Citrus Sinensis ID: 021348

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MPVNRTTRTPSNTTYPKASVFRLPKDKHTDIAMSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSGTRSTAPSAEQPETNTTIPSEQPNATAGGVAFRGRSYRLDGR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEEccHHHHHcccEEEEEEEEEEcccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccEEEEEEEEEccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHccccHccHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccEEccccEEcccc
Coil and Loop (DISEMBL)
mpvnrttrtpsnttypkasvfrlpkdkhtdiamstpaeyynslppvsktYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNffflgpfsFRFAFRLIIIAKYgvslergpfdkrTADYLWMLMFGALSLLVMaaipplrtpfmgpsLVFMMVYIWGrefpnariSIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTVlhplaggkyifktPLFVHKLVAFwgegtqvnspvprnpqagvafrgrsyslsgtrstapsaeqpetnttipseqpnataggvafrgrsyrldgr
Flexible Loop (DISEMBL)
mpvnrttrtpsnttypkasvfrlpkdkHTDIAMSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKygvslergpfDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSGTrstapsaeqpetnttipseqpnataggvafrgrsyrldgr
Low Complexity Region (SEG)
MPVNRTTRTPSNTTYPKASVFRLPKDKHTDIAMSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSGTRSTAPSAEQPETNTTIPSEQPNATAGGVAFRGRSYRLDGR
Disordered region (IsUnstruct)
***********************************PAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQ*****************************************************************
Disordered Region (DISOPRED)
*********************************STPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWG*********************************************************************
Disordered Region (DISEMBL)
************TTYPKASVFRLPKDKHTDIAMSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRS**********************PSEQPNATAGGVAFRGRSYRLDGR
Disordered Region (DISPRO)
****************KASVFRLPKD**TDIAMSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWG****VNS********************************************************Y*L***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPVNRTTRTPSNTTYPKASVFRLPKDKHTDIAMSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSGTRSTAPSAEQPETNTTIPSEQPNATAGGVAFRGRSYRLDGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q06397	242	Derlin-1 OS=Oryza sativa	yes	no	0.763	0.987	0.580	5e-77
Q8VZU9	266	Derlin-1 OS=Arabidopsis t	yes	no	0.843	0.992	0.539	5e-77
Q4G2J5	243	Derlin-1.2 OS=Zea mays GN	N/A	no	0.763	0.983	0.578	3e-76
Q4G2J6	243	Derlin-1.1 OS=Zea mays GN	N/A	no	0.763	0.983	0.561	2e-74
Q8BNI4	239	Derlin-2 OS=Mus musculus	yes	no	0.731	0.958	0.350	2e-36
Q5RC74	239	Derlin-2 OS=Pongo abelii	yes	no	0.731	0.958	0.350	3e-36
Q9GZP9	239	Derlin-2 OS=Homo sapiens	yes	no	0.731	0.958	0.350	3e-36
Q54NN1	254	Probable derlin-2 homolog	yes	no	0.664	0.818	0.359	6e-34
Q851X7	249	Derlin-2 OS=Oryza sativa	no	no	0.712	0.895	0.336	9e-34
Q4G2J4	249	Derlin-2.1 OS=Zea mays GN	N/A	no	0.712	0.895	0.331	2e-33

>sp|Q06397|DERL1_ORYSJ Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2

 Score =  288 bits (736), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 140/241 (58%), Positives = 183/241 (75%), Gaps = 2/241 (0%)

Query: 33  MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
           MS+PAEYYNSLPP+SK YG  C  AT    LQ+ NP  +AL Y  V K+FQ+WR+ T+FF
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFF 60

Query: 93  FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
           FLG FS  F  RL++IA+YGV LE+G F+KRTAD+LWM++FGA+SLL ++AIP L   F+
Sbjct: 61  FLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDIYFL 120

Query: 153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
           G  +V M++Y+W RE+PN++IS+YG+V L+ FYLPWAML L++IFG+ +LP +LG++ GH
Sbjct: 121 GVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGH 180

Query: 213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPV-PRNPQAGV-AFRGRSYSL 270
            YYFL+VLHPLA GK   KTP++VHK+VA +  G Q N+PV P     G  AFRGRSY L
Sbjct: 181 TYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVRPAAANTGSGAFRGRSYRL 240

Query: 271 S 271
           S
Sbjct: 241 S 241

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VZU9|DERL1_ARATH Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1

 Score =  288 bits (736), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 150/278 (53%), Positives = 198/278 (71%), Gaps = 14/278 (5%)

Query: 33  MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
           MS+P E+YNSLPP++K YG  C   T A  L L  P +IAL  E V+K+FQ+WR++TN F
Sbjct: 1   MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60

Query: 93  FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
           FLG FS  F  RL++IA+YGV LE+GPF++RTAD+LWM++FG+ +LLV++ IP   TPF+
Sbjct: 61  FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFL 120

Query: 153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
           G SLVFM++Y+W REFPNA IS+YG+V+LK FYLPWAMLAL++IFG+P++P +LG++AGH
Sbjct: 121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query: 213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
           LYYFLTVLHPLA GK   KTP +V+K+VA W  G  V S V +    G A  G    + G
Sbjct: 181 LYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVAS-VRQAGGVGAAGPGAGGGVGG 239

Query: 273 TRSTAPSAEQPETNTTIPSEQPNATAGGVAFRGRSYRL 310
             + + +   PE++ T             AFRGRSYRL
Sbjct: 240 GGAYSSARAPPESSNT-------------AFRGRSYRL 264

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4G2J5|DER12_MAIZE Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 140/242 (57%), Positives = 179/242 (73%), Gaps = 3/242 (1%)

Query: 33  MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
           MS+PAEYY SLPP+SK YG  C   T    L + NP  + L Y  V K+F+VWR+ T+FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFF 60

Query: 93  FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
           FLGPFS  F  RL++IA+YGV LE+G FDKRTAD+LWM++FGA+SLLV++ IP L T  +
Sbjct: 61  FLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSVIPQLNTYVL 120

Query: 153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
           G  +V M+VY+W RE PNA+I+IYG++ LK FYLPW ML L++IFG+PL+P +LG++ GH
Sbjct: 121 GLPMVSMLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGH 180

Query: 213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPV--PRNPQAGV-AFRGRSYS 269
           LYY+  VLHPLA GK   KTP +VHK+VA +  G Q N+PV  P N  AG  AFRGRSY 
Sbjct: 181 LYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVRAPANGNAGTGAFRGRSYR 240

Query: 270 LS 271
           L+
Sbjct: 241 LN 242

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q4G2J6|DER11_MAIZE Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2

 Score =  279 bits (713), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/242 (56%), Positives = 180/242 (74%), Gaps = 3/242 (1%)

Query: 33  MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
           MS+PAEYY SLPP+SK YG  C   T    LQ+ +P  + L Y  V K+F++WR++T+FF
Sbjct: 1   MSSPAEYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFF 60

Query: 93  FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
           FL PFS +F  RL++IA+YGV LE+G FDKRTAD+LWM++FGA+SLLV++ IP   + F+
Sbjct: 61  FLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSIIPLFNSFFL 120

Query: 153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
           G  +V M++Y+W RE PNA+I+IYG+V L+ FYLPWAML L++IFG+ L+P +LG++ GH
Sbjct: 121 GIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGH 180

Query: 213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPV--PRNPQAGVA-FRGRSYS 269
           LYYF  VLHPLA GK   KTP +VHK+VA +  G Q NSPV  P N  +G   FRGRSY 
Sbjct: 181 LYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVRPPANGNSGSGVFRGRSYR 240

Query: 270 LS 271
           L+
Sbjct: 241 LN 242

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q8BNI4|DERL2_MOUSE Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 5/234 (2%)

Query: 40  YNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSF 99
           Y  +PPVS+ Y  AC++ TAA  L+L  P  +    E + K FQ+WR++TNF F GP  F
Sbjct: 10  YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query: 100 RFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFM 159
            F F +I + +Y   LE G F  RTAD+++M +FG   + +      L   F+G +   M
Sbjct: 70  NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLV--FLGQAFTIM 127

Query: 160 MVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTV 219
           +VY+W R  P  R++ +G+++ +  +LPW ++   L+ GN ++  +LG+  GH+Y+FL  
Sbjct: 128 LVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLED 187

Query: 220 LHPLA-GGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
           + P   GG  I KTP  +  +     E    N P+P     G A+ G    L G
Sbjct: 188 IFPNQPGGIRILKTPSILRTIFDTPDEDPNYN-PLPEERPGGFAW-GEGQRLGG 239

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Mus musculus (taxid: 10090)

>sp|Q5RC74|DERL2_PONAB Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1

 Score =  152 bits (384), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 5/234 (2%)

Query: 40  YNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSF 99
           Y  +PPVS+ Y  AC++ TAA  L+L  P  +    E + K FQ+WR++TNF F GP  F
Sbjct: 10  YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query: 100 RFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFM 159
            F F +I + +Y   LE G F  RTAD+++M +FG   + +      L   F+G +   M
Sbjct: 70  NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLV--FLGQAFTIM 127

Query: 160 MVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTV 219
           +VY+W R  P  R++ +G+++ +  +LPW ++   L+ GN ++  +LG+  GH+Y+FL  
Sbjct: 128 LVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLED 187

Query: 220 LHPLA-GGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
           + P   GG  I KTP  +  +     E    N P+P     G A+ G    L G
Sbjct: 188 VFPNQPGGIRILKTPSILKAIFDTPDEDPNYN-PLPEERPGGFAW-GEGQRLGG 239

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Pongo abelii (taxid: 9601)

>sp|Q9GZP9|DERL2_HUMAN Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1

 Score =  152 bits (384), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 5/234 (2%)

Query: 40  YNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSF 99
           Y  +PPVS+ Y  AC++ TAA  L+L  P  +    E + K FQ+WR++TNF F GP  F
Sbjct: 10  YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query: 100 RFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFM 159
            F F +I + +Y   LE G F  RTAD+++M +FG   + +      L   F+G +   M
Sbjct: 70  NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLV--FLGQAFTIM 127

Query: 160 MVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTV 219
           +VY+W R  P  R++ +G+++ +  +LPW ++   L+ GN ++  +LG+  GH+Y+FL  
Sbjct: 128 LVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLED 187

Query: 220 LHPLA-GGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
           + P   GG  I KTP  +  +     E    N P+P     G A+ G    L G
Sbjct: 188 VFPNQPGGIRILKTPSILKAIFDTPDEDPNYN-PLPEERPGGFAW-GEGQRLGG 239

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate. In contrast to DERL1, it is not involved in the degradation of MHC class I heavy chains following infection by cytomegaloviruses. May play a role in cell proliferation.

Homo sapiens (taxid: 9606)

>sp|Q54NN1|DERL2_DICDI Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1

 Score =  145 bits (365), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 118/214 (55%), Gaps = 6/214 (2%)

Query: 33  MSTPAE-YYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNF 91
           M+ P E +Y +LP V+K Y   C++ + + YL L  P  + L +  V  +++ WR+ TNF
Sbjct: 1   MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNF 60

Query: 92  FFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAI-----PP 146
           FF       F F +  + ++   LE   F  R+ADYL+M +FG+  LL+M A        
Sbjct: 61  FFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAFLFYTKIV 120

Query: 147 LRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAIL 206
            +  F+ PS+ FM++Y+W R  PN  IS  G+ +    YLPW +L +  +F + L   +L
Sbjct: 121 TKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLL 180

Query: 207 GMVAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLV 240
           G VAGH YYFL   +PL   + + KTP F+  L+
Sbjct: 181 GAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNLM 214

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q851X7|DERL2_ORYSJ Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1

 Score =  144 bits (363), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 15/238 (6%)

Query: 38  EYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPF 97
           E+Y  +P ++++Y  A ++ T    L++ +P ++ L  + V++ +++WR+VTNF +    
Sbjct: 7   EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKM 66

Query: 98  SFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSL----LVMAAIPPL-----R 148
              F F +  +A+Y   LE   F  RTAD+ +ML+FGA  L    L+   IP +     R
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFAR 126

Query: 149 TPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGM 208
             F+  SL FMMVY+W +  P   +S  G+ +    YLPW +L   ++ G+     +LGM
Sbjct: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186

Query: 209 VAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGR 266
           +AGH+YYFL  ++P   G+   KTP F+  L A        N  V R P AG+    R
Sbjct: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA------DDNVVVARPPNAGLGAGAR 238

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4G2J4|DER21_MAIZE Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 15/238 (6%)

Query: 38  EYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPF 97
           E+Y  +P ++++Y  A ++ T    L++ +P ++ L  + V++ +++WR+VTNF +    
Sbjct: 7   EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKM 66

Query: 98  SFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSL----LVMAAIPPL-----R 148
              F F +  +A+Y   LE   F  RTAD+ +ML+FGA  L    L+   IP +     R
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFAR 126

Query: 149 TPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGM 208
             F+  SL FMMVY+W +  P   +S  G+ +    YLPW +L   ++ G+     +LGM
Sbjct: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186

Query: 209 VAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGR 266
           +AGH+YYFL  ++P   G+   KTP F+  L A        N  V + P AG+    R
Sbjct: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA------DDNVVVAQPPNAGIGAGAR 238

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
255588641	277	Derlin-2, putative [Ricinus communis] gi	0.884	1.0	0.775	1e-122
224129892	276	predicted protein [Populus trichocarpa]	0.881	1.0	0.754	1e-119
356517762	281	PREDICTED: derlin-1-like [Glycine max]	0.894	0.996	0.718	1e-116
449458345	285	PREDICTED: derlin-1.1-like isoform 2 [Cu	0.878	0.964	0.729	1e-114
356508198	281	PREDICTED: derlin-1-like [Glycine max]	0.894	0.996	0.722	1e-114
225466022	276	PREDICTED: derlin-1.1-like [Vitis vinife	0.881	1.0	0.725	1e-113
449458343	291	PREDICTED: derlin-1.1-like isoform 1 [Cu	0.862	0.927	0.724	1e-112
147857173	281	hypothetical protein VITISV_027074 [Viti	0.891	0.992	0.700	1e-110
297745056	327	unnamed protein product [Vitis vinifera]	0.862	0.825	0.72	1e-110
359490158	273	PREDICTED: LOW QUALITY PROTEIN: derlin-1	0.865	0.992	0.717	1e-110

>gi|255588641|ref|XP_002534670.1| Derlin-2, putative [Ricinus communis] gi|223524794|gb|EEF27712.1| Derlin-2, putative [Ricinus communis]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/281 (77%), Positives = 246/281 (87%), Gaps = 4/281 (1%)

Query: 33  MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
           MSTPAEYYNSLPPVSKTYGVACLM TAA+YL LY+  NIAL YEDVIKRFQ+WR+++NFF
Sbjct: 1   MSTPAEYYNSLPPVSKTYGVACLMTTAAYYLGLYDVWNIALFYEDVIKRFQIWRLISNFF 60

Query: 93  FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
           FLGPFSF FAFRLIIIA+YGVSLERG FDKRTAD++WM  FGALSLL MAAIP L +PFM
Sbjct: 61  FLGPFSFPFAFRLIIIARYGVSLERGTFDKRTADFVWMFFFGALSLLAMAAIPMLWSPFM 120

Query: 153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
           G SLVFM+VYIW REFPNARI+IYG+VSLKGFYLPWAMLAL+LIFGNPL P ILGMVAGH
Sbjct: 121 GVSLVFMIVYIWSREFPNARINIYGLVSLKGFYLPWAMLALDLIFGNPLKPDILGMVAGH 180

Query: 213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
           +YYFLTVLHPL+GGK++ KTP +VHKLVAFWG+GTQ+NSPV R+P AGVAFRGRS+ L+G
Sbjct: 181 IYYFLTVLHPLSGGKFVLKTPFWVHKLVAFWGKGTQINSPVQRDPSAGVAFRGRSFRLNG 240

Query: 273 TRSTAPSAEQPETNTTIPSEQPNATAGGVAFRGRSYRLDGR 313
           TR T P+    E   T P++QPN +A GVAFRGRSYRL G 
Sbjct: 241 TR-TNPAE---EAQGTTPAQQPNESADGVAFRGRSYRLGGH 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129892|ref|XP_002328829.1| predicted protein [Populus trichocarpa] gi|222839127|gb|EEE77478.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/281 (75%), Positives = 241/281 (85%), Gaps = 5/281 (1%)

Query: 33  MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
           MSTP EYY SLPPVSK YGVACLM TAA+YL LY   +IAL Y+DVIKRFQVWR++TNFF
Sbjct: 1   MSTPGEYYRSLPPVSKAYGVACLMTTAAYYLGLYQASSIALYYDDVIKRFQVWRLITNFF 60

Query: 93  FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
           FLGPFSF FAFRLIIIA+YGV LERGPFDKRTAD++WM  FGALSLLVMAA+P L + FM
Sbjct: 61  FLGPFSFPFAFRLIIIARYGVQLERGPFDKRTADFVWMFFFGALSLLVMAAVPFLWSGFM 120

Query: 153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
           G SLVFM+VYIWGREFPNA++SIYG+VSLKGFYLPWAMLAL+LIFG+PL+P ILGM+AGH
Sbjct: 121 GVSLVFMLVYIWGREFPNAQVSIYGLVSLKGFYLPWAMLALDLIFGDPLMPDILGMLAGH 180

Query: 213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
           LYYFLTVLHPL+GGK+IFKTP++VHKLVAFWGEGTQVN+PV R+P AG AFRGRSY L+G
Sbjct: 181 LYYFLTVLHPLSGGKFIFKTPIWVHKLVAFWGEGTQVNAPVQRDPSAGTAFRGRSYRLNG 240

Query: 273 TRSTAPSAEQPETNTTIPSEQPNATAGGVAFRGRSYRLDGR 313
           TR+   SA Q + N   P  Q   +  GVAFRGR YRL G+
Sbjct: 241 TRNN--SAGQAQEN---PQTQQPDSNNGVAFRGRGYRLGGQ 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517762|ref|XP_003527555.1| PREDICTED: derlin-1-like [Glycine max]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/281 (71%), Positives = 239/281 (85%), Gaps = 1/281 (0%)

Query: 33  MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
           MSTPAEYY SLPPVSKTYGVACLM T+A+YLQLY+ +NIAL Y  V K  QVWR++TNFF
Sbjct: 1   MSTPAEYYRSLPPVSKTYGVACLMTTSAYYLQLYDARNIALDYGPVFKSLQVWRLITNFF 60

Query: 93  FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
           FLG FS  FA RLI+IAKYGVSLERGPFDKRTADY+WM +FGA SLLV+AA+P    PFM
Sbjct: 61  FLGSFSLPFAVRLIMIAKYGVSLERGPFDKRTADYVWMFIFGAFSLLVIAAVPFFWYPFM 120

Query: 153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
           G SLVFM+VY+W REFPNARI+IYGVVSLKGFYLPWA+LAL+LIFGNP+ P I+GM+AGH
Sbjct: 121 GISLVFMIVYVWSREFPNARINIYGVVSLKGFYLPWALLALDLIFGNPIKPDIVGMIAGH 180

Query: 213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
           LYYFLTVLHPLAGGK+ FKTPL+VHK+VA+WGEGTQ+N+PV  NP AG+ F+GRS+ L G
Sbjct: 181 LYYFLTVLHPLAGGKFKFKTPLWVHKIVAYWGEGTQINAPVQSNPSAGIVFKGRSHRLGG 240

Query: 273 TRSTAPS-AEQPETNTTIPSEQPNATAGGVAFRGRSYRLDG 312
           T++T  S AEQ E N +  S QP + + G+AF+G+SYRL+G
Sbjct: 241 TQATTKSTAEQNEGNASASSPQPQSQSKGIAFQGKSYRLNG 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458345|ref|XP_004146908.1| PREDICTED: derlin-1.1-like isoform 2 [Cucumis sativus] gi|449502242|ref|XP_004161586.1| PREDICTED: derlin-1.1-like isoform 2 [Cucumis sativus]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/288 (72%), Positives = 233/288 (80%), Gaps = 13/288 (4%)

Query: 33  MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
           MSTP EYY SLPPVSK YGV+CLM TAA YL LY+P++I L Y  VIK+FQVWR++TNFF
Sbjct: 1   MSTPLEYYRSLPPVSKLYGVSCLMTTAALYLDLYDPESIDLNYSLVIKKFQVWRLITNFF 60

Query: 93  FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
           FLGPFSF FAFRLIIIAKYGVSLERGPFDKRTADY+WML FGALSLL MA +P   TPFM
Sbjct: 61  FLGPFSFPFAFRLIIIAKYGVSLERGPFDKRTADYVWMLFFGALSLLAMAIVPYCWTPFM 120

Query: 153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
           G SLVFM+VYIWGREFPNARI+IYGVVSLKGFYLPWAMLAL+LIFG+ L P ILGMV GH
Sbjct: 121 GRSLVFMIVYIWGREFPNARINIYGVVSLKGFYLPWAMLALDLIFGHHLKPDILGMVVGH 180

Query: 213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
           LYYFLTVLHPLAGGK+I KTP ++HKLV++WGEG Q NSPV R+P AG AFRGRSY L+G
Sbjct: 181 LYYFLTVLHPLAGGKFILKTPYWIHKLVSYWGEGIQFNSPVQRDPSAGTAFRGRSYRLNG 240

Query: 273 TRSTAPSAEQPETNT---------TIPSEQPNATAGGVAFRGRSYRLD 311
           TR++     Q ET T           P +Q N    GVAFRGRSYRL 
Sbjct: 241 TRTST----QEETQTRRRSSPSPPPAPPQQGNNQDEGVAFRGRSYRLS 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508198|ref|XP_003522846.1| PREDICTED: derlin-1-like [Glycine max]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/281 (72%), Positives = 233/281 (82%), Gaps = 1/281 (0%)

Query: 33  MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
           MSTPAEYY SLPPVSK YGVACLM TAAFYLQ Y+  NIAL Y  V KR QVWR++TNFF
Sbjct: 1   MSTPAEYYRSLPPVSKAYGVACLMTTAAFYLQFYDAWNIALDYGSVFKRLQVWRLITNFF 60

Query: 93  FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
           FLGPFSF FA RLIIIAKYGVSLERGPFD RTADY+WM +FGALSLLV+AA+P    PFM
Sbjct: 61  FLGPFSFPFAIRLIIIAKYGVSLERGPFDNRTADYVWMFIFGALSLLVIAAVPFFWYPFM 120

Query: 153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
           G SLVFM+VY+W REFPNARI+IYGVVSLKGFYLPWA+LAL+LIFG+P+ P I+GM+AGH
Sbjct: 121 GISLVFMLVYVWSREFPNARINIYGVVSLKGFYLPWALLALDLIFGDPIKPDIVGMIAGH 180

Query: 213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSL-S 271
           LYYFLTVLHPLAGGK+ FKTPL+VHK+VA+WGEGTQ+N+PV  NP AG+ F+GRS+ L  
Sbjct: 181 LYYFLTVLHPLAGGKFRFKTPLWVHKIVAYWGEGTQINAPVQSNPSAGIVFKGRSHRLGG 240

Query: 272 GTRSTAPSAEQPETNTTIPSEQPNATAGGVAFRGRSYRLDG 312
              +T  +AEQ E N +    QP     G+AFRG+SYRLDG
Sbjct: 241 TQTTTRRTAEQTEGNDSASCPQPQNQGDGIAFRGKSYRLDG 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466022|ref|XP_002266374.1| PREDICTED: derlin-1.1-like [Vitis vinifera]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/281 (72%), Positives = 235/281 (83%), Gaps = 5/281 (1%)

Query: 33  MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
           MSTPAEYY SLPPVSK YGVACL+ T A+YLQLY+P NIAL YE V KRFQVWR+VTNFF
Sbjct: 1   MSTPAEYYRSLPPVSKVYGVACLLTTTAYYLQLYHPWNIALSYELVFKRFQVWRLVTNFF 60

Query: 93  FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
           FLGPFS  FA RL+IIA+YGVSLERGPFDKRTADY+WML+ GALSLLVMA +P L + FM
Sbjct: 61  FLGPFSLSFALRLLIIARYGVSLERGPFDKRTADYVWMLISGALSLLVMAVVPYLWSWFM 120

Query: 153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
           G SLVFM+VY+WGREFPNA+I+ YG+VS KGFYLPW  L ++L+ GNPL P ILGMVAGH
Sbjct: 121 GASLVFMIVYVWGREFPNAQINFYGLVSFKGFYLPWIYLTVDLLLGNPLKPDILGMVAGH 180

Query: 213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
           LYYFLTVLHPLAGGK I KTPL+VHKLVAFWG+GTQVNSPV ++P AGVAFRGRSY L+G
Sbjct: 181 LYYFLTVLHPLAGGKNILKTPLWVHKLVAFWGKGTQVNSPVQQDPNAGVAFRGRSYRLNG 240

Query: 273 TRSTAPSAEQPETNTTIPSEQPNATAGGVAFRGRSYRLDGR 313
            +  +PS  + ET+T +    PN+   GV F+G+SYRL GR
Sbjct: 241 NQRRSPS--EAETSTPMQQTDPNS---GVPFQGKSYRLGGR 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458343|ref|XP_004146907.1| PREDICTED: derlin-1.1-like isoform 1 [Cucumis sativus] gi|449502239|ref|XP_004161585.1| PREDICTED: derlin-1.1-like isoform 1 [Cucumis sativus]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/283 (72%), Positives = 228/283 (80%), Gaps = 13/283 (4%)

Query: 38  EYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPF 97
            YY SLPPVSK YGV+CLM TAA YL LY+P++I L Y  VIK+FQVWR++TNFFFLGPF
Sbjct: 12  RYYRSLPPVSKLYGVSCLMTTAALYLDLYDPESIDLNYSLVIKKFQVWRLITNFFFLGPF 71

Query: 98  SFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLV 157
           SF FAFRLIIIAKYGVSLERGPFDKRTADY+WML FGALSLL MA +P   TPFMG SLV
Sbjct: 72  SFPFAFRLIIIAKYGVSLERGPFDKRTADYVWMLFFGALSLLAMAIVPYCWTPFMGRSLV 131

Query: 158 FMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFL 217
           FM+VYIWGREFPNARI+IYGVVSLKGFYLPWAMLAL+LIFG+ L P ILGMV GHLYYFL
Sbjct: 132 FMIVYIWGREFPNARINIYGVVSLKGFYLPWAMLALDLIFGHHLKPDILGMVVGHLYYFL 191

Query: 218 TVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSGTRSTA 277
           TVLHPLAGGK+I KTP ++HKLV++WGEG Q NSPV R+P AG AFRGRSY L+GTR++ 
Sbjct: 192 TVLHPLAGGKFILKTPYWIHKLVSYWGEGIQFNSPVQRDPSAGTAFRGRSYRLNGTRTST 251

Query: 278 PSAEQPETNT---------TIPSEQPNATAGGVAFRGRSYRLD 311
               Q ET T           P +Q N    GVAFRGRSYRL 
Sbjct: 252 ----QEETQTRRRSSPSPPPAPPQQGNNQDEGVAFRGRSYRLS 290

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857173|emb|CAN79229.1| hypothetical protein VITISV_027074 [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/284 (70%), Positives = 231/284 (81%), Gaps = 5/284 (1%)

Query: 30  DIAMSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVT 89
           D    +   YY SLPPVSK YGVACL+ T A+YLQLY+P NIAL YE V KRFQVWR+VT
Sbjct: 3   DNNQHSSHRYYRSLPPVSKVYGVACLLTTTAYYLQLYHPWNIALSYELVFKRFQVWRLVT 62

Query: 90  NFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRT 149
           NFFFLGPFS  FA RL+IIA+YGVSLERGPFDKRTADY+WML+ GALSLLVMA +P L +
Sbjct: 63  NFFFLGPFSLSFALRLLIIARYGVSLERGPFDKRTADYVWMLISGALSLLVMAVVPYLWS 122

Query: 150 PFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMV 209
            FMG SLVFM+VY+WGREFPNA+I+ YG+VS KGFYLPW  L ++L+ GNPL P ILGMV
Sbjct: 123 XFMGASLVFMIVYVWGREFPNAQINFYGLVSFKGFYLPWIYLTVDLLLGNPLKPDILGMV 182

Query: 210 AGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYS 269
           AGHLYYFLTVLHPLAGGK I KTPL+VHKLVAFWG+GTQVNSPV ++P AGVAFRGRSY 
Sbjct: 183 AGHLYYFLTVLHPLAGGKNILKTPLWVHKLVAFWGKGTQVNSPVQQDPNAGVAFRGRSYR 242

Query: 270 LSGTRSTAPSAEQPETNTTIPSEQPNATAGGVAFRGRSYRLDGR 313
           L+G +  +PS  + ET+T +    PN+   GV F+G+SYRL GR
Sbjct: 243 LNGNQRRSPS--EAETSTPMQQTDPNS---GVPFQGKSYRLGGR 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745056|emb|CBI38648.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/275 (72%), Positives = 229/275 (83%), Gaps = 5/275 (1%)

Query: 39  YYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFS 98
           YY SLPPVSK YGVACL+ T A+YLQLY+P NIAL YE V KRFQVWR+VTNFFFLGPFS
Sbjct: 58  YYRSLPPVSKVYGVACLLTTTAYYLQLYHPWNIALSYELVFKRFQVWRLVTNFFFLGPFS 117

Query: 99  FRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVF 158
             FA RL+IIA+YGVSLERGPFDKRTADY+WML+ GALSLLVMA +P L + FMG SLVF
Sbjct: 118 LSFALRLLIIARYGVSLERGPFDKRTADYVWMLISGALSLLVMAVVPYLWSWFMGASLVF 177

Query: 159 MMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLT 218
           M+VY+WGREFPNA+I+ YG+VS KGFYLPW  L ++L+ GNPL P ILGMVAGHLYYFLT
Sbjct: 178 MIVYVWGREFPNAQINFYGLVSFKGFYLPWIYLTVDLLLGNPLKPDILGMVAGHLYYFLT 237

Query: 219 VLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSGTRSTAP 278
           VLHPLAGGK I KTPL+VHKLVAFWG+GTQVNSPV ++P AGVAFRGRSY L+G +  +P
Sbjct: 238 VLHPLAGGKNILKTPLWVHKLVAFWGKGTQVNSPVQQDPNAGVAFRGRSYRLNGNQRRSP 297

Query: 279 SAEQPETNTTIPSEQPNATAGGVAFRGRSYRLDGR 313
           S  + ET+T +    PN+   GV F+G+SYRL GR
Sbjct: 298 S--EAETSTPMQQTDPNS---GVPFQGKSYRLGGR 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490158|ref|XP_002266291.2| PREDICTED: LOW QUALITY PROTEIN: derlin-1.2-like [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/276 (71%), Positives = 231/276 (83%), Gaps = 5/276 (1%)

Query: 33  MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
           M+TPAEYY SLPPVSK YGVACL+ T A+YLQLY+P NIAL YE V KRFQVWR+VTNFF
Sbjct: 1   MATPAEYYRSLPPVSKVYGVACLLTTTAYYLQLYSPWNIALSYELVFKRFQVWRLVTNFF 60

Query: 93  FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
           FLGPFSF FAFRL+IIA+YGV+LER  FD+RTADY+WML+FGALSLLVMA +P L + FM
Sbjct: 61  FLGPFSFSFAFRLLIIARYGVALERWSFDERTADYVWMLIFGALSLLVMAVVPYLWSRFM 120

Query: 153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
           G SLVFM+ Y+WGREFPNA+I+ +G+VS KGFYLPW  LA++L+ GNPL P ILGMVAGH
Sbjct: 121 GASLVFMIFYVWGREFPNAQINFHGLVSFKGFYLPWIYLAVDLLLGNPLKPDILGMVAGH 180

Query: 213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
           LYYFLTVLHPLAGGK I KTPL+VHKLVAFWG GTQVNSPV ++P AGVAFRGRSY L+G
Sbjct: 181 LYYFLTVLHPLAGGKNILKTPLWVHKLVAFWGXGTQVNSPVQQDPNAGVAFRGRSYCLNG 240

Query: 273 TRSTAPSAEQPETNTTIPSEQPNATAGGVAFRGRSY 308
           ++  +PS    E  T+ P +Q N  + GV FRG+SY
Sbjct: 241 SQRRSPS----EAETSTPMQQTNPNS-GVPFRGKSY 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2118294	266	DER1 "AT4G29330" [Arabidopsis	0.843	0.992	0.539	1.5e-76
MGI|MGI:2151483	239	Derl2 "Der1-like domain family	0.731	0.958	0.350	1.4e-39
ZFIN|ZDB-GENE-050522-90	239	derl2 "Der1-like domain family	0.757	0.991	0.340	1.8e-39
UNIPROTKB|F6PVF9	239	DERL2 "Uncharacterized protein	0.731	0.958	0.350	2.3e-39
UNIPROTKB|Q9GZP9	239	DERL2 "Derlin-2" [Homo sapiens	0.731	0.958	0.350	2.3e-39
UNIPROTKB|Q5RC74	239	DERL2 "Derlin-2" [Pongo abelii	0.731	0.958	0.350	2.3e-39
UNIPROTKB|F1RL23	231	DERL3 "Uncharacterized protein	0.642	0.870	0.375	3.7e-39
UNIPROTKB|Q0P5E4	231	DERL3 "Derlin-3" [Bos taurus (	0.645	0.874	0.370	4.8e-39
UNIPROTKB|Q96Q80	235	DERL3 "Derlin-3" [Homo sapiens	0.642	0.855	0.375	6.1e-39
UNIPROTKB|F1MS86	231	DERL3 "Derlin-3" [Bos taurus (	0.645	0.874	0.365	9.9e-39

TAIR|locus:2118294 DER1 "AT4G29330" [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 150/278 (53%), Positives = 198/278 (71%)

Query:    33 MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFF 92
             MS+P E+YNSLPP++K YG  C   T A  L L  P +IAL  E V+K+FQ+WR++TN F
Sbjct:     1 MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60

Query:    93 FLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFM 152
             FLG FS  F  RL++IA+YGV LE+GPF++RTAD+LWM++FG+ +LLV++ IP   TPF+
Sbjct:    61 FLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFL 120

Query:   153 GPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGH 212
             G SLVFM++Y+W REFPNA IS+YG+V+LK FYLPWAMLAL++IFG+P++P +LG++AGH
Sbjct:   121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query:   213 LYYFLTVLHPLAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
             LYYFLTVLHPLA GK   KTP +V+K+VA W  G  V S V +    G A  G    + G
Sbjct:   181 LYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVAS-VRQAGGVGAAGPGAGGGVGG 239

Query:   273 TRSTAPSAEQPETNTTIPSEQPNATAGGVAFRGRSYRL 310
               + + +   PE++ T             AFRGRSYRL
Sbjct:   240 GGAYSSARAPPESSNT-------------AFRGRSYRL 264

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

MGI|MGI:2151483 Derl2 "Der1-like domain family, member 2" [Mus musculus (taxid:10090)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 82/234 (35%), Positives = 127/234 (54%)

Query:    40 YNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSF 99
             Y  +PPVS+ Y  AC++ TAA  L+L  P  +    E + K FQ+WR++TNF F GP  F
Sbjct:    10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query:   100 RFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFM 159
              F F +I + +Y   LE G F  RTAD+++M +FG   + +      L   F+G +   M
Sbjct:    70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSL--VFLGQAFTIM 127

Query:   160 MVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTV 219
             +VY+W R  P  R++ +G+++ +  +LPW ++   L+ GN ++  +LG+  GH+Y+FL  
Sbjct:   128 LVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLED 187

Query:   220 LHP-LAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
             + P   GG  I KTP  +  +     E    N P+P     G A+ G    L G
Sbjct:   188 IFPNQPGGIRILKTPSILRTIFDTPDEDPNYN-PLPEERPGGFAW-GEGQRLGG 239

GO:0001967 "suckling behavior" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005769 "early endosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISO;IMP

ZFIN|ZDB-GENE-050522-90 derl2 "Der1-like domain family, member 2" [Danio rerio (taxid:7955)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 83/244 (34%), Positives = 136/244 (55%)

Query:    31 IAMSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTN 90
             +A  T  + Y  +P V++ Y  AC++ TAA  L+L  P  +    + +++ +QVWR++TN
Sbjct:     1 MAYQTIRQEYLQIPVVTRAYTTACVLTTAAVQLELITPFQLYFNPDLILRNYQVWRLITN 60

Query:    91 FFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTP 150
             F F GP  F F F +I + +Y   LE G F  RTAD+++M +FG L + +      L   
Sbjct:    61 FLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGLLMTIFGTFVNL--V 118

Query:   151 FMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVA 210
             F+G +   M+VYIW R  PN R++ +G+++ +  +LPW ++   L+ GN ++  +LG+  
Sbjct:   119 FLGQAFTIMLVYIWSRRNPNVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAV 178

Query:   211 GHLYYFLTVLHPL--AGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSY 268
             GH+YYFL  + P    GG+++ +TP  +  L     E    N P+P +   G A+ G   
Sbjct:   179 GHVYYFLEDVFPNQPGGGRWL-RTPSILKMLFDTPEEDANYN-PLPEDRPGGFAW-GEGQ 235

Query:   269 SLSG 272
              L G
Sbjct:   236 RLGG 239

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F6PVF9 DERL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 82/234 (35%), Positives = 127/234 (54%)

Query:    40 YNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSF 99
             Y  +PPVS+ Y  AC++ TAA  L+L  P  +    E + K FQ+WR++TNF F GP  F
Sbjct:    10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query:   100 RFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFM 159
              F F +I + +Y   LE G F  RTAD+++M +FG   + +      L   F+G +   M
Sbjct:    70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSL--VFLGQAFTIM 127

Query:   160 MVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTV 219
             +VY+W R  P  R++ +G+++ +  +LPW ++   L+ GN ++  +LG+  GH+Y+FL  
Sbjct:   128 LVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLED 187

Query:   220 LHP-LAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
             + P   GG  I KTP  +  +     E    N P+P     G A+ G    L G
Sbjct:   188 VFPNQPGGIRILKTPSILKAIFDTPDEDPNYN-PLPEERPGGFAW-GEGQRLGG 239

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

UNIPROTKB|Q9GZP9 DERL2 "Derlin-2" [Homo sapiens (taxid:9606)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 82/234 (35%), Positives = 127/234 (54%)

Query:    40 YNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSF 99
             Y  +PPVS+ Y  AC++ TAA  L+L  P  +    E + K FQ+WR++TNF F GP  F
Sbjct:    10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query:   100 RFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFM 159
              F F +I + +Y   LE G F  RTAD+++M +FG   + +      L   F+G +   M
Sbjct:    70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSL--VFLGQAFTIM 127

Query:   160 MVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTV 219
             +VY+W R  P  R++ +G+++ +  +LPW ++   L+ GN ++  +LG+  GH+Y+FL  
Sbjct:   128 LVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLED 187

Query:   220 LHP-LAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
             + P   GG  I KTP  +  +     E    N P+P     G A+ G    L G
Sbjct:   188 VFPNQPGGIRILKTPSILKAIFDTPDEDPNYN-PLPEERPGGFAW-GEGQRLGG 239

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IDA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IMP

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5RC74 DERL2 "Derlin-2" [Pongo abelii (taxid:9601)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 82/234 (35%), Positives = 127/234 (54%)

Query:    40 YNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSF 99
             Y  +PPVS+ Y  AC++ TAA  L+L  P  +    E + K FQ+WR++TNF F GP  F
Sbjct:    10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query:   100 RFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFM 159
              F F +I + +Y   LE G F  RTAD+++M +FG   + +      L   F+G +   M
Sbjct:    70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSL--VFLGQAFTIM 127

Query:   160 MVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTV 219
             +VY+W R  P  R++ +G+++ +  +LPW ++   L+ GN ++  +LG+  GH+Y+FL  
Sbjct:   128 LVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLED 187

Query:   220 LHP-LAGGKYIFKTPLFVHKLVAFWGEGTQVNSPVPRNPQAGVAFRGRSYSLSG 272
             + P   GG  I KTP  +  +     E    N P+P     G A+ G    L G
Sbjct:   188 VFPNQPGGIRILKTPSILKAIFDTPDEDPNYN-PLPEERPGGFAW-GEGQRLGG 239

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0030307 "positive regulation of cell growth" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISS

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISS

UNIPROTKB|F1RL23 DERL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 77/205 (37%), Positives = 126/205 (61%)

Query:    37 AEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGP 96
             AE+   +P V++TY  AC++ TAA  L+  +P  +      V ++FQVWR+VTNF F GP
Sbjct:     8 AEFLQ-VPAVTRTYTTACVLTTAAVQLEFLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGP 66

Query:    97 FSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSL 156
               F F F ++ + +Y   LE G F  RTAD+++M +FG + ++++  +  L   F+G +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMILLGLLGSLF--FLGQAL 124

Query:   157 VFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYF 216
               M+VY+W R  P  R++ +G+++ +  +LPWA++   L+ GN +L  +LG+  GH+YYF
Sbjct:   125 TAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYF 184

Query:   217 LTVLHP-LAGGKYIFKTPLFVHKLV 240
             L  + P   GGK +  TP F+  L+
Sbjct:   185 LEDVFPNQPGGKRLLLTPSFLKLLL 209

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

UNIPROTKB|Q0P5E4 DERL3 "Derlin-3" [Bos taurus (taxid:9913)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 76/205 (37%), Positives = 126/205 (61%)

Query:    37 AEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGP 96
             A  +  +P V++TY  AC++ TAA  L+L +P  +      V ++FQVWR++TNF F GP
Sbjct:     7 ATEFLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGP 66

Query:    97 FSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSL 156
               F F F ++ + +Y   LE G F  RTAD+++M +FG + + ++  +  L   F+G +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLF--FLGQAL 124

Query:   157 VFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYF 216
               M+VY+W R  P  R++ +G+++ +  +LPWA++ L ++ GN +L  +LG+  GH+YYF
Sbjct:   125 TAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYF 184

Query:   217 LTVLHP-LAGGKYIFKTPLFVHKLV 240
             L  + P   GGK +  TP F+  L+
Sbjct:   185 LEDVFPNQPGGKRLLLTPSFLKLLL 209

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96Q80 DERL3 "Derlin-3" [Homo sapiens (taxid:9606)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 77/205 (37%), Positives = 127/205 (61%)

Query:    37 AEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGP 96
             AE+   +P V++ Y  AC++ TAA  L+L +P  +      V ++FQVWR+VTNF F GP
Sbjct:     8 AEFLQ-VPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGP 66

Query:    97 FSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSL 156
               F F F ++ + +Y   LE G F  RTAD+++M +FG + + ++  +  L   F+G +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLF--FLGQAL 124

Query:   157 VFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYF 216
             + M+VY+W R  P  R++ +G+++ +  +LPWA++   L+ GN +L  +LG+  GH+YYF
Sbjct:   125 MAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYF 184

Query:   217 LTVLHP-LAGGKYIFKTPLFVHKLV 240
             L  + P   GGK + +TP F+  L+
Sbjct:   185 LEDVFPNQPGGKRLLQTPGFLKLLL 209

GO:0005515 "protein binding" evidence=IPI

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP;NAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IDA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IMP

UNIPROTKB|F1MS86 DERL3 "Derlin-3" [Bos taurus (taxid:9913)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 75/205 (36%), Positives = 125/205 (60%)

Query:    37 AEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGP 96
             A  +  +P V++TY  AC++ TAA  L+L +P  +      V ++FQVWR++TNF F GP
Sbjct:     7 ATEFLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGP 66

Query:    97 FSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSL 156
               F F F ++ + +Y   LE G F  RTAD+++M +FG + + ++  +  L   F+G +L
Sbjct:    67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLF--FLGQAL 124

Query:   157 VFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYF 216
               M+VY+W R  P  R++ +G+++ +  +LPWA++   ++ GN +L  +LG+  GH+YYF
Sbjct:   125 TAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGFSMLLGNSILVDLLGIAVGHVYYF 184

Query:   217 LTVLHP-LAGGKYIFKTPLFVHKLV 240
             L  + P   GGK +  TP F+  L+
Sbjct:   185 LEDVFPNQPGGKRLLLTPSFLKLLL 209

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZU9	DERL1_ARATH	No assigned EC number	0.5395	0.8434	0.9924	yes	no
Q06397	DERL1_ORYSJ	No assigned EC number	0.5809	0.7635	0.9876	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
pfam04511	192	pfam04511, DER1, Der1-like family	5e-43
COG5291	313	COG5291, COG5291, Predicted membrane protein [Func	8e-22

>gnl|CDD|218120 pfam04511, DER1, Der1-like family

 Score =  146 bits (370), Expect = 5e-43
 Identities = 71/193 (36%), Positives = 114/193 (59%), Gaps = 4/193 (2%)

Query: 43  LPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFA 102
           +PPV++ + +A ++ T    L L +P  +   +E V K+FQ+WR++T+ F+ G   F F 
Sbjct: 1   IPPVTRYWTLATVLLTILGRLNLISPLKLVFNWELVFKKFQIWRLLTSLFYFGNTGFHFL 60

Query: 103 FRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVY 162
           F L  + +Y   LE G F  R ADYL+ML+FGA+ + +   I      F+G  L  M+VY
Sbjct: 61  FNLYFLYRYSSMLENGSFRGRAADYLYMLIFGAVLITIFGLIVNAY--FLGQGLTAMIVY 118

Query: 163 IWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGN-PLLPAILGMVAGHLYYFLTVLH 221
           +W R+  + +++ +G++  K  YLPW +L    + GN   L  ++G++ GHLYYF   ++
Sbjct: 119 VWSRKNADVQVNFFGLIRFKASYLPWVLLGFSFLLGNRSSLVDLMGILVGHLYYFFKDVY 178

Query: 222 P-LAGGKYIFKTP 233
           P L GGK + KTP
Sbjct: 179 PRLPGGKDLLKTP 191

The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process. The mutant classes were called 'der' for 'degradation in the ER'. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein, that is localised to the ER. Deletion of DER1 abolished degradation of the substrate proteins. The function of the Der1 protein seems to be specifically required for the degradation process associated with the ER. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. Suggesting that this family may also mediate degradation of misfolded proteins (Bateman A pers. obs.). Length = 192

>gnl|CDD|227611 COG5291, COG5291, Predicted membrane protein [Function unknown]

 Score = 93.1 bits (231), Expect = 8e-22
 Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 3/198 (1%)

Query: 43  LPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFA 102
           +PP+++   +     T   Y+ L +P          +KR Q+WR+ T+F + G  +    
Sbjct: 19  IPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMF 78

Query: 103 FRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVY 162
             +  + +Y   LE G F+    +Y W L+  +L +  ++ I    +  +G S    + Y
Sbjct: 79  MHVYFLYRYSRMLEEGCFNTSLVEYFWYLLVISLVIFAISNIYGGISA-LGTSFSATITY 137

Query: 163 IWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGNPL-LPAILGMVAGHLYYFLTVLH 221
           IW +  P A I  +G +S+ G YLP+ +L    +    + +  +LG V GHL+++   ++
Sbjct: 138 IWSKRNPRAIIQFFGFISVPGKYLPFILLGFSFLSRRGISIDDVLGFVVGHLFHYFGDIY 197

Query: 222 PLAGGKYIFKTPLFVHKL 239
           P+ G   I  TP +V KL
Sbjct: 198 PMIGRD-ILSTPCWVKKL 214

Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
KOG0858	239	consensus Predicted membrane protein [Function unk	100.0
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	100.0
COG5291	313	Predicted membrane protein [Function unknown]	100.0
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.6
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.13
COG0705	228	Membrane associated serine protease [Amino acid tr	98.88
PTZ00101	278	rhomboid-1 protease; Provisional	98.83
KOG4463	323	consensus Uncharacterized conserved protein [Funct	98.76
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	98.72
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	97.44
KOG2890	326	consensus Predicted membrane protein [Function unk	97.43
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	94.97

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=8.4e-64  Score=450.62  Aligned_cols=208  Identities=39%  Similarity=0.854  Sum_probs=200.7

Q ss_pred             cCcHHHHhcccchHHHHHHHHHHHHHHHHHcCccCccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHh
Q 021348           33 MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYG  112 (313)
Q Consensus        33 ~~~~~~~~~~iPpVTR~~~~~~v~~sll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys  112 (313)
                      ++++.+|+.+||||||+|+++|+++++++++++++|.+++++|++|+||+|+||++|+++++|++++++++|||++|+||
T Consensus         2 ~~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~   81 (239)
T KOG0858|consen    2 NMDLLNFYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYS   81 (239)
T ss_pred             chhHHHHHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhhhccCCCceEEEEEeeeeccchHHHHHHH
Q 021348          113 VSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLA  192 (313)
Q Consensus       113 ~~LE~~~F~~~~adyl~~llf~~~~i~lla~~~~~~~~fl~~~l~~al~YvWsr~np~~~v~~~gli~ika~yLP~vll~  192 (313)
                      ++||+++|+++++||+||++++++++.+.+.+  .+..+|+++++++++|+|||+||+++|+|||++++||+||||++++
T Consensus        82 ~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~--~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvll~  159 (239)
T KOG0858|consen   82 SMLEEGSFRGRTADFLYMLLFGAVLLTLTGLF--VYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVLLG  159 (239)
T ss_pred             HHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHHHH
Confidence            99999999999999999999999998877765  5678999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChhhhHHhhhhHHHHhhhhhcccC-CCCccCccChHHHHHHhhh
Q 021348          193 LELIFGNPLLPAILGMVAGHLYYFLTVLHPL-AGGKYIFKTPLFVHKLVAF  242 (313)
Q Consensus       193 ~~~l~~~~~~~~l~GI~vGhlY~fL~~i~P~-~gg~~~l~tP~~l~~l~~~  242 (313)
                      ++++.+++.+.|++||++||+|+|+++++|. .||++++|||+|+++++++
T Consensus       160 fs~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~  210 (239)
T KOG0858|consen  160 FSFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFAD  210 (239)
T ss_pred             HHHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCC
Confidence            9999999889999999999999999999998 7889999999999999976

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=100.00  E-value=4.8e-53  Score=378.36  Aligned_cols=192  Identities=42%  Similarity=0.922  Sum_probs=182.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHcCccCccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCC
Q 021348           43 LPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDK  122 (313)
Q Consensus        43 iPpVTR~~~~~~v~~sll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~  122 (313)
                      ||||||+++++++++++++.+++++|.+++++|++|++|+|+||++|++|++|+.++++++++|++|+||++||+++|++
T Consensus         1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~   80 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQG   80 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHhhcC---CCCCCchHHHHHHHHHhhhccCCCceEEEEEeeeeccchHHHHHHHHHHHhcC
Q 021348          123 RTADYLWMLMFGALSLLVMAAIPP---LRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGN  199 (313)
Q Consensus       123 ~~adyl~~llf~~~~i~lla~~~~---~~~~fl~~~l~~al~YvWsr~np~~~v~~~gli~ika~yLP~vll~~~~l~~~  199 (313)
                      +++||+||++++++++++++.+..   .+.+++++++..+++|+|||+||+.+|+++|++++|++|+||+++++++++++
T Consensus        81 ~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~~~l~~~  160 (197)
T PF04511_consen   81 RSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAFSLLFGG  160 (197)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHHHHHhCC
Confidence            999999999999998888876522   24568999999999999999999999999999999999999999999999988


Q ss_pred             -ChhhhHHhhhhHHHHhhhhhcccC-CCCccCccChH
Q 021348          200 -PLLPAILGMVAGHLYYFLTVLHPL-AGGKYIFKTPL  234 (313)
Q Consensus       200 -~~~~~l~GI~vGhlY~fL~~i~P~-~gg~~~l~tP~  234 (313)
                       +.+.|++||++||+|+|+++++|+ .||++++|||+
T Consensus       161 ~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~  197 (197)
T PF04511_consen  161 SSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ  197 (197)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence             789999999999999999999998 67999999996

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>COG5291 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.1e-48  Score=351.92  Aligned_cols=264  Identities=21%  Similarity=0.383  Sum_probs=216.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHcCccCccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCC
Q 021348           43 LPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDK  122 (313)
Q Consensus        43 iPpVTR~~~~~~v~~sll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~  122 (313)
                      ||||||++++++.+++++++.++++|+++++.|++++|+.|+||++|+++++++..+++++++|++|+||++||+++|..
T Consensus        19 IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~   98 (313)
T COG5291          19 IPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNT   98 (313)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCc
Confidence            99999999999999999999999999999999999999999999999999999989999999999999999999999976


Q ss_pred             CchhHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhhhccCCCceEEEEEeeeeccchHHHHHHHHHHHhc-CCh
Q 021348          123 RTADYLWMLMFGALSLLVMAAIPPLRTPFMGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFG-NPL  201 (313)
Q Consensus       123 ~~adyl~~llf~~~~i~lla~~~~~~~~fl~~~l~~al~YvWsr~np~~~v~~~gli~ika~yLP~vll~~~~l~~-~~~  201 (313)
                      +-.||+|||+++..+|..++.+. .....|+++++.||.|+|+++||+++++|||+|++++||||+++++++++.+ +..
T Consensus        99 ~lv~Y~~yl~~~~l~i~a~s~I~-gg~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP~Illgfsfl~~~g~~  177 (313)
T COG5291          99 SLVEYFWYLLVISLVIFAISNIY-GGISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFSFLSRRGIS  177 (313)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHh-cchhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhhHHHHHHHHHhcCCcc
Confidence            66799999999988888877763 2355689999999999999999999999999999999999999999999998 556


Q ss_pred             hhhHHhhhhHHHHhhhhhcccCCCCccC-----------ccChHHHHHHhhhhCCCCCCC---------CCCCCCCCCCc
Q 021348          202 LPAILGMVAGHLYYFLTVLHPLAGGKYI-----------FKTPLFVHKLVAFWGEGTQVN---------SPVPRNPQAGV  261 (313)
Q Consensus       202 ~~~l~GI~vGhlY~fL~~i~P~~gg~~~-----------l~tP~~l~~l~~~~~~~~~~~---------~~~~~~~~~~~  261 (313)
                      +.+++|+.+||+..++.++||.+| ++.           .++|.|+.++-....+....+         .|. .+...+ 
T Consensus       178 i~~vlGf~~g~~~h~~g~I~~mi~-r~~~~t~~~~~~~~~~~p~~f~s~~~~It~~H~~n~~~~N~~~~~~~-SQ~~~~-  254 (313)
T COG5291         178 IDDVLGFVVGHLFHYFGDIYPMIG-RDILSTPCWVKKLFNEHPSSFCSARKGITIRHERNMGYSNASTTTEE-SQCCAE-  254 (313)
T ss_pred             ceeeeeeeeccccccccchhhhhh-cccCCCcccccccccCCchhhhhhcccceeeccccCcccccccccch-hhhhhh-
Confidence            999999999999999999999864 333           455555555543222111111         111 233334 


Q ss_pred             ccCCCCccCCCCCCCCCCCCCCCCCCCCCc---CCCCCCCCCcccCCcccccCCC
Q 021348          262 AFRGRSYSLSGTRSTAPSAEQPETNTTIPS---EQPNATAGGVAFRGRSYRLDGR  313 (313)
Q Consensus       262 ~~~g~g~rLg~~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~~F~G~g~Rlg~~  313 (313)
                      .|.|+|++||.++   +..+|..|++|+.+   |..+...+.++|+|+|+|.|+.
T Consensus       255 TF~g~g~~lgt~~---~~~s~~~gs~t~~~~~~~~~t~~~~~~~~~~~~~~~~qs  306 (313)
T COG5291         255 TFKGSGVVLGTKS---MAVSTVVGSSTEAKNNYLDFTEALCDKEVVAEQNPESQS  306 (313)
T ss_pred             cccccceeecccc---eeEEeeecccccccccccccccccchhhhhhccCccccC
Confidence            6899999999753   45566677776633   3333444458999999999863

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.60  E-value=2.3e-15  Score=138.34  Aligned_cols=180  Identities=15%  Similarity=0.250  Sum_probs=138.6

Q ss_pred             cCcHHHHhcccchHHHHHHHHHHHHHHHHHcCccCccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHh
Q 021348           33 MSTPAEYYNSLPPVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYG  112 (313)
Q Consensus        33 ~~~~~~~~~~iPpVTR~~~~~~v~~sll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys  112 (313)
                      +....+++-.+|+.|-..+..|.++.+...+..+.  ...+.++.++++.|+||++|+.++|.+ -+|++|||..++..+
T Consensus         4 ~g~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s-~~hllfnmlaL~~~g   80 (258)
T KOG2632|consen    4 GGRVGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLS-LPHLLFNMLALWPLG   80 (258)
T ss_pred             cccCccccccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHhch
Confidence            34567888999999999999999888887765444  566777788888999999999999988 899999999999999


Q ss_pred             HhhccCCCCCCchhHHHHHHHH----HHHHHHHHh-hcCCCCC-----CchHHHHHHHHHhhhccCCCceEEEEEeeeec
Q 021348          113 VSLERGPFDKRTADYLWMLMFG----ALSLLVMAA-IPPLRTP-----FMGPSLVFMMVYIWGREFPNARISIYGVVSLK  182 (313)
Q Consensus       113 ~~LE~~~F~~~~adyl~~llf~----~~~i~lla~-~~~~~~~-----fl~~~l~~al~YvWsr~np~~~v~~~gli~ik  182 (313)
                      .++|+.+  |.++-++.+..+.    +++.+++.. +...+..     .--+...+++.-+-+-+.|....++||.+.||
T Consensus        81 ~~fE~~~--G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP  158 (258)
T KOG2632|consen   81 SQFERTH--GTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIP  158 (258)
T ss_pred             hHHHhhc--cceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhccccccc
Confidence            9999987  3366666554433    223333332 2111111     11246666666666888899999999999999


Q ss_pred             cchHHHHHHHHH-HHhcC-ChhhhHHhhhhHHHHhhh
Q 021348          183 GFYLPWAMLALE-LIFGN-PLLPAILGMVAGHLYYFL  217 (313)
Q Consensus       183 a~yLP~vll~~~-~l~~~-~~~~~l~GI~vGhlY~fL  217 (313)
                      ++|.||+++++. +++.+ +++.|++|+++|+.|-+.
T Consensus       159 ~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  159 IVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            999999998775 66665 789999999999999884

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.13  E-value=1.6e-10  Score=108.77  Aligned_cols=170  Identities=18%  Similarity=0.255  Sum_probs=106.0

Q ss_pred             HhcccchHHHHHHHHHHHHHHHHHcCccCc--cceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhc
Q 021348           39 YYNSLPPVSKTYGVACLMATAAFYLQLYNP--KNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLE  116 (313)
Q Consensus        39 ~~~~iPpVTR~~~~~~v~~sll~~~g~i~p--~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE  116 (313)
                      .-.+-.|+|-.+++.|+++.++..++....  ..+.+.. ......|+||++|+.|.|.+ .+|++|||+.+|..+..+|
T Consensus        89 ~~~~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~-~~~~~~q~WRl~T~~flH~~-~~Hl~fNml~l~~lG~~iE  166 (276)
T PRK10907         89 LRERAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPF-DPSLKFELWRYFTHALLHFS-LLHILFNLLWWWYLGGAVE  166 (276)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccc-cccccCCcHHHHhHHHHhCC-HHHHHHHHHHHHHHHHHHH
Confidence            334467899999999999998876543221  1222222 23346799999999999998 8999999999999999999


Q ss_pred             cCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCch-H-HHHHHHHHhhhc--cCCCceEEEEEeeeeccchHHHHHH-
Q 021348          117 RGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMG-P-SLVFMMVYIWGR--EFPNARISIYGVVSLKGFYLPWAML-  191 (313)
Q Consensus       117 ~~~F~~~~adyl~~llf~~~~i~lla~~~~~~~~fl~-~-~l~~al~YvWsr--~np~~~v~~~gli~ika~yLP~vll-  191 (313)
                      +..   ++..|+...++++++..++..+. .+..+.| + ++...+.|+|-+  +.|+..+      .++..++.++.+ 
T Consensus       167 ~~~---G~~~~l~l~l~s~i~~~~~~~~~-~~~~~gGaSGvVygL~g~~~~~~~~~p~~~~------~lp~~~~~f~llw  236 (276)
T PRK10907        167 KRL---GSGKLIVITLISALLSGWVQSKF-SGPWFGGLSGVVYALMGYVWLRGERDPQSGI------YLPRGLIAFALLW  236 (276)
T ss_pred             HHH---ChHHHHHHHHHHHHHHHHHHHHH-ccchhhHHHHHHHHHHHHHHHHhccccccch------hhhHHHHHHHHHH
Confidence            876   46667665555554433333321 2334433 3 444444577744  4554333      223333333322 


Q ss_pred             ---HHHHHhcCCh--hhhHHhhhhHHHHhhhhhc
Q 021348          192 ---ALELIFGNPL--LPAILGMVAGHLYYFLTVL  220 (313)
Q Consensus       192 ---~~~~l~~~~~--~~~l~GI~vGhlY~fL~~i  220 (313)
                         ++.-+++.++  ..|+.|.++|.+.-+++..
T Consensus       237 l~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        237 LVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             HHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence               1222223333  8899999999998877643

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=98.88  E-value=8.1e-09  Score=93.92  Aligned_cols=172  Identities=19%  Similarity=0.268  Sum_probs=121.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHcCccCccc--------eeeehHHHHhcc---eeeeEeeeccccCCccHHHHHHHHHHHHH
Q 021348           43 LPPVSKTYGVACLMATAAFYLQLYNPKN--------IALKYEDVIKRF---QVWRVVTNFFFLGPFSFRFAFRLIIIAKY  111 (313)
Q Consensus        43 iPpVTR~~~~~~v~~sll~~~g~i~p~~--------L~l~~~~v~~~~---QiWRLiTs~f~~g~~~~~~lf~ly~ly~y  111 (313)
                      .|++|+.++..++++.+...........        ....+..+....   |+||++|+.|.|++ -.|+++||+.+|.+
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~-~~Hll~N~~~l~~f   94 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAG-FLHLLFNMLALWVF   94 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence            5999999999999998877643222111        112222222222   89999999999998 89999999999999


Q ss_pred             hHhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcC-CC-CCCc-hHHHHHHHHHhhhccCCCceEEEEEe-eeeccchHH
Q 021348          112 GVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPP-LR-TPFM-GPSLVFMMVYIWGREFPNARISIYGV-VSLKGFYLP  187 (313)
Q Consensus       112 s~~LE~~~F~~~~adyl~~llf~~~~i~lla~~~~-~~-~~fl-~~~l~~al~YvWsr~np~~~v~~~gl-i~ika~yLP  187 (313)
                      +..+|+..   ++..|+.+.+.+++...+....+. .+ .+.+ .+.-++.++=.++...|..++..... ++.++..+-
T Consensus        95 g~~le~~~---G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i  171 (228)
T COG0705          95 GSNLERRL---GTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILI  171 (228)
T ss_pred             hHHHHHHh---chhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHH
Confidence            99999976   455577666655554444433311 11 2344 37888888888889999988877655 666776666


Q ss_pred             HHHHHHHHHhcC-C------hhhhHHhhhhHHHHhhhh
Q 021348          188 WAMLALELIFGN-P------LLPAILGMVAGHLYYFLT  218 (313)
Q Consensus       188 ~vll~~~~l~~~-~------~~~~l~GI~vGhlY~fL~  218 (313)
                      .+.++.+++.+. +      ...|+.|++.|-+|..+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~  209 (228)
T COG0705         172 LIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALL  209 (228)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            666777777642 1      588999999999997653

>PTZ00101 rhomboid-1 protease; Provisional

Probab=98.83  E-value=5.6e-09  Score=98.45  Aligned_cols=96  Identities=10%  Similarity=0.193  Sum_probs=69.5

Q ss_pred             ccchHHHHHHHHHHHHHHHHHc-C---ccCcc--c---e-eeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHH
Q 021348           42 SLPPVSKTYGVACLMATAAFYL-Q---LYNPK--N---I-ALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKY  111 (313)
Q Consensus        42 ~iPpVTR~~~~~~v~~sll~~~-g---~i~p~--~---L-~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~y  111 (313)
                      +||.+|.++++..+++.++... +   ...|.  .   + .++++.+ +++|+||++|+.|.|++ .+|+++||+++|..
T Consensus        51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~-~~HLl~Nm~~l~~~  128 (278)
T PTZ00101         51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHAN-IFHTFFNVFFQLRM  128 (278)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccC-HHHHHHHHHHHHHH
Confidence            6799999999999988776543 2   12232  1   1 2345555 56899999999999988 89999999999999


Q ss_pred             hHhhccCCCCCCchhHHHHHHHHHHHHHHHH
Q 021348          112 GVSLERGPFDKRTADYLWMLMFGALSLLVMA  142 (313)
Q Consensus       112 s~~LE~~~F~~~~adyl~~llf~~~~i~lla  142 (313)
                      +..+|+..   ++..|+...++++++-.+++
T Consensus       129 G~~lE~~~---G~~r~~ilYl~sGi~G~l~s  156 (278)
T PTZ00101        129 GFTLEKNY---GIVKIIILYFLTGIYGNILS  156 (278)
T ss_pred             HHHHHHHH---ChHHHHHHHHHHHHHHHHHH
Confidence            99999986   46667733344444444444

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.76  E-value=1.1e-08  Score=94.38  Aligned_cols=185  Identities=21%  Similarity=0.360  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCccCccceeeehHHHHhc-ceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCCC
Q 021348           45 PVSKTYGVACLMATAAFYLQLYNPKNIALKYEDVIKR-FQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKR  123 (313)
Q Consensus        45 pVTR~~~~~~v~~sll~~~g~i~p~~L~l~~~~v~~~-~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~~  123 (313)
                      ||||.+++.+.+.++.....-..+ .+.+++++++.+ +|+||++-+-|++.. .-..++.+|.+| +.+.+|+..   +
T Consensus        12 pVTK~~~iT~~~~~vvagI~~~k~-~f~l~y~~~l~~y~qywrlL~~qF~~~n-~~e~~~~l~I~Y-~fR~~ERlL---G   85 (323)
T KOG4463|consen   12 PVTKAFVITSALFTVVAGIQGRKS-KFGLSYQDILEKYFQYWRLLMSQFAFSN-TPELMFGLYILY-YFRVFERLL---G   85 (323)
T ss_pred             chHHHHHHHHHHHHHHHHhhhccc-ccccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHH-HHHHHHHHh---c
Confidence            599999999988888776533443 355777777765 899999999999877 789999999999 669999976   4


Q ss_pred             chhHHHHHHHHHHHHH----HHHhhc---CCCCCCch-HHHHHHHHHhhhccCCCc-eEEEEEeeeeccchHHHHH-HHH
Q 021348          124 TADYLWMLMFGALSLL----VMAAIP---PLRTPFMG-PSLVFMMVYIWGREFPNA-RISIYGVVSLKGFYLPWAM-LAL  193 (313)
Q Consensus       124 ~adyl~~llf~~~~i~----lla~~~---~~~~~fl~-~~l~~al~YvWsr~np~~-~v~~~gli~ika~yLP~vl-l~~  193 (313)
                      +..|+-++++.++.-+    ++..+.   ..+.-.+. .+|+++..|-.--.-|-. -+..|+ +++..|..-++. .+.
T Consensus        86 Shky~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~~qp~~liFa~~~~~y~~ip~~~f~r~f~-~~f~dkni~~i~~~G~  164 (323)
T KOG4463|consen   86 SHKYSVFIVFSGTVSLLLEVILLSLLKDTTANLLTSQPYGLIFASFIPFYLDIPVSTFFRVFG-VNFSDKNISFIYLAGV  164 (323)
T ss_pred             cccceeehhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeeeeccceEEEecceeEEEeec-ccccccceeeecccch
Confidence            5566666555544322    222210   01111111 246666665554444532 334453 455555322222 223


Q ss_pred             HHHhcC-------------ChhhhHHhhhhHHHHhhhhhcccCCCCccCccChHHHHHHhhh
Q 021348          194 ELIFGN-------------PLLPAILGMVAGHLYYFLTVLHPLAGGKYIFKTPLFVHKLVAF  242 (313)
Q Consensus       194 ~~l~~~-------------~~~~~l~GI~vGhlY~fL~~i~P~~gg~~~l~tP~~l~~l~~~  242 (313)
                      .+....             +...-++|++.+|+|..=      .-|..--++|.++-..+++
T Consensus       165 a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~~------~agi~~~~~~~~~~~f~d~  220 (323)
T KOG4463|consen  165 ALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRLN------IAGIRKAKFPEFVASFFDR  220 (323)
T ss_pred             hhhcCcccccccccceeecccccccchhhhhhHhhcc------cccccccccHHHHHhhhcc
Confidence            222211             236678999999999642      2356666888888887764

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.72  E-value=2.6e-09  Score=89.65  Aligned_cols=136  Identities=21%  Similarity=0.303  Sum_probs=79.8

Q ss_pred             hcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCC-CCc-hHHHH
Q 021348           80 KRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRT-PFM-GPSLV  157 (313)
Q Consensus        80 ~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~~~adyl~~llf~~~~i~lla~~~~~~~-~fl-~~~l~  157 (313)
                      ++.|+||++|+.|.|.+ ..|+++|++.++.++..+|+..   ++.+++...+.+.++..++..+..... ... .++.+
T Consensus         2 ~~~~~wrl~T~~f~h~~-~~hl~~n~~~l~~~g~~lE~~~---G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~   77 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHAN-FLHLLFNLLALWFFGSLLERRL---GSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAV   77 (145)
T ss_dssp             GCC-TTHHHHGGG--SS-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHH
T ss_pred             CCCcchhhhHHHHHccC-HHHHHHHHHHHHHhhhhHhhhc---cchHHHHHHHHHHHhhhhccccccccccccCCCcccc
Confidence            57899999999999988 8999999999999999999986   456666555544444333332211111 223 35555


Q ss_pred             HHHHHhhhccCCCceEEE---EEeeeeccchHHHHHHHHHHHhcCChhhhHHhhhhHHHHhhhhhc
Q 021348          158 FMMVYIWGREFPNARISI---YGVVSLKGFYLPWAMLALELIFGNPLLPAILGMVAGHLYYFLTVL  220 (313)
Q Consensus       158 ~al~YvWsr~np~~~v~~---~gli~ika~yLP~vll~~~~l~~~~~~~~l~GI~vGhlY~fL~~i  220 (313)
                      .+++-......|..+...   +..+.+...++++.++... ....+...|+.|+++|.+|.++-..
T Consensus        78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~~~  142 (145)
T PF01694_consen   78 FGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLILR  142 (145)
T ss_dssp             HHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555444444332211   1223344444443333222 1223569999999999999876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=97.44  E-value=5.5e-05  Score=72.55  Aligned_cols=140  Identities=16%  Similarity=0.198  Sum_probs=85.1

Q ss_pred             eehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCCCC-
Q 021348           73 LKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALSLLVMAAIPPLRTPF-  151 (313)
Q Consensus        73 l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~~~adyl~~llf~~~~i~lla~~~~~~~~f-  151 (313)
                      ..+....++.|+||++|+.+.|.+ -+|+++|++.+-..|..||+.+  |-..=.+.|++ +++.-.+++.+..-+.+. 
T Consensus       108 ~~i~~~~~r~E~WRllTym~LHaG-i~HL~~N~~~ql~iGi~LE~~~--G~~RiglIYl~-gg~aGSlls~l~d~~~~sV  183 (316)
T KOG2289|consen  108 LLIYKPVHRGELWRLLTYMWLHAG-IFHLLLNMLSQLFIGIPLEQVH--GFLRIGLIYLA-GGVAGSLLSSLFDPNSISV  183 (316)
T ss_pred             ceecChhhhchhHHHHHHHHHhcC-HHHHHHHHHHHHhccccHHhhc--CceEEeeehhh-hhhhhHHHHHHhccCCcee
Confidence            344456677899999999999988 8999999999999999999976  21222234444 333333333331111212 


Q ss_pred             --------chHHHHHHHHHhhhccCCCceEEEEEeeeeccchHHHHHHHHHHHhcC----ChhhhHHhhhhHHHHhhhhh
Q 021348          152 --------MGPSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPWAMLALELIFGN----PLLPAILGMVAGHLYYFLTV  219 (313)
Q Consensus       152 --------l~~~l~~al~YvWsr~np~~~v~~~gli~ika~yLP~vll~~~~l~~~----~~~~~l~GI~vGhlY~fL~~  219 (313)
                              |-.+.+.-++--|........          +.-.-.+++++++-++.    ..+.|+-|.+.|-.+-|+..
T Consensus       184 GASggvfaLlgA~Ls~l~~Nw~~m~~~~~----------~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~  253 (316)
T KOG2289|consen  184 GASGGVFALLGAHLSNLLTNWTIMKNKFA----------ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLH  253 (316)
T ss_pred             cccHHHHHHHHHHHHHHHhhHHHhcchHH----------HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhh
Confidence                    223444555555554332211          22222233355555553    23678889999999998887


Q ss_pred             cccCCCC
Q 021348          220 LHPLAGG  226 (313)
Q Consensus       220 i~P~~gg  226 (313)
                      +-|..+|
T Consensus       254 ~~g~~~~  260 (316)
T KOG2289|consen  254 IGGQLGG  260 (316)
T ss_pred             hccceeE
Confidence            7777543

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=97.43  E-value=0.00025  Score=67.13  Aligned_cols=177  Identities=18%  Similarity=0.213  Sum_probs=113.0

Q ss_pred             hcccchHHHHHHHHHHHHHHHHHcCc-----cCccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHh
Q 021348           40 YNSLPPVSKTYGVACLMATAAFYLQL-----YNPKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVS  114 (313)
Q Consensus        40 ~~~iPpVTR~~~~~~v~~sll~~~g~-----i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~  114 (313)
                      ..+.-++-++++++.+...+.+..+.     ..|. +.+-+..++  +.+|+++|+.|+--. -+..+.++..+--+|+.
T Consensus        21 l~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p~-y~lvp~~~~--~~~WtliTs~fie~~-vw~V~~sv~~L~v~G~~   96 (326)
T KOG2890|consen   21 LLNLEVVVSAICVLTLFGYILSFGNFTILLATLPG-YQLVPNALF--FFPWTLITSGFIELN-VWDVLVSVLTLSVGGKF   96 (326)
T ss_pred             hhhchhHHHHHHHHHHHHHHHHHHHhHHHHHhccc-cccCCcchh--hhhHHHHhcchhhhh-HHHHHHHHHheeeccee
Confidence            34445566666655555544443311     1221 234455555  489999999998544 79999999999999999


Q ss_pred             hccCCCCCCchhHHHHH-HHHHHH---HHHHHhhcC---CCC-----CCc-hHHHHHHHHHhhhccCCCceEEEEEeeee
Q 021348          115 LERGPFDKRTADYLWML-MFGALS---LLVMAAIPP---LRT-----PFM-GPSLVFMMVYIWGREFPNARISIYGVVSL  181 (313)
Q Consensus       115 LE~~~F~~~~adyl~~l-lf~~~~---i~lla~~~~---~~~-----~fl-~~~l~~al~YvWsr~np~~~v~~~gli~i  181 (313)
                      ||...   +..+++.+. +..++.   +++.+.+.|   -+.     ++- ..+.+..++..|-|.-||..|.--=.-++
T Consensus        97 lEp~W---g~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r~  173 (326)
T KOG2890|consen   97 LEPNW---GSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSGRF  173 (326)
T ss_pred             eccCC---CCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccchhh
Confidence            99988   455565443 333221   112222211   121     221 25888889999999999998854322334


Q ss_pred             ccchHHHHHHHHHHHhc-------CChhhhHHhhhhHHHHhhhhhcccC
Q 021348          182 KGFYLPWAMLALELIFG-------NPLLPAILGMVAGHLYYFLTVLHPL  223 (313)
Q Consensus       182 ka~yLP~vll~~~~l~~-------~~~~~~l~GI~vGhlY~fL~~i~P~  223 (313)
                      +++-+|...++++++..       .++..-..|..++..|.++...+|.
T Consensus       174 ~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~~  222 (326)
T KOG2890|consen  174 LYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHPT  222 (326)
T ss_pred             hhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCCc
Confidence            44449988887766653       3445666899999999999888883

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=94.97  E-value=0.015  Score=46.75  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=43.9

Q ss_pred             eeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCCCCCCchhHHHHHHHHHHH
Q 021348           83 QVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGPFDKRTADYLWMLMFGALS  137 (313)
Q Consensus        83 QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~F~~~~adyl~~llf~~~~  137 (313)
                      ..|+++|+.|+... .+.++++...+...++.||+..   ++.+++.|+++..++
T Consensus         7 ~pWtl~T~~fve~~-i~~~l~~~~~l~~~g~~lE~~W---Gs~E~lkFi~vv~~~   57 (99)
T PF08551_consen    7 YPWTLFTAGFVETN-IIGLLFSLLTLFYGGRYLEPIW---GSREFLKFILVVNVI   57 (99)
T ss_pred             ehHHHHHHHHHHhH-HHHHHHHHHHHHHhhHHHHHhc---ChHHHHHHHHHHHHH
Confidence            69999999999866 8999999999999999999988   478899887765443

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.49
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.23

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.49  E-value=3.3e-14  Score=124.29  Aligned_cols=167  Identities=16%  Similarity=0.194  Sum_probs=109.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHcCccC--ccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCC
Q 021348           42 SLPPVSKTYGVACLMATAAFYLQLYN--PKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGP  119 (313)
Q Consensus        42 ~iPpVTR~~~~~~v~~sll~~~g~i~--p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~  119 (313)
                      +.||||+.+++.|+++.++..+.-..  ..++.++++. .++.|+||++|+.|.|++ .+|+++||+.++.+++.+|+..
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~-~~Hl~~Nm~~l~~~g~~~E~~~   79 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKRL   79 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHHh
Confidence            56999999999999999887653211  1234455553 456799999999999998 6999999999999999999976


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCch-HHHHHHH-HH--hhhccCCCceEEEEEeeeeccchHHHHHHHHHH
Q 021348          120 FDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMG-PSLVFMM-VY--IWGREFPNARISIYGVVSLKGFYLPWAMLALEL  195 (313)
Q Consensus       120 F~~~~adyl~~llf~~~~i~lla~~~~~~~~fl~-~~l~~al-~Y--vWsr~np~~~v~~~gli~ika~yLP~vll~~~~  195 (313)
                         ++.+|+.+.+.+++...+.+.+. .+....| ++.++.+ .+  +.++++|+.++.    ++.+...+-.+.+++++
T Consensus        80 ---G~~~fl~~yl~~~i~~~l~~~~~-~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~~~~~~~~~~~  151 (181)
T 2xov_A           80 ---GSGKLIVITLISALLSGYVQQKF-SGPWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLIIFALIWIVAGW  151 (181)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHH-HCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHHHHHHHHHHHH
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHHh-cCCCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHHHHHHHHHHHH
Confidence               47788876666655444444331 1222333 3333222 22  236778887653    23333222222233443


Q ss_pred             Hh----cCChhhhHHhhhhHHHHhhhh
Q 021348          196 IF----GNPLLPAILGMVAGHLYYFLT  218 (313)
Q Consensus       196 l~----~~~~~~~l~GI~vGhlY~fL~  218 (313)
                      ..    +-+...|+.|+++|.++-++.
T Consensus       152 ~~~~~~~v~~~aHlgG~l~G~l~~~~~  178 (181)
T 2xov_A          152 FDLFGMSMANGAHIAGLAVGLAMAFVD  178 (181)
T ss_dssp             TTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccchHHHHHHHHHHHHHHHHHH
Confidence            32    224699999999999997653

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.23  E-value=8.7e-12  Score=110.21  Aligned_cols=167  Identities=14%  Similarity=0.199  Sum_probs=108.0

Q ss_pred             cccchHHHHHHHHHHHHHHHHHcCccC--ccceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccC
Q 021348           41 NSLPPVSKTYGVACLMATAAFYLQLYN--PKNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERG  118 (313)
Q Consensus        41 ~~iPpVTR~~~~~~v~~sll~~~g~i~--p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~  118 (313)
                      .+.||||+.+++.|+++.++..+.-..  ..++.++++.+ .+.|+||++|+.|.|++ .+|+++||+.++..+..+|+.
T Consensus         6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~-~~Hl~~Nm~~l~~~G~~lE~~   83 (196)
T 2nr9_A            6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERT   83 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHH
Confidence            356999999999999999887653111  12345666555 56799999999999988 899999999999999999997


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCch-HHHHHHHH-Hh--hhccCCCceEEEEEeeeeccchHHHHHHHHH
Q 021348          119 PFDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMG-PSLVFMMV-YI--WGREFPNARISIYGVVSLKGFYLPWAMLALE  194 (313)
Q Consensus       119 ~F~~~~adyl~~llf~~~~i~lla~~~~~~~~fl~-~~l~~al~-Yv--Wsr~np~~~v~~~gli~ika~yLP~vll~~~  194 (313)
                      .   ++..|+.+.+.+++...+.+.+. .+....| ++.+++++ +.  ..+.+|+. +    .++.+...+-.+.++++
T Consensus        84 ~---G~~~~l~~yl~~~~~~~l~~~~~-~~~~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~  154 (196)
T 2nr9_A           84 F---GSVKLLMLYVVASAITGYVQNYV-SGPAFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFFTMLLVGIALG  154 (196)
T ss_dssp             H---CHHHHHHHHHHHHHHHHHHHHHH-HCSCCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSSTTTTTTTTTHH
T ss_pred             H---ChHHHHHHHHHHHHHHHHHHHHh-cCCCeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHHHHHHHHHHHH
Confidence            6   46777765555555443433331 1222332 33333222 22  24456655 2    23444443333334455


Q ss_pred             HHhc-----CChhhhHHhhhhHHHHhhhh
Q 021348          195 LIFG-----NPLLPAILGMVAGHLYYFLT  218 (313)
Q Consensus       195 ~l~~-----~~~~~~l~GI~vGhlY~fL~  218 (313)
                      ++..     -+...|+.|+++|.++-++.
T Consensus       155 ~~~~~~~~~v~~~aHlgG~l~G~l~~~~~  183 (196)
T 2nr9_A          155 FISPLFGVEMGNAAHISGLIVGLIWGFID  183 (196)
T ss_dssp             HHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence            5432     24699999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.3
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.26

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=6.1e-13  Score=113.37  Aligned_cols=168  Identities=18%  Similarity=0.230  Sum_probs=99.4

Q ss_pred             ccchHHHHHHHHHHHHHHHHHcCccCc--cceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCC
Q 021348           42 SLPPVSKTYGVACLMATAAFYLQLYNP--KNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGP  119 (313)
Q Consensus        42 ~iPpVTR~~~~~~v~~sll~~~g~i~p--~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~  119 (313)
                      +.+|||..+++.++++.++..+....+  ..+.++.+. .+++|+||++|+.|.|++ -+|+++||+.++..++.+|+..
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~-~~~g~~wrl~T~~f~H~~-~~Hl~~N~~~l~~~G~~lE~~~   79 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKRL   79 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCGGGGTGGGGCCCS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcc-cccCchHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHhc
Confidence            579999999999999888765422111  222333333 446799999999999988 8999999999999999999976


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCch-HHHHHH-HHHhhhc--cCCCceEEEEEeeeeccchHHHHHHHHHH
Q 021348          120 FDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMG-PSLVFM-MVYIWGR--EFPNARISIYGVVSLKGFYLPWAMLALEL  195 (313)
Q Consensus       120 F~~~~adyl~~llf~~~~i~lla~~~~~~~~fl~-~~l~~a-l~YvWsr--~np~~~v~~~gli~ika~yLP~vll~~~~  195 (313)
                         ++.+++...+.++++..++..+. .+....+ ++.+.+ +.+.+.+  ++|....    ..+.....+-++++...+
T Consensus        80 ---G~~~~~~~~~~~~~~g~l~~~~~-~~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  151 (180)
T d3b45a1          80 ---GSGKLIVITLISALLSGYVQQKF-SGPWFGGLSGVVYALMGYVWLRGERDPQSGI----YLQRGLIIFALIWIVAGW  151 (180)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHH-HCSCCCCSHHHHHHHHHHHHHHHHHCGGGSC----CCCHHHHHHHHHHHHHHH
T ss_pred             ---cchhheeeeeHHHHHHHHHHHHH-hccccccccchHHHHHHHHHHHhhhcchhHH----hhHHHHHHHHHHHHHHHH
Confidence               46667655555544433333331 1222222 222222 2333332  2222211    111111122222222222


Q ss_pred             Hh--cC--ChhhhHHhhhhHHHHhhhhh
Q 021348          196 IF--GN--PLLPAILGMVAGHLYYFLTV  219 (313)
Q Consensus       196 l~--~~--~~~~~l~GI~vGhlY~fL~~  219 (313)
                      ..  +.  +...|+.|+++|.++.++.+
T Consensus       152 ~~~~~~~v~~~aHlgG~l~G~~~~~~~~  179 (180)
T d3b45a1         152 FDLFGMSMANGAHIAGLAVGLAMAFVDS  179 (180)
T ss_dssp             TTSSCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhccCchHHHHHHHHHHHHHHHHHHHH
Confidence            11  11  34889999999999988764

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=3.4e-13  Score=116.12  Aligned_cols=170  Identities=14%  Similarity=0.139  Sum_probs=105.8

Q ss_pred             cccchHHHHHHHHHHHHHHHHHcCccCc-cceeeehHHHHhcceeeeEeeeccccCCccHHHHHHHHHHHHHhHhhccCC
Q 021348           41 NSLPPVSKTYGVACLMATAAFYLQLYNP-KNIALKYEDVIKRFQVWRVVTNFFFLGPFSFRFAFRLIIIAKYGVSLERGP  119 (313)
Q Consensus        41 ~~iPpVTR~~~~~~v~~sll~~~g~i~p-~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~~~~lf~ly~ly~ys~~LE~~~  119 (313)
                      .+.+|||..+++.|+++.++...+...+ ..+...+.....+.|+||++|+.|.|.+ .+|+++|++.++..+..+|+..
T Consensus         3 ~~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~-~~Hl~~N~~~l~~~g~~~E~~~   81 (189)
T d2nr9a1           3 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERTF   81 (189)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999998887653332 2223333445567899999999999988 8999999999999999999976


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCch-HHHHHHHHHhhhccCCCceEEEEEeeeeccchHHH--HHHHHHHH
Q 021348          120 FDKRTADYLWMLMFGALSLLVMAAIPPLRTPFMG-PSLVFMMVYIWGREFPNARISIYGVVSLKGFYLPW--AMLALELI  196 (313)
Q Consensus       120 F~~~~adyl~~llf~~~~i~lla~~~~~~~~fl~-~~l~~al~YvWsr~np~~~v~~~gli~ika~yLP~--vll~~~~l  196 (313)
                         ++.+++...+.++++..++.... .+....| ++.+++++-.+.-..+..+..+    .++...+..  +.+++.++
T Consensus        82 ---G~~~~~~~~~~~~~~~~l~~~~~-~~~~~vGaSG~v~gl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  153 (189)
T d2nr9a1          82 ---GSVKLLMLYVVASAITGYVQNYV-SGPAFFGLSGVVYAVLGYVFIRDKLNHHLF----DLPEGFFTMLLVGIALGFI  153 (189)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHH-HCSCCCCSHHHHHHHHHHHHHHHHSSTTSC----CCCCSSTTTTTTTTTHHHH
T ss_pred             ---HHHhhhhHHHHHHHHHHHHHHhc-CCCCcccchHHHHHHHHHHHHHHHHhhhHh----ccHHHHHHHHHHHHHHHHH
Confidence               57777655444444333333221 2233343 4445554432322222221111    122222222  22234444


Q ss_pred             hc---C--ChhhhHHhhhhHHHHhhhhh
Q 021348          197 FG---N--PLLPAILGMVAGHLYYFLTV  219 (313)
Q Consensus       197 ~~---~--~~~~~l~GI~vGhlY~fL~~  219 (313)
                      ..   .  +...|+.|+++|.+|.++..
T Consensus       154 ~~~~~~~v~~~aHl~G~l~G~~~g~~~~  181 (189)
T d2nr9a1         154 SPLFGVEMGNAAHISGLIVGLIWGFIDS  181 (189)
T ss_dssp             SCSSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence            32   1  34899999999999987654