKDNVAE  221 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---C----CS-EE--EETTTSCHHH
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---C----Cc-eE--EecCchHHHH
Confidence            44556678  89999998  34777777776542238999999988777665421   1    11 11  2332211   


Q ss_pred             ----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                          ...+.+|+|+....       ...++...+.|++||++++...
T Consensus       222 ~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          222 QLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             HHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence                11125787775433       2568889999999999987654

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=92.25  E-value=0.37  Score=43.82  Aligned_cols=77  Identities=13%  Similarity=0.147  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCch
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSG-------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~-------~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~f  238 (314)
                      ..-.|+|+|.|.|.++..+.+..       ...+++.||+|+...+.=++.+...     .++.+. .++.++|.  + .
T Consensus        80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~-----~~v~W~-~~l~~lp~--~-~  150 (387)
T 1zkd_A           80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVPE--G-P  150 (387)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSCC--S-S
T ss_pred             CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-----CCeEEe-CChhhcCC--C-C
Confidence            34579999999999987776531       2348999999998776555544321     245554 23344441  1 3


Q ss_pred             hhheecchhccCC
Q 021344          239 DAVHAGAALHCWP  251 (314)
Q Consensus       239 D~V~~~~vl~h~~  251 (314)
                      -+|+++.+|.-+|
T Consensus       151 ~~viANE~fDAlP  163 (387)
T 1zkd_A          151 AVILANEYFDVLP  163 (387)
T ss_dssp             EEEEEESSGGGSC
T ss_pred             eEEEeccccccCc
Confidence            3555665555543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=92.23  E-value=0.31  Score=43.66  Aligned_cols=96  Identities=10%  Similarity=-0.016  Sum_probs=61.6

Q ss_pred             HhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC------
Q 021344          161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp------  232 (314)
                      .....++.+||-+|+  |.|..+..+++.. +.+|+++|.++..++.+++.    +    .. ..  .|..+..      
T Consensus       157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----~~-~~--~~~~~~~~~~~~~  224 (354)
T 2j8z_A          157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKL----G----AA-AG--FNYKKEDFSEATL  224 (354)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH----T----CS-EE--EETTTSCHHHHHH
T ss_pred             hcCCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----Cc-EE--EecCChHHHHHHH
Confidence            345567899999984  4477776666653 34999999999888887542    1    11 11  2322211      


Q ss_pred             --CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                        ...+.+|+|+....     .+  .+....+.|++||++++...
T Consensus       225 ~~~~~~~~d~vi~~~G-----~~--~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          225 KFTKGAGVNLILDCIG-----GS--YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             HHTTTSCEEEEEESSC-----GG--GHHHHHHHEEEEEEEEECCC
T ss_pred             HHhcCCCceEEEECCC-----ch--HHHHHHHhccCCCEEEEEec
Confidence              11235888775433     12  47778899999999988654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=91.97  E-value=0.13  Score=45.94  Aligned_cols=96  Identities=13%  Similarity=0.049  Sum_probs=62.3

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC------
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~------  233 (314)
                      .... ++.+||-+|+|. |..+..+++.....+|+++|.++..++.+++. .         -..  .|..+..+      
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a---------~~v--~~~~~~~~~~~~~~  226 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A---------DRL--VNPLEEDLLEVVRR  226 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C---------SEE--ECTTTSCHHHHHHH
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H---------Hhc--cCcCccCHHHHHHH
Confidence            4455 788999999865 77888888764223899999999877776552 1         011  12221110      


Q ss_pred             -CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       ..+.+|+|+..-     .. ...++...+.|++||++++...
T Consensus       227 ~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          227 VTGSGVEVLLEFS-----GN-EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             HHSSCEEEEEECS-----CC-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             hcCCCCCEEEECC-----CC-HHHHHHHHHHHhcCCEEEEEec
Confidence             123578776432     22 2457888999999999987653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.86  E-value=1.5  Score=33.16  Aligned_cols=90  Identities=17%  Similarity=0.132  Sum_probs=55.9

Q ss_pred             CCeEEEEcCcc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCCCchhh
Q 021344          167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (314)
Q Consensus       167 ~~~iLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~~~~~fD~  240 (314)
                      ..+|+-+|+|. |. ++..|.+.+.  +|+++|.++..++.+++          ..+.++.+|..+..    ..-..+|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~----------~~~~~~~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLED----------EGFDAVIADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHH----------CCCcEEECCCCCHHHHHhCCcccCCE
Confidence            45799999976 44 4445555565  89999999988877765          35678889986632    11235777


Q ss_pred             heecchhccCCCHH--HHHHHHHhhcccCcEEEEEe
Q 021344          241 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       241 V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+..-     ++..  ..+....+.+. ...++...
T Consensus        74 vi~~~-----~~~~~n~~~~~~a~~~~-~~~iia~~  103 (141)
T 3llv_A           74 VLITG-----SDDEFNLKILKALRSVS-DVYAIVRV  103 (141)
T ss_dssp             EEECC-----SCHHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred             EEEec-----CCHHHHHHHHHHHHHhC-CceEEEEE
Confidence            76532     2332  23344445555 55555544

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.70  E-value=0.73  Score=36.74  Aligned_cols=91  Identities=13%  Similarity=0.165  Sum_probs=57.4

Q ss_pred             CCeEEEEcCcc-cH-HHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----C-CCCch
Q 021344          167 GGLLVDVSCGS-GL-FSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----F-ASGFV  238 (314)
Q Consensus       167 ~~~iLDiGcG~-G~-~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~-~~~~f  238 (314)
                      +.+|+-+|+|. |. ++..|.+. +.  +|+++|.++..++.+++          .++..+.+|..+..    . .-..+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~~----------~g~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHRS----------EGRNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHHH----------TTCCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHHH----------CCCCEEEcCCCCHHHHHhccCCCCC
Confidence            56899999986 54 44555666 65  89999999988777654          34566777875421    1 12357


Q ss_pred             hhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEe
Q 021344          239 DAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+|+..     +++..  ..+-...+.+.|++.++...
T Consensus       107 d~vi~~-----~~~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          107 KLVLLA-----MPHHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CEEEEC-----CSSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CEEEEe-----CCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            877753     23332  22334455666777877755

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=91.53  E-value=0.072  Score=34.36  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             eeeccCCCccchhc-CCCCccccccccCceecCCCCcccc
Q 021344           60 LFSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYS   98 (314)
Q Consensus        60 ~l~CP~C~~~l~~~-~~~~~~~~~i~~~~l~C~~C~~~~~   98 (314)
                      ...||.||...... ..+....++.+.-.+.|.+||+.|.
T Consensus        15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~   54 (57)
T 1qyp_A           15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR   54 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred             EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence            67899999853211 1011123344556789999998874

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=91.46  E-value=0.17  Score=45.64  Aligned_cols=97  Identities=19%  Similarity=0.184  Sum_probs=59.8

Q ss_pred             hccC-CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCCC
Q 021344          162 FKSA-QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASG  236 (314)
Q Consensus       162 l~~~-~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l---p~~~~  236 (314)
                      .... ++.+||-+|+|. |..+..+++.. +.+|+++|.++..++.+++.+   +    .. ..+  |..+.   .-..+
T Consensus       182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~l---G----a~-~v~--~~~~~~~~~~~~~  250 (366)
T 1yqd_A          182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNF---G----AD-SFL--VSRDQEQMQAAAG  250 (366)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTS---C----CS-EEE--ETTCHHHHHHTTT
T ss_pred             cCcCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhc---C----Cc-eEE--eccCHHHHHHhhC
Confidence            3455 788999999876 77777777764 349999999988777665321   1    11 122  22211   00013


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .+|+|+..-...      ..++...+.|++||+++....
T Consensus       251 ~~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          251 TLDGIIDTVSAV------HPLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             CEEEEEECCSSC------CCSHHHHHHEEEEEEEEECCC
T ss_pred             CCCEEEECCCcH------HHHHHHHHHHhcCCEEEEEcc
Confidence            588887543211      125567788999999887654

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=91.45  E-value=0.12  Score=46.24  Aligned_cols=69  Identities=16%  Similarity=0.160  Sum_probs=51.3

Q ss_pred             CeEEEEcCcccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCchhhhee
Q 021344          168 GLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHA  243 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~fD~V~~  243 (314)
                      -+++|+-||.|.+...+...|.. ..+.++|+++.+.+..+.+..        ...++.+|+.++.   ++...+|+++.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~--------~~~~~~~DI~~~~~~~~~~~~~D~l~g   75 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP--------ETNLLNRNIQQLTPQVIKKWNVDTILM   75 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------TSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC--------CCceeccccccCCHHHhccCCCCEEEe
Confidence            47999999999999999988742 357899999999888877642        3346678887653   22235888886


Q ss_pred             c
Q 021344          244 G  244 (314)
Q Consensus       244 ~  244 (314)
                      .
T Consensus        76 g   76 (333)
T 4h0n_A           76 S   76 (333)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5

Probab=91.28  E-value=0.11  Score=39.04  Aligned_cols=31  Identities=23%  Similarity=0.561  Sum_probs=25.1

Q ss_pred             CCeeeccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (314)
                      ..+-.||.|+++..-.+.          ..+.|+.|++.|.
T Consensus        25 ~~lP~CP~C~seytYeDg----------~l~vCPeC~hEW~   55 (138)
T 2akl_A           25 STLPPCPQCNSEYTYEDG----------ALLVCPECAHEWS   55 (138)
T ss_dssp             CCSCCCTTTCCCCCEECS----------SSEEETTTTEEEC
T ss_pred             ccCCCCCCCCCcceEecC----------CeEECCccccccC
Confidence            346779999999866554          5799999999994

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=91.13  E-value=0.36  Score=43.52  Aligned_cols=93  Identities=15%  Similarity=0.098  Sum_probs=57.9

Q ss_pred             cCCCCeEEEEc-Ccc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----CCC
Q 021344          164 SAQGGLLVDVS-CGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----ASG  236 (314)
Q Consensus       164 ~~~~~~iLDiG-cG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~~~  236 (314)
                      ..++.+||-+| +|. |..+..+++.. +.+|++++ ++...+.+++    .+    .. ..+  |..+..+     ..+
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~----lG----a~-~v~--~~~~~~~~~~~~~~~  247 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRK----LG----AD-DVI--DYKSGSVEEQLKSLK  247 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHH----TT----CS-EEE--ETTSSCHHHHHHTSC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHH----cC----CC-EEE--ECCchHHHHHHhhcC
Confidence            56789999999 454 88888887764 34899998 6666666644    11    11 112  2221111     113


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+|+|+-.     ...+...+....+.|++||+++...
T Consensus       248 g~D~vid~-----~g~~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          248 PFDFILDN-----VGGSTETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             CBSEEEES-----SCTTHHHHGGGGBCSSSCCEEEESC
T ss_pred             CCCEEEEC-----CCChhhhhHHHHHhhcCCcEEEEeC
Confidence            57877643     2333345677888999999998765

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=91.08  E-value=0.11  Score=34.93  Aligned_cols=30  Identities=23%  Similarity=0.692  Sum_probs=21.8

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .-+.||.|+..-.....         .+++.|..|+..+
T Consensus        25 ~ky~C~fCgk~~vkR~a---------~GIW~C~~C~~~~   54 (72)
T 3jyw_9           25 ARYDCSFCGKKTVKRGA---------AGIWTCSCCKKTV   54 (72)
T ss_dssp             SCBCCSSCCSSCBSBCS---------SSCBCCSSSCCCC
T ss_pred             cCccCCCCCCceeEecC---------CCeEECCCCCCEE
Confidence            35679999987543222         2789999998776

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=90.98  E-value=0.96  Score=38.25  Aligned_cols=101  Identities=21%  Similarity=0.299  Sum_probs=66.5

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      .++++|-.|++.|-   .+..|++.|.  +|+.+|.++..++...+.+.       .++.++.+|+.+...         
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~   77 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-------PRVHALRSDIADLNEIAVLGAAAG   77 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-------CcceEEEccCCCHHHHHHHHHHHH
Confidence            46789999987653   5666777776  99999999887776665441       578899999876421         


Q ss_pred             -CCCchhhheecchhccCC-----CH--------------HHHHHHHHhhcccCcEEEEEec
Q 021344          234 -ASGFVDAVHAGAALHCWP-----SP--------------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       .-+..|+++.+..+....     ++              ..+.+.+.+.++++|.++....
T Consensus        78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence             013578877654433221     11              1245666677777888776553

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.85  E-value=1.2  Score=38.00  Aligned_cols=103  Identities=20%  Similarity=0.199  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCC------------HHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s------------~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .++++|-.|++.|-   .+..|++.|.  +|+.+|.+            ...++.+...+...+    .++.++.+|+.+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~   82 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG----RKAYTAEVDVRD   82 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT----SCEEEEECCTTC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcC----CceEEEEccCCC
Confidence            46789999987652   5666777776  99999987            666666666555543    689999999976


Q ss_pred             CCC-----C-----CCchhhheecchhccCC---CH--------------HHHHHHHHhhcccCcEEEEEe
Q 021344          231 LPF-----A-----SGFVDAVHAGAALHCWP---SP--------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 lp~-----~-----~~~fD~V~~~~vl~h~~---d~--------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ...     .     -+..|+++.+..+....   +.              ..+++.+.+.++.+|.++...
T Consensus        83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           83 RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            421     0     13678888765543221   11              134566777777888877655

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=90.74  E-value=0.78  Score=42.36  Aligned_cols=98  Identities=19%  Similarity=0.160  Sum_probs=62.4

Q ss_pred             hccCCCCeEEEEcC-c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE--ecCCCC------
Q 021344          162 FKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR--ADVCRL------  231 (314)
Q Consensus       162 l~~~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~--~d~~~l------  231 (314)
                      ....++.+||-+|+ | .|..+..+++.. ..++++++.++..++.+++.    +    ....+..  .|....      
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~l----G----a~~~i~~~~~~~~~~~~~~~~  286 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRAL----G----CDLVINRAELGITDDIADDPR  286 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CCCEEEHHHHTCCTTGGGCHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----CCEEEeccccccccccccccc
Confidence            45667899999997 4 388887777764 34899999999888888652    1    1111111  111000      


Q ss_pred             --------------CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          232 --------------PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       232 --------------p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                                    ......+|+|+-...     .  ..++...+.|++||.+++...
T Consensus       287 ~~~~~~~~~~~~v~~~~g~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          287 RVVETGRKLAKLVVEKAGREPDIVFEHTG-----R--VTFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSEEEECSC-----H--HHHHHHHHHSCTTCEEEESCC
T ss_pred             ccchhhhHHHHHHHHHhCCCceEEEECCC-----c--hHHHHHHHHHhcCCEEEEEec
Confidence                          001235888775432     1  357888899999999988653

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=90.66  E-value=0.25  Score=43.63  Aligned_cols=96  Identities=13%  Similarity=0.069  Sum_probs=59.4

Q ss_pred             ccCCCC-eEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cC-CC--CCCCC
Q 021344          163 KSAQGG-LLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV-CR--LPFAS  235 (314)
Q Consensus       163 ~~~~~~-~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~-~~--lp~~~  235 (314)
                      ...++. +||-+|+  |.|..+..+++.. +.+|++++.+++.++.+++.    +   ...  .+.. +. .+  .....
T Consensus       145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l----G---a~~--~i~~~~~~~~~~~~~~~  214 (328)
T 1xa0_A          145 GLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVL----G---AKE--VLAREDVMAERIRPLDK  214 (328)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHT----T---CSE--EEECC---------CCS
T ss_pred             CCCCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc----C---CcE--EEecCCcHHHHHHHhcC
Confidence            344554 8999997  4488888887764 34899999998877777652    1   111  1111 11 00  01123


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +.+|+|+-.-.     .  ..+....+.|++||++++...
T Consensus       215 ~~~d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          215 QRWAAAVDPVG-----G--RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             CCEEEEEECST-----T--TTHHHHHHTEEEEEEEEECSC
T ss_pred             CcccEEEECCc-----H--HHHHHHHHhhccCCEEEEEee
Confidence            46888775432     2  247788899999999987654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=90.65  E-value=1.6  Score=38.37  Aligned_cols=78  Identities=15%  Similarity=0.205  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      .+++||-.|++.|-   ++..|++.|.  +|++++.++..++.+.+.+...+  ...++.++.+|+.+...         
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEG--SGPEVMGVQLDVASREGFKMAADEVE   82 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            46789999987653   5666777776  99999999988887777666543  12378999999976320         


Q ss_pred             -CCCchhhheecchh
Q 021344          234 -ASGFVDAVHAGAAL  247 (314)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (314)
                       .-+..|+++.+..+
T Consensus        83 ~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           83 ARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHTCCEEEEEECCCC
T ss_pred             HhCCCCCEEEECCCc
Confidence             01357888876554

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=90.60  E-value=0.42  Score=44.04  Aligned_cols=46  Identities=11%  Similarity=0.244  Sum_probs=35.1

Q ss_pred             CCeEEEEcCcccHHHHHHHHh----CC-CCeEEEEeCCHHHHHHHHHHHHh
Q 021344          167 GGLLVDVSCGSGLFSRKFAKS----GT-YSGVVALDFSENMLRQCYDFIKQ  212 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~----~~-~~~v~giD~s~~~~~~a~~~~~~  212 (314)
                      ...|+|+|.|.|.++..+.+.    .+ ..+++.||+|+...+.=++++..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            468999999999987776543    21 23799999999887777777654

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=90.47  E-value=0.087  Score=32.98  Aligned_cols=40  Identities=18%  Similarity=0.376  Sum_probs=24.9

Q ss_pred             CCeeeccCCCccchh-cCCCCccccccccCceecCCCCccc
Q 021344           58 GDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .....||.|+..... ........++.+.-.+.|.+||+.|
T Consensus         7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w   47 (50)
T 1tfi_A            7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence            456789999985321 0111123344555688999999876

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.32  E-value=2  Score=36.45  Aligned_cols=105  Identities=21%  Similarity=0.239  Sum_probs=67.6

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC--------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~-s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~--------  233 (314)
                      .++++|-.|++.|-   .+..|++.|.  +|+.++. +....+...+.++..+    .++.++.+|+.+...        
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~   90 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG----SDAIAIKADIRQVPEIVKLFDQA   90 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHHHHHH
Confidence            46788988877653   5666777776  8888775 4555666555555543    678999999976421        


Q ss_pred             --CCCchhhheecchhccCC-----CH--------------HHHHHHHHhhcccCcEEEEEecc
Q 021344          234 --ASGFVDAVHAGAALHCWP-----SP--------------SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 --~~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                        .-+..|+++.+..+.+..     ++              ..+.+.+.+.++++|.++.....
T Consensus        91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  154 (270)
T 3is3_A           91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN  154 (270)
T ss_dssp             HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence              013578887655443321     11              13466777888888888776543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=90.29  E-value=0.22  Score=48.79  Aligned_cols=108  Identities=17%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhC------------CCCeEEEEeC---CHHHHHHHHH-----------HHHhcCCC---
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSG------------TYSGVVALDF---SENMLRQCYD-----------FIKQDNTI---  216 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~------------~~~~v~giD~---s~~~~~~a~~-----------~~~~~~~~---  216 (314)
                      +.-+|||+|-|+|.+.....+..            ....++++|.   +.+.+..+-+           ....-...   
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            34589999999999765554431            1235899998   7777664432           11111000   


Q ss_pred             --------CCCCeEEEEecCCC-CC-C--C-CCchhhheecchhccCCCH----HHHHHHHHhhcccCcEEEEEe
Q 021344          217 --------LTSNLALVRADVCR-LP-F--A-SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       217 --------~~~~v~~~~~d~~~-lp-~--~-~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpGG~l~i~~  274 (314)
                              ....+++..+|+.+ ++ +  . ...||+++... +.--.+|    ..+++.+.++++|||.+...+
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLATFT  219 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-SCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-CCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence                    01335566677643 22 1  1 35799998743 2212234    478999999999999976443

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=90.23  E-value=1.8  Score=37.40  Aligned_cols=103  Identities=17%  Similarity=0.249  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHH-HHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC--------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSEN-MLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~-~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~--------  233 (314)
                      .++++|-.|++.|-   ++..|++.|.  +|+.++.+.. ..+...+..+..+    .++.++.+|+.+...        
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~  119 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKEG----VKCVLLPGDLSDEQHCKDIVQET  119 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT----CCEEEEESCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHHH
Confidence            46789999987652   5666777776  8999998754 3444444444433    688999999976320        


Q ss_pred             --CCCchhhheecchhccCC------CH--------------HHHHHHHHhhcccCcEEEEEe
Q 021344          234 --ASGFVDAVHAGAALHCWP------SP--------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 --~~~~fD~V~~~~vl~h~~------d~--------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                        .-+..|+++.+....+..      +.              ..+++.+.+.++.+|.++...
T Consensus       120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence              013578887654332211      11              135667777888888877655

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.19  E-value=1.3  Score=40.69  Aligned_cols=93  Identities=14%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             CCeEEEEcCcc-cHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCCCchhh
Q 021344          167 GGLLVDVSCGS-GLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (314)
Q Consensus       167 ~~~iLDiGcG~-G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~~~~~fD~  240 (314)
                      ..+|+-+|+|. |.. +..|.+.+.  .|+++|.++..++.+++          .++.++.+|..+..    ..-+..|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~--~vvvId~d~~~v~~~~~----------~g~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV--KMVVLDHDPDHIETLRK----------FGMKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEECCHHHHHHHHH----------TTCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHh----------CCCeEEEcCCCCHHHHHhcCCCccCE
Confidence            45799999876 543 344444454  89999999999988876          45678999987742    12235776


Q ss_pred             heecchhccCCCHH--HHHHHHHhhcccCcEEEEEecc
Q 021344          241 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       241 V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      |++.-     ++..  ..+....+.+.|...++.....
T Consensus        72 viv~~-----~~~~~n~~i~~~ar~~~p~~~Iiara~~  104 (413)
T 3l9w_A           72 LINAI-----DDPQTNLQLTEMVKEHFPHLQIIARARD  104 (413)
T ss_dssp             EEECC-----SSHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             EEECC-----CChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            66532     3443  3455666777888888776643

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=90.02  E-value=2.3  Score=36.47  Aligned_cols=77  Identities=17%  Similarity=0.174  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-CC--------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF--------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p~--------  233 (314)
                      .++++|-.|++.|-   ++..|++.|.  +|++++.++...+.+.+.+...+   ..++.++.+|+.+. ..        
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~~v~~~~~~~   85 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN---HENVVFHQLDVTDPIATMSSLADFI   85 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT---CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEccCCCcHHHHHHHHHHH
Confidence            36788988877652   5666666776  99999999988777777666543   35799999999775 20        


Q ss_pred             --CCCchhhheecchh
Q 021344          234 --ASGFVDAVHAGAAL  247 (314)
Q Consensus       234 --~~~~fD~V~~~~vl  247 (314)
                        .-+..|+++.+..+
T Consensus        86 ~~~~g~iD~lv~nAg~  101 (311)
T 3o26_A           86 KTHFGKLDILVNNAGV  101 (311)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHhCCCCCEEEECCcc
Confidence              01368888876554

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=89.94  E-value=0.26  Score=43.56  Aligned_cols=96  Identities=11%  Similarity=0.073  Sum_probs=60.0

Q ss_pred             ccCCCC-eEEEEcC-c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cC--CC-CCCCC
Q 021344          163 KSAQGG-LLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV--CR-LPFAS  235 (314)
Q Consensus       163 ~~~~~~-~iLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~--~~-lp~~~  235 (314)
                      ...++. +||-+|+ | .|..+..+++.. +.++++++.+++.++.+++.    +   ...  .+.. +.  .. .....
T Consensus       146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l----G---a~~--v~~~~~~~~~~~~~~~~  215 (330)
T 1tt7_A          146 GLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQL----G---ASE--VISREDVYDGTLKALSK  215 (330)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHH----T---CSE--EEEHHHHCSSCCCSSCC
T ss_pred             CcCCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C---CcE--EEECCCchHHHHHHhhc
Confidence            344554 8999997 4 488777777653 23899999988777777652    1   111  1211 11  11 11223


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +.+|+|+-.-     ..  ..+....+.|++||++++...
T Consensus       216 ~~~d~vid~~-----g~--~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          216 QQWQGAVDPV-----GG--KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             CCEEEEEESC-----CT--HHHHHHHTTEEEEEEEEECCC
T ss_pred             CCccEEEECC-----cH--HHHHHHHHhhcCCCEEEEEec
Confidence            4688876532     23  368889999999999987653

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=89.92  E-value=0.16  Score=44.34  Aligned_cols=92  Identities=17%  Similarity=0.092  Sum_probs=59.2

Q ss_pred             cCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCCC--CCch
Q 021344          164 SAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA--SGFV  238 (314)
Q Consensus       164 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~~--~~~f  238 (314)
                      ..++.+||-+|+  |.|..+..+++.. +.+|+++|.++..++.+++.    +    .. ..+  |..+ ..+.  -+.+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~~~--~~~~~~~~~~~~~~~  190 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL----G----AE-EAA--TYAEVPERAKAWGGL  190 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT----T----CS-EEE--EGGGHHHHHHHTTSE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----C----CC-EEE--ECCcchhHHHHhcCc
Confidence            567899999998  3488777777764 34999999998887777651    1    11 112  2111 0000  0458


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      |+|+. ..     .  ..++...+.|++||+++....
T Consensus       191 d~vid-~g-----~--~~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          191 DLVLE-VR-----G--KEVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             EEEEE-CS-----C--TTHHHHHTTEEEEEEEEEC--
T ss_pred             eEEEE-CC-----H--HHHHHHHHhhccCCEEEEEeC
Confidence            88776 32     2  357888999999999887543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.87  E-value=2.9  Score=35.42  Aligned_cols=70  Identities=13%  Similarity=0.066  Sum_probs=48.4

Q ss_pred             CeEEEEcCcccHHHHHHH----HhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          168 GLLVDVSCGSGLFSRKFA----KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l~----~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      .+||-.|+  |..+..+.    +.+.  +|++++-++........          .+++++.+|+.++.  -..+|+|+.
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~----------~~~~~~~~D~~d~~--~~~~d~vi~   69 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW--RIIGTSRNPDQMEAIRA----------SGAEPLLWPGEEPS--LDGVTHLLI   69 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC--EEEEEESCGGGHHHHHH----------TTEEEEESSSSCCC--CTTCCEEEE
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC--EEEEEEcChhhhhhHhh----------CCCeEEEecccccc--cCCCCEEEE
Confidence            58999995  66555444    4455  99999998765544433          57899999998866  456898887


Q ss_pred             cchhccCCCH
Q 021344          244 GAALHCWPSP  253 (314)
Q Consensus       244 ~~vl~h~~d~  253 (314)
                      ........++
T Consensus        70 ~a~~~~~~~~   79 (286)
T 3ius_A           70 STAPDSGGDP   79 (286)
T ss_dssp             CCCCBTTBCH
T ss_pred             CCCccccccH
Confidence            6554443333

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=89.60  E-value=0.58  Score=41.34  Aligned_cols=96  Identities=15%  Similarity=0.152  Sum_probs=62.4

Q ss_pred             HhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----
Q 021344          161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----  233 (314)
                      .....++.+||-+|+  |.|..+..+++.. +.+|+++|.+++.++.+++.    +    .. ..+  |..+..+     
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~----g----~~-~~~--d~~~~~~~~~i~  207 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKL----G----CH-HTI--NYSTQDFAEVVR  207 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T----CS-EEE--ETTTSCHHHHHH
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C----CC-EEE--ECCCHHHHHHHH
Confidence            345567889999995  5587776666653 23999999999888777652    1    11 112  3322111     


Q ss_pred             ---CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          234 ---ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ---~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         ....+|+|+....     .  ..++...+.|++||+++....
T Consensus       208 ~~~~~~~~d~vi~~~g-----~--~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          208 EITGGKGVDVVYDSIG-----K--DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             HHHTTCCEEEEEECSC-----T--TTHHHHHHTEEEEEEEEECCC
T ss_pred             HHhCCCCCeEEEECCc-----H--HHHHHHHHhhccCCEEEEEec
Confidence               1235888775433     2  457888899999999987654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=89.54  E-value=0.29  Score=48.11  Aligned_cols=108  Identities=20%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhC-------C-----CCeEEEEeC---CHHHHHHHH-----------HHHHhcCCC---
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSG-------T-----YSGVVALDF---SENMLRQCY-----------DFIKQDNTI---  216 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~-------~-----~~~v~giD~---s~~~~~~a~-----------~~~~~~~~~---  216 (314)
                      +.-+|+|+|.|+|.....+.+..       +     ..+++.+|.   +.+.+..+-           +.+..-...   
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            44689999999999766654431       1     146899998   555554432           112111000   


Q ss_pred             --------CCCCeEEEEecCCC-CC-CC---CCchhhheecchhccCCCH----HHHHHHHHhhcccCcEEEEEe
Q 021344          217 --------LTSNLALVRADVCR-LP-FA---SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       217 --------~~~~v~~~~~d~~~-lp-~~---~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpGG~l~i~~  274 (314)
                              ....++++.+|+.+ ++ +.   ++.+|+++.... .--.||    ..++..+.++++|||.+...+
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f-~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGF-APAKNPDMWNEQLFNAMARMTRPGGTFSTFT  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSS-CC--CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCC-CCCCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence                    01256778888743 22 11   467999987542 111123    578999999999999875433

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=89.48  E-value=2.3  Score=36.78  Aligned_cols=103  Identities=11%  Similarity=0.137  Sum_probs=66.5

Q ss_pred             CCCeEEEEcCcc----cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-------
Q 021344          166 QGGLLVDVSCGS----GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~----G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-------  233 (314)
                      .++++|-.|.+.    |. ++..|++.|.  +|+.++.++...+.+.+..+..     .++.++.+|+.+...       
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEEL-----GAFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHH-----TCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHH
Confidence            467899999763    33 5677777776  8999999876555555544433     368889999976320       


Q ss_pred             ---CCCchhhheecchhcc----C-----CCH--------------HHHHHHHHhhcccCcEEEEEec
Q 021344          234 ---ASGFVDAVHAGAALHC----W-----PSP--------------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ---~~~~fD~V~~~~vl~h----~-----~d~--------------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         .-+..|+++.+..+..    .     .+.              ..+.+.+.+.++.+|.++....
T Consensus       103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence               1146888887654332    0     011              1356667777788888877654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=89.48  E-value=1.7  Score=37.60  Aligned_cols=105  Identities=19%  Similarity=0.218  Sum_probs=67.0

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS--ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s--~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-------  233 (314)
                      .++++|-.|++.|-   ++..|++.|.  +|+.+|.+  ....+...+.++..+    .++.++.+|+.+...       
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~  121 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG----RKAVLLPGDLSDESFARSLVHK  121 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT----CCEEECCCCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHH
Confidence            46789999977653   5666777776  89998876  344555555555443    678899999876320       


Q ss_pred             ---CCCchhhheecchhcc-CC-----CH--------------HHHHHHHHhhcccCcEEEEEecc
Q 021344          234 ---ASGFVDAVHAGAALHC-WP-----SP--------------SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 ---~~~~fD~V~~~~vl~h-~~-----d~--------------~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                         .-+..|+++.+..... ..     ++              ..+++.+.+.++++|.++.....
T Consensus       122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~  187 (294)
T 3r3s_A          122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI  187 (294)
T ss_dssp             HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred             HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence               0136788887655432 11     11              13566677788888888776543

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=89.43  E-value=2.4  Score=36.09  Aligned_cols=104  Identities=19%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCC-HHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC--------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s-~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~--------  233 (314)
                      .++++|-.|++.|-   ++..|++.|.  +|+.++.. ....+...+.++..+    .++.++.+|+.+...        
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~~~~~  103 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG----GRAVAIRADNRDAEAIEQAIRET  103 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHHH
Confidence            46789999987653   5667777776  88888654 455555555555543    678999999976320        


Q ss_pred             --CCCchhhheecchhccCC-----CH--------------HHHHHHHHhhcccCcEEEEEec
Q 021344          234 --ASGFVDAVHAGAALHCWP-----SP--------------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 --~~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                        .-+..|+++.+..+.+..     ++              ..+++.+.+.++++|.++....
T Consensus       104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          104 VEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence              013578888765443221     11              1356677778888888877653

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=89.38  E-value=0.2  Score=33.67  Aligned_cols=28  Identities=18%  Similarity=0.528  Sum_probs=21.6

Q ss_pred             CCeeeccCCCccchhcCCCCccccccccCceecCCCCc
Q 021344           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~   95 (314)
                      .-.+.|+.||..+.....          ...+|+.||+
T Consensus        26 ~v~Y~C~~CG~~~e~~~~----------d~irCp~CG~   53 (70)
T 1twf_L           26 TLKYICAECSSKLSLSRT----------DAVRCKDCGH   53 (70)
T ss_dssp             CCCEECSSSCCEECCCTT----------STTCCSSSCC
T ss_pred             eEEEECCCCCCcceeCCC----------CCccCCCCCc
Confidence            456899999998655432          4679999998

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=89.21  E-value=0.19  Score=45.58  Aligned_cols=102  Identities=18%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      ++.+|+-+|+|. |......++.. +.+|+++|.++..++.+++.+.       ..+.....+...+.-.-..+|+|+..
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g-------~~~~~~~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFC-------GRIHTRYSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTT-------TSSEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcC-------CeeEeccCCHHHHHHHHcCCCEEEEC
Confidence            578999999976 65555444443 2399999999988777665321       12211111111110001247887763


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      -.......+.-+.++..+.+||||+++....
T Consensus       239 ~~~p~~~t~~li~~~~l~~mk~g~~iV~va~  269 (377)
T 2vhw_A          239 VLVPGAKAPKLVSNSLVAHMKPGAVLVDIAI  269 (377)
T ss_dssp             CCCTTSCCCCCBCHHHHTTSCTTCEEEEGGG
T ss_pred             CCcCCCCCcceecHHHHhcCCCCcEEEEEec
Confidence            2111111111224566778999999876653

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=89.11  E-value=1.6  Score=37.14  Aligned_cols=78  Identities=19%  Similarity=0.244  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      .++.+|--|.+.|-   .+..|++.|.  +|+..|.+++.++...+.+...+    .++..+.+|+.+..          
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~   81 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKG----YDAHGVAFDVTDELAIEAAFSKLD   81 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT----CCEEECCCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHHHHH
Confidence            47788888887763   5677777776  99999999998888877777755    67889999987632          


Q ss_pred             CCCCchhhheecchhcc
Q 021344          233 FASGFVDAVHAGAALHC  249 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h  249 (314)
                      -.-++.|+++.+..+.+
T Consensus        82 ~~~G~iDiLVNNAG~~~   98 (255)
T 4g81_D           82 AEGIHVDILINNAGIQY   98 (255)
T ss_dssp             HTTCCCCEEEECCCCCC
T ss_pred             HHCCCCcEEEECCCCCC
Confidence            11246888887655443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=89.06  E-value=0.96  Score=42.51  Aligned_cols=91  Identities=12%  Similarity=0.019  Sum_probs=56.4

Q ss_pred             cCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       164 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ...+++|+-+|+|. |......++.. +.+|+++|.++...+.+++          ..+..  .++.+.   -...|+|+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~----------~Ga~~--~~l~e~---l~~aDvVi  334 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMM----------EGFDV--VTVEEA---IGDADIVV  334 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----------TTCEE--CCHHHH---GGGCSEEE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----------cCCEE--ecHHHH---HhCCCEEE
Confidence            34688999999987 66555555443 2499999999987776654          22332  122111   13578887


Q ss_pred             ecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ..-.-.++-+     .+..+.+|+||+++....
T Consensus       335 ~atgt~~~i~-----~~~l~~mk~ggilvnvG~  362 (494)
T 3ce6_A          335 TATGNKDIIM-----LEHIKAMKDHAILGNIGH  362 (494)
T ss_dssp             ECSSSSCSBC-----HHHHHHSCTTCEEEECSS
T ss_pred             ECCCCHHHHH-----HHHHHhcCCCcEEEEeCC
Confidence            6432222211     256677899999977663

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=89.01  E-value=2.6  Score=35.89  Aligned_cols=77  Identities=18%  Similarity=0.311  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeC-------------CHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDF-------------SENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~-------------s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  229 (314)
                      .++++|-.|++.|-   .+..|++.|.  +|+.+|.             +...++...+.+...+    .++.++.+|+.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~   83 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN----RRIVAAVVDTR   83 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEECCTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC----CeEEEEECCCC
Confidence            46789999987753   5667777776  9999998             6766666666555543    67899999997


Q ss_pred             CCC-----CC-----CCchhhheecchhc
Q 021344          230 RLP-----FA-----SGFVDAVHAGAALH  248 (314)
Q Consensus       230 ~lp-----~~-----~~~fD~V~~~~vl~  248 (314)
                      +..     +.     -+..|+++.+..+.
T Consensus        84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~  112 (277)
T 3tsc_A           84 DFDRLRKVVDDGVAALGRLDIIVANAGVA  112 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            642     10     13578888765543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=88.92  E-value=0.77  Score=38.79  Aligned_cols=103  Identities=12%  Similarity=0.109  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCccc---HHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C--
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A--  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~--  234 (314)
                      .+++||-.|++.|   .++..|++ .+.  +|++++.++...+...+.+...+    .++.++.+|+.+...     .  
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~   76 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDLQSIRALRDFL   76 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC----CeeEEEECCCCCHHHHHHHHHHH
Confidence            3567887775543   13445555 555  89999999877766666655433    578899999876320     0  


Q ss_pred             ---CCchhhheecchhccCC----C-H--------------HHHHHHHHhhcccCcEEEEEe
Q 021344          235 ---SGFVDAVHAGAALHCWP----S-P--------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~----d-~--------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                         -+.+|+|+.........    . .              ..+++.+.+.++++|.++...
T Consensus        77 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           77 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence               12578887654332110    1 1              134556666777778877655

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=88.88  E-value=0.11  Score=35.98  Aligned_cols=29  Identities=24%  Similarity=0.753  Sum_probs=21.3

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      -+.||.|++.-....         ..+.+.|..|+..+
T Consensus        35 ky~CpfCGk~~vkR~---------a~GIW~C~kCg~~~   63 (83)
T 3j21_i           35 KHTCPVCGRKAVKRI---------STGIWQCQKCGATF   63 (83)
T ss_dssp             CBCCSSSCSSCEEEE---------ETTEEEETTTCCEE
T ss_pred             ccCCCCCCCceeEec---------CcCeEEcCCCCCEE
Confidence            567999999743321         12789999998876

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.83  E-value=1.4  Score=37.35  Aligned_cols=106  Identities=14%  Similarity=0.224  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCc----ccH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC------
Q 021344          166 QGGLLVDVSCG----SGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA------  234 (314)
Q Consensus       166 ~~~~iLDiGcG----~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~------  234 (314)
                      .++++|-.|++    -|. ++..|++.|.  +|+.++.++...+.+.+..+..+   ..++.++.+|+.+...-      
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~   80 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLD---RNDSIILPCDVTNDAEIETCFAS   80 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSS---SCCCEEEECCCSSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcC---CCCceEEeCCCCCHHHHHHHHHH
Confidence            46789999976    333 6677777776  89999988766566655555433   23789999999764310      


Q ss_pred             ----CCchhhheecchhcc----C-----CCHH--------------HHHHHHHhhcccCcEEEEEecc
Q 021344          235 ----SGFVDAVHAGAALHC----W-----PSPS--------------NAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       235 ----~~~fD~V~~~~vl~h----~-----~d~~--------------~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                          -+.+|+++.+..+.+    .     .+.+              .+++.+...++++|.++.....
T Consensus        81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  149 (266)
T 3oig_A           81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL  149 (266)
T ss_dssp             HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence                135787776544322    0     1111              2456677778888888776543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=88.67  E-value=2.3  Score=37.37  Aligned_cols=92  Identities=14%  Similarity=0.195  Sum_probs=58.4

Q ss_pred             CCeEEEEcCcc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          167 GGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       167 ~~~iLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      ..+|.=||+|.  |.++..+.+.|...+|+++|.++..++.+++.    +     .+.-...|..++  .-...|+|+..
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G-----~~~~~~~~~~~~--~~~~aDvVila  101 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G-----IIDEGTTSIAKV--EDFSPDFVMLS  101 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T-----SCSEEESCTTGG--GGGCCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----C-----CcchhcCCHHHH--hhccCCEEEEe
Confidence            36899999997  45677777776545899999999888776641    1     111122333220  12347888764


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEE
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i  272 (314)
                      --..   ....+++++...|++|.+++-
T Consensus       102 vp~~---~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          102 SPVR---TFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             SCGG---GHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCHH---HHHHHHHHHhhccCCCcEEEE
Confidence            3222   235678889899999876643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.46  E-value=0.22  Score=44.94  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ++.+||-+|+|. |.....+++. |.  +|+++|.++..++.+++....       .+..+..+...+.-.-..+|+|+.
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga--~V~v~dr~~~r~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~DvVI~  236 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS-------RVELLYSNSAEIETAVAEADLLIG  236 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhhCc-------eeEeeeCCHHHHHHHHcCCCEEEE
Confidence            357999999976 6555555444 44  999999999888877765422       222221111111000124788875


Q ss_pred             cchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .-.......+.-+.++..+.+++||+++...+.
T Consensus       237 ~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          237 AVLVPGRRAPILVPASLVEQMRTGSVIVDVAVD  269 (361)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred             CCCcCCCCCCeecCHHHHhhCCCCCEEEEEecC
Confidence            433222111111234566789999988876543

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=88.23  E-value=0.46  Score=42.37  Aligned_cols=97  Identities=14%  Similarity=0.059  Sum_probs=55.4

Q ss_pred             HHhccCCCCeEEEEcC-c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344          160 EYFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----  232 (314)
                      +.....++.+||-+|+ | .|.++..+++.....+|++++ ++...+.++     .+   ..  .++. +-.++.     
T Consensus       136 ~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~g---a~--~~~~-~~~~~~~~~~~  203 (349)
T 4a27_A          136 EVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DS---VT--HLFD-RNADYVQEVKR  203 (349)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GG---SS--EEEE-TTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cC---Cc--EEEc-CCccHHHHHHH
Confidence            3455678899999998 3 388888888764345899998 554444443     11   11  2222 111110     


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ...+.+|+|+-.-.     .+  .+....+.|++||++++...
T Consensus       204 ~~~~g~Dvv~d~~g-----~~--~~~~~~~~l~~~G~~v~~G~  239 (349)
T 4a27_A          204 ISAEGVDIVLDCLC-----GD--NTGKGLSLLKPLGTYILYGS  239 (349)
T ss_dssp             HCTTCEEEEEEECC--------------CTTEEEEEEEEEEC-
T ss_pred             hcCCCceEEEECCC-----ch--hHHHHHHHhhcCCEEEEECC
Confidence            12346888875322     21  24678899999999998764

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=88.17  E-value=2  Score=38.45  Aligned_cols=93  Identities=8%  Similarity=0.002  Sum_probs=58.3

Q ss_pred             CCCCeEEEEcC-c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CCCCc
Q 021344          165 AQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGF  237 (314)
Q Consensus       165 ~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~~~~  237 (314)
                      .++.+||-+|+ | .|.++..+++.. ..+|+++. ++..++.+++.    +    . -.++...-.++.     ..++.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~l----G----a-~~vi~~~~~~~~~~v~~~t~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSR----G----A-EEVFDYRAPNLAQTIRTYTKNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT----T----C-SEEEETTSTTHHHHHHHHTTTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHc----C----C-cEEEECCCchHHHHHHHHccCC
Confidence            67889999998 3 588888888874 34888885 78777777652    1    1 122222111110     12344


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhc-ccCcEEEEEe
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTT  274 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~L-kpGG~l~i~~  274 (314)
                      +|+|+-.     +..+ ..+....+.| ++||+++...
T Consensus       232 ~d~v~d~-----~g~~-~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDC-----ITNV-ESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEES-----SCSH-HHHHHHHHHSCTTCEEEEESS
T ss_pred             ccEEEEC-----CCch-HHHHHHHHHhhcCCCEEEEEe
Confidence            7777743     2232 4577788888 6999998755

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.16  E-value=0.29  Score=44.21  Aligned_cols=101  Identities=17%  Similarity=0.223  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ++.+|+-+|+|. |..+...+. .|.  +|+++|.++..++.+.+..   +    ..+.....+...+.-.-..+|+|+.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~~---g----~~~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDVF---G----GRVITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT---T----TSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHhc---C----ceEEEecCCHHHHHHHHhCCCEEEE
Confidence            468999999975 554444443 354  9999999998777665422   1    2222111111111000124677765


Q ss_pred             cchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       244 ~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .-.......+.-+.++..+.+|+||+++....
T Consensus       236 ~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          236 AVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             CCC-------CCSCHHHHTTSCTTCEEEECC-
T ss_pred             CCCCCccccchhHHHHHHHhhcCCCEEEEEec
Confidence            43322101111125667788999998876553

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=88.06  E-value=0.14  Score=37.71  Aligned_cols=30  Identities=23%  Similarity=0.627  Sum_probs=21.5

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .-+.||.|+..-.....         .+.+.|..|+..|
T Consensus        59 akytCPfCGk~~vKR~a---------vGIW~C~~Cgk~f   88 (116)
T 3cc2_Z           59 EDHACPNCGEDRVDRQG---------TGIWQCSYCDYKF   88 (116)
T ss_dssp             SCEECSSSCCEEEEEEE---------TTEEEETTTCCEE
T ss_pred             cCCcCCCCCCceeEecC---------ceeEECCCCCCEE
Confidence            47889999984322111         2789999998876

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=87.90  E-value=0.83  Score=38.72  Aligned_cols=104  Identities=14%  Similarity=0.112  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEE-eCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C--
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVAL-DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A--  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~gi-D~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~--  234 (314)
                      .++++|-.|++.|-   ++..|++.|.  +|+.+ +.+....+...+.++..+    .++.++.+|+.+...     .  
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~   80 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLG----RSALAIKADLTNAAEVEAAISAA   80 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTT----SCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHH
Confidence            46789999987753   5666777776  88887 666666666666555543    678899999976421     0  


Q ss_pred             ---CCchhhheecchhc-c---CC--CH--------------HHHHHHHHhhcccCcEEEEEec
Q 021344          235 ---SGFVDAVHAGAALH-C---WP--SP--------------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 ---~~~fD~V~~~~vl~-h---~~--d~--------------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         -+..|+++.+.... .   +.  ++              ..+.+.+.+.++++|.++....
T Consensus        81 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  144 (259)
T 3edm_A           81 ADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS  144 (259)
T ss_dssp             HHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence               13578887655322 1   11  11              1345666677777887776553

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=87.83  E-value=0.21  Score=35.50  Aligned_cols=26  Identities=27%  Similarity=0.713  Sum_probs=19.6

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ..||.|++++...+           +.+.|..|+..|
T Consensus        33 ~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f   58 (101)
T 2jne_A           33 LHCPQCQHVLDQDN-----------GHARCRSCGEFI   58 (101)
T ss_dssp             CBCSSSCSBEEEET-----------TEEEETTTCCEE
T ss_pred             ccCccCCCcceecC-----------CEEECccccchh
Confidence            78999999987644           456677777665

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=87.82  E-value=0.25  Score=33.29  Aligned_cols=31  Identities=32%  Similarity=0.695  Sum_probs=23.2

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccccCcc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (314)
                      .+.|| |+.........         ....|+ ||......+
T Consensus         4 vv~C~-C~~~~~~~~~~---------kT~~C~-CG~~~~~~k   34 (71)
T 1gh9_A            4 IFRCD-CGRALYSREGA---------KTRKCV-CGRTVNVKD   34 (71)
T ss_dssp             EEEET-TSCCEEEETTC---------SEEEET-TTEEEECCS
T ss_pred             EEECC-CCCEEEEcCCC---------cEEECC-CCCeeeece
Confidence            57899 99987665533         578999 998875554

>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=87.70  E-value=0.28  Score=30.70  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=19.8

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      +..+||.|++.+..             +.+.|..||+.
T Consensus        13 ~k~iCpkC~a~~~~-------------gaw~CrKCG~~   37 (51)
T 3j21_g           13 KKYVCLRCGATNPW-------------GAKKCRKCGYK   37 (51)
T ss_dssp             SEEECTTTCCEECT-------------TCSSCSSSSSC
T ss_pred             CCccCCCCCCcCCC-------------CceecCCCCCc
Confidence            56789999998432             78999999765

>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y

Probab=87.58  E-value=0.15  Score=36.69  Aligned_cols=30  Identities=23%  Similarity=0.710  Sum_probs=21.7

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .-+.||.|+..-....         ..+.+.|..|+..+
T Consensus        35 aky~CpfCgk~~vKR~---------a~GIW~C~kCg~~~   64 (103)
T 4a17_Y           35 AKYGCPFCGKVAVKRA---------AVGIWKCKPCKKII   64 (103)
T ss_dssp             SCEECTTTCCEEEEEE---------ETTEEEETTTTEEE
T ss_pred             cCCCCCCCCCceeeec---------CcceEEcCCCCCEE
Confidence            3578999998643322         12789999998776

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=87.38  E-value=0.29  Score=42.77  Aligned_cols=57  Identities=21%  Similarity=0.165  Sum_probs=37.8

Q ss_pred             CCeEEEEecCCC-CC-CCCCchhhheecchhcc--------------------CCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          219 SNLALVRADVCR-LP-FASGFVDAVHAGAALHC--------------------WPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       219 ~~v~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h--------------------~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .++.++++|..+ ++ +++++||+|+++=-...                    +.....+++++.++|||||.+++...
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            457888888765 22 45678999988522111                    01123567899999999999988753

>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A

Probab=87.26  E-value=0.37  Score=38.82  Aligned_cols=40  Identities=20%  Similarity=0.384  Sum_probs=27.1

Q ss_pred             CCeeeccCCCccchhc-CCCCccccccccCceecCCCCccc
Q 021344           58 GDLFSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~-~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      +..+.||.|+...... ..+....++.+.-.+.|..||+.|
T Consensus       135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w  175 (178)
T 3po3_S          135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW  175 (178)
T ss_dssp             BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred             cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence            5678999999864221 112223455666789999999987

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=87.06  E-value=1.2  Score=37.70  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C--
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A--  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~-s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~--  234 (314)
                      .+++||-.|++.|   .++..|++.|.  +|++++- ++...+...+.++..+    .++.++.+|+.+...     .  
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~   93 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEVVALFDKA   93 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHHHHHH
Confidence            3568888886543   24555666665  8999998 7776666555555433    578899999876321     0  


Q ss_pred             ---CCchhhheecchh
Q 021344          235 ---SGFVDAVHAGAAL  247 (314)
Q Consensus       235 ---~~~fD~V~~~~vl  247 (314)
                         -+.+|+|+.....
T Consensus        94 ~~~~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           94 VSHFGGLDFVMSNSGM  109 (274)
T ss_dssp             HHHHSCEEEEECCCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence               1257877765443

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=87.05  E-value=3.3  Score=35.16  Aligned_cols=75  Identities=24%  Similarity=0.335  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      +++.+|--|.+.|-   .+..|++.|.  +|+.+|.+++.++...+.++..+    .++.++.+|+.+..-         
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g----~~~~~~~~Dvt~~~~v~~~~~~~~   79 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMG----KEVLGVKADVSKKKDVEEFVRRTF   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            47889999988764   5667777776  99999999999888888887765    689999999976320         


Q ss_pred             -CCCchhhheecch
Q 021344          234 -ASGFVDAVHAGAA  246 (314)
Q Consensus       234 -~~~~fD~V~~~~v  246 (314)
                       .-++.|+++.+..
T Consensus        80 ~~~G~iDiLVNNAG   93 (254)
T 4fn4_A           80 ETYSRIDVLCNNAG   93 (254)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCc
Confidence             1246788876554

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=87.00  E-value=0.22  Score=45.63  Aligned_cols=42  Identities=19%  Similarity=0.090  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (314)
                      ++.+|+-+|+|. |.....+++.. +.+|+++|.++..++.+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence            578999999997 66665555543 3499999999988777765

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=86.99  E-value=2.9  Score=35.32  Aligned_cols=105  Identities=15%  Similarity=0.222  Sum_probs=62.8

Q ss_pred             CCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC----
Q 021344          167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----  234 (314)
Q Consensus       167 ~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~----  234 (314)
                      ++++|-.|++.|   .++..|++.|.  +|++++.++...+...+.+....  ...++.++.+|+.+..     +.    
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQQQLRDTFRKVVD   82 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhc--CCCceEEEecCCCCHHHHHHHHHHHHH
Confidence            568899997654   25566666676  99999999876665555443321  0246889999987632     00    


Q ss_pred             -CCchhhheecchhccCCCHHH-----------HHHHHHhhccc-----CcEEEEEec
Q 021344          235 -SGFVDAVHAGAALHCWPSPSN-----------AVAEISRILRS-----GGVFVGTTF  275 (314)
Q Consensus       235 -~~~fD~V~~~~vl~h~~d~~~-----------~l~~i~r~Lkp-----GG~l~i~~~  275 (314)
                       -+..|+++.+.......+...           ..+.+.+.++.     +|.++....
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS  140 (267)
T 2gdz_A           83 HFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  140 (267)
T ss_dssp             HHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence             134688887655443334432           23444555543     577766543

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=86.99  E-value=0.84  Score=40.24  Aligned_cols=66  Identities=17%  Similarity=0.298  Sum_probs=50.4

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-CCchhhheec
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG  244 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~  244 (314)
                      +|||+=||.|.+..-+.+.|. .-+.++|+++.+.+..+.+.         .-.++.+|+.++... -..+|+++..
T Consensus         2 kvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~---------~~~~~~~DI~~i~~~~~~~~D~l~gg   68 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGG   68 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHC---------CSEEEESCGGGCCGGGSCCCSEEECC
T ss_pred             eEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC---------CCCcccCChhhCCHhhCCcccEEEec
Confidence            699999999999999998885 35679999998888777652         236788998776421 1358888864

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=86.95  E-value=2.7  Score=36.31  Aligned_cols=79  Identities=22%  Similarity=0.232  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC---
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~---  234 (314)
                      .++++|-.|++.|   .++..|++.|.  +|+.++.++..++...+.+...+. ...++.++.+|+.+..     +.   
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~  101 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGV-PAEKINAVVADVTEASGQDDIINTTL  101 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEEecCCCCHHHHHHHHHHHH
Confidence            4677888887655   25566666676  999999998877766655544320 0117889999987632     00   


Q ss_pred             --CCchhhheecchh
Q 021344          235 --SGFVDAVHAGAAL  247 (314)
Q Consensus       235 --~~~fD~V~~~~vl  247 (314)
                        -+.+|+++.+..+
T Consensus       102 ~~~g~iD~lvnnAG~  116 (297)
T 1xhl_A          102 AKFGKIDILVNNAGA  116 (297)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence              1357888876543

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=86.94  E-value=0.3  Score=31.18  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=23.4

Q ss_pred             cCCCCeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .+......||.||+.+....         ..+.+.|..|+..+
T Consensus        13 ki~~~~~fCPkCG~~~~ma~---------~~dr~~C~kCgyt~   46 (55)
T 2k4x_A           13 KLVRKHRFCPRCGPGVFLAE---------HADRYSCGRCGYTE   46 (55)
T ss_dssp             CCCCSSCCCTTTTTTCCCEE---------CSSEEECTTTCCCE
T ss_pred             EEEEccccCcCCCCceeEec---------cCCEEECCCCCCEE
Confidence            45556788999999653221         12589999997664

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=86.88  E-value=4.8  Score=29.79  Aligned_cols=91  Identities=10%  Similarity=0.184  Sum_probs=53.3

Q ss_pred             CCeEEEEcCcc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCCCchhh
Q 021344          167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (314)
Q Consensus       167 ~~~iLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~~~~~fD~  240 (314)
                      +.+|+-+|+|. |. ++..|.+.+.  +|+++|.++..++..++.         .++.++.+|..+..    ..-..+|+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~--~v~~~d~~~~~~~~~~~~---------~~~~~~~~d~~~~~~l~~~~~~~~d~   72 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADM   72 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHh---------cCcEEEEcCCCCHHHHHHcCcccCCE
Confidence            35789999876 43 3445555554  899999998876655431         24566777765421    11235787


Q ss_pred             heecchhccCCCH--HHHHHHHHhhcccCcEEEEEe
Q 021344          241 VHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       241 V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+..-     ++.  ...+..+.+.++++ .+++..
T Consensus        73 vi~~~-----~~~~~~~~~~~~~~~~~~~-~ii~~~  102 (140)
T 1lss_A           73 YIAVT-----GKEEVNLMSSLLAKSYGIN-KTIARI  102 (140)
T ss_dssp             EEECC-----SCHHHHHHHHHHHHHTTCC-CEEEEC
T ss_pred             EEEee-----CCchHHHHHHHHHHHcCCC-EEEEEe
Confidence            77642     232  23455566667775 444433

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=86.87  E-value=1.7  Score=38.71  Aligned_cols=98  Identities=10%  Similarity=0.070  Sum_probs=53.6

Q ss_pred             HHhccCCCCeEEEEcC-c-ccHHHHHHHHhCCCCeEEE-EeCCHH---HHHHHHHHHHhcCCCCCCCeEEEEec---CCC
Q 021344          160 EYFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVA-LDFSEN---MLRQCYDFIKQDNTILTSNLALVRAD---VCR  230 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~v~g-iD~s~~---~~~~a~~~~~~~~~~~~~~v~~~~~d---~~~  230 (314)
                      ......++.+||-+|+ | .|.++..+++.. +.++++ ++.++.   ..+.+++    .+   ..  .++..+   ...
T Consensus       161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~----lG---a~--~vi~~~~~~~~~  230 (357)
T 1zsy_A          161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDIQKLSDRLKS----LG---AE--HVITEEELRRPE  230 (357)
T ss_dssp             HSSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCHHHHHHHHHH----TT---CS--EEEEHHHHHSGG
T ss_pred             HHhccCCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccchHHHHHHHHh----cC---Cc--EEEecCcchHHH
Confidence            3345667899999997 3 488888888763 225554 444332   3444443    22   11  122211   111


Q ss_pred             C-CCCC--CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          231 L-PFAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 l-p~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      + ....  +.+|+|+-.     +..+ . ..+..+.|++||++++..
T Consensus       231 ~~~~~~~~~~~Dvvid~-----~g~~-~-~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          231 MKNFFKDMPQPRLALNC-----VGGK-S-STELLRQLARGGTMVTYG  270 (357)
T ss_dssp             GGGTTSSSCCCSEEEES-----SCHH-H-HHHHHTTSCTTCEEEECC
T ss_pred             HHHHHhCCCCceEEEEC-----CCcH-H-HHHHHHhhCCCCEEEEEe
Confidence            1 1111  147877643     2222 2 345789999999998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=86.84  E-value=0.12  Score=46.93  Aligned_cols=41  Identities=20%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHH
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAK-SGTYSGVVALDFSENMLRQCYD  208 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~  208 (314)
                      ++.+|+-+|+|. |..+..+++ .|.  +|+++|.++..++.+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence            578999999997 665554444 454  99999999987777765

>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*

Probab=86.51  E-value=0.18  Score=34.13  Aligned_cols=30  Identities=23%  Similarity=0.704  Sum_probs=21.1

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .-+.||.|+..-.....         .+++.|..|+..+
T Consensus        26 ~ky~C~fCgk~~vkR~a---------~GIW~C~~C~~~~   55 (73)
T 1ffk_W           26 KKYKCPVCGFPKLKRAS---------TSIWVCGHCGYKI   55 (73)
T ss_pred             cCccCCCCCCceeEEEE---------eEEEECCCCCcEE
Confidence            45779999985332221         2789999998876

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=86.12  E-value=0.31  Score=44.31  Aligned_cols=42  Identities=21%  Similarity=0.088  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (314)
                      ++.+|+-+|+|. |.....+++.. +.+|+++|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence            688999999997 66666666553 2389999999876666654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=85.97  E-value=1.8  Score=37.42  Aligned_cols=103  Identities=16%  Similarity=0.155  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCc----ccH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C-
Q 021344          166 QGGLLVDVSCG----SGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A-  234 (314)
Q Consensus       166 ~~~~iLDiGcG----~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~-  234 (314)
                      .++++|-.|++    -|. ++..|++.|.  +|+.+|.++...+...+..+..     ..+.++.+|+.+...     . 
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~  101 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESL-----GVKLTVPCDVSDAESVDNMFKV  101 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHH-----TCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHH
Confidence            46789999975    343 5677777776  8999999876555555544433     346789999876420     0 


Q ss_pred             ----CCchhhheecchhccC---------CCH--------------HHHHHHHHhhcccCcEEEEEec
Q 021344          235 ----SGFVDAVHAGAALHCW---------PSP--------------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 ----~~~fD~V~~~~vl~h~---------~d~--------------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                          -+..|+++.+..+...         .+.              ..+.+.+.+.++.+|.++....
T Consensus       102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence                1367888876543321         111              1345666677778888877654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=85.85  E-value=2.3  Score=36.63  Aligned_cols=101  Identities=19%  Similarity=0.193  Sum_probs=67.6

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      +++.+|--|.+.|-   .+..|++.|.  +|+.+|.+++.++.+.+.+   +    .++..+.+|+.+..-         
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~---g----~~~~~~~~Dv~~~~~v~~~~~~~~   98 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEI---G----GGAVGIQADSANLAELDRLYEKVK   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---C----TTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHc---C----CCeEEEEecCCCHHHHHHHHHHHH
Confidence            57789999988763   5677777777  9999999998877665543   2    567788899876320         


Q ss_pred             -CCCchhhheecchhccCCC-----H--------------HHHHHHHHhhcccCcEEEEEec
Q 021344          234 -ASGFVDAVHAGAALHCWPS-----P--------------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d-----~--------------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       .-++.|+++.+........     +              -...+.+.+.|+.+|.++....
T Consensus        99 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS  160 (273)
T 4fgs_A           99 AEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS  160 (273)
T ss_dssp             HHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred             HHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence             1245787776554332211     1              1346677788888888776543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=85.76  E-value=5.8  Score=33.60  Aligned_cols=78  Identities=18%  Similarity=0.155  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C---
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A---  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~---  234 (314)
                      .++++|-.|++.|   .++..|++.|.  +|++++.++..++...+.+...+  ...++.++.+|+.+...     .   
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~  106 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILSMFSAIR  106 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcC--CCceEEEEEecCCCHHHHHHHHHHHH
Confidence            4678998887654   24555666665  89999999887776666555443  12468888999876421     0   


Q ss_pred             --CCchhhheecchh
Q 021344          235 --SGFVDAVHAGAAL  247 (314)
Q Consensus       235 --~~~fD~V~~~~vl  247 (314)
                        -+.+|+|+....+
T Consensus       107 ~~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          107 SQHSGVDICINNAGL  121 (279)
T ss_dssp             HHHCCCSEEEECCCC
T ss_pred             HhCCCCCEEEECCCC
Confidence              1357888875543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=85.46  E-value=2.3  Score=36.11  Aligned_cols=104  Identities=19%  Similarity=0.207  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEE-eCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC--------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVAL-DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~gi-D~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~--------  233 (314)
                      .++++|-.|++.|-   .+..|++.|.  +|+.+ +-++...+...+.+...+    .++.++.+|+.+...        
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~~~~~~   99 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG----GKALTAQADVSDPAAVRRLFATA   99 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHHHHHH
Confidence            36789999987763   5677777776  88776 445555555555555543    678899999976421        


Q ss_pred             --CCCchhhheecchhccCCC-----H--------------HHHHHHHHhhcccCcEEEEEec
Q 021344          234 --ASGFVDAVHAGAALHCWPS-----P--------------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 --~~~~fD~V~~~~vl~h~~d-----~--------------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                        .-+..|+++.+..+.....     .              ..+++.+.+.++++|.++....
T Consensus       100 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  162 (267)
T 3u5t_A          100 EEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST  162 (267)
T ss_dssp             HHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence              0136788877654432211     1              1346677777888888877653

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=85.30  E-value=0.78  Score=33.96  Aligned_cols=42  Identities=12%  Similarity=0.217  Sum_probs=27.0

Q ss_pred             CCCeeeccCCCccchh-cCCCCccccccccCceecCCCCcccc
Q 021344           57 EGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS   98 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (314)
                      ......||.|+..... ...+....++.+.-.+.|.+||+.|.
T Consensus        69 p~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~  111 (113)
T 3h0g_I           69 PRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE  111 (113)
T ss_dssp             CBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred             CCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence            3344889999986321 11122244556667899999998873

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=85.24  E-value=2.9  Score=37.64  Aligned_cols=101  Identities=8%  Similarity=0.022  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      .+++||.|+-+.|.++..++...    ++.+.-|--..+..+.++...++ ...++.+... ...+   .+.||+|+...
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~~----~~~~~ds~~~~~~~~~n~~~~~~-~~~~~~~~~~-~~~~---~~~~~~v~~~l  108 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEHK----PYSIGDSYISELATRENLRLNGI-DESSVKFLDS-TADY---PQQPGVVLIKV  108 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGGC----CEEEESCHHHHHHHHHHHHHTTC-CGGGSEEEET-TSCC---CSSCSEEEEEC
T ss_pred             CCCCEEEECCCCCHHHHhhccCC----ceEEEhHHHHHHHHHHHHHHcCC-CccceEeccc-cccc---ccCCCEEEEEc
Confidence            45689999999999998887653    34454366566666677777653 1123555432 2222   35699888643


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      . .+.......|..+...|++|+.+++..-.
T Consensus       109 p-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~  138 (375)
T 4dcm_A          109 P-KTLALLEQQLRALRKVVTSDTRIIAGAKA  138 (375)
T ss_dssp             C-SCHHHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred             C-CCHHHHHHHHHHHHhhCCCCCEEEEEecc
Confidence            2 11222345688899999999999877643

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=85.12  E-value=2.9  Score=35.51  Aligned_cols=78  Identities=21%  Similarity=0.291  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCC------------HHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s------------~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .++++|-.|++.|   .++..|++.|.  +|+.+|.+            ...++...+.+...+    .++.++.+|+.+
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~   85 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG----SRIVARQADVRD   85 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT----CCEEEEECCTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcC----CeEEEEeCCCCC
Confidence            4678999998765   25667777776  89999986            666666666555544    689999999976


Q ss_pred             CC-----CC-----CCchhhheecchhcc
Q 021344          231 LP-----FA-----SGFVDAVHAGAALHC  249 (314)
Q Consensus       231 lp-----~~-----~~~fD~V~~~~vl~h  249 (314)
                      ..     +.     -+..|+++.+..+..
T Consensus        86 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~  114 (278)
T 3sx2_A           86 RESLSAALQAGLDELGRLDIVVANAGIAP  114 (278)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            42     10     136788887655443

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=84.97  E-value=0.45  Score=42.10  Aligned_cols=57  Identities=18%  Similarity=0.121  Sum_probs=39.2

Q ss_pred             CCeEEEEecCCC-CC-CCCCchhhheecchhc--------------cCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          219 SNLALVRADVCR-LP-FASGFVDAVHAGAALH--------------CWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       219 ~~v~~~~~d~~~-lp-~~~~~fD~V~~~~vl~--------------h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ....++++|..+ +. +++++||+|++.=-..              ++......++++.++|||||.+++..-
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~   85 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   85 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence            467788888753 32 4567899988752211              111245788999999999999998763

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=84.81  E-value=0.27  Score=45.00  Aligned_cols=42  Identities=21%  Similarity=0.112  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (314)
                      ++.+|+-+|+|. |..+..+++.. +.+|+++|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~~~  213 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS  213 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence            578999999997 66666665543 2489999999887776644

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=84.76  E-value=1.2  Score=39.52  Aligned_cols=89  Identities=7%  Similarity=-0.046  Sum_probs=54.2

Q ss_pred             CeEEEE-cCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC--------CCc
Q 021344          168 GLLVDV-SCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--------SGF  237 (314)
Q Consensus       168 ~~iLDi-GcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~--------~~~  237 (314)
                      .+||-. |+|. |..+..+++.. ..+|+++|.++..++.+++.    +    .. ..+  |..+..+.        ...
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~~----G----a~-~~~--~~~~~~~~~~v~~~~~~~g  233 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLKDI----G----AA-HVL--NEKAPDFEATLREVMKAEQ  233 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHHHH----T----CS-EEE--ETTSTTHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C----CC-EEE--ECCcHHHHHHHHHHhcCCC
Confidence            466654 4443 77777776653 23999999999888888752    1    11 122  22221111        125


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +|+|+-.-.       ...+....+.|++||++++...
T Consensus       234 ~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          234 PRIFLDAVT-------GPLASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             CCEEEESSC-------HHHHHHHHHHSCTTCEEEECCC
T ss_pred             CcEEEECCC-------ChhHHHHHhhhcCCCEEEEEec
Confidence            887775432       1234778899999999998763

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=84.61  E-value=0.39  Score=33.11  Aligned_cols=12  Identities=42%  Similarity=1.129  Sum_probs=8.5

Q ss_pred             eeccCCCccchh
Q 021344           61 FSCPICYEPLIR   72 (314)
Q Consensus        61 l~CP~C~~~l~~   72 (314)
                      ..||.|++++..
T Consensus         3 ~~CP~C~~~l~~   14 (81)
T 2jrp_A            3 ITCPVCHHALER   14 (81)
T ss_dssp             CCCSSSCSCCEE
T ss_pred             CCCCCCCCcccc
Confidence            468888887755

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=84.15  E-value=0.94  Score=42.47  Aligned_cols=72  Identities=18%  Similarity=0.220  Sum_probs=50.7

Q ss_pred             HHHHHHHHhccC------CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          154 EFKMAQEYFKSA------QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       154 ~~~~l~~~l~~~------~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      ....+..+++..      ..-+++|+=||.|.+..-+...|. .-+.++|+++.+.+..+.+....     ....++.+|
T Consensus        69 ~~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~~-----p~~~~~~~D  142 (482)
T 3me5_A           69 EFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYCD-----PATHHFNED  142 (482)
T ss_dssp             HHHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCCC-----TTTCEEESC
T ss_pred             HHHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhcccC-----CCcceeccc
Confidence            345555555542      235799999999999999998875 34889999999888777654211     234567788


Q ss_pred             CCCC
Q 021344          228 VCRL  231 (314)
Q Consensus       228 ~~~l  231 (314)
                      +.++
T Consensus       143 I~~i  146 (482)
T 3me5_A          143 IRDI  146 (482)
T ss_dssp             THHH
T ss_pred             hhhh
Confidence            7654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=84.14  E-value=3.9  Score=33.59  Aligned_cols=76  Identities=18%  Similarity=0.130  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCcc--cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCe-EEEEecCC-CCCCCCCchhh
Q 021344          166 QGGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVC-RLPFASGFVDA  240 (314)
Q Consensus       166 ~~~~iLDiGcG~--G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v-~~~~~d~~-~lp~~~~~fD~  240 (314)
                      .+++||-.|+..  |. ++..|++.+.  +|++++-++...+....          .++ .++.+|+. .+.-.-+.+|+
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~D~   87 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGPELRE----------RGASDIVVANLEEDFSHAFASIDA   87 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH----------TTCSEEEECCTTSCCGGGGTTCSE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHHHHHh----------CCCceEEEcccHHHHHHHHcCCCE
Confidence            467899998643  32 4555566665  99999998876554433          467 89999986 22111236898


Q ss_pred             heecchhccCCCH
Q 021344          241 VHAGAALHCWPSP  253 (314)
Q Consensus       241 V~~~~vl~h~~d~  253 (314)
                      |+.........++
T Consensus        88 vi~~ag~~~~~~~  100 (236)
T 3e8x_A           88 VVFAAGSGPHTGA  100 (236)
T ss_dssp             EEECCCCCTTSCH
T ss_pred             EEECCCCCCCCCc
Confidence            8876654443343

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=83.90  E-value=4.6  Score=34.39  Aligned_cols=104  Identities=20%  Similarity=0.309  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHH-HHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC--
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSEN-MLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~-~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~--  234 (314)
                      .++++|-.|++.|-   .+..|++.|.  +|+.++.+.. ..+...+.+...+    .++.++.+|+.+..     +.  
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~  101 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG----SDAACVKANVGVVEDIVRMFEEA  101 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHH
Confidence            35678888876652   4555666666  8999988753 3344434444333    57888999987632     00  


Q ss_pred             ---CCchhhheecchhccCC-----CHH--------------HHHHHHHhhcccCcEEEEEec
Q 021344          235 ---SGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         -+..|+++.+..+....     +++              .+++.+.+.|+.+|.++....
T Consensus       102 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          102 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence               13578888765543221     111              245666677777788776653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=83.80  E-value=6.9  Score=32.39  Aligned_cols=74  Identities=18%  Similarity=0.254  Sum_probs=50.6

Q ss_pred             CCCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----C-CC
Q 021344          165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS  235 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~-~~  235 (314)
                      .++++||-.|++.|-   ++..|++.|.  +|+.++.++..++...+.+.       .++.+..+|+.+..     + .-
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~   82 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALK-------DNYTIEVCNLANKEECSNLISKT   82 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-------SSEEEEECCTTSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhc-------cCccEEEcCCCCHHHHHHHHHhc
Confidence            357789988877652   5566666776  99999999887776655432       57888999987632     1 12


Q ss_pred             Cchhhheecchh
Q 021344          236 GFVDAVHAGAAL  247 (314)
Q Consensus       236 ~~fD~V~~~~vl  247 (314)
                      +..|+++.+..+
T Consensus        83 ~~id~li~~Ag~   94 (249)
T 3f9i_A           83 SNLDILVCNAGI   94 (249)
T ss_dssp             SCCSEEEECCC-
T ss_pred             CCCCEEEECCCC
Confidence            368888876553

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=83.75  E-value=3.9  Score=34.35  Aligned_cols=73  Identities=25%  Similarity=0.279  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      .++++|-.|++.|   .++..|++.|.  +|+.+|.++...+...+.+       ..++.++.+|+.+...         
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~   77 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEI-------GPAAYAVQMDVTRQDSIDAAIAATV   77 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCCceEEEeeCCCHHHHHHHHHHHH
Confidence            4678999997765   25666777776  9999999987766655543       2568899999976320         


Q ss_pred             -CCCchhhheecchh
Q 021344          234 -ASGFVDAVHAGAAL  247 (314)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (314)
                       .-+..|+++.+..+
T Consensus        78 ~~~g~id~lv~~Ag~   92 (259)
T 4e6p_A           78 EHAGGLDILVNNAAL   92 (259)
T ss_dssp             HHSSSCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence             11368888876554

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=83.71  E-value=5.3  Score=33.25  Aligned_cols=76  Identities=21%  Similarity=0.268  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      .++++|-.|++.|   .++..|++.|.  +|+.+|.++..++...+.+...+    .++.++.+|+.+...         
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG----GTAISVAVDVSDPESAKAMADRTL   81 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            4678999998765   25667777776  89999999988888777776644    678999999976420         


Q ss_pred             -CCCchhhheecchh
Q 021344          234 -ASGFVDAVHAGAAL  247 (314)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (314)
                       .-+..|+++.+..+
T Consensus        82 ~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           82 AEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence             01357888876543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=83.67  E-value=6.4  Score=33.13  Aligned_cols=75  Identities=21%  Similarity=0.225  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      .++++|-.|++.|-   .+..|++.|.  +|+.+|.++..++...+.+...+    .++.++.+|+.+...         
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~   83 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG----RRALSVGTDITDDAQVAHLVDETM   83 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            46789999987763   5677777776  89999999988887777776654    689999999976420         


Q ss_pred             -CCCchhhheecch
Q 021344          234 -ASGFVDAVHAGAA  246 (314)
Q Consensus       234 -~~~~fD~V~~~~v  246 (314)
                       .-+..|+++.+..
T Consensus        84 ~~~g~id~lv~nAg   97 (264)
T 3ucx_A           84 KAYGRVDVVINNAF   97 (264)
T ss_dssp             HHTSCCSEEEECCC
T ss_pred             HHcCCCcEEEECCC
Confidence             1136788887653

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=83.54  E-value=4.4  Score=33.82  Aligned_cols=76  Identities=22%  Similarity=0.247  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC--
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~-s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~--  234 (314)
                      .+++||-.|++.|   .++..|++.+.  +|+.++- ++...+...+.+...+    .++.++.+|+.+..     +.  
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~   79 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG----GEAIAVKGDVTVESDVINLVQSA   79 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHHHHHHH
Confidence            3567888886654   24555666665  8999998 7766665555554433    57888999987632     10  


Q ss_pred             ---CCchhhheecchh
Q 021344          235 ---SGFVDAVHAGAAL  247 (314)
Q Consensus       235 ---~~~fD~V~~~~vl  247 (314)
                         -+.+|+|+....+
T Consensus        80 ~~~~g~id~li~~Ag~   95 (261)
T 1gee_A           80 IKEFGKLDVMINNAGL   95 (261)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence               1257888765543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=83.12  E-value=6  Score=34.14  Aligned_cols=77  Identities=26%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C--
Q 021344          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A--  234 (314)
Q Consensus       165 ~~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~--  234 (314)
                      -.++++|-.|++.|   .++..|++.|.  +|+.++.++..++.+.+.+...+    .++.++.+|+.+...     .  
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~~~~~  102 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG----FDAHGVVCDVRHLDEMVRLADEA  102 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHHHHHH
Confidence            35778999998875   25666777776  99999999988888877776654    689999999977421     0  


Q ss_pred             ---CCchhhheecchh
Q 021344          235 ---SGFVDAVHAGAAL  247 (314)
Q Consensus       235 ---~~~fD~V~~~~vl  247 (314)
                         -+..|+++.+..+
T Consensus       103 ~~~~g~id~lvnnAg~  118 (301)
T 3tjr_A          103 FRLLGGVDVVFSNAGI  118 (301)
T ss_dssp             HHHHSSCSEEEECCCC
T ss_pred             HHhCCCCCEEEECCCc
Confidence               1367888876554

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=83.08  E-value=3.9  Score=34.53  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=63.7

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCC---HHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS---ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s---~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~------  233 (314)
                      .++++|-.|++.|-   .+..|++.|.  +|+.++.+   ...++...+.+...+    .++.++.+|+.+...      
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~   83 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQG----AKVALYQSDLSNEEEVAKLFD   83 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTTT----CEEEEEECCCCSHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHH
Confidence            46789999987653   4555566665  89888654   445555555554433    678999999976420      


Q ss_pred             ----CCCchhhheecchhccCC-----CH--------------HHHHHHHHhhcccCcEEEEEec
Q 021344          234 ----ASGFVDAVHAGAALHCWP-----SP--------------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ----~~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                          .-+..|+++.+..+....     ++              ..+.+.+.+.|+++|.++....
T Consensus        84 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS  148 (262)
T 3ksu_A           84 FAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT  148 (262)
T ss_dssp             HHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence                013678887755433221     11              1345566667777888877653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=82.31  E-value=3.9  Score=34.33  Aligned_cols=104  Identities=7%  Similarity=0.058  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcCc--c--cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC------
Q 021344          165 AQGGLLVDVSCG--S--GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------  233 (314)
Q Consensus       165 ~~~~~iLDiGcG--~--G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~------  233 (314)
                      .++++||-.|++  .  |. ++..|++.|.  +|+.++.+....+.+++..+..     .++.++.+|+.+...      
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~   84 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEF-----GSELVFPCDVADDAQIDALFA   84 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHT-----TCCCEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHc-----CCcEEEECCCCCHHHHHHHHH
Confidence            357899999965  3  32 5566677776  9999988865445444443332     357889999876320      


Q ss_pred             ----CCCchhhheecchhccC----------CCH--------------HHHHHHHHhhcccCcEEEEEec
Q 021344          234 ----ASGFVDAVHAGAALHCW----------PSP--------------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ----~~~~fD~V~~~~vl~h~----------~d~--------------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                          .-+..|+++.+..+...          .+.              ..+++.+.+.++++|.++....
T Consensus        85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           85 SLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             HHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence                11367888876544321          111              1345666677777888776553

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=82.18  E-value=1.8  Score=33.38  Aligned_cols=94  Identities=18%  Similarity=0.164  Sum_probs=52.9

Q ss_pred             CCCCeEEEEcCcc-cHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCCCch
Q 021344          165 AQGGLLVDVSCGS-GLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFV  238 (314)
Q Consensus       165 ~~~~~iLDiGcG~-G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~~~~~f  238 (314)
                      .++.+|+-+|+|. |.. +..|.+.+.  +|+++|.++..++.+++         ..++..+.+|..+..    ..-..+
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~--~V~vid~~~~~~~~~~~---------~~g~~~~~~d~~~~~~l~~~~~~~a   85 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGH--SVVVVDKNEYAFHRLNS---------EFSGFTVVGDAAEFETLKECGMEKA   85 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCGGGGGGSCT---------TCCSEEEESCTTSHHHHHTTTGGGC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHh---------cCCCcEEEecCCCHHHHHHcCcccC
Confidence            3567899999987 543 444455554  99999998865544321         134556667754321    011346


Q ss_pred             hhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEe
Q 021344          239 DAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~  274 (314)
                      |+|+..-     +++.  ..+..+.+.+.+...++...
T Consensus        86 d~Vi~~~-----~~~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           86 DMVFAFT-----NDDSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             SEEEECS-----SCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             CEEEEEe-----CCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence            7766532     3332  33344445455555666555

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=82.14  E-value=5  Score=34.49  Aligned_cols=92  Identities=12%  Similarity=0.054  Sum_probs=53.9

Q ss_pred             CeEEEEcCcc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE------ecCC--CC-CCCC-
Q 021344          168 GLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR------ADVC--RL-PFAS-  235 (314)
Q Consensus       168 ~~iLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~------~d~~--~l-p~~~-  235 (314)
                      .+|.-||+|. |. ++..+.+.+.  +|+.+|.++..++..++.          .+....      ..+.  .. .... 
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~   71 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN--DVTLIDQWPAHIEAIRKN----------GLIADFNGEEVVANLPIFSPEEIDHQ   71 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHH----------CEEEEETTEEEEECCCEECGGGCCTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHhC----------CEEEEeCCCeeEecceeecchhhccc
Confidence            4789999987 43 5566666665  999999999877766552          122111      0110  10 0111 


Q ss_pred             -CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          236 -GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       236 -~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                       ..+|+|+..---.   ....+++++...++++..++...
T Consensus        72 ~~~~d~vi~~v~~~---~~~~v~~~l~~~l~~~~~iv~~~  108 (316)
T 2ew2_A           72 NEQVDLIIALTKAQ---QLDAMFKAIQPMITEKTYVLCLL  108 (316)
T ss_dssp             SCCCSEEEECSCHH---HHHHHHHHHGGGCCTTCEEEECC
T ss_pred             CCCCCEEEEEeccc---cHHHHHHHHHHhcCCCCEEEEec
Confidence             1578877643211   13566778888888877665543

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=82.06  E-value=6.2  Score=33.71  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=51.2

Q ss_pred             CeEEEEcC-cc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          168 GLLVDVSC-GS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       168 ~~iLDiGc-G~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .+|.=||+ |. |. ++..+.+.+.  +|+++|.++..++.+.+    .+      +..  .+..+   .-...|+|+..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~----~g------~~~--~~~~~---~~~~aDvVi~a   74 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEGRDRLQG----MG------IPL--TDGDG---WIDEADVVVLA   74 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHHHHHHHH----TT------CCC--CCSSG---GGGTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHh----cC------CCc--CCHHH---HhcCCCEEEEc
Confidence            47999999 86 44 5666666665  89999999887766654    11      111  12111   11247887764


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEE
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i  272 (314)
                      ---..   ...+++++...+++|..++-
T Consensus        75 v~~~~---~~~v~~~l~~~l~~~~ivv~   99 (286)
T 3c24_A           75 LPDNI---IEKVAEDIVPRVRPGTIVLI   99 (286)
T ss_dssp             SCHHH---HHHHHHHHGGGSCTTCEEEE
T ss_pred             CCchH---HHHHHHHHHHhCCCCCEEEE
Confidence            32111   24566777777777765543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=81.85  E-value=4.6  Score=34.28  Aligned_cols=85  Identities=8%  Similarity=0.104  Sum_probs=51.0

Q ss_pred             eEEEEcCcc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344          169 LLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (314)
Q Consensus       169 ~iLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v  246 (314)
                      +|.=||+|. |. ++..+.+.+.  +|+++|.++..++.+.+    .+    .... ...|..+.    ...|+|+..--
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~----~g----~~~~-~~~~~~~~----~~~D~vi~av~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVE----RQ----LVDE-AGQDLSLL----QTAKIIFLCTP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH----TT----SCSE-EESCGGGG----TTCSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHh----CC----CCcc-ccCCHHHh----CCCCEEEEECC
Confidence            577899987 44 5556666665  89999999987766543    12    1111 12232222    35788876432


Q ss_pred             hccCCCHHHHHHHHHhhcccCcEEE
Q 021344          247 LHCWPSPSNAVAEISRILRSGGVFV  271 (314)
Q Consensus       247 l~h~~d~~~~l~~i~r~LkpGG~l~  271 (314)
                      -.   ....+++++...+++|..++
T Consensus        67 ~~---~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           67 IQ---LILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             HH---HHHHHHHHHGGGSCTTCEEE
T ss_pred             HH---HHHHHHHHHHhhCCCCCEEE
Confidence            11   12456777777888877554

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=81.78  E-value=6.7  Score=32.86  Aligned_cols=76  Identities=17%  Similarity=0.226  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C---
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A---  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~---  234 (314)
                      .++++|-.|++.|-   .+..|++.|.  +|+.+|.++...+...+.+...+    .++.++.+|+.+...     .   
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~   84 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG----GKAIGLECNVTDEQHREAVIKAAL   84 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHHHH
Confidence            46788988887653   5667777776  89999999988877777666644    689999999976421     0   


Q ss_pred             --CCchhhheecchh
Q 021344          235 --SGFVDAVHAGAAL  247 (314)
Q Consensus       235 --~~~fD~V~~~~vl  247 (314)
                        -+..|+++.+..+
T Consensus        85 ~~~g~id~lv~nAg~   99 (256)
T 3gaf_A           85 DQFGKITVLVNNAGG   99 (256)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence              1367888876554

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4

Probab=81.67  E-value=1.6  Score=30.38  Aligned_cols=29  Identities=21%  Similarity=0.532  Sum_probs=19.6

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCcccc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (314)
                      .-||.|+..+.....         ...+.|+.|++.|=
T Consensus        26 ~wCP~C~~~~~~~~~---------~~~v~C~~C~~~FC   54 (86)
T 2ct7_A           26 LWCAQCSFGFIYERE---------QLEATCPQCHQTFC   54 (86)
T ss_dssp             ECCSSSCCCEECCCS---------CSCEECTTTCCEEC
T ss_pred             eECcCCCchheecCC---------CCceEeCCCCCccc
Confidence            349999987754321         13578999988773

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=81.53  E-value=4  Score=34.23  Aligned_cols=76  Identities=13%  Similarity=0.091  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-----C---
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A---  234 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-----~---  234 (314)
                      .++++|-.|++.|-   ++..|++.|.  +|+.+|.++..++...+.++..+    .++.++.+|+.+...     .   
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~   79 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG----GRIVARSLDARNEDEVTAFLNAAD   79 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT----CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CeEEEEECcCCCHHHHHHHHHHHH
Confidence            46789999988763   5666777776  99999999887777777666654    689999999976420     0   


Q ss_pred             -CCchhhheecchh
Q 021344          235 -SGFVDAVHAGAAL  247 (314)
Q Consensus       235 -~~~fD~V~~~~vl  247 (314)
                       .+..|+++.+..+
T Consensus        80 ~~g~id~lv~nAg~   93 (252)
T 3h7a_A           80 AHAPLEVTIFNVGA   93 (252)
T ss_dssp             HHSCEEEEEECCCC
T ss_pred             hhCCceEEEECCCc
Confidence             1467888876554

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=81.10  E-value=6.1  Score=33.73  Aligned_cols=76  Identities=16%  Similarity=0.147  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHH-hcCCCCCCCeEEEEecCCC----CC----
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIK-QDNTILTSNLALVRADVCR----LP----  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~-~~~~~a~~~~~-~~~~~~~~~v~~~~~d~~~----lp----  232 (314)
                      .++++|-.|++.|   .++..|++.|.  +|+.++.++ ..++...+.+. ..+    .++.++.+|+.+    ..    
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~~----~~~~~~~~Dv~~~~~~~~~v~~   95 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNSAEAAVSLADELNKERS----NTAVVCQADLTNSNVLPASCEE   95 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSCHHHHHHHHHHHHHHST----TCEEEEECCCSCSTTHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhhcC----CceEEEEeecCCccCCHHHHHH
Confidence            3668888887765   25666677776  899999886 65555555443 222    578899999987    21    


Q ss_pred             -C-----CCCchhhheecchh
Q 021344          233 -F-----ASGFVDAVHAGAAL  247 (314)
Q Consensus       233 -~-----~~~~fD~V~~~~vl  247 (314)
                       +     .-+..|+++.+..+
T Consensus        96 ~~~~~~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A           96 IINSCFRAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHhcCCCCEEEECCCC
Confidence             0     01357888876543

>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A

Probab=81.05  E-value=0.2  Score=34.47  Aligned_cols=36  Identities=19%  Similarity=0.615  Sum_probs=20.2

Q ss_pred             eeccCCCcc-chhc------CCCCcccccccc-CceecCCCCccc
Q 021344           61 FSCPICYEP-LIRK------GPTGLTLGAIYR-SGFKCRKCDKTY   97 (314)
Q Consensus        61 l~CP~C~~~-l~~~------~~~~~~~~~i~~-~~l~C~~C~~~~   97 (314)
                      ..||+|++. +...      ...+. ...+.. ....|++||..|
T Consensus         3 m~Cp~Cg~~~l~~~~~~~~~~~~G~-~~~I~~Vp~~~C~~CGE~~   46 (78)
T 3ga8_A            3 MKCPVCHQGEMVSGIKDIPYTFRGR-KTVLKGIHGLYCVHCEESI   46 (78)
T ss_dssp             CBCTTTSSSBEEEEEEEEEEEETTE-EEEEEEEEEEEETTTCCEE
T ss_pred             eECCCCCCCeeEeEEEEEEEEECCE-EEEEcCceeEECCCCCCEE
Confidence            579999975 3211      01111 112222 578999998776

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=80.80  E-value=6.4  Score=33.03  Aligned_cols=76  Identities=21%  Similarity=0.203  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      .++++|-.|++.|   .++..|++.|.  +|+.++.++..++...+.+...+    .++.++.+|+.+...         
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~  101 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG----GEAESHACDLSHSDAIAAFATGVL  101 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC----CceeEEEecCCCHHHHHHHHHHHH
Confidence            4678998887664   24566666676  89999999988887777776644    678999999976421         


Q ss_pred             -CCCchhhheecchh
Q 021344          234 -ASGFVDAVHAGAAL  247 (314)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (314)
                       .-+..|+++.+..+
T Consensus       102 ~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A          102 AAHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHHSCCSEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence             01357888876554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=80.64  E-value=7.9  Score=32.89  Aligned_cols=75  Identities=15%  Similarity=0.116  Sum_probs=53.7

Q ss_pred             CCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC----------
Q 021344          167 GGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----------  233 (314)
Q Consensus       167 ~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~----------  233 (314)
                      ++++|-.|++.|-   ++..|++.|.  +|+.++.++..++...+.+...+    .++.++.+|+.+...          
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~   97 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG----HDVDGSSCDVTSTDEVHAAVAAAVE   97 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            6789999987652   5666777776  89999999988887777766544    679999999976420          


Q ss_pred             CCCchhhheecchh
Q 021344          234 ASGFVDAVHAGAAL  247 (314)
Q Consensus       234 ~~~~fD~V~~~~vl  247 (314)
                      .-+..|+++.+..+
T Consensus        98 ~~g~id~lv~nAg~  111 (279)
T 3sju_A           98 RFGPIGILVNSAGR  111 (279)
T ss_dssp             HHCSCCEEEECCCC
T ss_pred             HcCCCcEEEECCCC
Confidence            01357888776544

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=80.52  E-value=7.6  Score=32.10  Aligned_cols=76  Identities=12%  Similarity=0.124  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      .++++|-.|++.|   .++..|++.|.  +|+.++.++...+...+.++..+    .++.++.+|+.+...         
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~   77 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG----FKARGLVLNISDIESIQNFFAEIK   77 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHH
Confidence            3568888887665   25666777776  99999999988887777776654    689999999976320         


Q ss_pred             -CCCchhhheecchh
Q 021344          234 -ASGFVDAVHAGAAL  247 (314)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (314)
                       ..+..|+++.+..+
T Consensus        78 ~~~~~id~li~~Ag~   92 (247)
T 3lyl_A           78 AENLAIDILVNNAGI   92 (247)
T ss_dssp             HTTCCCSEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence             12357888876543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=80.31  E-value=8.9  Score=35.52  Aligned_cols=95  Identities=19%  Similarity=0.227  Sum_probs=57.1

Q ss_pred             CCeEEEEcCcc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-------cC----CC-CCCCeEEEEecCCCCC
Q 021344          167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DN----TI-LTSNLALVRADVCRLP  232 (314)
Q Consensus       167 ~~~iLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~----~~-~~~~v~~~~~d~~~lp  232 (314)
                      -.+|.-||+|. |. ++..++..|.  +|+++|.++..++.+++.+..       .+    .. ......+ ..|...  
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~--  111 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE--  111 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG--
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH--
Confidence            35799999998 44 5666677665  999999999988877653321       00    00 0011222 333211  


Q ss_pred             CCCCchhhheecchhccCCCH---HHHHHHHHhhcccCcEEEE
Q 021344          233 FASGFVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpGG~l~i  272 (314)
                        -...|+|+..-.    .+.   ..+++++...++||.+++.
T Consensus       112 --~~~aDlVIeaVp----e~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          112 --LSTVDLVVEAVF----EDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             --GTTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             --HCCCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence              124677665321    232   4678888889988877654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=80.15  E-value=6  Score=33.13  Aligned_cols=75  Identities=24%  Similarity=0.255  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      .++++|-.|++.|-   ++..|++.|.  +|+.+|.++..++.+.+.+...+    .++.++.+|+.+...         
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~   78 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP----GQILTVQMDVRNTDDIQKMIEQID   78 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST----TCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            35688888876652   5666677776  89999999988888777665543    679999999976320         


Q ss_pred             -CCCchhhheecch
Q 021344          234 -ASGFVDAVHAGAA  246 (314)
Q Consensus       234 -~~~~fD~V~~~~v  246 (314)
                       .-+..|+++.+..
T Consensus        79 ~~~g~id~lv~nAg   92 (257)
T 3imf_A           79 EKFGRIDILINNAA   92 (257)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence             0135788876554

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=80.12  E-value=6.7  Score=33.48  Aligned_cols=89  Identities=9%  Similarity=0.128  Sum_probs=52.6

Q ss_pred             CeEEEEcCcc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          168 GLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       168 ~~iLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      .+|.=||+|. |. ++..+.+.+...+|+++|.++..++.+++    .+    . ......|..+.   -...|+|+..-
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g----~-~~~~~~~~~~~---~~~aDvVilav   74 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RG----I-VDEATADFKVF---AALADVIILAV   74 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TT----S-CSEEESCTTTT---GGGCSEEEECS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cC----C-cccccCCHHHh---hcCCCEEEEcC
Confidence            4789999997 43 55666666534589999999887776654    12    1 10122233221   12468777643


Q ss_pred             hhccCCCHHHHHHHHHhh-cccCcEEE
Q 021344          246 ALHCWPSPSNAVAEISRI-LRSGGVFV  271 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~-LkpGG~l~  271 (314)
                      --..   ...+++++... +++|.+++
T Consensus        75 p~~~---~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           75 PIKK---TIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             CHHH---HHHHHHHHHTSCCCTTCEEE
T ss_pred             CHHH---HHHHHHHHHhcCCCCCCEEE
Confidence            2111   14567777777 88776554

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=80.04  E-value=1.1  Score=29.32  Aligned_cols=29  Identities=17%  Similarity=0.518  Sum_probs=22.4

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      -.+.|..|+.......          ...++|+.||+..
T Consensus        20 v~Y~C~~Cg~~~~l~~----------~~~iRC~~CG~RI   48 (63)
T 3h0g_L           20 MIYLCADCGARNTIQA----------KEVIRCRECGHRV   48 (63)
T ss_dssp             CCCBCSSSCCBCCCCS----------SSCCCCSSSCCCC
T ss_pred             eEEECCCCCCeeecCC----------CCceECCCCCcEE
Confidence            5689999999875432          2579999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	6e-16
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	8e-10
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	9e-10
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	9e-10
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	4e-09
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	6e-09
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	3e-08
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	3e-08
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	4e-08
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	2e-07
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	4e-07
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	4e-07
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	5e-07
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	7e-07
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	1e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	2e-05
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	3e-05
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	3e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	5e-05
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	6e-05
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	7e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	3e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	4e-04
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	4e-04
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	0.004

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 74.2 bits (181), Expect = 6e-16
 Identities = 42/216 (19%), Positives = 83/216 (38%), Gaps = 40/216 (18%)

Query: 61  FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
           FSCP+C++PL R+  +           + C +  +   +K+ Y++L  +   +       
Sbjct: 2   FSCPLCHQPLSREKNS-----------YICPQRHQFDMAKEGYVNLLPVQHKRSRDPGD- 49

Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQ-EYFKSAQGGLLVDVSCGSGL 179
            S E+ ++           R+ F  +G   P  +  +AQ       +   ++D+ CG G 
Sbjct: 50  -SAEMMQA-----------RRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGY 97

Query: 180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239
           ++  FA +        LD S+  ++       Q    +            RLPF+   +D
Sbjct: 98  YTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVA--------SSHRLPFSDTSMD 149

Query: 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
           A+    A            E++R+++ GG  +  T 
Sbjct: 150 AIIRIYAPC-------KAEELARVVKPGGWVITATP 178

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 8e-10
 Identities = 22/177 (12%), Positives = 46/177 (25%), Gaps = 23/177 (12%)

Query: 124 ELFRSPFVSFL-------YERGW-RQNFNRSGFPGPDE-----EFKMAQEYFKSAQ---G 167
           +L   P    L       Y           +  P   E      F +  +     +    
Sbjct: 93  KLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDD 152

Query: 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT------SNL 221
            L VD+  G G    + A +        ++ ++   +      ++    +       +  
Sbjct: 153 DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 212

Query: 222 ALVRADVCRLPFASGFVDA-VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277
            L R D     +     +  V         P   + + E    ++ GG  V +    
Sbjct: 213 TLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFA 269

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 55.7 bits (133), Expect = 9e-10
 Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 7/132 (5%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+  G+G  +  F+        + +D ++ M+     F ++            +    
Sbjct: 20  VLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRF---QQGTAE 74

Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL 289
            LPF     D +    A H +     AV E++R+L+  G F+      Y     +    +
Sbjct: 75  SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH--YAPEDPVLDEFV 132

Query: 290 REVMLIRIKSHL 301
             +  +R  SH+
Sbjct: 133 NHLNRLRDPSHV 144

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 54.8 bits (131), Expect = 9e-10
 Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 22/136 (16%)

Query: 151 PDEEF---------------KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVA 195
           PD+EF                +     +  +  + VDV CG+G  + + A       V A
Sbjct: 3   PDDEFIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR--VYA 60

Query: 196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN 255
           +D +   +      +++    L  N+ L+  D          +D    G +         
Sbjct: 61  IDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEI-- 116

Query: 256 AVAEISRILRSGGVFV 271
            +  I   L+ GG  +
Sbjct: 117 -LRIIKDKLKPGGRII 131

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 4e-09
 Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 40/174 (22%)

Query: 154 EFKMAQEYFKSAQ--GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 211
           + +   + F + +  G  L+D+  G  ++    A    +  +   DF E   ++   +++
Sbjct: 40  KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSA-CSHFEDITMTDFLEVNRQELGRWLQ 98

Query: 212 QDN---------------------------TILTSNLALVRADVCR------LPFASGFV 238
           ++                             +      ++  DV +         A    
Sbjct: 99  EEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPA 158

Query: 239 DAVHAGAALHC----WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV 288
           DA+ +   L        S   A+  I+ +LR GG  +    L  +   +   R+
Sbjct: 159 DALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 212

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 53.7 bits (128), Expect = 6e-09
 Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 6/129 (4%)

Query: 144 NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENM 202
            R  +   D    +    +K  +   +VD  CG G                  +D  E +
Sbjct: 5   TRDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETL 64

Query: 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISR 262
           L +  +  +                       +   D     A L    +P   + ++  
Sbjct: 65  LAEARELFRLLPYDSEFLE-----GDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIH 119

Query: 263 ILRSGGVFV 271
            ++ GG  +
Sbjct: 120 SVKKGGKII 128

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 5/153 (3%)

Query: 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208
           P  +E++       +   G  ++D+  GSG     +A+    +    +D S     Q   
Sbjct: 16  PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKR 74

Query: 209 FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
             ++       +     A              V    A       + A   +++ L+ GG
Sbjct: 75  RAEELGVSERVHFIHNDAAGYVANEKCDVAACVG---ATWIAGGFAGAEELLAQSLKPGG 131

Query: 269 VFV-GTTFLRYTSSTSLTGRVLREVMLIRIKSH 300
           + + G  + R   +T    +           + 
Sbjct: 132 IMLIGEPYWRQLPATEEIAQACGVSSTSDFLTL 164

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 17/165 (10%), Positives = 43/165 (26%), Gaps = 30/165 (18%)

Query: 135 YERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL------------VDVSCGSGLFSR 182
           Y   +R+  N S       E +  QE+      G++            + +  G+G    
Sbjct: 3   YVESFRRFLNHST------EHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDL 56

Query: 183 KFAK------SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----- 231
           +          G       ++ S   + +  + + + + +     A  +           
Sbjct: 57  QILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116

Query: 232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
                   D +H    L+        +     +L +    +    
Sbjct: 117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV 161

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 50.9 bits (121), Expect = 4e-08
 Identities = 14/134 (10%), Positives = 39/134 (29%), Gaps = 4/134 (2%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++ +   +G      A       V A++++  ++R+  D   +   I+  
Sbjct: 68  KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIP- 126

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279
              ++        +A+           +         +      L+ GG  +     R  
Sbjct: 127 ---ILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI 183

Query: 280 SSTSLTGRVLREVM 293
             T     + +E  
Sbjct: 184 DVTKDPKEIFKEQK 197

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 11/164 (6%)

Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLF 180
            + E     +      R W Q +         E         +      ++DV+CG+G+ 
Sbjct: 12  VAAEGIPDQYADGEAARVW-QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVD 70

Query: 181 SRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLPFASGF 237
           S    + G + + V A D       +     +++       +           +P   GF
Sbjct: 71  SIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF 130

Query: 238 VDAVHAGAALHCWPSPSN-------AVAEISRILRSGGVFVGTT 274
              +  G +    P           A+  I+ ++R GG+ V   
Sbjct: 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 17/140 (12%), Positives = 40/140 (28%), Gaps = 4/140 (2%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           GG +++V  G  + + K  ++        ++ ++ + ++  D+  +    +     L   
Sbjct: 54  GGRVLEVGFGMAIAASKVQEAPIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED 112

Query: 227 DVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS 283
               LP         D              +       R+L+ GGV        +     
Sbjct: 113 VAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMK 172

Query: 284 LTGRVLREVMLIRIKSHLLS 303
                +  +        LL 
Sbjct: 173 SKYSDITIMFEETQVPALLE 192

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 48.0 bits (113), Expect = 4e-07
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +G  ++D+ CG G    K+ ++G       +D +E  +       +  N      +    
Sbjct: 24  RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARV--RARNMKRRFKVFFRA 80

Query: 226 ADVCRLPFASGFV-DAVHAGAALHCWPSPSNAV----AEISRILRSGGVFVGTTF 275
            D        G   D + +  + H   S S ++      I+R LR GG F+ T  
Sbjct: 81  QDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++DV+ G G  +  FA       VVA D +E++L+    FI+ +       +      + 
Sbjct: 19  VLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76

Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS 280
                   V    A    H +P+P++ V+E  R+L+ GG  +        +
Sbjct: 77  FTDERFHIVTCRIAA---HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN 124

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 47.0 bits (111), Expect = 7e-07
 Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 24/155 (15%)

Query: 127 RSPFVSFLYER---GWRQ-NFNRSGFPGPDEEFKMAQEYFKSAQ-----GGLLVDVSCGS 177
           +S + S   E+   G+R+    RS         K+A    K  +        ++ +   S
Sbjct: 17  KSKYGSHYGEKVFDGYREWVPWRS---------KLAAMILKGHRLKLRGDERVLYLGAAS 67

Query: 178 GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237
           G      A       + A+++S     +  + +++ N     N+  +  D  +    SG 
Sbjct: 68  GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-----NIIPLLFDASKPWKYSGI 122

Query: 238 VDAVHAG-AALHCWPSPSNAVAEISRILRSGGVFV 271
           V+ V      +          A     L+  G  V
Sbjct: 123 VEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVV 157

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 31/199 (15%), Positives = 58/199 (29%), Gaps = 46/199 (23%)

Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEF-----KMAQEYFKSA--QGGLLVDVSCG 176
           + ++  F+   Y       ++  G P P+ E      +   + F     QG  L+D+  G
Sbjct: 5   DEYQKHFLPRDY---LATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSG 61

Query: 177 SGLFSRKFAKSGTYSGVVALDFSENMLRQC------------------------------ 206
             ++    A   ++  +   DF++    +                               
Sbjct: 62  PTIYQV-LAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRW 120

Query: 207 -YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC----WPSPSNAVAEIS 261
                K    +       V       P      D V    A+ C      +   A+  ++
Sbjct: 121 EEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLA 180

Query: 262 RILRSGGVFVGTTFLRYTS 280
            +L+ GG  V T  LR  S
Sbjct: 181 SLLKPGGHLVTTVTLRLPS 199

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +DV  G+G+     AK+G    V+ ++ S                 L   + +++  V  
Sbjct: 38  LDVGSGTGILCMFAAKAGARK-VIGIECSSISDYAVKIVKANK---LDHVVTIIKGKVEE 93

Query: 231 LPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILRSGGVFV 271
           +      VD + +    +C    S     +    + L   G+  
Sbjct: 94  VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +  +++DV CG+G+ S   AK+G    V+ +D SE + +            L   + L++
Sbjct: 35  KDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNK---LEDTITLIK 90

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNA---VAEISRILRSGGVFV 271
             +  +      VD + +    +     S     +   ++ L  GG   
Sbjct: 91  GKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 15/120 (12%), Positives = 34/120 (28%), Gaps = 8/120 (6%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
              K    G  +D+ CG+G  S   A +G        + +          +++       
Sbjct: 24  AAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPA------SMANLERIKAAEGL 77

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277
           +               G  D + +   +    +      +A + R  + GG  +    + 
Sbjct: 78  DNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  +++V  GSG  S     +    G +  ++  E+ L++  D + +       N+   R
Sbjct: 86  GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE--FYDIGNVRTSR 143

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           +D+        +       A +   P P N V +I+ +++ G V  
Sbjct: 144 SDIADFISDQMYD------AVIADIPDPWNHVQKIASMMKPGSVAT 183

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 11/119 (9%)

Query: 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI 216
           M + +    + G L+++    G F+ +  +    + +  ++ SE  +      +K   T 
Sbjct: 11  MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITY 68

Query: 217 LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEI-SRILRSGGVFVGTT 274
                                 D +     L     P   +  I    L  GG      
Sbjct: 69  --------IHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC 119

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 7e-05
 Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 8/131 (6%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  +++   GSG  S   +K+    G V++ +  ++         K        +     
Sbjct: 99  GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 158

Query: 226 ADVCRLPF--ASGFVDAVHAGAALHCW---PSPSNAVAEISRILRSGGVFVGTTFLRYTS 280
            D         SG  + + +           +P   +      L+ GGV     ++   +
Sbjct: 159 PDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCA--VYVVNIT 216

Query: 281 STSLTGRVLRE 291
                   +R 
Sbjct: 217 QVIELLDGIRT 227

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 12/130 (9%), Positives = 33/130 (25%), Gaps = 12/130 (9%)

Query: 154 EFKMAQEYFKSAQ---GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI 210
                 + ++  Q   G   +D+  G G    + A     +     +  ++         
Sbjct: 201 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQY 260

Query: 211 KQDN--------TILTSNLALVRADVCRLPFASGFVDAVHAGAALHC-WPSPSNAVAEIS 261
           ++           +     +L ++ V     A                    +  V +I 
Sbjct: 261 EELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKIL 320

Query: 262 RILRSGGVFV 271
           +  + G   +
Sbjct: 321 QTAKVGCKII 330

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 17/128 (13%)

Query: 159 QEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 215
           Q+Y+ S     G  ++   CG        +  G +  VV  + SE  + + +    +   
Sbjct: 10  QQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYH--VVGAELSEAAVERYFTERGEQPH 67

Query: 216 ILTSNLALV---------RADVCRLPFAS-GFVDAVHAGAALHCWPSPSNA--VAEISRI 263
           I +     V           D   L     G   A +  AA+   P+      V  +  +
Sbjct: 68  ITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEAL 127

Query: 264 LRSGGVFV 271
           +      +
Sbjct: 128 MPQACSGL 135

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 10/119 (8%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           DV CG+G+ S   AK G    V+ +D S  +               +  + L+R  +  +
Sbjct: 44  DVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNG---FSDKITLLRGKLEDV 99

Query: 232 PFASGFVDAVHA---GAALHCWPSPSNAVAEISRILRSGGVFV---GTTFLRYTSSTSL 284
                 VD + +   G  L         +      L  GG+      +  L     +  
Sbjct: 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQY 158

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 11/132 (8%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
            +      E            +D++CG+G  +                ++ ++ ++    
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF------KNTWAVDLSQEMLSE 74

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRS 266
            +           L   D+  L     F        + +              +S  L+ 
Sbjct: 75  AENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKE 134

Query: 267 GGVFVGTTFLRY 278
           GGVF+      Y
Sbjct: 135 GGVFIFDINSYY 146

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 14/151 (9%)

Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA---QGGLLVDVSCGSGLF 180
           EL+    ++  Y+  +R+   R        E    +E FK     +   ++D++CG+G+ 
Sbjct: 3   ELYTL--LAEYYDTIYRRRIER-----VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIP 55

Query: 181 SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240
           + + A+ G    VV LD  E MLR      K+ N  +      V     +  F    V  
Sbjct: 56  TLELAERGYE--VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD--AVTM 111

Query: 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             +              ++++  L+ GGVF+
Sbjct: 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.95
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.91
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.9
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.89
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.87
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.86
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.84
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.82
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.81
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.81
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.81
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.8
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.8
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.79
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.79
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.78
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.77
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.77
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.77
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.75
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.75
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.75
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.74
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.74
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.73
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.73
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.69
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.69
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.68
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.68
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.68
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.68
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.68
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.67
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.67
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.64
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.62
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.62
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.62
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.61
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.6
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.58
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.58
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.55
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.53
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.51
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.5
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.48
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.48
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.42
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.39
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.39
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.38
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.34
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.33
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.27
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.25
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.22
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.18
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.16
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.13
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.11
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.09
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.08
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.08
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.07
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.07
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.06
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.04
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.01
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.99
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.92
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.88
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.86
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.85
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.81
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.81
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.8
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.8
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.78
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.74
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.73
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.7
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.69
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.68
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.66
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.65
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.63
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.54
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.52
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.49
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.46
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.43
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.39
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.38
d2jnya1	59	Uncharacterized protein Cgl1405/cg1592 {Corynebact	98.31
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2pk7a1	59	Uncharacterized protein PFL1779 {Pseudomonas fluor	98.25
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.22
d2hf1a1	59	Hypothetical protein CV3345 {Chromobacterium viola	98.21
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.17
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.07
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.93
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.74
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.67
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.62
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.49
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.41
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.34
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.2
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.19
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.14
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.03
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.97
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.97
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.96
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.85
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.85
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.75
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.7
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.62
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.48
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.37
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.22
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.16
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.11
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.04
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	96.04
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.87
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.82
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.79
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.74
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.55
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.54
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.34
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.93
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.41
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.32
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.31
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	93.98
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	93.9
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	93.74
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	93.34
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	92.87
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	92.54
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	92.07
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.81
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.24
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.98
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	90.9
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	90.49
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	90.31
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.28
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	90.07
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	89.96
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	89.95
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	89.95
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	89.92
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.91
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.57
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	89.46
d1pfva3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch	89.21
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	89.19
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.18
d1rqga3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro	89.11
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	88.77
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	88.75
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	88.52
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.26
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	87.27
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	87.26
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	87.05
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	86.87
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	86.34
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	85.85
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	84.87
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	84.77
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	84.53
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	84.23
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	84.13
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	84.11
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.92
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	83.86
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	83.45
d2j9ub1	47	Vacuolar protein-sorting-associated protein 36, VP	83.44
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	82.98
d1neea2	37	Zinc-binding domain of translation initiation fact	82.41
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	82.29
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	81.48
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	81.3
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	81.2
d1twfl_	46	RBP12 subunit of RNA polymerase II {Baker's yeast	80.79

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.9e-29  Score=217.40  Aligned_cols=178  Identities=23%  Similarity=0.407  Sum_probs=134.6

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccCccCcccccccccccccChhhHHHHHHhH
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGW  139 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w  139 (314)
                      .|+||+|+++|....           +.++|.+|++....++||+++++......+....  ..+++.+           
T Consensus         1 sf~CP~C~~~L~~~~-----------~~l~C~~~h~fd~~~~Gy~~ll~~~~~~~~~~~~--~~~~~~a-----------   56 (268)
T d1p91a_           1 SFSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGD--SAEMMQA-----------   56 (268)
T ss_dssp             CBBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSS--SHHHHHH-----------
T ss_pred             CccCCCCChhhhcCC-----------CeEECCCCCccccccCceEecccccccccCCCCC--CHHHHHH-----------
Confidence            378999999986543           5799999988778889999998765544333221  0111111           


Q ss_pred             HHhcccCCCCC--chHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC
Q 021344          140 RQNFNRSGFPG--PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL  217 (314)
Q Consensus       140 ~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~  217 (314)
                      ++.+...++..  .+.....+...+. .++.+|||||||+|.++..+++.+++.+++|+|+|+.+++.|+++        
T Consensus        57 r~~~l~~g~~~~l~~~~~~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~--------  127 (268)
T d1p91a_          57 RRAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------  127 (268)
T ss_dssp             HHHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc--------
Confidence            23333333222  1222333444433 357799999999999999999998888999999999999999874        


Q ss_pred             CCCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          218 TSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       218 ~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ..++.++++|+.++|+++++||+|++.++++|       ++++.|+|||||++++.++..
T Consensus       128 ~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~  180 (268)
T d1p91a_         128 YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGP  180 (268)
T ss_dssp             CTTSEEEECCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred             cccccceeeehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence            36899999999999999999999999998877       578999999999999999653

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=4.6e-24  Score=182.68  Aligned_cols=118  Identities=18%  Similarity=0.321  Sum_probs=109.8

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+++.+.++.+++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|++++...+   ..++.++++|++++|++
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~---~~~~~~~~~d~~~~~~~   79 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPFP   79 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCSC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhcccc---ccccccccccccccccc
Confidence            45788888999999999999999999999999886  99999999999999999988875   36899999999999999


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +++||+|++.++++|++|+..+++++.++|||||++++.++..
T Consensus        80 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence            9999999999999999999999999999999999999987654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.90  E-value=8.9e-24  Score=180.12  Aligned_cols=117  Identities=25%  Similarity=0.392  Sum_probs=107.0

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      ..+.+.+..+++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++++..+   ..+++++++|++++|+++
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~---~~~i~~~~~d~~~l~~~~   79 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFTD   79 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSCT
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccc---cccccccccccccccccc
Confidence            3566678888899999999999999999999986  99999999999999999988775   478999999999999999


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++||+|++.+++||++|+.++++++.++|||||++++.++..
T Consensus        80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            999999999999999999999999999999999999988654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.89  E-value=1.5e-22  Score=178.03  Aligned_cols=119  Identities=15%  Similarity=0.153  Sum_probs=106.3

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~  237 (314)
                      +.......++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|+++....+  ...+++++++|+.++|+++++
T Consensus        59 l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~g--l~~~v~~~~~d~~~l~~~~~s  135 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDNS  135 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTTSCSSCTTC
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccc--ccccccccccccccccccccc
Confidence            3334456788999999999999999998873 3499999999999999999998877  357899999999999999999


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCC
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      ||+|++..+++|++|+..+++++.++|||||++++.++....
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~  177 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKED  177 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCC
Confidence            999999999999999999999999999999999998876643

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=6.4e-22  Score=170.34  Aligned_cols=125  Identities=15%  Similarity=0.178  Sum_probs=111.9

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      +...+.+..+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|+++....+  ...+++++.+|+
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~g--l~~~v~~~~~d~   92 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDA   92 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhh--ccccchhhhhHH
Confidence            4556677788999999999999999999999999998875 3599999999999999999998887  456899999999


Q ss_pred             CCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .++ +.+++||+|++..+++|++|+..+++++.++|||||++++.++..
T Consensus        93 ~~~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~  140 (245)
T d1nkva_          93 AGY-VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW  140 (245)
T ss_dssp             TTC-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred             hhc-cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccc
Confidence            987 457899999999999999999999999999999999999987654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=1.1e-21  Score=165.93  Aligned_cols=106  Identities=26%  Similarity=0.432  Sum_probs=96.5

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++....+    ..+.++.+|+.++++++++||+|++.
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~~----~~~~~~~~d~~~l~~~~~~fD~I~~~  109 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDKTFDYVIFI  109 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhcccc----ccccccccccccccccCcCceEEEEe
Confidence            3578999999999999999999875  99999999999999999888765    67889999999999999999999999


Q ss_pred             chhccCC--CHHHHHHHHHhhcccCcEEEEEecc
Q 021344          245 AALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       245 ~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+++|++  |+.++|+++.++|||||++++..+.
T Consensus       110 ~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            9999997  5668999999999999999987754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=4.6e-21  Score=164.20  Aligned_cols=100  Identities=29%  Similarity=0.331  Sum_probs=89.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec-
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-  244 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~-  244 (314)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++.         ...++.+|++++++++++||+|++. 
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~---------~~~~~~~~~~~l~~~~~~fD~ii~~~  110 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKG---------VKNVVEAKAEDLPFPSGAFEAVLALG  110 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHT---------CSCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             CCCEEEEECCCCchhcccccccce--EEEEeeccccccccccccc---------ccccccccccccccccccccceeeec
Confidence            477999999999999999999876  9999999999999999852         2236789999999999999999974 


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .++||++|+..+|+++.++|||||++++.+++
T Consensus       111 ~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         111 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             chhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            68999999999999999999999999998854

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.82  E-value=2.3e-20  Score=158.47  Aligned_cols=107  Identities=12%  Similarity=0.163  Sum_probs=94.3

Q ss_pred             HhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhh
Q 021344          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~  240 (314)
                      +....++++|||||||+|.++..+++.+.  +|+|+|+|+++++.|+++.       ..++.++.+|++..++ +++||+
T Consensus        15 ~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~-~~~fD~   84 (225)
T d2p7ia1          15 FTPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQL-PRRYDN   84 (225)
T ss_dssp             HGGGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCCC-SSCEEE
T ss_pred             hhhhCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhccc-------cccccccccccccccc-cccccc
Confidence            33444577999999999999999999886  8999999999999999863       2579999999988776 578999


Q ss_pred             heecchhccCCCHHHHHHHHH-hhcccCcEEEEEeccc
Q 021344          241 VHAGAALHCWPSPSNAVAEIS-RILRSGGVFVGTTFLR  277 (314)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~i~-r~LkpGG~l~i~~~~~  277 (314)
                      |++.+||||++|+..+++++. ++|||||.+++..++.
T Consensus        85 I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~  122 (225)
T d2p7ia1          85 IVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  122 (225)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             ccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence            999999999999999999998 7999999999998653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=3.6e-20  Score=155.12  Aligned_cols=96  Identities=21%  Similarity=0.294  Sum_probs=88.3

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ++.+|||||||+|.++..+.      +++|+|+|+.+++.|++          .++.++++|++++|+++++||+|++.+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~----------~~~~~~~~d~~~l~~~~~~fD~I~~~~   99 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK----------RGVFVLKGTAENLPLKDESFDFALMVT   99 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH----------TTCEEEECBTTBCCSCTTCEEEEEEES
T ss_pred             CCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc----------ccccccccccccccccccccccccccc
Confidence            45689999999999987773      57899999999999987          578999999999999999999999999


Q ss_pred             hhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       246 vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +|+|++|+..+++++.++|||||.+++.++..
T Consensus       100 ~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_         100 TICFVDDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             CGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccccccccccchhhhhhcCCCCceEEEEecCC
Confidence            99999999999999999999999999998754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=5.9e-20  Score=158.05  Aligned_cols=112  Identities=24%  Similarity=0.379  Sum_probs=95.7

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~  237 (314)
                      +.+.....+..+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++++..+    .+++++++|+++++++ ++
T Consensus        33 ~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~~----~~i~~~~~d~~~l~~~-~~  105 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAFK-NE  105 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCCC-SC
T ss_pred             HHHHhcCCCCCEEEEeCCCCCccchhhcccce--EEEEEeecccccccccccccccc----ccchheehhhhhcccc-cc
Confidence            33444555678999999999999999999886  99999999999999999988765    5899999999999986 58


Q ss_pred             hhhheec-chhccCC--CHHHHHHHHHhhcccCcEEEEEecc
Q 021344          238 VDAVHAG-AALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       238 fD~V~~~-~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ||+|++. .+++|+.  +...+|++++++|||||++++....
T Consensus       106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            9999986 5788874  4568999999999999999986643

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.81  E-value=1.2e-19  Score=159.22  Aligned_cols=109  Identities=16%  Similarity=0.205  Sum_probs=97.9

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhh
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V  241 (314)
                      ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|+++.+..+    .+++++++|+.++++. ++||+|
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~----~~~~f~~~d~~~~~~~-~~fD~v   98 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIELN-DKYDIA   98 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS----SEEEEEESCTTTCCCS-SCEEEE
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc----cccccccccccccccc-CCceEE
Confidence            445678999999999999999998754 4689999999999999999988765    5899999999998875 579999


Q ss_pred             eecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++.++++|++||..+|+++.++|||||.+++.++.
T Consensus        99 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          99 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            99999999999999999999999999999998864

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.3e-20  Score=158.12  Aligned_cols=112  Identities=12%  Similarity=0.139  Sum_probs=97.7

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ...++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.|+++++..+   ..+++++++|++++++++++||+|+
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~---~~~~~f~~~d~~~~~~~~~~fD~I~  132 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIW  132 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEE
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccc---ccccccccccccccccccccccccc
Confidence            345677999999999999998876653 489999999999999999887764   2678999999999998889999999


Q ss_pred             ecchhccCCCHH--HHHHHHHhhcccCcEEEEEecccC
Q 021344          243 AGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       243 ~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      +.++++|++++.  +++++++++|||||.+++.+....
T Consensus       133 ~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~  170 (222)
T d2ex4a1         133 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ  170 (222)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred             cccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccc
Confidence            999999999874  799999999999999999876554

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.80  E-value=3.1e-19  Score=148.38  Aligned_cols=109  Identities=21%  Similarity=0.273  Sum_probs=96.0

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ....+++|||||||+|..+..+++++.  +|+|+|+|+.+++.++++.+..+.   .++.+...|+..+++ +++||+|+
T Consensus        27 ~~~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~d~~~~~~-~~~fD~I~  100 (198)
T d2i6ga1          27 KVVAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEGL---DNLQTDLVDLNTLTF-DGEYDFIL  100 (198)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC---TTEEEEECCTTTCCC-CCCEEEEE
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhccc---cchhhhheecccccc-cccccEEE
Confidence            333456999999999999999999987  999999999999999998887763   679999999988776 67899999


Q ss_pred             ecchhccCCCH--HHHHHHHHhhcccCcEEEEEeccc
Q 021344          243 AGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       243 ~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +..+++|+++.  .++++++.++|||||++++.+...
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  137 (198)
T d2i6ga1         101 STVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD  137 (198)
T ss_dssp             EESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             EeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            99999999765  479999999999999999987654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.79  E-value=2.1e-19  Score=155.24  Aligned_cols=115  Identities=9%  Similarity=0.004  Sum_probs=99.0

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.+...+..+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++...     .+++++++|+++++++++
T Consensus        84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~~-----~~~~~~~~d~~~~~~~~~  157 (254)
T d1xtpa_          84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPPN  157 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCSS
T ss_pred             HHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhcccccc-----ccceeEEccccccccCCC
Confidence            444555666778999999999999998876643 38999999999999999876543     568999999999998889


Q ss_pred             chhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEeccc
Q 021344          237 FVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +||+|++.++++|++|++  ++|+++.++|||||++++.+...
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence            999999999999998875  78999999999999999987654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.79  E-value=5.9e-19  Score=149.60  Aligned_cols=109  Identities=17%  Similarity=0.245  Sum_probs=94.3

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      .++.+|||+|||+|..+..+++.  .++.+|+|+|+|+.|++.|+++++..+  ...++.+..+|+.+.+  .+.+|+|+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~--~~~~~~~~~~d~~~~~--~~~~d~i~  113 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVE--IKNASMVI  113 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC--CSSCEEEECSCTTTCC--CCSEEEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc--ccchhhhccchhhccc--cccceeeE
Confidence            46789999999999999999875  356799999999999999999988765  3467888888887665  45789999


Q ss_pred             ecchhccCC--CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          243 AGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       243 ~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +..+++|++  |+.++|++++++|||||.+++.++..
T Consensus       114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence            999999985  77899999999999999999988664

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=8.8e-19  Score=153.16  Aligned_cols=117  Identities=15%  Similarity=0.204  Sum_probs=101.2

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      .++.+.+.+..+++.+|||||||+|.++..+++.. +++|+|+|+|+.+++.|++++++.+  ...++.+...|....  
T Consensus        40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~--l~~~~~~~~~d~~~~--  114 (280)
T d2fk8a1          40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDF--  114 (280)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGC--
T ss_pred             HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhc--cccchhhhhhhhhhh--
Confidence            35677778888899999999999999999998774 3499999999999999999999887  456788888876654  


Q ss_pred             CCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecc
Q 021344          234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       +++||.|++..+++|+.+.  ..+++++.++|||||++++.+..
T Consensus       115 -~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         115 -AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             -CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             -ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence             4689999999999999765  79999999999999999997644

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=1.3e-18  Score=152.65  Aligned_cols=118  Identities=16%  Similarity=0.140  Sum_probs=102.7

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+...++.+|||||||.|.++..+++.. +++|+|+++|+..++.++++.+..+  ...++.+...|.   ++
T Consensus        49 k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~--l~~~v~~~~~d~---~~  122 (291)
T d1kpia_          49 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGW---EE  122 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSC--CSSCEEEEECCG---GG
T ss_pred             HHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhc--cchhhhhhhhcc---cc
Confidence            35677788899999999999999999999988764 3599999999999999999999887  456788888775   34


Q ss_pred             CCCchhhheecchhccCCCH---------HHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 ASGFVDAVHAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~---------~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .+++||.|++..+++|+.++         ..+++++.++|||||++++.+...
T Consensus       123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred             cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence            57899999999999999873         689999999999999999988764

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.77  E-value=1.2e-18  Score=150.16  Aligned_cols=109  Identities=20%  Similarity=0.241  Sum_probs=93.3

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC-CCCchhhhee
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA  243 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~-~~~~fD~V~~  243 (314)
                      .++.+|||+|||+|..+..+++.+. .+|+|+|+|+.+++.|+++....+  ...++.+.++|+...++ .+++||+|++
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~~~fD~V~~   99 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMDLGKEFDVISS   99 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcC--CCcceEEEEcchhhhcccccccceEEEE
Confidence            3578999999999999999988763 489999999999999999988765  34689999999977665 4678999999


Q ss_pred             cchhccCCCH----HHHHHHHHhhcccCcEEEEEecc
Q 021344          244 GAALHCWPSP----SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       244 ~~vl~h~~d~----~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+++||+.++    ..+++++.++|||||++++.++.
T Consensus       100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         100 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            9999998543    47899999999999999998754

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.77  E-value=6.6e-19  Score=151.20  Aligned_cols=103  Identities=18%  Similarity=0.271  Sum_probs=90.4

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec-
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-  244 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~-  244 (314)
                      ++++|||||||+|.++..+++.+.  +++|+|+|+.|++.|+++....+    .+++++++|+..+++ +++||+|++. 
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~----~~v~~~~~d~~~~~~-~~~fD~i~~~~  109 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISNLNI-NRKFDLITCCL  109 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGGCCC-SCCEEEEEECT
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccC----ccceeeccchhhhcc-cccccccceee
Confidence            467999999999999999999987  99999999999999999988765    589999999988876 4689999975 


Q ss_pred             chhccCCCH---HHHHHHHHhhcccCcEEEEEec
Q 021344          245 AALHCWPSP---SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       245 ~vl~h~~d~---~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++++|+.++   .++|++++++|||||.+++...
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             eeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            688888755   4689999999999999997553

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=4.3e-18  Score=148.81  Aligned_cols=118  Identities=19%  Similarity=0.194  Sum_probs=104.2

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+...++.+|||||||.|.++..+++.. +++|+|+++|+..++.|+++.+..+  ...++++..+|...++ 
T Consensus        50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g--~~~~v~~~~~d~~~~~-  125 (285)
T d1kpga_          50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQFD-  125 (285)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGCC-
T ss_pred             HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhh--hhhhhHHHHhhhhccc-
Confidence            45677888889999999999999999999888775 4699999999999999999998887  5689999999987764 


Q ss_pred             CCCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 ASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                        ++||.|++..+++|+.+  ...+++++.++|||||++++.+...
T Consensus       126 --~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~  169 (285)
T d1kpga_         126 --EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  169 (285)
T ss_dssp             --CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             --ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEec
Confidence              68999999999999964  4899999999999999999977653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.75  E-value=2.3e-18  Score=141.68  Aligned_cols=120  Identities=19%  Similarity=0.207  Sum_probs=105.1

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  228 (314)
                      +..++....+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++++..+  ...+++++++|+
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~g--l~~~v~~~~gda   91 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDA   91 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcC--CCcceEEEECch
Confidence            45566777888889999999999999999999999998765  99999999999999999999987  457999999999


Q ss_pred             CCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      .+.+...+.||.|++....+|   ...+++.+.+.|||||++++...
T Consensus        92 ~~~~~~~~~~D~v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          92 PEALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             HHHHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhcccccCCcCEEEEeCcccc---chHHHHHHHHHhCcCCEEEEEee
Confidence            887777789999999876544   57889999999999999988764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.75  E-value=2.5e-18  Score=141.89  Aligned_cols=118  Identities=15%  Similarity=0.149  Sum_probs=97.7

Q ss_pred             HHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---------CCCCeEEEEecCC
Q 021344          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---------LTSNLALVRADVC  229 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---------~~~~v~~~~~d~~  229 (314)
                      ...+...++.+|||+|||+|..+..|+++|.  +|+|+|+|+.+++.|+++.+..+..         ....+.++.+|+.
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            3446677899999999999999999999987  9999999999999999988653210         1245688999998


Q ss_pred             CCCC-CCCchhhheecchhccCCC--HHHHHHHHHhhcccCcEEEEEecccC
Q 021344          230 RLPF-ASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       230 ~lp~-~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .++. ....||+|++..+++|+.+  ...+++++.++|||||.+++......
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~  142 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD  142 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred             ccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence            8763 3467999999999999975  46899999999999999988776654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=5e-18  Score=146.21  Aligned_cols=132  Identities=16%  Similarity=0.159  Sum_probs=112.5

Q ss_pred             HHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 021344          140 RQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~  218 (314)
                      -..+...........+.++...++..++.+|||+|||+|.++..|++. ++..+|+++|+++++++.|+++++.......
T Consensus        70 ~~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~  149 (264)
T d1i9ga_          70 VMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP  149 (264)
T ss_dssp             HTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC
T ss_pred             HhhccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCC
Confidence            444444444555677788999999999999999999999999999987 7778999999999999999998876422135


Q ss_pred             CCeEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       219 ~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .++.++++|+.+.++++++||.|++     |+++|..++.++.++|||||++++..++
T Consensus       150 ~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~  202 (264)
T d1i9ga_         150 DNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT  202 (264)
T ss_dssp             TTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             ceEEEEecccccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCc
Confidence            7999999999888888999999875     6899999999999999999999988843

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.1e-18  Score=143.69  Aligned_cols=125  Identities=17%  Similarity=0.169  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC--------------CC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--------------IL  217 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------~~  217 (314)
                      ....+.+.+.+...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.+++.|+++......              ..
T Consensus        31 ~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          31 QLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            34456777777877889999999999999999999987  999999999999999987653210              01


Q ss_pred             CCCeEEEEecCCCCC-CCCCchhhheecchhccCC--CHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          218 TSNLALVRADVCRLP-FASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       218 ~~~v~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ..+++++++|+..++ ...+.||+|+...+++|++  +...+++++.++|||||++++.++...
T Consensus       109 ~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~  172 (229)
T d2bzga1         109 SGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD  172 (229)
T ss_dssp             TSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred             CCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC
Confidence            357999999998764 5567899999999999996  346899999999999999988887653

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.73  E-value=1.6e-17  Score=143.21  Aligned_cols=118  Identities=17%  Similarity=0.300  Sum_probs=101.4

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      .+.+.+.++..+.++|||||||+|.++..+++++++.+++++|+ +.+++.+++++...+  ...+++++.+|+.+. . 
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~rv~~~~~D~~~~-~-  143 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFEP-L-  143 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTSC-C-
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh--cccchhhccccchhh-c-
Confidence            34566677777788999999999999999999999899999998 668999999998877  457899999998652 2 


Q ss_pred             CCchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEeccc
Q 021344          235 SGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ..+||+|++.++|||+++..  ++|++++++|||||++++.+...
T Consensus       144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~  188 (253)
T d1tw3a2         144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD  188 (253)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred             ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence            35699999999999998775  78999999999999999987654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.73  E-value=1.6e-17  Score=137.47  Aligned_cols=118  Identities=14%  Similarity=0.194  Sum_probs=101.4

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.++  +|+++|+|+.+++.++++++..++ ...++++..+|+.+ ++
T Consensus        40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l-~~~~i~~~~~d~~~-~~  115 (194)
T d1dusa_          40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNL-DNYDIRVVHSDLYE-NV  115 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTC-TTSCEEEEECSTTT-TC
T ss_pred             HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCC-ccceEEEEEcchhh-hh
Confidence            345677788888899999999999999999999877  999999999999999999988764 23579999999876 56


Q ss_pred             CCCchhhheecchhccCCCH-HHHHHHHHhhcccCcEEEEEec
Q 021344          234 ASGFVDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~-~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++++||+|++..++++..+. ..+++++.++|||||.+++...
T Consensus       116 ~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  158 (194)
T d1dusa_         116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence            68899999999888876654 6789999999999999988663

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.1e-18  Score=146.78  Aligned_cols=111  Identities=7%  Similarity=-0.010  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHh----CC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeE--EEEecCC------C
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKS----GT--YSGVVALDFSENMLRQCYDFIKQDNTILTSNLA--LVRADVC------R  230 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~----~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~--~~~~d~~------~  230 (314)
                      ++..+|||||||+|.++..+++.    ++  ...++|+|+|+.+++.++++++...  ...++.  +...+++      .
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS--NLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC--SCTTEEEEEECSCHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc--ccccccccchhhhhhhhcchhc
Confidence            34457999999999987777553    22  3468999999999999999887643  123343  3333332      1


Q ss_pred             CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .+.++++||+|++.++|||++|+..+|+++.++|||||.+++..+..
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence            24567899999999999999999999999999999999999988653

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=8.5e-17  Score=134.92  Aligned_cols=112  Identities=14%  Similarity=0.173  Sum_probs=97.1

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ....+.+.+..+++.+|||||||+|+++..+++. ++...|+++|+++.+++.|+++++..+   ..++.++.+|..+.+
T Consensus        63 ~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~---~~n~~~~~~d~~~~~  139 (213)
T d1dl5a1          63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCC
T ss_pred             hhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc---ccccccccCchHHcc
Confidence            4456777888999999999999999999999876 556799999999999999999998876   378999999998877


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ..+++||+|++..+++|+++      ++.+.|||||++++..
T Consensus       140 ~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         140 PEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred             ccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence            77789999999999999853      4677899999998854

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.68  E-value=1.8e-16  Score=134.30  Aligned_cols=122  Identities=11%  Similarity=0.074  Sum_probs=101.6

Q ss_pred             HHHHHHHH---HhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 021344          153 EEFKMAQE---YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (314)
Q Consensus       153 ~~~~~l~~---~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  229 (314)
                      +....+..   .++..++.+|||+|||+|.++..+++.+++..|+|+|+|+.+++.++++....     .++..+.+|..
T Consensus        58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~-----~ni~~i~~d~~  132 (230)
T d1g8sa_          58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDAN  132 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTT
T ss_pred             HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh-----cccceEEEeec
Confidence            34444443   45578899999999999999999999988889999999999999999876543     67888888887


Q ss_pred             CCC-CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCC
Q 021344          230 RLP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       230 ~lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                      ..+ +.+..+|++++...++|..++..+++++.+.|||||.+++....+..
T Consensus       133 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~  183 (230)
T d1g8sa_         133 KPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI  183 (230)
T ss_dssp             CGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGT
T ss_pred             cCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeecccc
Confidence            643 55667888888888999999999999999999999999998766543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.5e-17  Score=144.88  Aligned_cols=121  Identities=21%  Similarity=0.258  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~~~v~~~~~d~~~  230 (314)
                      ....+.+.+.+...++.+|||+|||+|.++..|++.+.  +|+|+|+|+.|++.|+++....+.. ......+..+++..
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            44456677777777788999999999999999999976  9999999999999999987765411 00123444555432


Q ss_pred             ----CCCCCCchhhheec-chhccCCCH-------HHHHHHHHhhcccCcEEEEEec
Q 021344          231 ----LPFASGFVDAVHAG-AALHCWPSP-------SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       231 ----lp~~~~~fD~V~~~-~vl~h~~d~-------~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                          +| ..++||+|++. .+++|++++       ..+|+++.++|||||+|++...
T Consensus       120 ~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         120 LDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             HHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence                22 24679999874 589999764       4699999999999999999764

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=8e-17  Score=133.91  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=93.1

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhheec
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG  244 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~~~  244 (314)
                      +..|||||||+|.++..+++..++..++|+|+++.++..|.++++..++   .|+.++.+|+..+.  ++++++|.|++.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l---~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA---QNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC---SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc---cCchhcccchhhhhcccCchhhhccccc
Confidence            4589999999999999999999999999999999999999999998874   79999999998765  778999999988


Q ss_pred             chhccCCCH--------HHHHHHHHhhcccCcEEEEEe
Q 021344          245 AALHCWPSP--------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       245 ~vl~h~~d~--------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +...|....        ..+|+++.++|||||.|++.|
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            776655433        479999999999999999987

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.68  E-value=9.9e-17  Score=137.11  Aligned_cols=114  Identities=20%  Similarity=0.223  Sum_probs=94.4

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      .+..+...++..++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|+++++..+  ...++++..+|+.+. 
T Consensus        73 D~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~--~~~nv~~~~~Di~~~-  149 (250)
T d1yb2a1          73 DASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY--DIGNVRTSRSDIADF-  149 (250)
T ss_dssp             --------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS--CCTTEEEECSCTTTC-
T ss_pred             HHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc--CCCceEEEEeeeecc-
Confidence            4456777889999999999999999999999886 666799999999999999999998865  358999999999875 


Q ss_pred             CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++++.||.|++     ++++|..+++++.++|||||++++..+
T Consensus       150 ~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         150 ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeC
Confidence            45778999885     578999999999999999999998774

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.68  E-value=1.8e-16  Score=136.69  Aligned_cols=117  Identities=14%  Similarity=0.182  Sum_probs=100.1

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      ..+.+.++.....+|||||||+|.++..+++..|+.+++++|+ +.+++.++++++..+  ...++.++.+|+.. +.+ 
T Consensus        71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~--~~~ri~~~~~d~~~-~~p-  145 (256)
T d1qzza2          71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFK-PLP-  145 (256)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCS-
T ss_pred             HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC--Ccceeeeeeeeccc-ccc-
Confidence            3455566666778999999999999999999999999999997 788999999998877  46789999999865 443 


Q ss_pred             CchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEeccc
Q 021344          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .+||+|++.++|||+++..  ++|++++++|||||+++|.+...
T Consensus       146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~  189 (256)
T d1qzza2         146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRAD  189 (256)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEecc
Confidence            4699999999999998764  67999999999999999988643

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.67  E-value=1.2e-16  Score=133.41  Aligned_cols=112  Identities=15%  Similarity=0.106  Sum_probs=94.2

Q ss_pred             HhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhh
Q 021344          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~  240 (314)
                      .+..+++.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.++++.+..     .++.++.+|+...+.....+|.
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~  125 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVEK  125 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCCC
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-----CCceEEEeeccCccccccccce
Confidence            35678899999999999999999999876779999999999999999988764     5899999999886655555555


Q ss_pred             he-ecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          241 VH-AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       241 V~-~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      |. +.+.+.|..++..+++++.++|||||++++....+
T Consensus       126 vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  163 (209)
T d1nt2a_         126 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKAR  163 (209)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             EEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEcc
Confidence            53 33557788888999999999999999999987544

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.1e-17  Score=139.24  Aligned_cols=113  Identities=12%  Similarity=0.183  Sum_probs=92.0

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC--CCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFA  234 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~--lp~~  234 (314)
                      .+.+.+. .++++|||||||+|..+..+++..+ .+++|+|+|+.+++.|+++.+..+    .++.++..++..  .+++
T Consensus        45 ~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~  118 (229)
T d1zx0a1          45 ALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLP  118 (229)
T ss_dssp             HHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSC
T ss_pred             HHHHhhc-cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcc----cccccccccccccccccc
Confidence            3444444 4688999999999999999998763 489999999999999999987754    677888877643  3456


Q ss_pred             CCchhhhe-----ecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          235 SGFVDAVH-----AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       235 ~~~fD~V~-----~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +++||.|+     +..+++|+.++..+++++.|+|||||+|++...
T Consensus       119 ~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~  164 (229)
T d1zx0a1         119 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  164 (229)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             cccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEec
Confidence            77887776     578899999999999999999999999987543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=9.4e-17  Score=137.82  Aligned_cols=102  Identities=19%  Similarity=0.219  Sum_probs=86.8

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++..+    .++.++++|+.. .++.++||+|+++
T Consensus       119 ~~g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~n~----~~~~~~~~d~~~-~~~~~~fD~V~an  191 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNG----VRPRFLEGSLEA-ALPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTT----CCCEEEESCHHH-HGGGCCEEEEEEE
T ss_pred             CccCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHHcC----CceeEEeccccc-cccccccchhhhc
Confidence            4688999999999999999998876  89999999999999999999876    467888988764 3456799999987


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ...++   ...+++++.++|||||+++++...
T Consensus       192 i~~~~---l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         192 LYAEL---HAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             CCHHH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccccc---HHHHHHHHHHhcCCCcEEEEEecc
Confidence            65553   467789999999999999998754

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=1.2e-15  Score=131.85  Aligned_cols=127  Identities=20%  Similarity=0.263  Sum_probs=102.8

Q ss_pred             hcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCC
Q 021344          142 NFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSN  220 (314)
Q Consensus       142 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~  220 (314)
                      .+...........+.++...++..++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|+++++..+  ...+
T Consensus        79 ~~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g--~~~~  156 (266)
T d1o54a_          79 NMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIER  156 (266)
T ss_dssp             TCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGG
T ss_pred             hccCCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc--cccC
Confidence            3333333444567778999999999999999999999999999887 466799999999999999999999877  3468


Q ss_pred             eEEEEecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          221 LALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       221 v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +.+...|+.. .+....||.|     +.|+++|..+++++.++|||||++++..+.
T Consensus       157 v~~~~~d~~~-~~~~~~~D~V-----~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~  206 (266)
T d1o54a_         157 VTIKVRDISE-GFDEKDVDAL-----FLDVPDPWNYIDKCWEALKGGGRFATVCPT  206 (266)
T ss_dssp             EEEECCCGGG-CCSCCSEEEE-----EECCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             cEEEeccccc-cccccceeee-----EecCCCHHHHHHHHHhhcCCCCEEEEEeCc
Confidence            8888888643 3344556665     468899999999999999999999988743

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.62  E-value=2.3e-15  Score=124.95  Aligned_cols=105  Identities=21%  Similarity=0.263  Sum_probs=88.7

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCCCchhhheec
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG  244 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--~~~~~fD~V~~~  244 (314)
                      ...|||||||+|.++..+++..++..++|+|+++.++..|.+++...++   .|+.++.+|+..+.  ++++++|.|++.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l---~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV---PNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc---ccceeeecCHHHHhhhccCCceehhccc
Confidence            4589999999999999999999999999999999999999999988874   79999999998865  667888888765


Q ss_pred             chhccCCCH--------HHHHHHHHhhcccCcEEEEEe
Q 021344          245 AALHCWPSP--------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       245 ~vl~h~~d~--------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +.--+....        ..+|+.+.++|||||.|++.|
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            432211111        578999999999999999987

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.6e-16  Score=137.77  Aligned_cols=124  Identities=13%  Similarity=0.124  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-------CCCCCCCeEEE
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-------NTILTSNLALV  224 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~~~~~~v~~~  224 (314)
                      ......+.+.+...++.+|||+|||+|.++..+++..+..+++|+|+++.+++.|++..+..       +. ...+++++
T Consensus       137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~-~~~~i~~~  215 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLE  215 (328)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTC-CCCCEEEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccc-cCCceEEE
Confidence            34456677788888899999999999999999998876678999999999999998876542       11 23689999


Q ss_pred             EecCCCCCCCCCchhh-heecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          225 RADVCRLPFASGFVDA-VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       225 ~~d~~~lp~~~~~fD~-V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++|+.+.++.+..||. |+..+.+.|.++....|.++.++|||||++++....
T Consensus       216 ~gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         216 RGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             ECCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             ECcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            9999998887766654 444456778888889999999999999999886543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-15  Score=128.73  Aligned_cols=113  Identities=24%  Similarity=0.367  Sum_probs=93.7

Q ss_pred             HHHHHHh--ccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCCCeEEEEecCCC
Q 021344          156 KMAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCR  230 (314)
Q Consensus       156 ~~l~~~l--~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~d~~~  230 (314)
                      ..+.+.+  ..+++.+|||||||+|+.+..+++. ++..+|+++|+++.+++.|+++++..+..  ...++.++.+|...
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            4566666  5678999999999999999888875 55669999999999999999998865421  13578999999988


Q ss_pred             CCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+..++.||+|++..+++++++      ++.+.|||||++++..
T Consensus       144 ~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         144 GYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPV  181 (224)
T ss_dssp             CCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             ccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEE
Confidence            7777889999999999998853      4678999999999865

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.4e-15  Score=130.86  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=103.2

Q ss_pred             HHhcccCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcC----
Q 021344          140 RQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDN----  214 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~----  214 (314)
                      ...+...........+.++...++..+|.+|||+|||+|.++..|++. ++..+|+++|+++.+++.|+++++..+    
T Consensus        72 ~~~~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~  151 (324)
T d2b25a1          72 VVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK  151 (324)
T ss_dssp             HHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred             hhccCCCCcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhh
Confidence            333333333445566778888999999999999999999999999986 677799999999999999999987532    


Q ss_pred             ----CCCCCCeEEEEecCCCCC--CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          215 ----TILTSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       215 ----~~~~~~v~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                          .....++.+..+|+....  +.+..||.|+.     .+++|..++.++.++|||||++++..++
T Consensus       152 ~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~  214 (324)
T d2b25a1         152 LSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVN  214 (324)
T ss_dssp             TTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             hhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCC
Confidence                012468999999987653  34668998875     5788999999999999999999987743

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3e-16  Score=134.95  Aligned_cols=113  Identities=21%  Similarity=0.346  Sum_probs=84.8

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC--------------------------
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT--------------------------  218 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~--------------------------  218 (314)
                      .++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.|+++++.......                          
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            3567899999999998877776652 3799999999999999998876541000                          


Q ss_pred             CCe-EEEEecC----CCCCCCCCchhhheecchhccCC----CHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          219 SNL-ALVRADV----CRLPFASGFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       219 ~~v-~~~~~d~----~~lp~~~~~fD~V~~~~vl~h~~----d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ..+ .....+.    ...++.+++||+|++.+++||+.    ++..+++++.++|||||++++.++...
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~  197 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL  197 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence            000 1111121    22356788999999999999996    456899999999999999999887653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.58  E-value=4.7e-15  Score=124.59  Aligned_cols=107  Identities=16%  Similarity=0.166  Sum_probs=90.8

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      ...+.+.+...++.+|||||||+|+++..+++...  +|+++|+++..++.|++++..     ..++.++.+|.......
T Consensus        59 ~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~-----~~nv~~~~~d~~~g~~~  131 (224)
T d1vbfa_          59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSY-----YNNIKLILGDGTLGYEE  131 (224)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTT-----CSSEEEEESCGGGCCGG
T ss_pred             HHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhc-----ccccccccCchhhcchh
Confidence            34567788899999999999999999999999875  999999999999999998764     36999999998664445


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .++||+|++..+++++++      .+.+.|||||++++..
T Consensus       132 ~~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         132 EKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPI  165 (224)
T ss_dssp             GCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             hhhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEEE
Confidence            678999999999998853      3567899999998853

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.3e-14  Score=129.37  Aligned_cols=110  Identities=18%  Similarity=0.311  Sum_probs=91.3

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCc
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~  237 (314)
                      +.+.....++.+|||||||+|.++..+++.|. .+|+|+|.|+ ++..|++..+..+  ...++.++.+|+.++++++++
T Consensus        30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~~--~~~~i~~i~~~~~~l~~~~~~  105 (328)
T d1g6q1_          30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELNG--FSDKITLLRGKLEDVHLPFPK  105 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSSSC
T ss_pred             HHhccccCCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHhC--ccccceEEEeehhhccCcccc
Confidence            33333444688999999999999999999874 4899999997 6688888888877  467899999999999998999


Q ss_pred             hhhheecch---hccCCCHHHHHHHHHhhcccCcEEE
Q 021344          238 VDAVHAGAA---LHCWPSPSNAVAEISRILRSGGVFV  271 (314)
Q Consensus       238 fD~V~~~~v---l~h~~d~~~~l~~i~r~LkpGG~l~  271 (314)
                      ||+|++..+   +.+......++..+.++|||||+++
T Consensus       106 ~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         106 VDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            999998544   4455667889999999999999985

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=3.4e-14  Score=119.62  Aligned_cols=111  Identities=15%  Similarity=0.178  Sum_probs=91.2

Q ss_pred             HhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCCC
Q 021344          161 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASG  236 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l---p~~~~  236 (314)
                      .+...+|.+|||+|||+|.++.++++. |+..+|+|+|+++.+++.++++++..     .++..+..|....   +....
T Consensus        68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-----~~~~~i~~d~~~~~~~~~~~~  142 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVP  142 (227)
T ss_dssp             CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCC
T ss_pred             ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-----CCceEEEEECCCccccccccc
Confidence            345788999999999999999999987 66779999999999999999987653     5788888888653   23345


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .+|+|++  .+.|..++..+++++.+.|||||++++......
T Consensus       143 ~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~  182 (227)
T d1g8aa_         143 KVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRS  182 (227)
T ss_dssp             CEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             ceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECCc
Confidence            6787765  466777888999999999999999999876553

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=125.46  Aligned_cols=113  Identities=20%  Similarity=0.234  Sum_probs=83.3

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC--------------------------
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT--------------------------  218 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~--------------------------  218 (314)
                      ..+.++||||||+|.+....+... ..+|+|+|+|+.+++.++++++.......                          
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            467899999999997765444333 23899999999999999988765431000                          


Q ss_pred             -CCeEEEEecCCC------CCCCCCchhhheecchhccCC----CHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          219 -SNLALVRADVCR------LPFASGFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       219 -~~v~~~~~d~~~------lp~~~~~fD~V~~~~vl~h~~----d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                       .......+|+..      .+...++||+|++.++|||+.    +...+++++.++|||||+|++.++...
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~  202 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE  202 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence             012334456543      234456899999999999986    457899999999999999999887553

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=3.6e-14  Score=125.81  Aligned_cols=104  Identities=16%  Similarity=0.274  Sum_probs=86.8

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhee
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~  243 (314)
                      ..++++|||||||+|.++..+++.|. .+|+|+|.|+. ...+++..+..+  ...++.++.+|+.+++++.++||+|++
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~-~~~a~~~~~~n~--~~~~v~~~~~~~~~~~~~~~~~D~ivs  106 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSI-SDYAVKIVKANK--LDHVVTIIKGKVEEVELPVEKVDIIIS  106 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTT-HHHHHHHHHHTT--CTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHH-HhhhhhHHHHhC--CccccceEeccHHHcccccceeEEEee
Confidence            34688999999999999999999874 48999999975 466667677666  457899999999999988899999988


Q ss_pred             cchhccC---CCHHHHHHHHHhhcccCcEEE
Q 021344          244 GAALHCW---PSPSNAVAEISRILRSGGVFV  271 (314)
Q Consensus       244 ~~vl~h~---~d~~~~l~~i~r~LkpGG~l~  271 (314)
                      ..+.+++   .....++..+.++|||||.++
T Consensus       107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         107 EWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            6554444   467889999999999999986

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.48  E-value=6.2e-14  Score=116.90  Aligned_cols=111  Identities=14%  Similarity=0.155  Sum_probs=94.4

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      ....+.+.+...++.+|||||||+|+.+..+++.. ..+|+++|.++..++.|+++++..+.   .|+.++.+|......
T Consensus        66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~---~nv~~~~gd~~~g~~  141 (215)
T d1jg1a_          66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGV---KNVHVILGDGSKGFP  141 (215)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGCCG
T ss_pred             hHHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCC---ceeEEEECccccCCc
Confidence            44577888899999999999999999999888762 23799999999999999999999863   899999999977655


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ..+.||.|++..+++++++.      +.+.|||||++++..
T Consensus       142 ~~~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         142 PKAPYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GGCCEEEEEECSBBSSCCHH------HHHTEEEEEEEEEEE
T ss_pred             ccCcceeEEeecccccCCHH------HHHhcCCCCEEEEEE
Confidence            67889999999999987543      456799999998754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=122.35  Aligned_cols=112  Identities=20%  Similarity=0.299  Sum_probs=89.2

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      .+.+.....++++|||||||+|.++..+++.|. .+|+|+|.|+.+.. +++.....+  ...++.++.+|+.+++++++
T Consensus        26 ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~~--~~~~i~~~~~~~~~l~~~~~  101 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLNK--LEDTITLIKGKIEEVHLPVE  101 (311)
T ss_dssp             HHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHTT--CTTTEEEEESCTTTSCCSCS
T ss_pred             HHHhccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHhC--CCccceEEEeeHHHhcCccc
Confidence            344444555788999999999999999999884 48999999998765 555555555  45899999999999998889


Q ss_pred             chhhheecchhccCC---CHHHHHHHHHhhcccCcEEEE
Q 021344          237 FVDAVHAGAALHCWP---SPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~---d~~~~l~~i~r~LkpGG~l~i  272 (314)
                      +||+|++....+++.   .+..++....++|||||+++-
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            999999866555543   345778888899999999873

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=7.6e-13  Score=114.08  Aligned_cols=116  Identities=14%  Similarity=0.172  Sum_probs=92.2

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~  233 (314)
                      .++....... ..+.+|||+|||+|..+..++...++.+|+++|+|+.+++.|+++++..+.   .+++++++|+.. ++
T Consensus        97 lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~---~~v~~~~~d~~~-~~  171 (274)
T d2b3ta1          97 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFS-AL  171 (274)
T ss_dssp             HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTG-GG
T ss_pred             hhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc---ccceeeeccccc-cc
Confidence            3444444443 346789999999999999999999999999999999999999999998873   579999999865 45


Q ss_pred             CCCchhhheec-------------chhccCCC------------HHHHHHHHHhhcccCcEEEEEe
Q 021344          234 ASGFVDAVHAG-------------AALHCWPS------------PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 ~~~~fD~V~~~-------------~vl~h~~d------------~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+++||+|+++             .++.|-+.            ..++++++.+.|+|||.+++..
T Consensus       172 ~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi  237 (274)
T d2b3ta1         172 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  237 (274)
T ss_dssp             TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence            56799999985             12222221            1368889999999999999965

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=5.5e-13  Score=120.80  Aligned_cols=121  Identities=8%  Similarity=0.042  Sum_probs=88.0

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC------CCCCCCeEE-EE
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN------TILTSNLAL-VR  225 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~~~~~v~~-~~  225 (314)
                      ..+..+.+.++.+++.+|||||||+|..+..++...+..+++|+|+++.+++.|+++.+..+      ......+.+ ..
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            45666777788889999999999999999999988655689999999999999999876521      001123333 33


Q ss_pred             ecCCCCCCCC---CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          226 ADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       226 ~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +++...+..+   ..+|+|++. .+.|.++....|+++.+.|||||+++...
T Consensus       283 ~~f~~~~~~d~~~~~adVV~in-n~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         283 KSFVDNNRVAELIPQCDVILVN-NFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEEC-CTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             echhhccccccccccceEEEEe-cccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            4444332211   134556554 45677788899999999999999998765

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.39  E-value=6.7e-13  Score=111.30  Aligned_cols=113  Identities=24%  Similarity=0.345  Sum_probs=88.6

Q ss_pred             HHHHHHh--ccCCCCeEEEEcCcccHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCCCeEEEE
Q 021344          156 KMAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSG------TYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVR  225 (314)
Q Consensus       156 ~~l~~~l--~~~~~~~iLDiGcG~G~~~~~l~~~~------~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~  225 (314)
                      ..+.+.+  ...++.+|||||||+|+++..+++..      ...+|+++|.++..++.|++++......  ...++.++.
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            3556665  56789999999999999988887651      2348999999999999998876542100  125899999


Q ss_pred             ecCCCCCCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       226 ~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +|......+.+.||.|++..+++++++      .+.+.|||||++++..
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPV  190 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             cccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEE
Confidence            998776656778999999999998864      3678999999998854

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=3.8e-13  Score=110.12  Aligned_cols=119  Identities=16%  Similarity=0.260  Sum_probs=97.0

Q ss_pred             HHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--
Q 021344          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (314)
Q Consensus       155 ~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--  232 (314)
                      .+.+.+++.+.+++.+||++||+|..+..+++..++.+|+|+|.++.+++.|+++++..+    .++.++++++.++.  
T Consensus        12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~----~r~~~~~~~f~~~~~~   87 (192)
T d1m6ya2          12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADFL   87 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc----ccccchhHHHhhHHHH
Confidence            345667788889999999999999999999998888899999999999999999988754    78999999987642  


Q ss_pred             ---CCCCchhhheecchh--c-------cCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 ---FASGFVDAVHAGAAL--H-------CWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 ---~~~~~fD~V~~~~vl--~-------h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                         +..++||.|+....+  .       .+......|..+.++|+|||.+++.++..
T Consensus        88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence               345689998875443  1       12233578999999999999999988653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=2.8e-12  Score=109.96  Aligned_cols=105  Identities=16%  Similarity=0.210  Sum_probs=88.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      .++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.++++++.++  ...+++++++|+.+++. .+.||.|++.
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~--l~~~v~~~~~D~~~~~~-~~~~D~Ii~~  181 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG-ENIADRILMG  181 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred             CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhC--CCceEEEEEcchHHhcc-CCCCCEEEEC
Confidence            358899999999999999999887 4599999999999999999999988  35679999999988764 5679999874


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      .    .+....++.++.++||+||++.+.....
T Consensus       182 ~----p~~~~~~l~~a~~~l~~gG~lh~~~~~~  210 (260)
T d2frna1         182 Y----VVRTHEFIPKALSIAKDGAIIHYHNTVP  210 (260)
T ss_dssp             C----CSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             C----CCchHHHHHHHHhhcCCCCEEEEEeccc
Confidence            2    2344567899999999999998766544

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.33  E-value=3.6e-12  Score=108.29  Aligned_cols=109  Identities=18%  Similarity=0.197  Sum_probs=88.0

Q ss_pred             HHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCC
Q 021344          157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~  235 (314)
                      .+.+..+ .....+|||||||+|.++..++++.|+.+++.+|. +..++       ..+  ...+++++.+|+.+ +.+ 
T Consensus        71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~--~~~ri~~~~gd~~~-~~p-  138 (244)
T d1fp1d2          71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAP--PLSGIEHVGGDMFA-SVP-  138 (244)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCC--CCTTEEEEECCTTT-CCC-
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccC--CCCCeEEecCCccc-ccc-
Confidence            4444455 35567999999999999999999999999999998 44433       222  35799999999865 333 


Q ss_pred             CchhhheecchhccCCCHH--HHHHHHHhhcccCcEEEEEecccC
Q 021344          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                       ..|+|++.++||+++|..  .+|+++++.|+|||+++|.+....
T Consensus       139 -~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~  182 (244)
T d1fp1d2         139 -QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP  182 (244)
T ss_dssp             -CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             -cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence             359999999999998765  789999999999999999887654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.27  E-value=1.6e-12  Score=114.95  Aligned_cols=109  Identities=19%  Similarity=0.233  Sum_probs=86.4

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----CCCCCCchh
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVD  239 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----lp~~~~~fD  239 (314)
                      ..++++|||++||+|.++.+++..+.  +|+++|+|+.+++.|+++++..+.   .+++++++|+.+    ++...++||
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g~~--~V~~vD~s~~al~~a~~n~~~ngl---~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALGFR--EVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHHEE--EEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhcCC--cEEeecchHHHHHHHHHHHHHcCC---CCcceeeccHHHHhhhhHhhhcCCC
Confidence            34688999999999999999887654  999999999999999999999874   689999999865    234457899


Q ss_pred             hheecchh---------ccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          240 AVHAGAAL---------HCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       240 ~V~~~~vl---------~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +|++.---         ....+...++..+.++|||||.|++.+.+.
T Consensus       218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            99974211         111122467888999999999999988654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=3.6e-12  Score=112.90  Aligned_cols=110  Identities=16%  Similarity=0.193  Sum_probs=87.3

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC----CCCCCCchhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDA  240 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----lp~~~~~fD~  240 (314)
                      .++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.++++++.+++  ..+++++++|+.+    ++...++||+
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl--~~~~~~~~~d~~~~~~~~~~~~~~fD~  220 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGV--EDRMKFIVGSAFEEMEKLQKKGEKFDI  220 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCC--CccceeeechhhhhhHHHHhccCCCCc
Confidence            3588999999999999999998874 4899999999999999999999883  4689999999754    2334678999


Q ss_pred             heecchhcc---------CCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          241 VHAGAALHC---------WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       241 V~~~~vl~h---------~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      |++.---.-         ..+...++..+.++|||||+|++.+.+.
T Consensus       221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             hhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            997422110         0112457888899999999999988654

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.22  E-value=1.3e-11  Score=97.33  Aligned_cols=108  Identities=18%  Similarity=0.212  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCCCCCchhhheec
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-lp~~~~~fD~V~~~  244 (314)
                      .+.+|||+|||+|.++..++.+|. .+|+++|.++.+++.++++++..+  ...+++++++|+.. ++...++||+|++.
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~--~~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcc--cccchhhhcccccccccccccccceeEec
Confidence            588999999999999999998885 499999999999999999999877  35679999999866 34556789999984


Q ss_pred             chhccCCCHHHHHHHHH--hhcccCcEEEEEeccc
Q 021344          245 AALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLR  277 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~--r~LkpGG~l~i~~~~~  277 (314)
                      --.. -......+..+.  +.|+|||.+++.....
T Consensus        91 PPy~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~  124 (152)
T d2esra1          91 PPYA-KETIVATIEALAAKNLLSEQVMVVCETDKT  124 (152)
T ss_dssp             CSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             hhhc-cchHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence            2110 001134555554  5799999999876443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=1.4e-11  Score=98.93  Aligned_cols=120  Identities=15%  Similarity=0.207  Sum_probs=81.0

Q ss_pred             CchHHHHHHHHHhcc--CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          150 GPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      ..+...+.+..++..  .++.+|||+|||+|.++..++.+|.  +++++|.++.+++.++++++..+.  ..++....+|
T Consensus        23 t~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~~~~~--~~~v~~~~~d   98 (171)
T d1ws6a1          23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVE   98 (171)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHH
T ss_pred             CcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHHhhcc--ccceeeeehh
Confidence            333444444444332  4578999999999999999999886  899999999999999999998772  3444444444


Q ss_pred             CC--CCCCCCCchhhheecchhccCCCHHHHHHHH--HhhcccCcEEEEEec
Q 021344          228 VC--RLPFASGFVDAVHAGAALHCWPSPSNAVAEI--SRILRSGGVFVGTTF  275 (314)
Q Consensus       228 ~~--~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i--~r~LkpGG~l~i~~~  275 (314)
                      ..  ......++||+|++.=-.+ . +....+.++  ..+|+|||++++...
T Consensus        99 ~~~~~~~~~~~~fD~If~DPPY~-~-~~~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1          99 VFLPEAKAQGERFTVAFMAPPYA-M-DLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCTT-S-CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             cccccccccCCccceeEEccccc-c-CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence            31  1123456899999852211 1 222334444  357999999988763

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.16  E-value=6.9e-11  Score=100.24  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=83.1

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      ....+|||||||+|.++..++++.|..++++.|. +..++.+       +  ...+++++.+|+.+ +.+  .+|++++.
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~--~~~rv~~~~gD~f~-~~p--~aD~~~l~  145 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------S--GSNNLTYVGGDMFT-SIP--NADAVLLK  145 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------C--CBTTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------c--ccCceEEEecCccc-CCC--CCcEEEEE
Confidence            3457899999999999999999999999999998 4444332       2  35799999999976 333  57999999


Q ss_pred             chhccCCCHH--HHHHHHHhhcccC---cEEEEEecccC
Q 021344          245 AALHCWPSPS--NAVAEISRILRSG---GVFVGTTFLRY  278 (314)
Q Consensus       245 ~vl~h~~d~~--~~l~~i~r~LkpG---G~l~i~~~~~~  278 (314)
                      ++||+++|..  ++|+++++.|+||   |++++.+..-.
T Consensus       146 ~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~  184 (244)
T d1fp2a2         146 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID  184 (244)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             eecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecC
Confidence            9999999875  7899999999998   77888775543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.13  E-value=1.4e-10  Score=94.78  Aligned_cols=110  Identities=12%  Similarity=0.130  Sum_probs=75.6

Q ss_pred             CCCCeEEEEcCcccHHH----HHHHHh----CCCCeEEEEeCCHHHHHHHHHHH------------------HhcCCC--
Q 021344          165 AQGGLLVDVSCGSGLFS----RKFAKS----GTYSGVVALDFSENMLRQCYDFI------------------KQDNTI--  216 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~----~~l~~~----~~~~~v~giD~s~~~~~~a~~~~------------------~~~~~~--  216 (314)
                      .+..+|+++|||+|.-.    ..+.+.    ....+++|+|+++.+++.|++..                  ...+..  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            34568999999999843    333332    22347999999999999997321                  110000  


Q ss_pred             --------CCCCeEEEEecCCCC-CCCCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEe
Q 021344          217 --------LTSNLALVRADVCRL-PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       217 --------~~~~v~~~~~d~~~l-p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~  274 (314)
                              ....+.+...+.... +...+.||+|+|.+||.+++++  .++++++++.|+|||+|++-.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~  171 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  171 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence                    001244555555432 2335789999999999999877  489999999999999988743

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=4.8e-11  Score=99.21  Aligned_cols=122  Identities=12%  Similarity=0.242  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .+.-+.+...+...+..+|||||||+|..+..+++.. .+.+++++|+++.+.+.|+++++..+  ...+++++.+|..+
T Consensus        42 ~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g--l~~~i~l~~Gd~~e  119 (214)
T d2cl5a1          42 DAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG--LQDKVTILNGASQD  119 (214)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC--CCccceeeeccccc
Confidence            3444455555666667899999999999999999863 35699999999999999999999887  45789999999865


Q ss_pred             C-C-----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          231 L-P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       231 l-p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      . +     +..++||+|+..+.-+.. .....+.+..++|||||++++-...
T Consensus       120 ~l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~Ddvl  170 (214)
T d2cl5a1         120 LIPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLADNVI  170 (214)
T ss_dssp             HGGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEESCCC
T ss_pred             cccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEEeCcC
Confidence            2 2     334679999976432111 1223577778899999987764433

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.09  E-value=1.3e-10  Score=94.87  Aligned_cols=70  Identities=19%  Similarity=0.283  Sum_probs=59.8

Q ss_pred             ccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhhe
Q 021344          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (314)
Q Consensus       163 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~  242 (314)
                      ..-.|++|||+|||+|.++..++..+. .+|+|+|+++.+++.|+++.        .++.++++|+.+++   ++||+|+
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~--------~~~~~~~~D~~~l~---~~fD~Vi  112 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTWI  112 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHcc--------ccccEEEEehhhcC---CcceEEE
Confidence            334688999999999999988888874 48999999999999999864        56899999998764   6799999


Q ss_pred             ec
Q 021344          243 AG  244 (314)
Q Consensus       243 ~~  244 (314)
                      ++
T Consensus       113 ~N  114 (197)
T d1ne2a_         113 MN  114 (197)
T ss_dssp             EC
T ss_pred             eC
Confidence            86

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.08  E-value=1.5e-10  Score=98.24  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecc
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~  245 (314)
                      ...+|||||||+|.++..++++.|+.+++++|..+ .++.++         ...++.++.+|+.+ +.+.  .|+++..+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~---------~~~r~~~~~~d~~~-~~P~--ad~~~l~~  147 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP---------SYPGVEHVGGDMFV-SIPK--ADAVFMKW  147 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC---------CCTTEEEEECCTTT-CCCC--CSCEECSS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc---------cCCceEEecccccc-cCCC--cceEEEEE
Confidence            35789999999999999999999999999999854 332222         35789999999865 3333  57888899


Q ss_pred             hhccCCCH--HHHHHHHHhhcccCcEEEEEecccC
Q 021344          246 ALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       246 vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ++|++++.  ..+|+++++.|+|||++++.+....
T Consensus       148 vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~  182 (243)
T d1kyza2         148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILP  182 (243)
T ss_dssp             SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEEC
T ss_pred             EeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEec
Confidence            99999865  4789999999999999999876543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.08  E-value=7.3e-11  Score=103.84  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC----CCCCCchhhh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDAV  241 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l----p~~~~~fD~V  241 (314)
                      ++.+|||+.||+|.++..++..+. .+|+++|+|+.+++.++++++.+++ ...+++++++|+.+.    .-..++||+|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l-~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHL-DMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTC-CCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhcc-cCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            488999999999999998887663 4899999999999999999998874 235899999998542    2235689999


Q ss_pred             eecch-----hccCC----CHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          242 HAGAA-----LHCWP----SPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       242 ~~~~v-----l~h~~----d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ++.--     -..+.    +...+++.+.++|+|||+|++++.+.
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            97411     01111    23468888999999999999988653

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2e-10  Score=95.64  Aligned_cols=121  Identities=16%  Similarity=0.104  Sum_probs=95.9

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  230 (314)
                      .+.-.++..+....+.++|||||||+|+.+..+++.-+ +.+++.+|.++...+.|++.++..+  ...+++++.+|+.+
T Consensus        45 ~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag--~~~~i~~~~Gda~e  122 (219)
T d2avda1          45 CEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALE  122 (219)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC--ccceEEEEEeehhh
Confidence            34455555566666778999999999999999998743 6799999999999999999999988  46789999999754


Q ss_pred             -CC-----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          231 -LP-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       231 -lp-----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       ++     ...++||+|+..+--   .+-...+..+.++|+|||++++-....
T Consensus       123 ~l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l~  172 (219)
T d2avda1         123 TLDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVLW  172 (219)
T ss_dssp             HHHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             cchhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence             21     235689999986432   234567889999999999999977654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=2.9e-10  Score=93.47  Aligned_cols=77  Identities=16%  Similarity=0.289  Sum_probs=64.9

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhh
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V  241 (314)
                      ...-.|.+|||+|||+|.++..++..+. .+|+|+|+++.+++.++++++..+    .+..++.+|+..+   +++||+|
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~----~~~~~~~~d~~~~---~~~fD~V  113 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFK----GKFKVFIGDVSEF---NSRVDIV  113 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGT----TSEEEEESCGGGC---CCCCSEE
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcC----CCceEEECchhhh---CCcCcEE
Confidence            3444688999999999999999888874 489999999999999999988765    6889999998765   4679999


Q ss_pred             eecch
Q 021344          242 HAGAA  246 (314)
Q Consensus       242 ~~~~v  246 (314)
                      +++--
T Consensus       114 i~nPP  118 (201)
T d1wy7a1         114 IMNPP  118 (201)
T ss_dssp             EECCC
T ss_pred             EEcCc
Confidence            98643

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.06  E-value=1.3e-10  Score=101.12  Aligned_cols=118  Identities=10%  Similarity=0.001  Sum_probs=86.4

Q ss_pred             HHHHHHhc-cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---
Q 021344          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---  231 (314)
Q Consensus       156 ~~l~~~l~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l---  231 (314)
                      +.+.+.+. ..++.+|||+.||+|.++..++..|.  +|++||.|+.+++.|+++++.+++ ...+++++++|+.+.   
T Consensus       121 ~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln~~-~~~~~~~i~~D~~~~l~~  197 (309)
T d2igta1         121 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGL-EQAPIRWICEDAMKFIQR  197 (309)
T ss_dssp             HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTC-TTSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhhcc-cCCcEEEEeCCHHHhHHH
Confidence            34444433 34578999999999999999998876  899999999999999999988764 234799999998653   


Q ss_pred             -CCCCCchhhheec---chhc------cC-CCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          232 -PFASGFVDAVHAG---AALH------CW-PSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 -p~~~~~fD~V~~~---~vl~------h~-~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       ....++||+|++.   +...      .+ .+...+++.+.++|+|||.+++.+.+
T Consensus       198 ~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         198 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence             1235689999973   1110      01 12245677788999999987766644

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=7.6e-10  Score=94.73  Aligned_cols=120  Identities=15%  Similarity=0.151  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      +..++.+.+........++||+|||+|..+..+++. ++.+|+++|+|+.+++.|+++++..+  ...++.+..+|+...
T Consensus        96 E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~~~--~~~~~~i~~~~~~~~  172 (271)
T d1nv8a_          96 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEFLEP  172 (271)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESSTTGG
T ss_pred             hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHHcC--CCceeEEeecccccc
Confidence            344556666665556678999999999999888865 57899999999999999999999987  456788888888653


Q ss_pred             -CCCCCchhhheecch----hccC-----CCHH----------HHHHH-HHhhcccCcEEEEEe
Q 021344          232 -PFASGFVDAVHAGAA----LHCW-----PSPS----------NAVAE-ISRILRSGGVFVGTT  274 (314)
Q Consensus       232 -p~~~~~fD~V~~~~v----l~h~-----~d~~----------~~l~~-i~r~LkpGG~l~i~~  274 (314)
                       +...++||+|+++=-    -+.+     .+|.          .++++ +.+.|+|||++++..
T Consensus       173 ~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei  236 (271)
T d1nv8a_         173 FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  236 (271)
T ss_dssp             GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             cccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence             233468999998510    0111     1222          22323 557899999998876

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=5.8e-10  Score=90.32  Aligned_cols=124  Identities=10%  Similarity=0.113  Sum_probs=90.8

Q ss_pred             CCchHHHHHHHHHhcc-CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      |..+...+.+...+.. -.+.+|||++||+|.++.+++.+|. ..|+.+|.+..+++.++++++..+   ..++.++.+|
T Consensus        25 Pt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~---~~~~~ii~~d  100 (183)
T d2fpoa1          25 PTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSN  100 (183)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSC
T ss_pred             cCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhcc---ccceeeeeec
Confidence            3344444455554432 3578999999999999999999985 489999999999999999998765   3688999999


Q ss_pred             CCC-CCCCCCchhhheecchhccCCCHHHHHHHHHh--hcccCcEEEEEeccc
Q 021344          228 VCR-LPFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR  277 (314)
Q Consensus       228 ~~~-lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r--~LkpGG~l~i~~~~~  277 (314)
                      +.. +.....+||+|++.=-.. .......+..+.+  .|+++|++++.....
T Consensus       101 ~~~~l~~~~~~fDlIf~DPPY~-~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~  152 (183)
T d2fpoa1         101 AMSFLAQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVESEVE  152 (183)
T ss_dssp             HHHHHSSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             ccccccccccccCEEEEcCccc-cchHHHHHHHHHHCCCCCCCeEEEEEecCc
Confidence            754 333467899999853322 1234566666654  699999999976543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.99  E-value=8.7e-10  Score=89.11  Aligned_cols=124  Identities=15%  Similarity=0.141  Sum_probs=94.0

Q ss_pred             CCchHHHHHHHHHhcc-CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      |..+...+.+...+.. .++.+|||++||+|.++..++.+|. ..|+++|.++.+++.++++++..+  ...+++++++|
T Consensus        23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~--~~~~~~i~~~D   99 (182)
T d2fhpa1          23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMD   99 (182)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESC
T ss_pred             cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhh--ccccccccccc
Confidence            4555566667666653 4688999999999999999999985 489999999999999999998766  34689999999


Q ss_pred             CCCC----CCCCCchhhheecchhccCCCHHHHHHHHHh--hcccCcEEEEEecc
Q 021344          228 VCRL----PFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL  276 (314)
Q Consensus       228 ~~~l----p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r--~LkpGG~l~i~~~~  276 (314)
                      +.+.    .....+||+|++.=-. +..+....+..+..  .|++||++++....
T Consensus       100 ~~~~l~~~~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         100 ANRALEQFYEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             chhhhhhhcccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            8642    1234579999985321 12334567777754  69999999887643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.92  E-value=1.4e-09  Score=90.78  Aligned_cols=120  Identities=13%  Similarity=0.107  Sum_probs=94.2

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      +.-+++..++...+.++|||||+++|+.+..+++..+ +.+++.+|.++...+.|++.++..+  ...+++++.+++.+.
T Consensus        46 ~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g--~~~~i~~~~g~a~~~  123 (227)
T d1susa1          46 DEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPV  123 (227)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc--cccceeeeehHHHHH
Confidence            3444555555555678999999999999999997643 6799999999999999999999987  457899999998542


Q ss_pred             -C------CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          232 -P------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       232 -p------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       +      ...++||+|+...-=   .+-...++.+.++|+|||++++-....
T Consensus       124 L~~l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~DNvl~  173 (227)
T d1susa1         124 LDEMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNTLW  173 (227)
T ss_dssp             HHHHHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEETTTG
T ss_pred             HHHHHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEccCCC
Confidence             2      125689999986432   344678899999999999999976543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.88  E-value=1.7e-09  Score=93.01  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=82.5

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-------CCCCCeEEEEecCCCCCCCCC
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVRADVCRLPFASG  236 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------~~~~~v~~~~~d~~~lp~~~~  236 (314)
                      ..+..+||.||+|.|..+..+.+.. ..+++++|+++.+++.|++.+.....       ....+++++.+|+...--.++
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCceEEEecCCchHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            3457899999999999999998765 45899999999999999987643210       024789999999864322357


Q ss_pred             chhhheecchhccCCCH-----HHHHHHHHhhcccCcEEEEEec
Q 021344          237 FVDAVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~-----~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +||+|+.... .....+     ..+++.+.+.|+|||++++...
T Consensus       149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence            8999997432 222112     4789999999999999988763

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.4e-08  Score=86.05  Aligned_cols=78  Identities=12%  Similarity=0.046  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC------CCCCchh
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FASGFVD  239 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp------~~~~~fD  239 (314)
                      +..++||+|||+|.....++.+.++.+++|+|+++.+++.|+++++..+  ...++.++..+....-      ..+++||
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~--l~~~~~~~~~~~~~~~~~~~~~~~~~~fD  138 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEIIYD  138 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhC--CCcceeeeeeccHHhhhhhhhhcccCcee
Confidence            4568999999999999999988777899999999999999999999987  4678888887654321      2356899


Q ss_pred             hheecc
Q 021344          240 AVHAGA  245 (314)
Q Consensus       240 ~V~~~~  245 (314)
                      +|+|+=
T Consensus       139 ~ivsNP  144 (250)
T d2h00a1         139 FCMCNP  144 (250)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999963

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=3.6e-09  Score=91.53  Aligned_cols=111  Identities=13%  Similarity=0.098  Sum_probs=84.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCCCeEEEEecCCC-CCCCCCchhhhe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCR-LPFASGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~v~~~~~d~~~-lp~~~~~fD~V~  242 (314)
                      ...++||-||.|.|..++.+.+..+..+++++|+++.+++.+++.+.... .....+++++.+|+.. +.-.+++||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            34679999999999999999998766799999999999999999765421 0124789999999854 223356899999


Q ss_pred             ecchhccC-C----CHHHHHHHHHhhcccCcEEEEEec
Q 021344          243 AGAALHCW-P----SPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       243 ~~~vl~h~-~----d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +...-... +    -...+++.+.+.|+|||++++...
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~  205 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  205 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence            75321111 1    124789999999999999988763

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.81  E-value=6e-09  Score=87.37  Aligned_cols=84  Identities=10%  Similarity=0.241  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ...++.+.+.+...++++|||||||+|.++..+++.+.  +++++|+++.+++.++++...     ..++.++.+|+.+.
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~-----~~n~~i~~~D~l~~   79 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQF   79 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGC
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhc-----ccchhhhhhhhhhc
Confidence            44567788888888899999999999999999999876  999999999999999987654     36899999999887


Q ss_pred             CCCCCchhhhe
Q 021344          232 PFASGFVDAVH  242 (314)
Q Consensus       232 p~~~~~fD~V~  242 (314)
                      +++......|+
T Consensus        80 ~~~~~~~~~vv   90 (235)
T d1qama_          80 KFPKNQSYKIF   90 (235)
T ss_dssp             CCCSSCCCEEE
T ss_pred             cccccccceee
Confidence            76544333333

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.81  E-value=4.4e-09  Score=91.95  Aligned_cols=112  Identities=16%  Similarity=0.071  Sum_probs=84.8

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCCCeEEEEecCCCC-CCCCCchhh
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDA  240 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~v~~~~~d~~~l-p~~~~~fD~  240 (314)
                      ....++||.||.|.|..+..+.+..+..+++++|+++.+++.+++.+...  +.....+++++.+|+... .-.+++||+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            34577999999999999999998876779999999999999999987431  111347899999998652 233568999


Q ss_pred             heecchhccC-CC------HHHHHHHHHhhcccCcEEEEEec
Q 021344          241 VHAGAALHCW-PS------PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       241 V~~~~vl~h~-~d------~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      |++...=.+. ..      -..+++.+.+.|+|||++++...
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence            9964321010 11      14789999999999999988663

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=2e-08  Score=82.34  Aligned_cols=102  Identities=21%  Similarity=0.178  Sum_probs=89.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      -++.+++|+|+|.|.-+..++-..|+.+++.+|.+..-+...++....-++   .++++++..+++... +.+||+|++.
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~~~~-~~~fD~V~sR  139 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL---ENIEPVQSRVEEFPS-EPPFDGVISR  139 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC---SSEEEEECCTTTSCC-CSCEEEEECS
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC---cceeeeccchhhhcc-ccccceehhh
Confidence            356799999999999999999888889999999999999999998888763   689999999988653 4579999987


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+    .+...++.-+...+++||.+++.-
T Consensus       140 A~----~~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         140 AF----ASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             CS----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hh----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence            65    567889999999999999998876

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.80  E-value=7.3e-09  Score=91.37  Aligned_cols=141  Identities=11%  Similarity=0.053  Sum_probs=96.8

Q ss_pred             CCCchHHHHHHHH----HhccCCCCeEEEEcCcccHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 021344          148 FPGPDEEFKMAQE----YFKSAQGGLLVDVSCGSGLFSRKFAKS-----GTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (314)
Q Consensus       148 ~~~~~~~~~~l~~----~l~~~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~  218 (314)
                      +.++....+.+..    ++...++.+|||.|||+|.++..+..+     ....+++|+|+++.+++.|+.++...+    
T Consensus        95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~----  170 (328)
T d2f8la1          95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR----  170 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT----
T ss_pred             EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh----
Confidence            4456655544443    345566788999999999999888653     233479999999999999998887765    


Q ss_pred             CCeEEEEecCCCCCCCCCchhhheecchhccCCC------------------HHHHHHHHHhhcccCcEEEEEecccCCC
Q 021344          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPS------------------PSNAVAEISRILRSGGVFVGTTFLRYTS  280 (314)
Q Consensus       219 ~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d------------------~~~~l~~i~r~LkpGG~l~i~~~~~~~~  280 (314)
                      .+..+..+|..... ..++||+|+++--+.....                  ...++..+.+.|+|||++++..+...-.
T Consensus       171 ~~~~~~~~d~~~~~-~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~  249 (328)
T d2f8la1         171 QKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFG  249 (328)
T ss_dssp             CCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGG
T ss_pred             hhhhhhcccccccc-ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCcccc
Confidence            66778888865433 3568999999743321111                  1247999999999999998888654211


Q ss_pred             CCccchHHHHHHHHh
Q 021344          281 STSLTGRVLREVMLI  295 (314)
Q Consensus       281 ~~~~~~~~l~~~~~~  295 (314)
                        .-....+++.+..
T Consensus       250 --~~~~~~lR~~L~~  262 (328)
T d2f8la1         250 --TSDFAKVDKFIKK  262 (328)
T ss_dssp             --STTHHHHHHHHHH
T ss_pred             --CchhHHHHHHHHh
Confidence              1123445555543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.78  E-value=8.1e-09  Score=85.52  Aligned_cols=133  Identities=19%  Similarity=0.240  Sum_probs=93.8

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      +++....+++.+.+...++.+|||.|||+|.++..+.+. .....++|+|+++..+..            .....++.+|
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~------------~~~~~~~~~~   69 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL------------PPWAEGILAD   69 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC------------CTTEEEEESC
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh------------cccceeeeee
Confidence            457778889999999889999999999999999888765 334579999999865432            2446777888


Q ss_pred             CCCCCCCCCchhhheecchhccCC----------------------------C-HHHHHHHHHhhcccCcEEEEEecccC
Q 021344          228 VCRLPFASGFVDAVHAGAALHCWP----------------------------S-PSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~----------------------------d-~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      ..... ...+||+|+++-......                            + ...++....+.||+||++.+..+...
T Consensus        70 ~~~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~  148 (223)
T d2ih2a1          70 FLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATW  148 (223)
T ss_dssp             GGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             hhccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeee
Confidence            75544 346799998864432110                            0 13567888999999999999886543


Q ss_pred             CCCCccchHHHHHHHHhh
Q 021344          279 TSSTSLTGRVLREVMLIR  296 (314)
Q Consensus       279 ~~~~~~~~~~l~~~~~~~  296 (314)
                      -.  .-..+.+++++...
T Consensus       149 l~--~~~~~~lR~~l~~~  164 (223)
T d2ih2a1         149 LV--LEDFALLREFLARE  164 (223)
T ss_dssp             GT--CGGGHHHHHHHHHH
T ss_pred             cc--CcchHHHHHHHHhc
Confidence            21  12245666666544

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.74  E-value=8.6e-09  Score=89.52  Aligned_cols=110  Identities=13%  Similarity=0.134  Sum_probs=82.0

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCC-CCCCCchhhhe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~~l-p~~~~~fD~V~  242 (314)
                      ...++||-||.|.|..++.+.+..+..+++.+|+++.+++.+++.+..... ....+++++.+|+... .-..++||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            456799999999999999999987666999999999999999998754221 1347899999998542 22356899999


Q ss_pred             ecchhccCC----CHHHHHHHHHhhcccCcEEEEEe
Q 021344          243 AGAALHCWP----SPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       243 ~~~vl~h~~----d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ....-..-+    --..+++.+++.|+|||+++...
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            753211100    11468999999999999999876

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.73  E-value=2e-08  Score=86.02  Aligned_cols=109  Identities=15%  Similarity=0.190  Sum_probs=84.3

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCCeEEEEecCCC-CCCCCCchhhhe
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCR-LPFASGFVDAVH  242 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~~d~~~-lp~~~~~fD~V~  242 (314)
                      .+..+||-||.|.|..++.+.+..+..+++.+|+++..++.|++.+... +.....+++++.+|+.. +.-.+++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            4567999999999999999998866679999999999999999976431 11135789999999854 223356899999


Q ss_pred             ecchhccCCC-----HHHHHHHHHhhcccCcEEEEEe
Q 021344          243 AGAALHCWPS-----PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       243 ~~~vl~h~~d-----~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .... +....     -..+++.+.+.|+|||+++...
T Consensus       154 ~D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         154 VDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             ESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            7532 11111     2478999999999999999876

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.70  E-value=6.9e-08  Score=77.72  Aligned_cols=126  Identities=13%  Similarity=0.134  Sum_probs=87.0

Q ss_pred             CCchHHHHHHHHHhcc-CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 021344          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  227 (314)
                      |..+...+.+...+.. -.+.+|||+-||+|.++.+++.+|. ..|+.||.+..+++..+++++..+. ......+...|
T Consensus        25 Pt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~-~~~~~~~~~~d  102 (183)
T d2ifta1          25 PTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKC-SSEQAEVINQS  102 (183)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC-CTTTEEEECSC
T ss_pred             cCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcc-ccccccccccc
Confidence            3344444555555532 2577999999999999999999995 5999999999999999999987652 12346666665


Q ss_pred             CC---CCCCCCCchhhheecchhccCCCHHHHHHHHHh--hcccCcEEEEEeccc
Q 021344          228 VC---RLPFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR  277 (314)
Q Consensus       228 ~~---~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r--~LkpGG~l~i~~~~~  277 (314)
                      ..   .......+||+|++.=-... ......+..+..  .|+++|++++.....
T Consensus       103 ~~~~l~~~~~~~~fDlIFlDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~~~  156 (183)
T d2ifta1         103 SLDFLKQPQNQPHFDVVFLDPPFHF-NLAEQAISLLCENNWLKPNALIYVETEKD  156 (183)
T ss_dssp             HHHHTTSCCSSCCEEEEEECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             ccccccccccCCcccEEEechhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence            42   22334557999998532211 223466776654  799999999987544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.8e-08  Score=86.69  Aligned_cols=112  Identities=14%  Similarity=0.147  Sum_probs=84.1

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCCeEEEEecCCC-CCCCCCchhhh
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCR-LPFASGFVDAV  241 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~v~~~~~d~~~-lp~~~~~fD~V  241 (314)
                      ....++||-||.|.|..++.+.+..+..+++.+|+++.+++.|++.+... +.....+++++.+|+.. +.-..++||+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            34567999999999999999998866679999999999999999976431 11135799999999754 22235689999


Q ss_pred             eecchhccCCCH-----HHHHHHHHhhcccCcEEEEEecc
Q 021344          242 HAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       242 ~~~~vl~h~~d~-----~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ++... +-...+     ..+++.+++.|+|||++++...+
T Consensus       156 i~D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         156 ITDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EEECC------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEcCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            97532 111111     36899999999999999987644

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.68  E-value=1.9e-08  Score=80.83  Aligned_cols=113  Identities=20%  Similarity=0.335  Sum_probs=87.5

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---  232 (314)
                      +.+.+.+.+.+++.++|..+|.|..+..+.+...  +|+|+|.++.++..+++.       ...++.++++++.++.   
T Consensus         8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~--~viaiD~D~~ai~~a~~~-------~~~~~~~~~~~f~~~~~~l   78 (182)
T d1wg8a2           8 QEALDLLAVRPGGVYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGL-------HLPGLTVVQGNFRHLKRHL   78 (182)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHT-------CCTTEEEEESCGGGHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC--cEEEEhhhhhHHHHHhhc-------cccceeEeehHHHHHHHHH
Confidence            3455677788999999999999999999998754  999999999999998874       2368999999987643   


Q ss_pred             --CCCCchhhheecchh--ccCCCH-------HHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 --FASGFVDAVHAGAAL--HCWPSP-------SNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 --~~~~~fD~V~~~~vl--~h~~d~-------~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                        ...+.+|.|++...+  .++.++       ...|......|++||.+++.++..
T Consensus        79 ~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          79 AALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             HHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence              234678988874432  222232       356888899999999999999653

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=5.7e-08  Score=86.51  Aligned_cols=114  Identities=15%  Similarity=0.223  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      +.+.+.+.+++...++.+|||+-||+|.++..|++.+.  +|+|+|.++.+++.|+++++..++   .++.++.+|.++.
T Consensus       198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~i---~n~~~~~~~~~~~  272 (358)
T d1uwva2         198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGL---QNVTFYHENLEED  272 (358)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCTTSC
T ss_pred             hHHHHHHHHhhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhccc---ccceeeecchhhh
Confidence            44566777788877888999999999999999999876  999999999999999999998874   8999999998653


Q ss_pred             ----CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          232 ----PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       232 ----p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                          +....++|+|+..=-=.-   ..+.++.+.+. +|.-+++++.
T Consensus       273 ~~~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYVSC  315 (358)
T d1uwva2         273 VTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYVSC  315 (358)
T ss_dssp             CSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEEES
T ss_pred             hhhhhhhhccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEEeC
Confidence                233467899887310000   02456666653 6777777765

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.65  E-value=3.6e-08  Score=85.04  Aligned_cols=111  Identities=17%  Similarity=0.185  Sum_probs=84.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCCCeEEEEecCCCC--CCCCCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL--PFASGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~v~~~~~d~~~l--p~~~~~fD~V  241 (314)
                      ...++||-||.|.|..++.+.+..+..+++++|+++.+++.+++.+.... .....+++++.+|....  ...+++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            35679999999999999999998766799999999999999999764311 01357899999997542  1235689999


Q ss_pred             eecchhccCCC-----HHHHHHHHHhhcccCcEEEEEecc
Q 021344          242 HAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       242 ~~~~vl~h~~d-----~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +.... .-...     ...+++.+++.|+|||++++...+
T Consensus       159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            97432 11111     147899999999999999998743

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.63  E-value=2.3e-08  Score=83.51  Aligned_cols=103  Identities=17%  Similarity=0.091  Sum_probs=86.7

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---CCCchhhh
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAV  241 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---~~~~fD~V  241 (314)
                      ....+++|||+|.|.-+..++-..++.+++.+|-+..-+...+.....-++   .++.++...++.+..   ..++||+|
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L---~n~~i~~~R~E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC---CCcEEEeehhhhccccccccccceEE
Confidence            356789999999999998888888888999999999999988888777764   789999888765432   13579999


Q ss_pred             eecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ++..+    .....++.-....+++||.+++.-
T Consensus       146 ~sRAv----a~l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         146 TARAV----ARLSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             EEECC----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEhhh----hCHHHHHHHHhhhcccCCEEEEEC
Confidence            99765    678899999999999999998877

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.54  E-value=1.7e-09  Score=91.32  Aligned_cols=92  Identities=11%  Similarity=0.244  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ..++.+.+.+...++.+|||||||+|.++..+++.+.  +|+++|+++.+++.+++++..     ..+++++.+|+.+++
T Consensus        16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~-----~~n~~ii~~D~l~~~   88 (245)
T d1yuba_          16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQ   88 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTT
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhh-----ccchhhhhhhhhccc
Confidence            4556788888888899999999999999999999976  999999999998888765542     368999999999988


Q ss_pred             CCCCchhhheecchhccCCC
Q 021344          233 FASGFVDAVHAGAALHCWPS  252 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d  252 (314)
                      ++...++.|+++-- .|+..
T Consensus        89 ~~~~~~~~vv~NLP-Y~Ist  107 (245)
T d1yuba_          89 FPNKQRYKIVGNIP-YHLST  107 (245)
T ss_dssp             CCCSSEEEEEEECC-SSSCH
T ss_pred             cccceeeeEeeeee-hhhhH
Confidence            87766666665433 34443

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.52  E-value=2e-07  Score=81.30  Aligned_cols=127  Identities=16%  Similarity=0.153  Sum_probs=95.8

Q ss_pred             HHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       154 ~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ...+....+...++.+|||+.+|.|.=+..++... ....++++|.++..+...+++++..+.   .++.....|...++
T Consensus       104 aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~---~~i~~~~~d~~~~~  180 (313)
T d1ixka_         104 SSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHIG  180 (313)
T ss_dssp             HHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGGG
T ss_pred             cccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh---hccccccccccccc
Confidence            34455566778899999999999999877777653 345899999999999999999988763   77888888877776


Q ss_pred             CCCCchhhheec------chhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccCCCCCc
Q 021344          233 FASGFVDAVHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTS  283 (314)
Q Consensus       233 ~~~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~  283 (314)
                      ..++.||.|++.      +++..-++.                ..+|.+..+.|||||+++-+|-+-.+..+.
T Consensus       181 ~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE  253 (313)
T d1ixka_         181 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENE  253 (313)
T ss_dssp             GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTH
T ss_pred             cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHH
Confidence            667789999862      333332221                257889999999999999998776655443

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.49  E-value=3.8e-07  Score=82.99  Aligned_cols=164  Identities=15%  Similarity=0.134  Sum_probs=111.7

Q ss_pred             hhhHHHHHHhHHHhcc-----cCCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCC-------------C
Q 021344          129 PFVSFLYERGWRQNFN-----RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-------------Y  190 (314)
Q Consensus       129 ~~~s~~~~~~w~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~-------------~  190 (314)
                      +.....|+...++...     .+.++++...++.+.+.+.+.++.+|+|..||+|.++..+.++..             .
T Consensus       120 d~~g~~yE~ll~~~~~~~~k~~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~  199 (425)
T d2okca1         120 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  199 (425)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhccchhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhh
Confidence            4445556555443221     133788999999999999988889999999999999988766421             1


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecchhccC----------------CC-H
Q 021344          191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW----------------PS-P  253 (314)
Q Consensus       191 ~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~vl~h~----------------~d-~  253 (314)
                      ..++|+|+++.....|+-++.-++. ......+..+|....+ ...+||+|+++=-+...                .+ -
T Consensus       200 ~~l~g~E~~~~~~~la~~n~~l~g~-~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~  277 (425)
T d2okca1         200 KALHGVDNTPLVVTLASMNLYLHGI-GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQ  277 (425)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTC-CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHH
T ss_pred             hhhhhhhccHHHHHHHHhhhhhcCC-ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHH
Confidence            2599999999999999987776653 2234567778876543 35689999986333111                01 1


Q ss_pred             HHHHHHHHhhcccCcEEEEEecccCCCCCccchHHHHHHHHh
Q 021344          254 SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREVMLI  295 (314)
Q Consensus       254 ~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~~~~~~l~~~~~~  295 (314)
                      ..++..+.+.|++||++.+..+...-.. .-....+++++..
T Consensus       278 ~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~-~~~~~~iR~~Ll~  318 (425)
T d2okca1         278 LNFLQHMMLMLKTGGRAAVVLPDNVLFE-AGAGETIRKRLLQ  318 (425)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEHHHHHC-STHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCeEEEEechHHhhh-hhhHHHHHHHHHH
Confidence            3589999999999999988886432101 1123455666543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=5e-07  Score=77.62  Aligned_cols=125  Identities=18%  Similarity=0.206  Sum_probs=93.2

Q ss_pred             HHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-CC
Q 021344          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA  234 (314)
Q Consensus       156 ~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-~~  234 (314)
                      ......+...++.+|||+.+|.|.=+.+++..+.+..++++|+++..++..+++++..+.   .++.....|..... ..
T Consensus        92 ~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~---~~~~~~~~~~~~~~~~~  168 (284)
T d1sqga2          92 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM---KATVKQGDGRYPSQWCG  168 (284)
T ss_dssp             HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEEECCTTCTHHHHT
T ss_pred             cccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc---cceeeeccccccchhcc
Confidence            345556778889999999999999998888887667999999999999999999998772   44444444433221 23


Q ss_pred             CCchhhhee------cchhccCCCH----------------HHHHHHHHhhcccCcEEEEEecccCCCCCc
Q 021344          235 SGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTS  283 (314)
Q Consensus       235 ~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~~  283 (314)
                      .+.||.|++      .+++..-++.                ..+|+.+.+.|||||+++-+|-+-.+..+.
T Consensus       169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE  239 (284)
T d1sqga2         169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENS  239 (284)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTH
T ss_pred             cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCH
Confidence            467999986      3445443432                257899999999999999999776555443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=3.7e-07  Score=73.04  Aligned_cols=99  Identities=21%  Similarity=0.260  Sum_probs=75.2

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--------CC
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA  234 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--------~~  234 (314)
                      ..++.+|||+||+.|.|++.+.+. +....++++|+.+-           .   ...++.++.+|+....        ..
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~---~i~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------D---PIVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------C---CCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------c---ccCCceEeecccccchhhhhhhhhcc
Confidence            357889999999999999988875 45568999998651           0   2368899999987632        23


Q ss_pred             CCchhhheecchhccCCCH-----------HHHHHHHHhhcccCcEEEEEecc
Q 021344          235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .++||+|++.....-..+.           ...+.-+.++||+||.+++-.+.
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~  138 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence            5679999997665443332           24577778999999999998875

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.39  E-value=2.2e-07  Score=77.31  Aligned_cols=107  Identities=13%  Similarity=0.098  Sum_probs=71.3

Q ss_pred             HHHHhccCCCCeEEEEcCcccHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-  232 (314)
                      +.+++...++.+|||||++.|..+..++.    .+.+.+++++|+++........        ...+++++.+|..... 
T Consensus        72 ~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~--------~~~~I~~i~gDs~~~~~  143 (232)
T d2bm8a1          72 YHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSDLTT  143 (232)
T ss_dssp             HHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSCSGG
T ss_pred             HHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc--------cccceeeeecccccHHH
Confidence            34444444577999999999987665543    3456799999998754332221        2478999999976533 


Q ss_pred             ---CCCCchhhheecchhccCCCHH-HHHHHHHhhcccCcEEEEEec
Q 021344          233 ---FASGFVDAVHAGAALHCWPSPS-NAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~-~~l~~i~r~LkpGG~l~i~~~  275 (314)
                         +....+|+|+....  |..+.. ..+ ++...|++||++++.+.
T Consensus       144 ~~~l~~~~~dlIfID~~--H~~~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         144 FEHLREMAHPLIFIDNA--HANTFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             GGGGSSSCSSEEEEESS--CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             HHHHHhcCCCEEEEcCC--cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence               23446888876543  333332 223 46689999999999873

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.3e-07  Score=76.46  Aligned_cols=85  Identities=15%  Similarity=0.203  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 021344          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (314)
Q Consensus       153 ~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp  232 (314)
                      ..++.+.+.+...++..|||||+|.|.++..+++.+.  +++++|+++.++...++.+....  ...+++++.+|+.+..
T Consensus         8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~--~~~~~~~i~~D~l~~~   83 (278)
T d1zq9a1           8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKTD   83 (278)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTSC
T ss_pred             HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhc--cccchhhhHHHHhhhh
Confidence            4556777778887889999999999999999999986  99999999999999999887643  2468999999998776


Q ss_pred             CCCCchhhhee
Q 021344          233 FASGFVDAVHA  243 (314)
Q Consensus       233 ~~~~~fD~V~~  243 (314)
                      ++.  ++.|+.
T Consensus        84 ~~~--~~~vV~   92 (278)
T d1zq9a1          84 LPF--FDTCVA   92 (278)
T ss_dssp             CCC--CSEEEE
T ss_pred             hhh--hhhhhc
Confidence            542  344544

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.31  E-value=1.1e-07  Score=60.82  Aligned_cols=46  Identities=15%  Similarity=0.157  Sum_probs=38.4

Q ss_pred             CCCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (314)
                      ..++++||.|++++.....         .+.+.|+.|+..|++++|++.++++..
T Consensus         7 LL~iL~CP~ck~~L~~~~~---------~~~Lvc~~~~~~YPI~dgIPvLL~deA   52 (59)
T d2jnya1           7 LLEVLACPKDKGPLRYLES---------EQLLVNERLNLAYRIDDGIPVLLIDEA   52 (59)
T ss_dssp             GTCCCBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCSSCC
T ss_pred             HHHHhcCCCCCCEeEEeCC---------CCEEEcCccCccccccCCccccCHHHh
Confidence            4578999999999976442         267999999999999999999987643

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3.6e-06  Score=72.39  Aligned_cols=122  Identities=12%  Similarity=0.085  Sum_probs=85.1

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-  234 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-  234 (314)
                      .....+...++.+|||+.+|.|.-+.+++.. +....++++|+++..++..+++++..+.   .++.+...|...+... 
T Consensus        85 l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~---~~~~~~~~d~~~~~~~~  161 (293)
T d2b9ea1          85 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSD  161 (293)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTC
T ss_pred             ccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc---cceeeeehhhhhhcccc
Confidence            3444567788999999999999988777765 3355899999999999999999999873   7899999988665422 


Q ss_pred             --CCchhhheec------chhccCCCH------------------HHHHHHHHhhcccCcEEEEEecccCCCCC
Q 021344          235 --SGFVDAVHAG------AALHCWPSP------------------SNAVAEISRILRSGGVFVGTTFLRYTSST  282 (314)
Q Consensus       235 --~~~fD~V~~~------~vl~h~~d~------------------~~~l~~i~r~LkpGG~l~i~~~~~~~~~~  282 (314)
                        .++||.|++.      +++..-++.                  ..++..+. .|+|||.++-+|-+-.+..+
T Consensus       162 ~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~EN  234 (293)
T d2b9ea1         162 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEEN  234 (293)
T ss_dssp             GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGT
T ss_pred             cccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHh
Confidence              2569999863      333222110                  12344444 47999999988876554443

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.25  E-value=1.6e-07  Score=59.88  Aligned_cols=45  Identities=20%  Similarity=0.416  Sum_probs=37.8

Q ss_pred             CCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (314)
                      +++++||.|+++|.....         .+.+.|..|+..||+++|++.++.+..
T Consensus         4 L~iL~CP~ck~~L~~~~~---------~~~Lvc~~~~laYPI~dGIPvlL~~eA   48 (59)
T d2pk7a1           4 LDILACPICKGPLKLSAD---------KTELISKGAGLAYPIRDGIPVMLESEA   48 (59)
T ss_dssp             GGTCCCTTTCCCCEECTT---------SSEEEETTTTEEEEEETTEECCCGGGC
T ss_pred             HhheECCCCCCcceEeCC---------CCEEecCCcCccccccCCccccCHHHh
Confidence            468999999999976432         267999999999999999999997643

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=4.9e-07  Score=76.13  Aligned_cols=75  Identities=8%  Similarity=0.158  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 021344          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (314)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l  231 (314)
                      ...++.+.+.+...++..|||||||.|.++..+++.+.  +++++|+++.+++..+++...     ..+++++.+|+.+.
T Consensus         7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~~~~ii~~D~l~~   79 (252)
T d1qyra_           7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTF   79 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhh-----ccchhHHhhhhhhh
Confidence            34566788888888899999999999999999999876  999999999999988874432     36899999999876


Q ss_pred             CC
Q 021344          232 PF  233 (314)
Q Consensus       232 p~  233 (314)
                      .+
T Consensus        80 ~~   81 (252)
T d1qyra_          80 NF   81 (252)
T ss_dssp             CH
T ss_pred             cc
Confidence            53

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.21  E-value=2.2e-07  Score=59.36  Aligned_cols=45  Identities=18%  Similarity=0.437  Sum_probs=37.8

Q ss_pred             CCeeeccCCCccchhcCCCCccccccccCceecCCCCccccCccceeeeecccC
Q 021344           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (314)
                      .++++||.|+++|.....         .+.+.|..|+..|++++|++.++.+..
T Consensus         5 L~iL~CP~ck~~L~~~~~---------~~~Lvc~~~~l~YPI~dGIPvlL~~eA   49 (59)
T d2hf1a1           5 LEILVCPLCKGPLVFDKS---------KDELICKGDRLAFPIKDGIPMMLESEA   49 (59)
T ss_dssp             EEECBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCGGGC
T ss_pred             hhhhcCCCCCCeeeEeCC---------CCEEecCCcCccccccCCccccCHHHh
Confidence            468999999999976432         267999999999999999999997643

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.17  E-value=2.3e-06  Score=76.05  Aligned_cols=107  Identities=15%  Similarity=0.117  Sum_probs=80.5

Q ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC------------CCCCeEEEEecCCCCCC
Q 021344          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------------LTSNLALVRADVCRLPF  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~------------~~~~v~~~~~d~~~lp~  233 (314)
                      ++.+|||..||+|..+...+......+|++.|+|+.+++.++++++.++..            ....+.+...|+..+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            467999999999999987766544568999999999999999999876521            01235555666533221


Q ss_pred             -CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       ..+.||+|...    -+..|..+|+.+.+.++.||.|.++...
T Consensus       125 ~~~~~fDvIDiD----PfGs~~pfldsAi~a~~~~Gll~vTaTD  164 (375)
T d2dula1         125 ERHRYFHFIDLD----PFGSPMEFLDTALRSAKRRGILGVTATD  164 (375)
T ss_dssp             HSTTCEEEEEEC----CSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hhcCcCCcccCC----CCCCcHHHHHHHHHHhccCCEEEEEecC
Confidence             24569988853    3567789999999999999999987643

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=2e-06  Score=80.17  Aligned_cols=132  Identities=11%  Similarity=-0.003  Sum_probs=91.7

Q ss_pred             CCCCCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhC----C--------------CCeEEEEeCCHHHHHHHH
Q 021344          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG----T--------------YSGVVALDFSENMLRQCY  207 (314)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~----~--------------~~~v~giD~s~~~~~~a~  207 (314)
                      +.++++..++++|.+.+.+.++.+|+|..||+|.|+..+.+..    .              ...++|+|+++.+...|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            4578999999999999998889999999999999987765531    0              125899999999999998


Q ss_pred             HHHHhcCCCC--CCCeEEEEecCCCCC-CCCCchhhheecchhc--cC-----------CCH-HHHHHHHHhhcccCcEE
Q 021344          208 DFIKQDNTIL--TSNLALVRADVCRLP-FASGFVDAVHAGAALH--CW-----------PSP-SNAVAEISRILRSGGVF  270 (314)
Q Consensus       208 ~~~~~~~~~~--~~~v~~~~~d~~~lp-~~~~~fD~V~~~~vl~--h~-----------~d~-~~~l~~i~r~LkpGG~l  270 (314)
                      -++--++...  .....+..++....+ ....+||+|+++=-+.  ..           .+. ..++..+.+.||+||++
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~  303 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA  303 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence            8776554210  011223334433211 2345799999853221  10           111 25899999999999999


Q ss_pred             EEEeccc
Q 021344          271 VGTTFLR  277 (314)
Q Consensus       271 ~i~~~~~  277 (314)
                      .+..+..
T Consensus       304 aiIlP~~  310 (524)
T d2ar0a1         304 AVVVPDN  310 (524)
T ss_dssp             EEEEEHH
T ss_pred             EEEEehH
Confidence            9988654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.93  E-value=6e-05  Score=62.10  Aligned_cols=113  Identities=15%  Similarity=0.095  Sum_probs=69.0

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec-CCCCCCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRLPFAS  235 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d-~~~lp~~~  235 (314)
                      .+.+.....++++|+|+|||.|.++..++.......+.|+|+--+..+. .......+   ..-+.+...+ +..+  +.
T Consensus        57 ~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~---~ni~~~~~~~dv~~l--~~  130 (257)
T d2p41a1          57 WFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYG---WNLVRLQSGVDVFFI--PP  130 (257)
T ss_dssp             HHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTT---GGGEEEECSCCTTTS--CC
T ss_pred             HHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Cccccccc---cccccchhhhhHHhc--CC
Confidence            3334445567889999999999999999987654578888874221000 00000000   0112333222 2222  36


Q ss_pred             CchhhheecchhccCCCHH-------HHHHHHHhhcccCcEEEEEecc
Q 021344          236 GFVDAVHAGAALHCWPSPS-------NAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~-------~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +..|+|+|.-+ ++.+++.       .+|+-+.+.|+|||-+++-.+.
T Consensus       131 ~~~D~vlcDm~-ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~  177 (257)
T d2p41a1         131 ERCDTLLCDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN  177 (257)
T ss_dssp             CCCSEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred             CcCCEEEeeCC-CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence            78999999765 3344442       5677778999999999887754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.74  E-value=0.00014  Score=56.62  Aligned_cols=103  Identities=17%  Similarity=0.071  Sum_probs=69.2

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-------
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-------  232 (314)
                      ....+++.+||-+|||. |.++..+++.. +.+|+++|.++..++.+++.        .....+..-+.....       
T Consensus        21 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~--------ga~~~~~~~~~~~~~~~~~~~~   91 (170)
T d1e3ja2          21 RAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC--------GADVTLVVDPAKEEESSIIERI   91 (170)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCSEEEECCTTTSCHHHHHHHH
T ss_pred             HhCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHc--------CCcEEEeccccccccchhhhhh
Confidence            44567899999999996 78887777764 35999999999999999883        122222221111110       


Q ss_pred             --CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                        ...+.+|+|+-.     ... ...+....+.|++||++++......
T Consensus        92 ~~~~g~g~D~vid~-----~g~-~~~~~~a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2          92 RSAIGDLPNVTIDC-----SGN-EKCITIGINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             HHHSSSCCSEEEEC-----SCC-HHHHHHHHHHSCTTCEEEECSCCSS
T ss_pred             hcccccCCceeeec-----CCC-hHHHHHHHHHHhcCCceEEEecCCC
Confidence              012357777643     222 3568888999999999998875543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.67  E-value=0.00013  Score=57.34  Aligned_cols=104  Identities=16%  Similarity=0.086  Sum_probs=70.3

Q ss_pred             HHHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-----
Q 021344          158 AQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----  231 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-----  231 (314)
                      +.+..+.+++.+||-+|||. |..+..+++......++++|.++..++.+++.         .-.+++..+-.+.     
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~---------Ga~~~i~~~~~~~~~~i~   90 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL---------GATHVINSKTQDPVAAIK   90 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH---------TCSEEEETTTSCHHHHHH
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc---------CCeEEEeCCCcCHHHHHH
Confidence            44456677899999999997 66677776664345788999999999998873         1123343332221     


Q ss_pred             CCCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+.++.||+|+-.     ... ...++...++++|+|++++....
T Consensus        91 ~~t~gg~D~vid~-----~G~-~~~~~~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2          91 EITDGGVNFALES-----TGS-PEILKQGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             HHTTSCEEEEEEC-----SCC-HHHHHHHHHTEEEEEEEEECCCC
T ss_pred             HHcCCCCcEEEEc-----CCc-HHHHHHHHhcccCceEEEEEeec
Confidence            1224568877643     222 35688999999999999887643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00021  Score=55.77  Aligned_cols=102  Identities=16%  Similarity=0.068  Sum_probs=68.8

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEE-EEecCCCCC------
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLP------  232 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~-~~~d~~~lp------  232 (314)
                      ....+++.+||-+|+|. |.++..+++.....+|+++|.++..++.|++.          ..+. +..+-....      
T Consensus        21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----------Ga~~~~~~~~~~~~~~~~~~   90 (171)
T d1pl8a2          21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----------GADLVLQISKESPQEIARKV   90 (171)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCSEEEECSSCCHHHHHHHH
T ss_pred             HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----------CCcccccccccccccccccc
Confidence            45667889999999998 67777777765445899999999999999872          2222 222211110      


Q ss_pred             --CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                        -....+|+|+..     ... ...++...+.+++||++++......
T Consensus        91 ~~~~g~g~Dvvid~-----~G~-~~~~~~a~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          91 EGQLGCKPEVTIEC-----TGA-EASIQAGIYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             HHHHTSCCSEEEEC-----SCC-HHHHHHHHHHSCTTCEEEECSCCCS
T ss_pred             cccCCCCceEEEec-----cCC-chhHHHHHHHhcCCCEEEEEecCCC
Confidence              012356776643     223 4568899999999999999876544

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.49  E-value=0.00048  Score=55.02  Aligned_cols=105  Identities=13%  Similarity=0.126  Sum_probs=71.4

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC------
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~------  233 (314)
                      ....+++.+||.+|||. |..+..+++.....+|+++|.++..++.|++.          ....+. +-...++      
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----------Ga~~~~-~~~~~~~~~~i~~   88 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIAD-LSLDTPLHEQIAA   88 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEE-TTSSSCHHHHHHH
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----------cccEEE-eCCCcCHHHHHHH
Confidence            45667899999999998 76777777665456999999999999999872          233332 2211111      


Q ss_pred             --CCCchhhheecchhc------c---CCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 --ASGFVDAVHAGAALH------C---WPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 --~~~~fD~V~~~~vl~------h---~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                        ....+|+++-.-..+      +   .......++...++++|||++++....
T Consensus        89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2          89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence              133578877432211      0   112346799999999999999988653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=0.00021  Score=56.33  Aligned_cols=103  Identities=22%  Similarity=0.220  Sum_probs=68.7

Q ss_pred             HHHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----
Q 021344          158 AQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----  232 (314)
                      +.+....+++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    +    .. ..+  |..+..    
T Consensus        20 l~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi--~~~~~~~~~~   88 (182)
T d1vj0a2          20 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----G----AD-LTL--NRRETSVEER   88 (182)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----T----CS-EEE--ETTTSCHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----c----ce-EEE--eccccchHHH
Confidence            33444566789999999996 88888888875334899999999999998872    1    11 222  222111    


Q ss_pred             -------CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 -------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 -------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                             .....+|+|+-.     +..+ ..++...+.|++||++++.....
T Consensus        89 ~~~i~~~~~~~g~Dvvid~-----vG~~-~~~~~a~~~l~~~G~iv~~G~~~  134 (182)
T d1vj0a2          89 RKAIMDITHGRGADFILEA-----TGDS-RALLEGSELLRRGGFYSVAGVAV  134 (182)
T ss_dssp             HHHHHHHTTTSCEEEEEEC-----SSCT-THHHHHHHHEEEEEEEEECCCCS
T ss_pred             HHHHHHhhCCCCceEEeec-----CCch-hHHHHHHHHhcCCCEEEEEeecC
Confidence                   112347877643     2222 34788899999999998876443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=0.00035  Score=60.40  Aligned_cols=74  Identities=12%  Similarity=0.092  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHhccC------CCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 021344          152 DEEFKMAQEYFKSA------QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR  225 (314)
Q Consensus       152 ~~~~~~l~~~l~~~------~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~  225 (314)
                      ....+.+.+.+...      .+.+|||||.|.|.++..+.+.+...+++++|+++...+..++.+.      ..++.++.
T Consensus        23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------~~~~~ii~   96 (322)
T d1i4wa_          23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------GSPLQILK   96 (322)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------TSSCEEEC
T ss_pred             HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------CCCcEEEe
Confidence            34555666655432      4668999999999999999987533489999999999999888653      25789999


Q ss_pred             ecCCCC
Q 021344          226 ADVCRL  231 (314)
Q Consensus       226 ~d~~~l  231 (314)
                      +|+..+
T Consensus        97 ~D~l~~  102 (322)
T d1i4wa_          97 RDPYDW  102 (322)
T ss_dssp             SCTTCH
T ss_pred             Cchhhc
Confidence            998653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.20  E-value=0.00046  Score=54.07  Aligned_cols=103  Identities=13%  Similarity=0.179  Sum_probs=69.5

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----C
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F  233 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~  233 (314)
                      +....+++.+||-+|||. |.++..+++.....+|+++|.++..++.+++.-         -..++...-....     .
T Consensus        21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lG---------a~~~i~~~~~~~~~~v~~~   91 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYG---------ATDILNYKNGHIEDQVMKL   91 (174)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHT---------CSEEECGGGSCHHHHHHHH
T ss_pred             HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhC---------ccccccccchhHHHHHHHH
Confidence            445677899999999998 888888888753357999999999999998731         1122222211110     1


Q ss_pred             -CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       ....+|+|+-.-     ..+ ..+++..+.++|||.+++.....
T Consensus        92 t~g~G~D~vid~~-----g~~-~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          92 TNGKGVDRVIMAG-----GGS-ETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             TTTSCEEEEEECS-----SCT-THHHHHHHHEEEEEEEEECCCCC
T ss_pred             hhccCcceEEEcc-----CCH-HHHHHHHHHHhcCCEEEEEeecC
Confidence             123488776432     222 45788889999999999976543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=8.8e-05  Score=57.93  Aligned_cols=103  Identities=11%  Similarity=0.023  Sum_probs=66.3

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEec-CCC-CCCCCCc
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCR-LPFASGF  237 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d-~~~-lp~~~~~  237 (314)
                      ....+++.+||-+|+|. |.++..+++.. +.+++++|.++..++.+++.-        .. .++... -.+ .....+.
T Consensus        22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lG--------a~-~~i~~~~~~~~~~~~~~~   91 (168)
T d1piwa2          22 RNGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMG--------AD-HYIATLEEGDWGEKYFDT   91 (168)
T ss_dssp             HTTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHT--------CS-EEEEGGGTSCHHHHSCSC
T ss_pred             HhCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccC--------Cc-EEeeccchHHHHHhhhcc
Confidence            34667899999999995 88888777663 349999999999999888731        11 223221 111 1112346


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      ||+|+..-.-.+    ...+....+.|+|||++++.....
T Consensus        92 ~d~vi~~~~~~~----~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          92 FDLIVVCASSLT----DIDFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             EEEEEECCSCST----TCCTTTGGGGEEEEEEEEECCCCC
T ss_pred             cceEEEEecCCc----cchHHHHHHHhhccceEEEecccc
Confidence            888775322111    112456788999999999876543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.14  E-value=0.00095  Score=51.49  Aligned_cols=99  Identities=16%  Similarity=0.142  Sum_probs=65.3

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CC
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA  234 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~  234 (314)
                      ....+++.+||-+|+|. |..+..+++.. ..+|+++|.++..++.+++.         ....++..+-.+..     ..
T Consensus        22 ~~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~---------Ga~~~i~~~~~~~~~~~~~~~   91 (166)
T d1llua2          22 QTNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKL---------GASLTVNARQEDPVEAIQRDI   91 (166)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHHHHHH
T ss_pred             HhCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhcc---------CccccccccchhHHHHHHHhh
Confidence            45667899999999998 77888888775 35999999999999988872         11223322211110     11


Q ss_pred             CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+.+|+|.+..      . ...+....+.|++||++++....
T Consensus        92 ~g~~~~i~~~~------~-~~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2          92 GGAHGVLVTAV------S-NSAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             SSEEEEEECCS------C-HHHHHHHHTTEEEEEEEEECCCC
T ss_pred             cCCcccccccc------c-chHHHHHHHHhcCCcEEEEEEec
Confidence            22233333322      2 35688899999999999987643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.03  E-value=0.0012  Score=51.61  Aligned_cols=103  Identities=15%  Similarity=0.081  Sum_probs=69.9

Q ss_pred             HHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344          159 QEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----  232 (314)
                      .+..+.+++.+||-+|||. |.++..+++......|+.+|.++..++.+++.         .....+...-.+..     
T Consensus        21 ~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~---------Ga~~~i~~~~~~~~~~~~~   91 (174)
T d1e3ia2          21 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL---------GATDCLNPRELDKPVQDVI   91 (174)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHHH
T ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh---------CCCcccCCccchhhhhhhH
Confidence            3445667899999999998 88888888886556899999999998888872         11222221111111     


Q ss_pred             --CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEecc
Q 021344          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL  276 (314)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~~  276 (314)
                        ...+.+|+|+-.     ... ...+.+..+.|++| |++++....
T Consensus        92 ~~~~~~G~d~vie~-----~G~-~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          92 TELTAGGVDYSLDC-----AGT-AQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             HHHHTSCBSEEEES-----SCC-HHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             hhhhcCCCcEEEEe-----ccc-chHHHHHHHHhhcCCeEEEecCCC
Confidence              113457776642     233 34688999999996 999987753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.97  E-value=0.0022  Score=49.91  Aligned_cols=107  Identities=13%  Similarity=0.063  Sum_probs=65.4

Q ss_pred             HHHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----
Q 021344          158 AQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----  232 (314)
                      +.+....+++.+||-+|||. |..+..+++.....+|+++|.++..++.+++.         ....++...-.+..    
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l---------Ga~~~i~~~~~d~~~~~~   89 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL---------GATECLNPKDYDKPIYEV   89 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc---------CCcEEEcCCCchhHHHHH
Confidence            34455677899999999998 56666666653346899999999999999872         12223321111111    


Q ss_pred             ---CCCCchhhheecchhccCCCHHHHHHHHHhhc-ccCcEEEEEecccCC
Q 021344          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFLRYT  279 (314)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L-kpGG~l~i~~~~~~~  279 (314)
                         ...+.+|+|+-.     ...+. .+.+....+ +++|.+++.......
T Consensus        90 ~~~~~~~G~d~vid~-----~g~~~-~~~~~~~~~~~~~G~~v~vG~~~~~  134 (174)
T d1p0fa2          90 ICEKTNGGVDYAVEC-----AGRIE-TMMNALQSTYCGSGVTVVLGLASPN  134 (174)
T ss_dssp             HHHHTTSCBSEEEEC-----SCCHH-HHHHHHHTBCTTTCEEEECCCCCTT
T ss_pred             HHHhcCCCCcEEEEc-----CCCch-HHHHHHHHHHHhcCceEEEEEecCc
Confidence               112356766643     23344 455555555 556999887755433

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.97  E-value=0.0012  Score=51.00  Aligned_cols=103  Identities=17%  Similarity=0.144  Sum_probs=67.9

Q ss_pred             HHhccCCCCeEEEEcC-c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----
Q 021344          160 EYFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----  232 (314)
                      ...+.+++.+||-+|+ | .|..+..+++.....+|+++|.++..++.+++.-        .. ..+..+-.+..     
T Consensus        21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~G--------a~-~~i~~~~~~~~~~~~~   91 (170)
T d1jvba2          21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAG--------AD-YVINASMQDPLAEIRR   91 (170)
T ss_dssp             HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHT--------CS-EEEETTTSCHHHHHHH
T ss_pred             HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcC--------Cc-eeeccCCcCHHHHHHH
Confidence            3456778999999997 4 4666666666543469999999999998888731        11 23332222210     


Q ss_pred             -CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                       ...+.||+|+....      -...++...+.++|||++++.....
T Consensus        92 ~~~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~~~  131 (170)
T d1jvba2          92 ITESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGLFG  131 (170)
T ss_dssp             HTTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCSSC
T ss_pred             Hhhcccchhhhcccc------cchHHHhhhhhcccCCEEEEecccc
Confidence             11345888775422      2455788889999999999876543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.96  E-value=0.0017  Score=49.88  Aligned_cols=98  Identities=21%  Similarity=0.207  Sum_probs=64.8

Q ss_pred             HhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC------C
Q 021344          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F  233 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp------~  233 (314)
                      ....+++.+||-.|+|. |.....+++.. ..+|+++|.++..++.+++.          ..+.+........      .
T Consensus        22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~----------Ga~~~~~~~~~~~~~~~~~~   90 (168)
T d1rjwa2          22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL----------GADLVVNPLKEDAAKFMKEK   90 (168)
T ss_dssp             HHTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----------TCSEEECTTTSCHHHHHHHH
T ss_pred             HhCCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhc----------Ccceecccccchhhhhcccc
Confidence            34567899999999998 66777777664 34899999999999888772          2222322222211      1


Q ss_pred             CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      ..+.+|+|+...      . ...+....+.|+|||.+++....
T Consensus        91 ~~~~~~~v~~~~------~-~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2          91 VGGVHAAVVTAV------S-KPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             HSSEEEEEESSC------C-HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             cCCCceEEeecC------C-HHHHHHHHHHhccCCceEecccc
Confidence            233344443321      2 45689999999999999987643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0025  Score=49.41  Aligned_cols=97  Identities=11%  Similarity=0.055  Sum_probs=66.2

Q ss_pred             HHHhccCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----
Q 021344          159 QEYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----  232 (314)
                      .+..+.+++.+||-.|+  |.|..+..+++.. +.++++++-+++..+.+++.    +    . -.++  |..+..    
T Consensus        21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~----G----a-~~vi--~~~~~~~~~~   88 (174)
T d1yb5a2          21 IHSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN----G----A-HEVF--NHREVNYIDK   88 (174)
T ss_dssp             HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----C-SEEE--ETTSTTHHHH
T ss_pred             HHHhCCCCCCEEEEEecccccccccccccccc-Cccccccccccccccccccc----C----c-cccc--ccccccHHHH
Confidence            34455678999999996  3478888888774 35999999899888887762    1    1 1222  332221    


Q ss_pred             ----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                          ...+.+|+|+....       ...++...++|+|||+++...
T Consensus        89 i~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          89 IKKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             HHHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             hhhhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEEe
Confidence                12446888876432       346888899999999999865

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.85  E-value=0.003  Score=49.29  Aligned_cols=107  Identities=13%  Similarity=0.051  Sum_probs=66.3

Q ss_pred             HHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe-cCCCCC----
Q 021344          159 QEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLP----  232 (314)
Q Consensus       159 ~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~~~lp----  232 (314)
                      .+....+++.+||-+|+|. |.++..+++.....+|+++|.+++.++.|++.-.         ..++.. +.....    
T Consensus        22 ~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA---------~~~in~~~~~~~~~~~~   92 (176)
T d1d1ta2          22 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA---------TECISPKDSTKPISEVL   92 (176)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC---------SEEECGGGCSSCHHHHH
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC---------cEEECccccchHHHHHH
Confidence            3445567899999999997 6667777766544699999999999999998421         122221 111100    


Q ss_pred             --CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccCC
Q 021344          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (314)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~~  279 (314)
                        ...+.+|+|+-.     ...+..+...+..+++++|++++......+
T Consensus        93 ~~~~g~G~d~vi~~-----~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~  136 (176)
T d1d1ta2          93 SEMTGNNVGYTFEV-----IGHLETMIDALASCHMNYGTSVVVGVPPSA  136 (176)
T ss_dssp             HHHHTSCCCEEEEC-----SCCHHHHHHHHTTSCTTTCEEEECSCCCTT
T ss_pred             HHhccccceEEEEe-----CCchHHHHHHHHHhhcCCeEEEEEEccccc
Confidence              112356665543     334555444455555666999887755433

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.75  E-value=0.0026  Score=49.31  Aligned_cols=98  Identities=19%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             cCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-----CCCCc
Q 021344          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGF  237 (314)
Q Consensus       164 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-----~~~~~  237 (314)
                      .+++.+||-+|+|. |.++..+++......++++|.++..++.+++.         ....++..+-....     .....
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~---------ga~~~i~~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL---------GADHVVDARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT---------TCSEEEETTSCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc---------ccceeecCcccHHHHHHHhhCCCC
Confidence            46788999999998 66666666653345899999999988888873         12233332211110     11235


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecc
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      +|+|+-.-     .. ...++...+.|++||++++....
T Consensus       101 ~d~vid~~-----g~-~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2         101 VNVAMDFV-----GS-QATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             EEEEEESS-----CC-HHHHHHGGGGEEEEEEEEECCCS
T ss_pred             ceEEEEec-----Cc-chHHHHHHHHHhCCCEEEEEeCc
Confidence            77776432     22 34588899999999999987753

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.70  E-value=0.0026  Score=52.16  Aligned_cols=59  Identities=17%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             CchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Q 021344          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK  211 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~  211 (314)
                      -+.++++.+.+... .++..|||.=||+|..+.++.+.+.  +.+|+|+++..++.|++++.
T Consensus       197 kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R--~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHc
Confidence            34667777777665 4688999999999999999999876  99999999999999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0014  Score=50.72  Aligned_cols=100  Identities=17%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             HHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-CCCCCc
Q 021344          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGF  237 (314)
Q Consensus       160 ~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p~~~~~  237 (314)
                      +..+.+++.+||-+|+|. |.++..+++.. ..+++++|.++...+.+++.-         .-.++...-... ....+.
T Consensus        24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lG---------ad~~i~~~~~~~~~~~~~~   93 (168)
T d1uufa2          24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALG---------ADEVVNSRNADEMAAHLKS   93 (168)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHT---------CSEEEETTCHHHHHTTTTC
T ss_pred             HHhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccC---------CcEEEECchhhHHHHhcCC
Confidence            345677899999999987 88888888874 458889999998888777631         112222111110 112346


Q ss_pred             hhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      +|+|+..-.     .+ ..+....+.|++||++++...
T Consensus        94 ~D~vid~~g-----~~-~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          94 FDFILNTVA-----AP-HNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             EEEEEECCS-----SC-CCHHHHHTTEEEEEEEEECCC
T ss_pred             Cceeeeeee-----cc-hhHHHHHHHHhcCCEEEEecc
Confidence            887765322     11 236778899999999998764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.48  E-value=0.0021  Score=53.04  Aligned_cols=91  Identities=16%  Similarity=0.062  Sum_probs=62.6

Q ss_pred             HHHHHhccCCC--CeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCC--C----CCCCeEEEEecC
Q 021344          157 MAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--I----LTSNLALVRADV  228 (314)
Q Consensus       157 ~l~~~l~~~~~--~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--~----~~~~v~~~~~d~  228 (314)
                      .+.+.+..+.+  .+|||.-+|.|..+..++..|.  +|+++|-++......++.++....  .    ...+++++.+|.
T Consensus        77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            44445444333  4899999999999999999986  999999999876666554433210  0    013799999996


Q ss_pred             CC-CCCCCCchhhheecchhcc
Q 021344          229 CR-LPFASGFVDAVHAGAALHC  249 (314)
Q Consensus       229 ~~-lp~~~~~fD~V~~~~vl~h  249 (314)
                      .+ +.-..++||+|+..=.+.+
T Consensus       155 ~~~L~~~~~~~DvIYlDPMFp~  176 (250)
T d2oyra1         155 LTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCC
T ss_pred             HHHHhccCCCCCEEEECCCCcc
Confidence            44 3323567999998655543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.37  E-value=0.0026  Score=53.88  Aligned_cols=61  Identities=10%  Similarity=0.058  Sum_probs=51.5

Q ss_pred             CCchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 021344          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (314)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  212 (314)
                      +-+..+++.+.+.... +++.|||.=||+|..+.++.+.+.  +.+|+|+++..++.|++++.+
T Consensus       234 ~kP~~L~~rlI~~~s~-~gdiVlDpF~GSGTT~~AA~~lgR--~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         234 RFPAKLPEFFIRMLTE-PDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCCTHHHHHHHHHHCC-TTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred             cCchHHHHHhhhhccc-CCCEEEecCCCCcHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHHHh
Confidence            3456777777776644 789999999999999999999876  999999999999999987654

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.22  E-value=0.008  Score=52.09  Aligned_cols=132  Identities=14%  Similarity=0.110  Sum_probs=78.2

Q ss_pred             CeEEEEcCcccHHHHHH--------HHh--------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC--CeEEEEecCC
Q 021344          168 GLLVDVSCGSGLFSRKF--------AKS--------GTYSGVVALDFSENMLRQCYDFIKQDNTILTS--NLALVRADVC  229 (314)
Q Consensus       168 ~~iLDiGcG~G~~~~~l--------~~~--------~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~--~v~~~~~d~~  229 (314)
                      -+|.|+||.+|..+..+        .+.        -+..+|+--|.-.+-....=+.+....- ...  -+..+-+.+.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~-~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND-VDGVCFINGVPGSFY  131 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS-CTTCEEEEEEESCSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccccc-CCCCeEEEecCCchh
Confidence            46999999999876322        111        1334666667644333322222222110 001  1334446666


Q ss_pred             CCCCCCCchhhheecchhccCCC---------------------------------HHHHHHHHHhhcccCcEEEEEecc
Q 021344          230 RLPFASGFVDAVHAGAALHCWPS---------------------------------PSNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d---------------------------------~~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .--|++++.|+++++..|||+..                                 ...+|+.=++-|+|||++++....
T Consensus       132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g  211 (359)
T d1m6ex_         132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            55578999999999999999752                                 124777778889999999998887


Q ss_pred             cCCCC-----CccchHHHHHHHHhhhccc
Q 021344          277 RYTSS-----TSLTGRVLREVMLIRIKSH  300 (314)
Q Consensus       277 ~~~~~-----~~~~~~~l~~~~~~~~~~~  300 (314)
                      +....     .....+.+...+.+-+..-
T Consensus       212 r~~~~~~~~~~~~~~~~l~~al~dmv~eG  240 (359)
T d1m6ex_         212 RRSEDRASTECCLIWQLLAMALNQMVSEG  240 (359)
T ss_dssp             CSSSSSSSTTTSTTTHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCCccchHHHHHHHHHHHHHHcC
Confidence            75321     1233455555554433333

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.16  E-value=0.0067  Score=50.28  Aligned_cols=61  Identities=15%  Similarity=0.166  Sum_probs=52.1

Q ss_pred             CchHHHHHHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021344          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (314)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  213 (314)
                      -+.++++.+.+... .++..|||.=+|+|..+.+..+.+.  +.+|+|+++...+.|++++...
T Consensus       192 kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR--~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         192 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            34666777777654 4789999999999999999999876  9999999999999999998764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.11  E-value=0.014  Score=45.00  Aligned_cols=105  Identities=16%  Similarity=0.109  Sum_probs=64.2

Q ss_pred             HHHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEE-ecCCCCC---
Q 021344          158 AQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLP---  232 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~-~d~~~lp---  232 (314)
                      +.+....+++.+||-+|+|. |.....+++.....+|+++|.++...+.+++.-         ....+. .+..+.-   
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G---------a~~~i~~~~~~~~~~~~   90 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG---------ATECVNPQDYKKPIQEV   90 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC---------CeeEEecCCchhHHHHH
Confidence            44455677899999999976 445555555554569999999999999888731         112222 1221110   


Q ss_pred             ---CCCCchhhheecchhccCCCHHHHHHHHHhhcccC-cEEEEEeccc
Q 021344          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFLR  277 (314)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpG-G~l~i~~~~~  277 (314)
                         ...+.+|+|+-...     . ...++.....+++| |.+++.....
T Consensus        91 ~~~~~~~G~D~vid~~G-----~-~~~~~~a~~~~~~~~g~~~~~~~~~  133 (176)
T d2jhfa2          91 LTEMSNGGVDFSFEVIG-----R-LDTMVTALSCCQEAYGVSVIVGVPP  133 (176)
T ss_dssp             HHHHTTSCBSEEEECSC-----C-HHHHHHHHHHBCTTTCEEEECSCCC
T ss_pred             HHHHhcCCCCEEEecCC-----c-hhHHHHHHHHHhcCCcceEEecCCC
Confidence               12346787775432     2 34466677777776 5666555433

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.04  E-value=0.012  Score=45.19  Aligned_cols=102  Identities=15%  Similarity=0.109  Sum_probs=65.6

Q ss_pred             HHHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----
Q 021344          158 AQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----  232 (314)
                      +.+..+.+++.+||-+|+|. |.++..+++......|+++|.++...+.+++.-         ...++..+-....    
T Consensus        20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lG---------a~~~i~~~~~~~~~~~~   90 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFG---------ATECINPQDFSKPIQEV   90 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHT---------CSEEECGGGCSSCHHHH
T ss_pred             HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhC---------CcEEEeCCchhhHHHHH
Confidence            44455677899999999985 556666666543458999999999988888731         1222222111111    


Q ss_pred             ---CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                         ...+.+|+|+-.-.      ....++.....+++||.+++..
T Consensus        91 ~~~~~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          91 LIEMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             HHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHcCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEEE
Confidence               11345787775322      2456888899999997776554

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.04  E-value=0.0015  Score=36.59  Aligned_cols=30  Identities=20%  Similarity=0.544  Sum_probs=24.3

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccccCc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (314)
                      =.||.|+++..-.+.          ..+.|+.|+|.|...
T Consensus         4 P~CP~C~seytYedg----------~l~vCPeC~hEW~~~   33 (38)
T d2akla2           4 PPCPQCNSEYTYEDG----------ALLVCPECAHEWSPN   33 (38)
T ss_dssp             CCCTTTCCCCCEECS----------SSEEETTTTEEECTT
T ss_pred             CcCCCCCCcceEcCC----------CEEECCcccCcCCcc
Confidence            459999999876664          689999999998543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.87  E-value=0.0018  Score=49.83  Aligned_cols=98  Identities=19%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheec
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~  244 (314)
                      ++.+|+-||+|. |..+...+... ..+|+.+|.+++.++..+....       .+++....+-..+.-.-...|+|+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~-------~~~~~~~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG-------SRVELLYSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG-------GGSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc-------ccceeehhhhhhHHHhhccCcEEEEe
Confidence            578999999998 77777666664 3599999999999988887654       34555544432222112357988876


Q ss_pred             chhccCCCHHHHHHHHHhhcccCcEEE
Q 021344          245 AALHCWPSPSNAVAEISRILRSGGVFV  271 (314)
Q Consensus       245 ~vl~h~~d~~~~l~~i~r~LkpGG~l~  271 (314)
                      -.+---.-|.-+=+++.+.+|||.+++
T Consensus       103 alipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         103 VLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             eecCCcccCeeecHHHHhhcCCCcEEE
Confidence            544333344445677888999999875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.82  E-value=0.014  Score=44.62  Aligned_cols=92  Identities=14%  Similarity=0.207  Sum_probs=60.3

Q ss_pred             eEEEEcCcc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344          169 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (314)
Q Consensus       169 ~iLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v  246 (314)
                      +|+=||||.  |.++..+.+.+...+|+|+|.++..++.+++.         ..+.....+....  .+...|+|+..--
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~---------~~~~~~~~~~~~~--~~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---------GIIDEGTTSIAKV--EDFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---------TSCSEEESCGGGG--GGTCCSEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh---------hcchhhhhhhhhh--hccccccccccCC
Confidence            578899997  45777888888777999999999999998872         1222222222221  2335687775432


Q ss_pred             hccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          247 LHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       247 l~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+   ....++.++...++++..++-..
T Consensus        72 ~~---~~~~vl~~l~~~~~~~~ii~d~~   96 (171)
T d2g5ca2          72 VR---TFREIAKKLSYILSEDATVTDQG   96 (171)
T ss_dssp             HH---HHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ch---hhhhhhhhhhccccccccccccc
Confidence            11   12467888889998887664433

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.024  Score=43.62  Aligned_cols=101  Identities=9%  Similarity=0.053  Sum_probs=66.7

Q ss_pred             HHHHhccCCCCeEEEEcCcc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC--
Q 021344          158 AQEYFKSAQGGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--  233 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~--  233 (314)
                      +.+..+.+++++||-.|+|.  |.++..+++.. +.+|++++.++...+.+++.-        . -+.+  |..+..+  
T Consensus        20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lG--------a-~~vi--~~~~~d~~~   87 (179)
T d1qora2          20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAG--------A-WQVI--NYREEDLVE   87 (179)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHT--------C-SEEE--ETTTSCHHH
T ss_pred             HHHHhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcC--------C-eEEE--ECCCCCHHH
Confidence            34445567889999997664  77888887764 359999999999998888631        1 1223  3322211  


Q ss_pred             ------CCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          234 ------ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       234 ------~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                            ....+|+|+....       ...+......|+++|++++.....
T Consensus        88 ~v~~~t~g~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~g~~~  130 (179)
T d1qora2          88 RLKEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGNSS  130 (179)
T ss_dssp             HHHHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCCTT
T ss_pred             HHHHHhCCCCeEEEEeCcc-------HHHHHHHHHHHhcCCeeeeccccc
Confidence                  2346887765432       124778889999999987755433

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.74  E-value=0.029  Score=43.38  Aligned_cols=102  Identities=11%  Similarity=-0.047  Sum_probs=68.1

Q ss_pred             HHHHHhccCCCCeEEEEcCcc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--
Q 021344          157 MAQEYFKSAQGGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--  232 (314)
                      .+.+..+.+++++||-.|++.  |..+..+++.. ..+|++++-+++..+.+++.    +    . -..+.-+-+...  
T Consensus        20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~----G----a-~~vi~~~~~~~~~~   89 (182)
T d1v3va2          20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI----G----F-DAAFNYKTVNSLEE   89 (182)
T ss_dssp             HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----C-SEEEETTSCSCHHH
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhh----h----h-hhhcccccccHHHH
Confidence            455566777899999888855  67888888875 45999999999888777762    1    1 122222211110  


Q ss_pred             ----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEec
Q 021344          233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                          ...+.+|+|+-.     +.  ...+++..+.|++||.+++...
T Consensus        90 ~~~~~~~~Gvd~v~D~-----vG--~~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2          90 ALKKASPDGYDCYFDN-----VG--GEFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             HHHHHCTTCEEEEEES-----SC--HHHHHHHGGGEEEEEEEEECCC
T ss_pred             HHHHhhcCCCceeEEe-----cC--chhhhhhhhhccCCCeEEeecc
Confidence                123457776643     22  3568999999999999998653

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.55  E-value=0.012  Score=45.60  Aligned_cols=103  Identities=11%  Similarity=-0.030  Sum_probs=65.9

Q ss_pred             HhccCCCCeEEEEcCc--ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC-CC-CCCCCC
Q 021344          161 YFKSAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CR-LPFASG  236 (314)
Q Consensus       161 ~l~~~~~~~iLDiGcG--~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~-lp~~~~  236 (314)
                      .-...++.+||--|.+  .|.++.++++.. +.+|+++.-+++..+.+++.-.       +.+--...+. +. .....+
T Consensus        26 ~g~~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa-------~~vi~~~~~~~~~~~~~~~~   97 (176)
T d1xa0a2          26 HGLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGA-------KEVLAREDVMAERIRPLDKQ   97 (176)
T ss_dssp             TTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTC-------SEEEECC---------CCSC
T ss_pred             hCCCCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhccc-------ceeeecchhHHHHHHHhhcc
Confidence            3445567889999854  478888888774 4599999988888888876311       1111111111 11 122356


Q ss_pred             chhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEecccC
Q 021344          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (314)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~~  278 (314)
                      .+|+|+-.-.       ...+.+..++|++||+++.......
T Consensus        98 gvD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~~~g  132 (176)
T d1xa0a2          98 RWAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGLTGG  132 (176)
T ss_dssp             CEEEEEECST-------TTTHHHHHHTEEEEEEEEECSCCSS
T ss_pred             CcCEEEEcCC-------chhHHHHHHHhCCCceEEEeecccC
Confidence            7998775422       2348889999999999998886543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.54  E-value=0.015  Score=44.98  Aligned_cols=100  Identities=18%  Similarity=0.080  Sum_probs=64.8

Q ss_pred             HHHHhccCCCCeEEEEcC-c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---
Q 021344          158 AQEYFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---  232 (314)
                      +.+....+++.+||-.|. | .|.++..+++.. +.++++++-+++..+.+++    .+    .. ..+...-.++.   
T Consensus        17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~----~G----a~-~vi~~~~~~~~~~v   86 (183)
T d1pqwa_          17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR----LG----VE-YVGDSRSVDFADEI   86 (183)
T ss_dssp             HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT----TC----CS-EEEETTCSTHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeeccccccccccc----cc----cc-ccccCCccCHHHHH
Confidence            344555677899999874 3 478888888774 3499998888877777765    22    11 22221111110   


Q ss_pred             ---CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                         .....||+|+....       ...++++.++|+++|+++...
T Consensus        87 ~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          87 LELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             HHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred             HHHhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEEc
Confidence               12356999886432       245788899999999998864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.34  E-value=0.0042  Score=48.08  Aligned_cols=94  Identities=19%  Similarity=0.133  Sum_probs=61.3

Q ss_pred             HhccCCCCeEEEEcC-cc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCC
Q 021344          161 YFKSAQGGLLVDVSC-GS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FAS  235 (314)
Q Consensus       161 ~l~~~~~~~iLDiGc-G~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~  235 (314)
                      ..+.+++++||-.|. |. |..+..+++.. +.+|++++-+++..+.+++.    +    ... .+  |..+..   -..
T Consensus        22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~l----G----a~~-~i--~~~~~~~~~~~~   89 (171)
T d1iz0a2          22 RAQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL----G----AEE-AA--TYAEVPERAKAW   89 (171)
T ss_dssp             HTTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT----T----CSE-EE--EGGGHHHHHHHT
T ss_pred             HhCCCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccc----c----cce-ee--ehhhhhhhhhcc
Confidence            356678999999985 44 78888888774 35999999998888777762    1    111 11  222211   113


Q ss_pred             CchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +.+|+|+-..     .+   .+....+.|+|||+++...
T Consensus        90 ~g~D~v~d~~-----G~---~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          90 GGLDLVLEVR-----GK---EVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             TSEEEEEECS-----CT---THHHHHTTEEEEEEEEEC-
T ss_pred             cccccccccc-----ch---hHHHHHHHHhcCCcEEEEe
Confidence            4588877532     21   2677889999999998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.93  E-value=0.087  Score=40.09  Aligned_cols=51  Identities=18%  Similarity=0.171  Sum_probs=38.6

Q ss_pred             HHHHhccCCCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021344          158 AQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (314)
Q Consensus       158 l~~~l~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (314)
                      +.+....+++.+||-+|+|. |.....+++.....+|+++|.+++.++.+++
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            34455677899999999998 4444445555445689999999999998887

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.41  E-value=0.061  Score=40.64  Aligned_cols=87  Identities=6%  Similarity=0.054  Sum_probs=55.8

Q ss_pred             eEEEEcCcc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhheecch
Q 021344          169 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (314)
Q Consensus       169 ~iLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V~~~~v  246 (314)
                      +|.=||+|.  +.++..+.+.+.  +|+++|.+++.++.+++.         ..+.....+.+.    -...|+|+..--
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~---------~~~~~~~~~~~~----~~~~DiIilavp   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVER---------QLVDEAGQDLSL----LQTAKIIFLCTP   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---------TSCSEEESCGGG----GTTCSEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHh---------hccceeeeeccc----ccccccccccCc
Confidence            577789996  457778888776  999999999888877662         112122222222    235788875322


Q ss_pred             hccCCCHHHHHHHHHhhcccCcEEEEE
Q 021344          247 LHCWPSPSNAVAEISRILRSGGVFVGT  273 (314)
Q Consensus       247 l~h~~d~~~~l~~i~r~LkpGG~l~i~  273 (314)
                      ..   ....+++++...|+++-+++-.
T Consensus        67 ~~---~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          67 IQ---LILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             HH---HHHHHHHHHGGGSCTTCEEEEC
T ss_pred             Hh---hhhhhhhhhhhhcccccceeec
Confidence            11   2246788888888888866443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.16  Score=41.30  Aligned_cols=80  Identities=18%  Similarity=0.157  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      +++.+|-.|++.|-   .+..|++.|.  +|+.+|.+++.++.+.+.++..+  ...++.++.+|+.+..          
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~v~~~~   84 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILSMFSAIR   84 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEEEccCCCHHHHHHHHHHHH
Confidence            47899999998874   6677777776  99999999999988888777765  2357888999997632          


Q ss_pred             CCCCchhhheecchhcc
Q 021344          233 FASGFVDAVHAGAALHC  249 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h  249 (314)
                      -.-+..|+++.+....+
T Consensus        85 ~~~g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          85 SQHSGVDICINNAGLAR  101 (257)
T ss_dssp             HHHCCCSEEEECCCCCC
T ss_pred             HhcCCCCEEEecccccC
Confidence            01246788776554433

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.31  E-value=0.017  Score=44.80  Aligned_cols=106  Identities=17%  Similarity=0.097  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCcc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCCCeEEEEecCCCCC--CC-----
Q 021344          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRLP--FA-----  234 (314)
Q Consensus       166 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~v~~~~~d~~~lp--~~-----  234 (314)
                      ++.+||-||+|. |..+...+... ..+|+++|.++..++..++.....-..   .....+-..+.+..+.  +.     
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            577999999998 66666666553 459999999999888888743211000   0000000000000000  00     


Q ss_pred             -----CCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEE
Q 021344          235 -----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       235 -----~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i  272 (314)
                           -...|+|+..-.+---.-|.-+=+++.+.+|||.+++=
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD  149 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID  149 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence                 12468877655444334444456778889999998763

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.0088  Score=35.94  Aligned_cols=41  Identities=17%  Similarity=0.381  Sum_probs=27.6

Q ss_pred             CCCeeeccCCCccchh-cCCCCccccccccCceecCCCCccc
Q 021344           57 EGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        57 ~~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ..+++.||.|++.... ...+....++.+.-.+.|.+||+.|
T Consensus         6 ~T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           6 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             ECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             ccCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            4578999999996321 1112224456666789999999886

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=93.90  E-value=0.56  Score=38.92  Aligned_cols=107  Identities=19%  Similarity=0.109  Sum_probs=72.7

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC-C--CCCCchh----
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVD----  239 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~l-p--~~~~~fD----  239 (314)
                      ...|+.+|||-=.-...+ ....+.+++-+|. +.+++.-++.+...+.....+..++..|+.+. +  +....||    
T Consensus        90 ~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~p  167 (297)
T d2uyoa1          90 IRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR  167 (297)
T ss_dssp             CCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred             CCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCC
Confidence            456778999975544444 2234567888885 88888777778776533346778888888652 1  1122233    


Q ss_pred             -hheecchhccCCCH--HHHHHHHHhhcccCcEEEEEec
Q 021344          240 -AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       240 -~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       ++++-.++.+++..  ..+|+.+.....||+.+++...
T Consensus       168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence             55666778888644  5889999999999999988654

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=93.74  E-value=0.012  Score=36.50  Aligned_cols=43  Identities=21%  Similarity=0.308  Sum_probs=27.4

Q ss_pred             CCCCeeeccCCCccchhc-CCCCccccccccCceecCCCCcccc
Q 021344           56 LEGDLFSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYS   98 (314)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~-~~~~~~~~~i~~~~l~C~~C~~~~~   98 (314)
                      +....+.||.|++..... ..+....++.+.-.+.|.+||+.|.
T Consensus        11 ~pt~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wr   54 (57)
T d1qypa_          11 LPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR   54 (57)
T ss_dssp             SCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred             CCcccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCcce
Confidence            334457899999963211 1112234566667899999999873

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.34  E-value=0.18  Score=38.79  Aligned_cols=102  Identities=13%  Similarity=0.016  Sum_probs=61.3

Q ss_pred             HHHHhccCCC--CeEEEEc--CcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC-
Q 021344          158 AQEYFKSAQG--GLLVDVS--CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (314)
Q Consensus       158 l~~~l~~~~~--~~iLDiG--cG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp-  232 (314)
                      +.+..+.+++  .+||-.|  .|.|.++.++++......+++++-+++......+.+        ..-..+...-.... 
T Consensus        20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~--------gad~vi~~~~~~~~~   91 (187)
T d1vj1a2          20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL--------GFDAAVNYKTGNVAE   91 (187)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS--------CCSEEEETTSSCHHH
T ss_pred             HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc--------cceEEeeccchhHHH
Confidence            4444444544  7799887  355999999999754447888887766554443321        11122222211111 


Q ss_pred             ----CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                          ..++.+|+|+-.-     .  ...++...+.|++||+++...
T Consensus        92 ~~~~~~~~GvDvv~D~v-----G--g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2          92 QLREACPGGVDVYFDNV-----G--GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             HHHHHCTTCEEEEEESS-----C--HHHHHHHHTTEEEEEEEEEC-
T ss_pred             HHHHHhccCceEEEecC-----C--chhHHHHhhhccccccEEEec
Confidence                1234588887432     2  356889999999999998754

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.024  Score=35.17  Aligned_cols=31  Identities=13%  Similarity=0.323  Sum_probs=22.5

Q ss_pred             CCeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      ...+.||.|++.....+.        ..+.+.|..||.+
T Consensus         9 ~~~~~Cp~Cgs~~ii~D~--------~~Ge~vC~~CG~V   39 (58)
T d1dl6a_           9 LPRVTCPNHPDAILVEDY--------RAGDMICPECGLV   39 (58)
T ss_dssp             CSCCSBTTBSSSCCEECS--------SSCCEECTTTCCE
T ss_pred             ccccCCCCCCCCCEEEEC--------CCCcEecccCCCE
Confidence            346779999998654332        2378999999865

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=92.54  E-value=0.21  Score=40.56  Aligned_cols=108  Identities=17%  Similarity=0.081  Sum_probs=70.4

Q ss_pred             CCCCeEEEEcCcccHHHHHHHHhCC----------------------------------------CCeEEEEeCCHHHHH
Q 021344          165 AQGGLLVDVSCGSGLFSRKFAKSGT----------------------------------------YSGVVALDFSENMLR  204 (314)
Q Consensus       165 ~~~~~iLDiGcG~G~~~~~l~~~~~----------------------------------------~~~v~giD~s~~~~~  204 (314)
                      ..+..++|--||+|.++...+....                                        ...++|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            3455799999999999887765310                                        024678999999988


Q ss_pred             HHH---HHHHhcCCCCCCCeEEEEecCCCCC-C----CCCchhhheecch----hccCC-C----HHHHHHHHHhhcccC
Q 021344          205 QCY---DFIKQDNTILTSNLALVRADVCRLP-F----ASGFVDAVHAGAA----LHCWP-S----PSNAVAEISRILRSG  267 (314)
Q Consensus       205 ~a~---~~~~~~~~~~~~~v~~~~~d~~~lp-~----~~~~fD~V~~~~v----l~h~~-d----~~~~l~~i~r~LkpG  267 (314)
                      .|+   ++++..+  ....+.+.+.|+.+.. .    .....++|+++=-    |..-. .    ...++..+.+++...
T Consensus       129 ~A~~~r~n~~~Ag--l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~  206 (249)
T d1o9ga_         129 AARRLRERLTAEG--GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  206 (249)
T ss_dssp             HHHHHHHHHHHTT--SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHcC--CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCC
Confidence            884   5777776  4678999999986642 1    2345678887522    21111 1    235566677777655


Q ss_pred             cEEEEEe
Q 021344          268 GVFVGTT  274 (314)
Q Consensus       268 G~l~i~~  274 (314)
                      ..++++.
T Consensus       207 s~~~it~  213 (249)
T d1o9ga_         207 AVIAVTD  213 (249)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEeC
Confidence            6666655

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.07  E-value=0.039  Score=35.76  Aligned_cols=41  Identities=17%  Similarity=0.221  Sum_probs=26.5

Q ss_pred             CeeeccCCCccchh-cCCCCccccccccCceecCCCCccccC
Q 021344           59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (314)
Q Consensus        59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (314)
                      ....||.|++.... ........++.+.-.+.|.+|++.|..
T Consensus        22 t~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~   63 (72)
T d1twfi2          22 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS   63 (72)
T ss_dssp             CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred             cCCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCccc
Confidence            34689999985311 111222445666678999999999843

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.81  E-value=0.088  Score=40.12  Aligned_cols=98  Identities=14%  Similarity=0.102  Sum_probs=63.2

Q ss_pred             cCCCCeEEEEcC--cccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC-C--CCCCCCch
Q 021344          164 SAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-R--LPFASGFV  238 (314)
Q Consensus       164 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~--lp~~~~~f  238 (314)
                      ..++.+||--|.  |.|.++.++++.. ..+|+++.-+++..+.+++.-       .+.+ +...|.. +  .....+.+
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lG-------ad~v-i~~~~~~~~~~~~~~~~gv   91 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLG-------ASEV-ISREDVYDGTLKALSKQQW   91 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHT-------CSEE-EEHHHHCSSCCCSSCCCCE
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhc-------ccce-EeccchhchhhhcccCCCc
Confidence            334567888774  3478888888874 349999999888877777631       1222 2222211 1  12234568


Q ss_pred             hhheecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      |+|+-.     +.  ...+.+..+.|++||++++.....
T Consensus        92 d~vid~-----vg--g~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          92 QGAVDP-----VG--GKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             EEEEES-----CC--THHHHHHHTTEEEEEEEEECCCSS
T ss_pred             eEEEec-----Cc--HHHHHHHHHHhccCceEEEeeccC
Confidence            887643     22  346889999999999999877554

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.36  Score=39.46  Aligned_cols=102  Identities=13%  Similarity=0.161  Sum_probs=70.9

Q ss_pred             CCeE-EEEcCcccH---HHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC--------
Q 021344          167 GGLL-VDVSCGSGL---FSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------  233 (314)
Q Consensus       167 ~~~i-LDiGcG~G~---~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~--------  233 (314)
                      |++| |--|++.|-   .+..|++. +.  +|+..+-+++.++.+.+.++..+    .++.++.+|+.+...        
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dvs~~~sv~~~~~~~   75 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDLQSIRALRDFL   75 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEEecCCHHHHHHHHHHH
Confidence            4566 566766653   44566665 44  99999999999998888888765    678999999987431        


Q ss_pred             --CCCchhhheecchhccCC---C----------------HHHHHHHHHhhcccCcEEEEEe
Q 021344          234 --ASGFVDAVHAGAALHCWP---S----------------PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       234 --~~~~fD~V~~~~vl~h~~---d----------------~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                        .-++.|+++.+..+.+..   +                +..+.+.+...|+++|.++...
T Consensus        76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence              124789888876553321   1                1135677788889999987665

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.98  E-value=0.47  Score=38.34  Aligned_cols=103  Identities=17%  Similarity=0.245  Sum_probs=70.6

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEE-EeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---------
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVA-LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~g-iD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---------  232 (314)
                      .|+++|-.|.+.|   ..+..|++.|.  +|+. .+-++..++.+.+.+...+    .++.++.+|+.+..         
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~~~~~   78 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEVVALFDKA   78 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC----CCceEecCCCCCHHHHHHHHHHH
Confidence            5788998887766   46777777776  7776 4667777888888887765    68899999997632         


Q ss_pred             -CCCCchhhheecchhccCCCH-------------------HHHHHHHHhhcccCcEEEEEe
Q 021344          233 -FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~-------------------~~~l~~i~r~LkpGG~l~i~~  274 (314)
                       ..-+..|+++.+..+.+..+.                   ....+.+...++.+|.+++..
T Consensus        79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          79 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence             112467877776655544321                   135677777888777666554

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=90.90  E-value=0.39  Score=41.13  Aligned_cols=81  Identities=11%  Similarity=0.086  Sum_probs=50.1

Q ss_pred             hccCCCCeEEEEcCcccHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 021344          162 FKSAQGGLLVDVSCGSGLFSRKFAKSG-------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (314)
Q Consensus       162 l~~~~~~~iLDiGcG~G~~~~~l~~~~-------~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~  234 (314)
                      +.......|+|+|+|+|.++..+....       ...+++-+|.|+...+.-++.+...     .++.++ .++..+|. 
T Consensus        75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~-----~~i~w~-~~~~~~~~-  147 (365)
T d1zkda1          75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVPE-  147 (365)
T ss_dssp             TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSCC-
T ss_pred             hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc-----ccceec-cChhhccc-
Confidence            334345679999999999988776542       2346899999998766666655432     355543 34444431 


Q ss_pred             CCchhhheecchhccCC
Q 021344          235 SGFVDAVHAGAALHCWP  251 (314)
Q Consensus       235 ~~~fD~V~~~~vl~h~~  251 (314)
                        ..-+|+++.++.-+|
T Consensus       148 --~~g~iiaNE~fDAlP  162 (365)
T d1zkda1         148 --GPAVILANEYFDVLP  162 (365)
T ss_dssp             --SSEEEEEESSGGGSC
T ss_pred             --CCeEEEecccCcccc
Confidence              124566666555554

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=90.49  E-value=0.51  Score=38.96  Aligned_cols=68  Identities=16%  Similarity=0.293  Sum_probs=51.2

Q ss_pred             eEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC-CCchhhheecch
Q 021344          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAA  246 (314)
Q Consensus       169 ~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~-~~~fD~V~~~~v  246 (314)
                      +|||+=||.|.+..-+...|. .-+.++|+++.+.+..+.+.         .-.++.+|+.++... -..+|+++...-
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~-~~~~a~e~d~~a~~~~~~N~---------~~~~~~~Di~~~~~~~~~~~dll~~g~P   70 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPP   70 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTC-EEEEEEECCHHHHHHHHHHC---------CSEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred             eEEEeCcCcCHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC---------CCCCccCChhhCCHhHcccccEEeeccc
Confidence            699999999999999988885 34669999999888777652         345678999887432 235888886533

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.31  E-value=0.061  Score=32.18  Aligned_cols=29  Identities=28%  Similarity=0.568  Sum_probs=20.6

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      ...||.|++..+..+.        .++.+.|..||.+
T Consensus         5 ~~~Cp~Cgs~~iv~D~--------~~Ge~vC~~CG~V   33 (50)
T d1pfta_           5 QKVCPACESAELIYDP--------ERGEIVCAKCGYV   33 (50)
T ss_dssp             CCSCTTTSCCCEEEET--------TTTEEEESSSCCB
T ss_pred             cccCcCCCCCcEEEEC--------CCCeEecccCCcE
Confidence            3469999987544322        3478999999865

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.4  Score=38.73  Aligned_cols=85  Identities=15%  Similarity=0.213  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      +|+.+|-.|++.|-   .+..+++.|.  +|+.+|.+++.++.+.+.+....  ...++.++.+|+.+..-         
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQQQLRDTFRKVV   77 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhc--CCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            47788999987763   5666777776  99999999998888877765532  23578999999976320         


Q ss_pred             -CCCchhhheecchhccCCCHH
Q 021344          234 -ASGFVDAVHAGAALHCWPSPS  254 (314)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~~  254 (314)
                       .-++.|+++.+..+....+.+
T Consensus        78 ~~~G~iDilVnnAg~~~~~~~~   99 (254)
T d2gdza1          78 DHFGRLDILVNNAGVNNEKNWE   99 (254)
T ss_dssp             HHHSCCCEEEECCCCCCSSSHH
T ss_pred             HHcCCcCeecccccccccccch
Confidence             124688888776666555543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.07  E-value=0.58  Score=35.60  Aligned_cols=95  Identities=14%  Similarity=0.072  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCc--ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCC--CCCCCCCchhhh
Q 021344          166 QGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPFASGFVDAV  241 (314)
Q Consensus       166 ~~~~iLDiGcG--~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~--~lp~~~~~fD~V  241 (314)
                      ++++||-.|..  .|..+.++++.. +.+|+++.-+++..+.+++.-         --.++.-+-.  .-.+....+|.|
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lG---------ad~vi~~~~~~~~~~l~~~~~~~v  100 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLG---------ASRVLPRDEFAESRPLEKQVWAGA  100 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHT---------EEEEEEGGGSSSCCSSCCCCEEEE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhc---------cccccccccHHHHHHHHhhcCCee
Confidence            34577776643  477888888874 459999999988888777631         1122222211  112334556765


Q ss_pred             eecchhccCCCHHHHHHHHHhhcccCcEEEEEeccc
Q 021344          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~~~~  277 (314)
                      +     +.+.  ...+.+..+.|+++|+++......
T Consensus       101 v-----D~Vg--g~~~~~~l~~l~~~Griv~~G~~~  129 (177)
T d1o89a2         101 I-----DTVG--DKVLAKVLAQMNYGGCVAACGLAG  129 (177)
T ss_dssp             E-----ESSC--HHHHHHHHHTEEEEEEEEECCCTT
T ss_pred             E-----EEcc--hHHHHHHHHHhccccceEeecccC
Confidence            4     2232  346889999999999999876543

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.96  E-value=0.04  Score=35.51  Aligned_cols=29  Identities=24%  Similarity=0.618  Sum_probs=21.3

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      -+.||.|+..-.....         .+++.|..|+..|
T Consensus        27 ky~Cp~Cgk~~vkR~a---------~GIW~C~kC~~~~   55 (73)
T d1vqoz1          27 DHACPNCGEDRVDRQG---------TGIWQCSYCDYKF   55 (73)
T ss_dssp             CBCCSSSSCSCEEEEE---------TTEEEETTTCCEE
T ss_pred             CccCCCCCCceeEEEE---------EEEEECCCCCCEE
Confidence            5679999996433221         2799999999886

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.95  E-value=4.1  Score=33.87  Aligned_cols=118  Identities=13%  Similarity=0.168  Sum_probs=69.9

Q ss_pred             HHHHHhccCCCCeEEEEcCcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC------------------CCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN------------------TILT  218 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------~~~~  218 (314)
                      .+.+++...+...|+-+|||.=.....+....++..++=+|+ ++.++.=++.+++..                  ....
T Consensus        87 ~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s  165 (328)
T d1rjda_          87 AILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQ  165 (328)
T ss_dssp             HHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEEC
T ss_pred             HHHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCC
Confidence            344455555566899999999766656665566556666676 333332222222110                  0023


Q ss_pred             CCeEEEEecCCCCCC---------CCCchhhheecchhccCCCH--HHHHHHHHhhcccCcEEEEEecc
Q 021344          219 SNLALVRADVCRLPF---------ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       219 ~~v~~~~~d~~~lp~---------~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                      .+..++.+|+.++..         ..+.--++++-.|+.+++..  .++++.+.+... +|.+++.++.
T Consensus       166 ~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i  233 (328)
T d1rjda_         166 GRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPI  233 (328)
T ss_dssp             SSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred             CCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccC
Confidence            578889999887531         11222357777888888644  467887777764 5666666654

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=0.08  Score=44.72  Aligned_cols=72  Identities=13%  Similarity=0.087  Sum_probs=52.0

Q ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---CCCCchhhhe
Q 021344          167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH  242 (314)
Q Consensus       167 ~~~iLDiGcG~G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---~~~~~fD~V~  242 (314)
                      +.+|+|+-||.|.+...+...|...+ +.++|+++.+++..+.+.        ....++.+|+.++.   ++...+|+++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dll~   73 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC--------CCCCcccCchhhCCHhHcCCCCccEEE
Confidence            45899999999999988888775434 679999999888877653        34556777877653   2223578888


Q ss_pred             ecch
Q 021344          243 AGAA  246 (314)
Q Consensus       243 ~~~v  246 (314)
                      ...-
T Consensus        74 ggpP   77 (343)
T d1g55a_          74 MSPP   77 (343)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            6543

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=89.92  E-value=0.06  Score=34.25  Aligned_cols=26  Identities=27%  Similarity=0.713  Sum_probs=19.0

Q ss_pred             eeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      +.||.|+.+|....           +.+.|..|...|
T Consensus         3 ~~CP~C~~eL~~~~-----------~~~~C~~C~~~~   28 (71)
T d2jnea1           3 LHCPQCQHVLDQDN-----------GHARCRSCGEFI   28 (71)
T ss_dssp             CBCSSSCSBEEEET-----------TEEEETTTCCEE
T ss_pred             CcCCCccCcccccC-----------CCEehhhhhhhh
Confidence            57999999986643           467777776665

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.91  E-value=0.86  Score=36.93  Aligned_cols=104  Identities=18%  Similarity=0.234  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCC-HHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s-~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp---------  232 (314)
                      +++++|-.|++.|-   .+..|++.|.  +|+..|.+ ++.++...+.++..+    .++.++.+|+.+..         
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~~~~~   90 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG----SDAACVKANVGVVEDIVRMFEEA   90 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC----CceeeEeCCCCCHHHHHHHHHHH
Confidence            47889999988773   6777778776  89999876 566666666666654    68899999987632         


Q ss_pred             -CCCCchhhheecchhccCCC-------------------HHHHHHHHHhhcccCcEEEEEec
Q 021344          233 -FASGFVDAVHAGAALHCWPS-------------------PSNAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d-------------------~~~~l~~i~r~LkpGG~l~i~~~  275 (314)
                       -.-+..|+++.+........                   +....+.+.+.|+.+|.+++...
T Consensus        91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s  153 (272)
T d1g0oa_          91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  153 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence             01245677766544333221                   12356777788888777666543

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.57  E-value=0.062  Score=33.59  Aligned_cols=43  Identities=19%  Similarity=0.439  Sum_probs=26.2

Q ss_pred             ccccCCCCeeeccCCCccchhcCCCCccccccccCceecCCCCcc
Q 021344           52 QTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (314)
Q Consensus        52 ~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (314)
                      .+.......|.||.|++.....+..  ..-....+.+.|..|+..
T Consensus         6 ~rd~~~~~~y~Cp~C~~~ys~Lda~--~L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_           6 ERDSTNRASFKCPVCSSTFTDLEAN--QLFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SSSCCSSSEEECSSSCCEEEHHHHH--HHEETTTTEEBCSSSCCB
T ss_pred             hhccccCCceECCCCCCCcchhhHH--HhcCcCCCeEEecCCCCE
Confidence            3344456789999999964322211  111223478999999755

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.46  E-value=0.046  Score=35.23  Aligned_cols=30  Identities=17%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      ..+.||.|+..-....         ..+++.|..|+..|
T Consensus        26 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~kC~~~~   55 (73)
T d1jj2y_          26 KKHKCPVCGFKKLKRA---------GTGIWMCGHCGYKI   55 (73)
T ss_dssp             SCBCCSSSCCSCEEEE---------ETTEEEETTTCCEE
T ss_pred             CCccCCCCCCCceEEE---------EEEEEECCCCCCEE
Confidence            3567999997533222         12799999999886

>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Escherichia coli [TaxId: 562]

Probab=89.21  E-value=0.073  Score=29.05  Aligned_cols=24  Identities=42%  Similarity=0.905  Sum_probs=18.5

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCCCCccccC
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (314)
                      .||.|+.+-..              .-.|..||+.|..
T Consensus         4 ~CP~C~~~~a~--------------GDqCe~CG~~~~p   27 (35)
T d1pfva3           4 TCPKCKSPDQY--------------GDNCEVCGATYSP   27 (35)
T ss_dssp             ECTTTCCSSEE--------------TTBCTTTCCBCCG
T ss_pred             ECCCCCCcccc--------------cccHHHcCCcCCH
Confidence            59999997654              3469999998843

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=89.19  E-value=0.38  Score=41.74  Aligned_cols=51  Identities=10%  Similarity=0.092  Sum_probs=41.3

Q ss_pred             cCCCCeEEEEcCcccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcC
Q 021344          164 SAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDN  214 (314)
Q Consensus       164 ~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~  214 (314)
                      ..++..++|||+-.|.++..+++..  ...+|+++|+++...+..+++++...
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            4567899999999999887776542  23589999999999999998877543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.18  E-value=0.97  Score=36.44  Aligned_cols=78  Identities=15%  Similarity=0.209  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      +++++|-.|++.|   ..+..+++.|.  +|+.+|.++..++.+.+.+...+    ..+.++.+|+.+..          
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~----~~~~~~~~D~s~~~~~~~~~~~~~   78 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG----LNVEGSVCDLLSRTERDKLMQTVA   78 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CCceEEEeecCCHHHHHHHHHHHH
Confidence            5789999998876   35667777886  99999999998888888887765    67889999997632          


Q ss_pred             -CCCCchhhheecchhcc
Q 021344          233 -FASGFVDAVHAGAALHC  249 (314)
Q Consensus       233 -~~~~~fD~V~~~~vl~h  249 (314)
                       ..++..|+++.+..+.+
T Consensus        79 ~~~~g~idilinnag~~~   96 (258)
T d1ae1a_          79 HVFDGKLNILVNNAGVVI   96 (258)
T ss_dssp             HHTTSCCCEEEECCCCCC
T ss_pred             HHhCCCcEEEeccccccc
Confidence             11245777776544433

>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Pyrococcus abyssi [TaxId: 29292]

Probab=89.11  E-value=0.083  Score=28.84  Aligned_cols=25  Identities=24%  Similarity=0.733  Sum_probs=18.8

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCCCCccccCc
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (314)
                      .||.|+.+...              .-.|..||+.|...
T Consensus         4 ~CP~C~~~~a~--------------GDqCe~CG~~~~p~   28 (35)
T d1rqga3           4 TCPYCGAEDQK--------------GDQCEVCGRPLTPE   28 (35)
T ss_dssp             BCSSSCCSCCC--------------TTTCSSSCCCCCTT
T ss_pred             ECCCCCCCccc--------------CcchhhcCCccCHH
Confidence            59999987644              34699999887443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.77  E-value=1.1  Score=35.85  Aligned_cols=78  Identities=18%  Similarity=0.193  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      .|+.+|--|++.|-   ++..+++.|.  +|+.+|.+++.++...+.+...+    .++..+.+|+.+..          
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~~i~   79 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG----AKVHTFVVDCSNREDIYSSAKKVK   79 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHHHHH
Confidence            47788988998873   6778888887  99999999999888888887754    68999999998742          


Q ss_pred             CCCCchhhheecchhcc
Q 021344          233 FASGFVDAVHAGAALHC  249 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h  249 (314)
                      -..+..|+++.+..+.+
T Consensus        80 ~~~g~idilinnag~~~   96 (244)
T d1yb1a_          80 AEIGDVSILVNNAGVVY   96 (244)
T ss_dssp             HHTCCCSEEEECCCCCC
T ss_pred             HHcCCCceeEeeccccc
Confidence            12346787776655443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.75  E-value=0.84  Score=32.54  Aligned_cols=86  Identities=9%  Similarity=0.152  Sum_probs=54.1

Q ss_pred             eEEEEcCcc-cHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCCCchhhhe
Q 021344          169 LLVDVSCGS-GLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVH  242 (314)
Q Consensus       169 ~iLDiGcG~-G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~~~~~fD~V~  242 (314)
                      +|+=+|+|. |.. +..|.+.+.  +|+.+|.+++.++.+++.         .++.++.+|..+..    ..-+..|.++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~---------~~~~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC--CcceecCChhhhhhhhhh---------hhhhhccCcccchhhhhhcChhhhhhhc
Confidence            678888865 443 334445555  999999999988877653         35678999987632    1123566666


Q ss_pred             ecchhccCCCHH--HHHHHHHhhcccCcEE
Q 021344          243 AGAALHCWPSPS--NAVAEISRILRSGGVF  270 (314)
Q Consensus       243 ~~~vl~h~~d~~--~~l~~i~r~LkpGG~l  270 (314)
                      +.     ..+..  .+...+.+.+.+.-.+
T Consensus        71 ~~-----t~~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          71 AV-----TGKEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             EC-----CSCHHHHHHHHHHHHHTTCCCEE
T ss_pred             cc-----CCcHHHHHHHHHHHHHcCCceEE
Confidence            53     23332  3445566677777444

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=88.52  E-value=1.1  Score=36.12  Aligned_cols=75  Identities=17%  Similarity=0.263  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      +++++|-.|.+.|-   .+..|++.|.  +|+.+|.+++.++.+.+.++..+    .++..+.+|+.+..          
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~   77 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIGTVDSVV   77 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            57889999987763   5677787776  99999999999998888887755    67899999997632          


Q ss_pred             CCCCchhhheecch
Q 021344          233 FASGFVDAVHAGAA  246 (314)
Q Consensus       233 ~~~~~fD~V~~~~v  246 (314)
                      -.-+..|+++.+..
T Consensus        78 ~~~g~iDilVnnaG   91 (260)
T d1zema1          78 RDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHhCCCCeehhhhc
Confidence            01246887776533

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.26  E-value=0.36  Score=34.51  Aligned_cols=86  Identities=19%  Similarity=0.078  Sum_probs=56.9

Q ss_pred             CcccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCCCchhhheecchhccC
Q 021344          175 CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAGAALHCW  250 (314)
Q Consensus       175 cG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----~~~~~fD~V~~~~vl~h~  250 (314)
                      ||.|..+..+.+......++.+|.++...+..+.          .++.++.+|..+..    ..-++.+.+++..     
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----   70 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----------SGANFVHGDPTRVSDLEKANVRGARAVIVNL-----   70 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----------TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----------cCccccccccCCHHHHHHhhhhcCcEEEEec-----
Confidence            4557777777777555578999999998877765          57889999987632    1123455555421     


Q ss_pred             CCHH--HHHHHHHhhcccCcEEEEEec
Q 021344          251 PSPS--NAVAEISRILRSGGVFVGTTF  275 (314)
Q Consensus       251 ~d~~--~~l~~i~r~LkpGG~l~i~~~  275 (314)
                      ++..  ..+....+.+.|...++....
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          71 ESDSETIHCILGIRKIDESVRIIAEAE   97 (129)
T ss_dssp             SSHHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred             cchhhhHHHHHHHHHHCCCceEEEEEc
Confidence            2332  345555677888888777763

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=87.27  E-value=0.39  Score=34.40  Aligned_cols=90  Identities=11%  Similarity=0.037  Sum_probs=52.5

Q ss_pred             eEEEEcCcc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC----CCchhhhe
Q 021344          169 LLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----SGFVDAVH  242 (314)
Q Consensus       169 ~iLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~----~~~fD~V~  242 (314)
                      +++=+|+|. |. +...|.+.+.  +|+.+|.+++.++.+++          .....+.+|..+...-    -...|.|+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~--~vvvid~d~~~~~~~~~----------~~~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNAYAS----------YATHAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHHTTT----------TCSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC--eEEEecCcHHHHHHHHH----------hCCcceeeecccchhhhccCCccccEEE
Confidence            466677765 44 3444555565  99999999998887754          3456778898764311    12455544


Q ss_pred             ecchhccCCCH-HHHHHHHHhhcccCcEEEEEe
Q 021344          243 AGAALHCWPSP-SNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       243 ~~~vl~h~~d~-~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +...    .+. ...+-...+.+.+...++...
T Consensus        70 ~~~~----~~~~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          70 VAIG----ANIQASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             ECCC----SCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEcC----chHHhHHHHHHHHHHcCCCcEEeec
Confidence            3211    122 233444444455666766655

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=87.26  E-value=0.2  Score=38.64  Aligned_cols=105  Identities=13%  Similarity=0.146  Sum_probs=55.8

Q ss_pred             HHHHHhccCCCCeEEEEcC--c-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEe---cCCC
Q 021344          157 MAQEYFKSAQGGLLVDVSC--G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA---DVCR  230 (314)
Q Consensus       157 ~l~~~l~~~~~~~iLDiGc--G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~---d~~~  230 (314)
                      .+......+++.++|-+..  | .|..+..+++.. +.+++++--+.+..+...+.+++.+     .-..+.-   |..+
T Consensus        19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lG-----ad~vi~~~~~~~~~   92 (189)
T d1gu7a2          19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELG-----ATQVITEDQNNSRE   92 (189)
T ss_dssp             HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHT-----CSEEEEHHHHHCGG
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhcc-----ccEEEeccccchhH
Confidence            3444556677888888732  3 467777787764 3488877333222222223333332     1122222   1111


Q ss_pred             CC--------CCCCchhhheecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          231 LP--------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       231 lp--------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      ..        ...+.+|+|+-     .+.  ...+....+.|++||+++...
T Consensus        93 ~~~~v~~~~~~~g~~vdvv~D-----~vg--~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2          93 FGPTIKEWIKQSGGEAKLALN-----CVG--GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             GHHHHHHHHHHHTCCEEEEEE-----SSC--HHHHHHHHHTSCTTCEEEECC
T ss_pred             HHHHHHHHHhhccCCceEEEE-----CCC--cchhhhhhhhhcCCcEEEEEC
Confidence            10        01234666653     232  334678889999999998765

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=87.05  E-value=1.5  Score=34.85  Aligned_cols=100  Identities=17%  Similarity=0.167  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      +++++|-.|.+.|-   .+..+++.|.  +|+.+|.+++.++...+.+.       .+...+.+|+.+..          
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~   73 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLG-------ANGKGLMLNVTDPASIESVLEKIR   73 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHG-------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhC-------CCCcEEEEEecCHHHhhhhhhhhh
Confidence            46788888887763   5667777776  99999999988877766553       45778889987632          


Q ss_pred             CCCCchhhheecchhccCCCH-------------------HHHHHHHHhhcc--cCcEEEEEe
Q 021344          233 FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILR--SGGVFVGTT  274 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~-------------------~~~l~~i~r~Lk--pGG~l~i~~  274 (314)
                      -.-++.|+++.+....+....                   -.+.+.+.+.|+  .+|.++...
T Consensus        74 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~is  136 (243)
T d1q7ba_          74 AEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIG  136 (243)
T ss_dssp             HHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             cccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeec
Confidence            112468887765544333221                   124555556653  468777655

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=86.87  E-value=1.5  Score=35.27  Aligned_cols=78  Identities=13%  Similarity=0.204  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--------C-
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------F-  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--------~-  233 (314)
                      +++++|-.|.+.|-   .+..|++.|.  +|+.+|.+++.++.+.+.+...+    .++.++.+|+.+..        . 
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG----FKVEASVCDLSSRSERQELMNTVA   80 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CCceEEEeeCCCHHHHHHHHHHHH
Confidence            47889999988763   5677777776  99999999999988888877754    68889999987632        0 


Q ss_pred             -C-CCchhhheecchhcc
Q 021344          234 -A-SGFVDAVHAGAALHC  249 (314)
Q Consensus       234 -~-~~~fD~V~~~~vl~h  249 (314)
                       . .+..|+++.+..+.+
T Consensus        81 ~~~~~~idilvnnAG~~~   98 (259)
T d2ae2a_          81 NHFHGKLNILVNNAGIVI   98 (259)
T ss_dssp             HHTTTCCCEEEECCCCCC
T ss_pred             HHhCCCceEEEECCceec
Confidence             1 236888887655433

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.34  E-value=1.4  Score=35.24  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      +++.+|-.|.+.|-   .+..|++.|.  +|+.+|.+++.++.+.+.++..+    .++.++.+|+.+..          
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g----~~~~~~~~Dvt~~~~v~~~~~~~~   82 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG----YESSGYAGDVSKKEEISEVINKIL   82 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            47788888987762   4555666665  99999999999988888887755    67899999997632          


Q ss_pred             CCCCchhhheecchhc
Q 021344          233 FASGFVDAVHAGAALH  248 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~  248 (314)
                      -.-+..|+++.+....
T Consensus        83 ~~~g~iDilvnnag~~   98 (251)
T d2c07a1          83 TEHKNVDILVNNAGIT   98 (251)
T ss_dssp             HHCSCCCEEEECCCCC
T ss_pred             HhcCCceeeeeccccc
Confidence            1125688777655443

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.85  E-value=1.4  Score=35.35  Aligned_cols=76  Identities=24%  Similarity=0.286  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      +++++|-.|.+.|-   .+..|++.|.  +|+.+|.+++.++.+.+.++..+    .++.++.+|+.+...         
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g----~~~~~~~~Dvs~~~~~~~~~~~~~   83 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG----GQAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            47788988877653   4566666676  99999999999888888887765    678899999976320         


Q ss_pred             -CCCchhhheecchh
Q 021344          234 -ASGFVDAVHAGAAL  247 (314)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (314)
                       .-+..|+++.+..+
T Consensus        84 ~~~g~iDilvnnAG~   98 (255)
T d1fmca_          84 SKLGKVDILVNNAGG   98 (255)
T ss_dssp             HHHSSCCEEEECCCC
T ss_pred             HHcCCCCEeeeCCcC
Confidence             11468877765443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=84.87  E-value=2.5  Score=31.35  Aligned_cols=98  Identities=16%  Similarity=0.127  Sum_probs=55.5

Q ss_pred             CeEEEEcCcc-c-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecC---CCCCCCCCchhhhe
Q 021344          168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVH  242 (314)
Q Consensus       168 ~~iLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~---~~lp~~~~~fD~V~  242 (314)
                      ++|--||+|. | .++..|++.|.  +|+.+|.++..++..++.-....  ............   .+..-.-...|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIA--EGPGLAGTAHPDLLTSDIGLAVKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEE--ESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCch--hhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence            5788899998 3 35666777776  99999999988877765311100  000000000000   00000013477777


Q ss_pred             ecchhccCCCHHHHHHHHHhhcccCcEEEE
Q 021344          243 AGAALHCWPSPSNAVAEISRILRSGGVFVG  272 (314)
Q Consensus       243 ~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i  272 (314)
                      ..--   -.....+++++...|+++-.+++
T Consensus        78 i~v~---~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          78 IVVP---AIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             ECSC---GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEEc---hhHHHHHHHHhhhccCCCCEEEE
Confidence            5311   11246789999999999886654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=84.77  E-value=2.3  Score=33.98  Aligned_cols=78  Identities=19%  Similarity=0.227  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      +++++|-.|++.|-   .+..|++.|.  +|+.+|.+++.++.+.+.+...+  ...++..+.+|+.+...         
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~~~Dvt~~~~v~~~~~~~~   78 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETA--PDAEVLTTVADVSDEAQVEAYVTATT   78 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHC--TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC--CCCeEEEEeccCCCHHHHHHHHHHHH
Confidence            46789999988763   6777888886  99999999998888777666544  23578899999976320         


Q ss_pred             -CCCchhhheecchh
Q 021344          234 -ASGFVDAVHAGAAL  247 (314)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (314)
                       .-+..|+++.+..+
T Consensus        79 ~~~G~iDiLVnnAG~   93 (258)
T d1iy8a_          79 ERFGRIDGFFNNAGI   93 (258)
T ss_dssp             HHHSCCSEEEECCCC
T ss_pred             HHhCCCCEEEECCcc
Confidence             12468888765443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=84.53  E-value=3.7  Score=32.32  Aligned_cols=102  Identities=23%  Similarity=0.228  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      +++++|-.|++.|-   .+..|++.|.  +|+.++.+...++...+   +.    ..++.++.+|+.+..-         
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~---~~----~~~~~~~~~Dls~~~~i~~~~~~i~   74 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVA---AL----EAEAIAVVADVSDPKAVEAVFAEAL   74 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHH---TC----CSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHH---Hc----CCceEEEEecCCCHHHHHHHHHHHH
Confidence            47889999988763   6677777776  99999999977655444   22    2678889999976320         


Q ss_pred             -CCCchhhheecchhccCCCH-------------------HHHHHHHHhhcccCcEEEEEecc
Q 021344          234 -ASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILRSGGVFVGTTFL  276 (314)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~-------------------~~~l~~i~r~LkpGG~l~i~~~~  276 (314)
                       .-++.|+++.+....+....                   ..+.+.+...++.++.+++....
T Consensus        75 ~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~  137 (241)
T d2a4ka1          75 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV  137 (241)
T ss_dssp             HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred             HHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc
Confidence             11468887776555443321                   12456667778888777665543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.23  E-value=1.7  Score=35.18  Aligned_cols=77  Identities=19%  Similarity=0.202  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      +++++|-.|++.|-   .+..|++.|.  +|+.+|.+++.++.+.+.+...+. ...++..+.+|+.+..          
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~   80 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGV-SEKQVNSVVADVTTEDGQDQIINSTL   80 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTC-CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC-CCCceEEEEccCCCHHHHHHHHHHHH
Confidence            47789999988763   5677777776  999999999999988888776542 2346899999997632          


Q ss_pred             CCCCchhhheecc
Q 021344          233 FASGFVDAVHAGA  245 (314)
Q Consensus       233 ~~~~~fD~V~~~~  245 (314)
                      -.-+..|+++.+.
T Consensus        81 ~~~g~iDilvnnA   93 (272)
T d1xkqa_          81 KQFGKIDVLVNNA   93 (272)
T ss_dssp             HHHSCCCEEEECC
T ss_pred             HHhCCceEEEeCC
Confidence            0124578777653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.13  E-value=2  Score=34.49  Aligned_cols=78  Identities=14%  Similarity=0.165  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--------C-
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------F-  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp--------~-  233 (314)
                      +++++|-.|++.|-   .+..|++.|.  +|+.+|.+++.++.+.+.+...+    .++..+.+|+.+..        . 
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG----FQVTGSVCDASLRPEREKLMQTVS   80 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CceEEEeccCCCHHHHHHHHHHHH
Confidence            47889999988764   6677777776  99999999998888888777654    67999999997532        0 


Q ss_pred             C--CCchhhheecchhcc
Q 021344          234 A--SGFVDAVHAGAALHC  249 (314)
Q Consensus       234 ~--~~~fD~V~~~~vl~h  249 (314)
                      .  .+..|+++.+..+.+
T Consensus        81 ~~~~g~idilvnnAG~~~   98 (259)
T d1xq1a_          81 SMFGGKLDILINNLGAIR   98 (259)
T ss_dssp             HHHTTCCSEEEEECCC--
T ss_pred             HHhCCCcccccccccccC
Confidence            0  256888887655433

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=84.11  E-value=2.7  Score=33.46  Aligned_cols=75  Identities=21%  Similarity=0.246  Sum_probs=55.4

Q ss_pred             CCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------C
Q 021344          167 GGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------F  233 (314)
Q Consensus       167 ~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------~  233 (314)
                      ++.+|--|++.|-   .+..|++.|.  +|+.+|.+++.++...+.++..+    .++.++.+|+.+..          -
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g----~~~~~~~~Dvs~~~~v~~~~~~~~~   75 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG----VEADGRTCDVRSVPEIEALVAAVVE   75 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeecCCHHHHHHHHHHHHH
Confidence            4566888877653   5667777776  99999999999988888887755    68999999997642          0


Q ss_pred             CCCchhhheecchh
Q 021344          234 ASGFVDAVHAGAAL  247 (314)
Q Consensus       234 ~~~~fD~V~~~~vl  247 (314)
                      .-++.|+++.+..+
T Consensus        76 ~~g~iDilVnnAG~   89 (257)
T d2rhca1          76 RYGPVDVLVNNAGR   89 (257)
T ss_dssp             HTCSCSEEEECCCC
T ss_pred             HhCCCCEEEecccc
Confidence            12468888765444

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.92  E-value=2.1  Score=34.44  Aligned_cols=75  Identities=17%  Similarity=0.286  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      +++.+|-.|++.|-   .+..|++.|.  +|+.+|.+++.++.+.+.+...     ..+.++.+|+.+..          
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~   77 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP-----DVISFVHCDVTKDEDVRNLVDTTI   77 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCC-----CceEEEEccCCCHHHHHHHHHHHH
Confidence            57889999988763   5666777776  9999999998888777766542     46888999987632          


Q ss_pred             CCCCchhhheecchh
Q 021344          233 FASGFVDAVHAGAAL  247 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl  247 (314)
                      -.-+..|+++.+..+
T Consensus        78 ~~~g~iD~lVnnAG~   92 (268)
T d2bgka1          78 AKHGKLDIMFGNVGV   92 (268)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCcceecccccc
Confidence            012467888865543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.86  E-value=0.85  Score=31.63  Aligned_cols=89  Identities=13%  Similarity=0.076  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCcccH--HHHHHHHhCCCCeEEEEe--CCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCCCchhhh
Q 021344          166 QGGLLVDVSCGSGL--FSRKFAKSGTYSGVVALD--FSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (314)
Q Consensus       166 ~~~~iLDiGcG~G~--~~~~l~~~~~~~~v~giD--~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~~~~~fD~V  241 (314)
                      .+++||-||.|.-.  -++.+.+.+.  +++.++  .++.....+.+          .++.+.........+.  .+|+|
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga--~v~v~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~dl~--~~~lv   76 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA--RLTVNALTFIPQFTVWANE----------GMLTLVEGPFDETLLD--SCWLA   76 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB--EEEEEESSCCHHHHHHHTT----------TSCEEEESSCCGGGGT--TCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeccCChHHHHHHhc----------CCceeeccCCCHHHhC--CCcEE
Confidence            57899999999833  4555666666  666554  45544443322          5678887666543322  35555


Q ss_pred             eecchhccCCCHHHHHHHHHhhcccCcEEEEEe
Q 021344          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      +...      +....-+++.+..|+-|+++=..
T Consensus        77 ~~at------~d~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          77 IAAT------DDDTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             EECC------SCHHHHHHHHHHHHHTTCEEEET
T ss_pred             eecC------CCHHHHHHHHHHHHHcCCEEEeC
Confidence            5432      23344557777788888886433

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.45  E-value=1.9  Score=34.91  Aligned_cols=78  Identities=22%  Similarity=0.234  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC---------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp~---------  233 (314)
                      +++++|-.|++.|-   .+..|++.|.  +|+.+|.+++.++.+.+.+...+. ...++..+.+|+.+..-         
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~   79 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGV-PAEKINAVVADVTEASGQDDIINTTL   79 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC-CCcceEEEEeeCCCHHHHHHHHHHHH
Confidence            47788999988763   5677777776  999999999998888887776542 23478999999876320         


Q ss_pred             -CCCchhhheecch
Q 021344          234 -ASGFVDAVHAGAA  246 (314)
Q Consensus       234 -~~~~fD~V~~~~v  246 (314)
                       .-++.|+++.+..
T Consensus        80 ~~~G~iDilVnnAG   93 (274)
T d1xhla_          80 AKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCceEEEeecc
Confidence             1246788776543

>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Vacuolar protein-sorting-associated protein 36, VPS36
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=83.44  E-value=0.4  Score=27.35  Aligned_cols=32  Identities=22%  Similarity=0.436  Sum_probs=18.6

Q ss_pred             CeeeccCCCccchhcCCCCccccccccCceecCCCC
Q 021344           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD   94 (314)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~   94 (314)
                      ..+.||+|.........-..+    ......|.+||
T Consensus         2 s~W~CPICm~~Ne~~~e~~~n----~~~~p~C~nCG   33 (47)
T d2j9ub1           2 STWVCPICMVSNETQGEFTKD----TLPTPICINCG   33 (47)
T ss_dssp             EEEECTTTCCEEEESSCCCTT----CSSCCBCTTTC
T ss_pred             cceecceeeeeccceeeeccC----CCCCCcccccC
Confidence            357899998865443321111    11456788886

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.98  E-value=0.53  Score=30.19  Aligned_cols=31  Identities=19%  Similarity=0.490  Sum_probs=22.6

Q ss_pred             CCeeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .+.--||.|+.........         ..+.|+.|+..|
T Consensus        16 ~~~k~CP~C~~~~~~~~~~---------~~~~C~~C~~~f   46 (73)
T d2ct7a1          16 PKFLWCAQCSFGFIYEREQ---------LEATCPQCHQTF   46 (73)
T ss_dssp             CCEECCSSSCCCEECCCSC---------SCEECTTTCCEE
T ss_pred             CCCCCCCCCCCEeEECCCC---------CEEEcCCCCCeE
Confidence            3466799999987654321         568898898887

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.41  E-value=0.27  Score=27.10  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=20.5

Q ss_pred             eccCCCccchhcCCCCccccccccCceecCCCCccccC
Q 021344           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (314)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (314)
                      .|+.|+++.....      .+.....++|..||..-+.
T Consensus         3 ~C~~C~spDT~l~------ke~R~~~l~C~aCGa~r~V   34 (37)
T d1neea2           3 ICHECNRPDTRII------REGRISLLKCEACGAKAPL   34 (37)
T ss_dssp             HHTCCSSCSSCCE------EETTTTEEECSTTSCCCCS
T ss_pred             ECCCCCCCCCEEE------EcCCEEEEEeccCCCCccc
Confidence            5999999853211      0112357899999976544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.29  E-value=2.2  Score=34.20  Aligned_cols=78  Identities=19%  Similarity=0.153  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      +++.+|-.|++.|-   .+..|++.|.  +|+.+|.+++.++.+.+.+...+. ...++.++.+|+.+..          
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~~Dvt~~~~v~~~~~~~~   80 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGV-SEQNVNSVVADVTTDAGQDEILSTTL   80 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC-CcCceEEEEccCCCHHHHHHHHHHHH
Confidence            46788888887763   5667777776  999999999998888887766542 2246899999997632          


Q ss_pred             CCCCchhhheecch
Q 021344          233 FASGFVDAVHAGAA  246 (314)
Q Consensus       233 ~~~~~fD~V~~~~v  246 (314)
                      -.-++.|+++.+..
T Consensus        81 ~~~g~iDilvnnAG   94 (264)
T d1spxa_          81 GKFGKLDILVNNAG   94 (264)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHhCCCCEeecccc
Confidence            01246787776543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.48  E-value=1.6  Score=33.38  Aligned_cols=103  Identities=16%  Similarity=0.235  Sum_probs=59.6

Q ss_pred             CeEEEEcCcc-c-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-------CCCCCCCe----EEEEecCCCCCCC
Q 021344          168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-------NTILTSNL----ALVRADVCRLPFA  234 (314)
Q Consensus       168 ~~iLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~~~~~~v----~~~~~d~~~lp~~  234 (314)
                      .+|--||+|+ | .++..++..|.  +|+.+|.+++.++.++++++..       +.  ....    .........+...
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~i~~~   80 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKF--AENPKAGDEFVEKTLSTIATS   80 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhh--hccchhhHHHHHHHHhhcccc
Confidence            4789999998 4 35666677776  9999999999998888766532       10  0000    0000000001111


Q ss_pred             CCchhhhe-ecchhccCCC----HHHHHHHHHhhcccCcEEEEEe
Q 021344          235 SGFVDAVH-AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT  274 (314)
Q Consensus       235 ~~~fD~V~-~~~vl~h~~d----~~~~l~~i~r~LkpGG~l~i~~  274 (314)
                      .+..|.+- +..++|.+++    ..++++++.+.++++.+|...+
T Consensus        81 ~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT  125 (192)
T d1f0ya2          81 TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT  125 (192)
T ss_dssp             SCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECC
T ss_pred             chhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccC
Confidence            11122221 2344555443    3578999999999998886655

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=81.30  E-value=3.7  Score=32.58  Aligned_cols=72  Identities=19%  Similarity=0.295  Sum_probs=52.7

Q ss_pred             eEEEEcCcccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------CCC
Q 021344          169 LLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------FAS  235 (314)
Q Consensus       169 ~iLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------~~~  235 (314)
                      .+|-.|++.|-   .+..|++.|.  +|+.+|.+++.++...+.+...+    .++..+.+|+.+..          -.-
T Consensus         3 ValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG----GHAVAVKVDVSDRDQVFAAVEQARKTL   76 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            35777877653   5667777776  99999999999988888777755    68889999997632          012


Q ss_pred             Cchhhheecch
Q 021344          236 GFVDAVHAGAA  246 (314)
Q Consensus       236 ~~fD~V~~~~v  246 (314)
                      ++.|+++.+..
T Consensus        77 g~iDilVnnAG   87 (255)
T d1gega_          77 GGFDVIVNNAG   87 (255)
T ss_dssp             TCCCEEEECCC
T ss_pred             CCccEEEeccc
Confidence            56888876543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=81.20  E-value=2.7  Score=34.06  Aligned_cols=78  Identities=18%  Similarity=0.203  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCccc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----------
Q 021344          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (314)
Q Consensus       166 ~~~~iLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~lp----------  232 (314)
                      +++++|-.|++.|   ..+..|++.|.  +|+.+|.+...++.+.+.+....   ..++.++.+|+.+..          
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~---g~~~~~~~~D~~~~~~v~~~~~~~~   98 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT---GNKVHAIQCDVRDPDMVQNTVSELI   98 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc---CCceEEEEecccChHHHHHHhhhhh
Confidence            5789999998876   46677777776  99999999988776665554332   267888999987632          


Q ss_pred             CCCCchhhheecchhc
Q 021344          233 FASGFVDAVHAGAALH  248 (314)
Q Consensus       233 ~~~~~fD~V~~~~vl~  248 (314)
                      ...+..|+++.+....
T Consensus        99 ~~~g~iDilvnnAg~~  114 (294)
T d1w6ua_          99 KVAGHPNIVINNAAGN  114 (294)
T ss_dssp             HHTCSCSEEEECCCCC
T ss_pred             hhccccchhhhhhhhc
Confidence            1135678777655443

>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: RNA polymerase subunits
family: RBP12 subunit of RNA polymerase II
domain: RBP12 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.79  E-value=0.42  Score=27.51  Aligned_cols=28  Identities=18%  Similarity=0.578  Sum_probs=21.8

Q ss_pred             eeeccCCCccchhcCCCCccccccccCceecCCCCccc
Q 021344           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (314)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (314)
                      .+.|-.|+........          ..++|..||+.-
T Consensus         4 ~YiCgeCg~~~~l~~~----------d~irCreCG~RI   31 (46)
T d1twfl_           4 KYICAECSSKLSLSRT----------DAVRCKDCGHRI   31 (46)
T ss_dssp             CEECSSSCCEECCCTT----------STTCCSSSCCCC
T ss_pred             EEEcccCCCceEeCCC----------CcEEeccCCcEE
Confidence            4789999998765443          689999998764