Citrus Sinensis ID: 021349

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
MNDLMTKSFTSYVDLKKEAMKDLEAGPDPDLEMTTSTNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLIVIPIATSFSSS
cccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccc
ccccccHHHHHHHHccHHcHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHccccHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MNDLMTKSFTSYVDLKKEAMkdleagpdpdlemttstntMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEAneqskslhkpEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKrlsgckegtpiyrtRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFtvtgeypnedVIEKIIsdnngseeFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLIVIpiatsfsss
mndlmtksFTSYVDLKKEAMKDLEAGPDPDLEMTTSTNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQeaneqskslhkpealkllrhkinKDVVTVLKRARnikshledmdranaankrlsgckegtpiyrtriavtnGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTvtgeypnedVIEKIISDNNGSEEFLTHAiqehgrgkVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNAShyvkdgtkeLKTAKDYQRSNRKWMCVGIILLLLIILLIVIPIATSFSSS
MNDLMTKSFTSYVDLKKEAMKDLEAGPDPDLEMTTSTNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGiilllliilliviPIATSFSSS
**********************************************F************************************LKLLRHKINKDVVTVLKRARNI******************GCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLIVIPIAT*****
MNDLMTK***************************************FLAEAENVKKEMEEIRDVLGRLQE****************************LKRARNIKSHLE**************************AVTNGLRKKLKELMMEFQG*************************************************************EIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLIVIPIATSFSS*
MNDLMTKSFTSYVDLKKEAMKDLEAGPDPDLEMTTSTNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLIVIPIATSFSSS
****MTKSFTSYVDLKKEA**********************QNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANK******EGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLIVIPIATSFS**
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MNDLMTKSFTSYVDLKKEAMKDLEAGPDPDLEMTTSTNTMDQNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLSGCKEGTPIYRTRIAVxxxxxxxxxxxxxxxxxxxxxMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLIVIPIATSFSSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query313 2.2.26 [Sep-21-2011]
Q42374310 Syntaxin-related protein yes no 0.987 0.996 0.716 1e-119
O64791303 Syntaxin-124 OS=Arabidops no no 0.932 0.963 0.496 7e-83
Q9ZQZ8305 Syntaxin-123 OS=Arabidops no no 0.945 0.970 0.485 2e-74
Q9SXB0298 Syntaxin-125 OS=Arabidops no no 0.869 0.912 0.484 8e-73
Q9ZSD4346 Syntaxin-121 OS=Arabidops no no 0.920 0.832 0.491 1e-71
Q9SVC2341 Syntaxin-122 OS=Arabidops no no 0.904 0.829 0.454 5e-65
Q9SRV7306 Putative syntaxin-131 OS= no no 0.891 0.911 0.401 3e-57
Q9ZPV9305 Syntaxin-112 OS=Arabidops no no 0.948 0.973 0.382 1e-56
Q8VZU2304 Syntaxin-132 OS=Arabidops no no 0.891 0.917 0.420 1e-53
Q24547291 Syntaxin-1A OS=Drosophila yes no 0.840 0.903 0.271 2e-19
>sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1 Back     alignment and function desciption
 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/314 (71%), Positives = 272/314 (86%), Gaps = 5/314 (1%)

Query: 1   MNDLMTKSFTSYVDLKKEAMKDLEAGPDPDLEM-TTSTNTMDQNLNLFLAEAENVKKEME 59
           MNDLMTKSF SYVDLKK AMKD+EAGPD DLEM +T  + MD+NL+ FL EAE VK EM 
Sbjct: 1   MNDLMTKSFMSYVDLKKAAMKDMEAGPDFDLEMASTKADKMDENLSSFLEEAEYVKAEMG 60

Query: 60  EIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAAN 119
            I + L R+++ +E+SK +HK E++K LR+KI+ ++V+ L++A++IKS LE+MD+AN   
Sbjct: 61  LISETLARIEQYHEESKGVHKAESVKSLRNKISNEIVSGLRKAKSIKSKLEEMDKANKEI 120

Query: 120 KRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEY 179
           KRLSG    TP+YR+R AVTNGLRKKLKE+MMEFQGLRQKMM+EYKETV RRYFTVTGE+
Sbjct: 121 KRLSG----TPVYRSRTAVTNGLRKKLKEVMMEFQGLRQKMMSEYKETVERRYFTVTGEH 176

Query: 180 PNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIF 239
            N+++IEKII+DN G EEFLT AIQEHG+GKVLETVVEIQDR+D AKEIEKSLLELHQ+F
Sbjct: 177 ANDEMIEKIITDNAGGEEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVF 236

Query: 240 LDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLII 299
           LDMAVMVE+QGEQMD+IEHHV+NASHYV DG  ELKTAK +QR++RKWMC+GII+LLLII
Sbjct: 237 LDMAVMVESQGEQMDEIEHHVINASHYVADGANELKTAKSHQRNSRKWMCIGIIVLLLII 296

Query: 300 LLIVIPIATSFSSS 313
           L++VIPI TSFSSS
Sbjct: 297 LIVVIPIITSFSSS 310
Involved in cytokinesis. Act as a cell plate-specific syntaxin, required for the fusion of vesicles at the plane of cell division.
Arabidopsis thaliana (taxid: 3702)
>sp|O64791|SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQZ8|SY123_ARATH Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXB0|SY125_ARATH Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSD4|SY121_ARATH Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVC2|SY122_ARATH Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1 Back     alignment and function description
>sp|Q9SRV7|SY131_ARATH Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZPV9|SY112_ARATH Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2 Back     alignment and function description
>sp|Q8VZU2|SY132_ARATH Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1 Back     alignment and function description
>sp|Q24547|STX1A_DROME Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
255569004313 syntaxin, putative [Ricinus communis] gi 1.0 1.0 0.856 1e-147
224125800313 predicted protein [Populus trichocarpa] 1.0 1.0 0.830 1e-141
225429832311 PREDICTED: syntaxin-related protein KNOL 0.993 1.0 0.805 1e-138
224145946313 predicted protein [Populus trichocarpa] 1.0 1.0 0.808 1e-136
356559528322 PREDICTED: syntaxin-related protein KNOL 0.996 0.968 0.749 1e-128
147860328298 hypothetical protein VITISV_027502 [Viti 0.952 1.0 0.763 1e-126
5912543311 Knolle [Capsicum annuum] 0.987 0.993 0.746 1e-126
28974542307 knolle [Antirrhinum majus] 0.980 1.0 0.744 1e-123
449459592309 PREDICTED: syntaxin-related protein KNOL 0.980 0.993 0.758 1e-122
357481947320 Knolle [Medicago truncatula] gi|35551259 0.996 0.975 0.747 1e-121
>gi|255569004|ref|XP_002525472.1| syntaxin, putative [Ricinus communis] gi|223535285|gb|EEF36962.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 268/313 (85%), Positives = 294/313 (93%)

Query: 1   MNDLMTKSFTSYVDLKKEAMKDLEAGPDPDLEMTTSTNTMDQNLNLFLAEAENVKKEMEE 60
           MNDLMTKSFTSYVDLKKEAM+DLEAGPDPDLEM  ++NTMD+NL LFL EAENVKKEME 
Sbjct: 1   MNDLMTKSFTSYVDLKKEAMRDLEAGPDPDLEMANASNTMDRNLGLFLEEAENVKKEMES 60

Query: 61  IRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANK 120
           IRDVL RLQE+NE+SKSLHKPEALKLLR+KIN D+VTV K+AR IK+ LE+MDRANAAN+
Sbjct: 61  IRDVLVRLQESNEESKSLHKPEALKLLRNKINADIVTVQKKARAIKTQLEEMDRANAANR 120

Query: 121 RLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYP 180
           RLSG KEGTPIYRTR+AVTNGLRKKLKELMM+FQGLRQKMMTEYKETVGRRYFTVTGEYP
Sbjct: 121 RLSGFKEGTPIYRTRVAVTNGLRKKLKELMMDFQGLRQKMMTEYKETVGRRYFTVTGEYP 180

Query: 181 NEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFL 240
           +E++I+KIISD NG EEFL  AIQEHG+GKVLETVVEIQDRHD AKEIEKSLLELHQ+FL
Sbjct: 181 DEEIIDKIISDGNGGEEFLKCAIQEHGKGKVLETVVEIQDRHDAAKEIEKSLLELHQVFL 240

Query: 241 DMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIIL 300
           DMAVMVEAQGEQ+DDIEHHV+NASHYVKDG KELKTAKDYQR +RKWMC+GIILLL+IIL
Sbjct: 241 DMAVMVEAQGEQLDDIEHHVLNASHYVKDGAKELKTAKDYQRGSRKWMCIGIILLLIIIL 300

Query: 301 LIVIPIATSFSSS 313
           +IVIPIATSFS S
Sbjct: 301 VIVIPIATSFSHS 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125800|ref|XP_002319678.1| predicted protein [Populus trichocarpa] gi|222858054|gb|EEE95601.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225429832|ref|XP_002283098.1| PREDICTED: syntaxin-related protein KNOLLE [Vitis vinifera] Back     alignment and taxonomy information
>gi|224145946|ref|XP_002325822.1| predicted protein [Populus trichocarpa] gi|222862697|gb|EEF00204.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356559528|ref|XP_003548051.1| PREDICTED: syntaxin-related protein KNOLLE-like [Glycine max] Back     alignment and taxonomy information
>gi|147860328|emb|CAN79713.1| hypothetical protein VITISV_027502 [Vitis vinifera] Back     alignment and taxonomy information
>gi|5912543|emb|CAB56195.1| Knolle [Capsicum annuum] Back     alignment and taxonomy information
>gi|28974542|emb|CAD78064.1| knolle [Antirrhinum majus] Back     alignment and taxonomy information
>gi|449459592|ref|XP_004147530.1| PREDICTED: syntaxin-related protein KNOLLE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357481947|ref|XP_003611259.1| Knolle [Medicago truncatula] gi|355512594|gb|AES94217.1| Knolle [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
TAIR|locus:2025620310 SYP111 "syntaxin of plants 111 0.987 0.996 0.684 7.8e-110
TAIR|locus:2197749303 SYP124 "syntaxin of plants 124 0.881 0.910 0.506 1.4e-71
TAIR|locus:2125487305 SYP123 "syntaxin of plants 123 0.894 0.918 0.494 3.8e-69
TAIR|locus:2081476346 SYP121 "syntaxin of plants 121 0.923 0.835 0.489 1.7e-68
TAIR|locus:2202049298 SYP125 "syntaxin of plants 125 0.865 0.909 0.489 1.3e-66
TAIR|locus:2079894341 SYP122 "syntaxin of plants 122 0.910 0.835 0.460 9e-61
TAIR|locus:2079449306 SYP131 "syntaxin of plants 131 0.894 0.915 0.4 4.8e-55
TAIR|locus:2062151305 SYP112 "syntaxin of plants 112 0.884 0.908 0.391 8e-53
FB|FBgn0013343291 Syx1A "Syntaxin 1A" [Drosophil 0.817 0.879 0.265 1.2e-24
DICTYBASE|DDB_G0270556334 syn1B "putative syntaxin 1" [D 0.821 0.769 0.273 2.3e-23
TAIR|locus:2025620 SYP111 "syntaxin of plants 111" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 215/314 (68%), Positives = 259/314 (82%)

Query:     1 MNDLMTKSFTSYVDLKKEAMKDLEAGPDPDLEM-TTSTNTMDQNLNLFLAEAENVKKEME 59
             MNDLMTKSF SYVDLKK AMKD+EAGPD DLEM +T  + MD+NL+ FL EAE VK EM 
Sbjct:     1 MNDLMTKSFMSYVDLKKAAMKDMEAGPDFDLEMASTKADKMDENLSSFLEEAEYVKAEMG 60

Query:    60 EIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAAN 119
              I + L R+++ +E+SK +HK E++K LR+KI+ ++V+ L++A++IKS LE+MD+AN   
Sbjct:    61 LISETLARIEQYHEESKGVHKAESVKSLRNKISNEIVSGLRKAKSIKSKLEEMDKANKEI 120

Query:   120 KRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEY 179
             KRLSG    TP+YR+R AVTNGLRKKLKE+MMEFQGLRQKMM+EYKETV RRYFTVTGE+
Sbjct:   121 KRLSG----TPVYRSRTAVTNGLRKKLKEVMMEFQGLRQKMMSEYKETVERRYFTVTGEH 176

Query:   180 PNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIF 239
              N+++IEKII+DN G EEFLT AIQEHG+GKVLETVVEIQDR+D AKEIEKSLLELHQ+F
Sbjct:   177 ANDEMIEKIITDNAGGEEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVF 236

Query:   240 LDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGXXXXXXXX 299
             LDMAVMVE+QGEQMD+IEHHV+NASHYV DG  ELKTAK +QR++RKWMC+G        
Sbjct:   237 LDMAVMVESQGEQMDEIEHHVINASHYVADGANELKTAKSHQRNSRKWMCIGIIVLLLII 296

Query:   300 XXXXXPIATSFSSS 313
                  PI TSFSSS
Sbjct:   297 LIVVIPIITSFSSS 310
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016020 "membrane" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0009504 "cell plate" evidence=IDA
GO:0012505 "endomembrane system" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000910 "cytokinesis" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
GO:0009524 "phragmoplast" evidence=IDA
TAIR|locus:2197749 SYP124 "syntaxin of plants 124" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125487 SYP123 "syntaxin of plants 123" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081476 SYP121 "syntaxin of plants 121" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202049 SYP125 "syntaxin of plants 125" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079894 SYP122 "syntaxin of plants 122" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079449 SYP131 "syntaxin of plants 131" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062151 SYP112 "syntaxin of plants 112" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0013343 Syx1A "Syntaxin 1A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270556 syn1B "putative syntaxin 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q42374SY111_ARATHNo assigned EC number0.71650.98720.9967yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 8e-35
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 1e-20
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 6e-18
pfam0573962 pfam05739, SNARE, SNARE domain 3e-16
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 3e-13
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 2e-12
pfam00804103 pfam00804, Syntaxin, Syntaxin 2e-11
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 2e-10
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score =  123 bits (311), Expect = 8e-35
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 47  FLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIK 106
           F  E E ++  +++I + +  LQ+ + Q  +    +    L+ ++   V  + K A+ IK
Sbjct: 4   FFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDAD--PELKQELESLVQEIKKLAKEIK 61

Query: 107 SHLEDMDRANAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKE 166
             L++++ +N  N+ L+G      + R R    +GL KK  E+M EF   ++K    YKE
Sbjct: 62  GKLKELEESNEQNEALNGS----SVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKE 117

Query: 167 TVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFL 199
            + R+     GE  +E++ + + S N  SE F 
Sbjct: 118 RIQRQLEITGGEATDEELEDMLESGN--SEIFT 148

Length = 151
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 313
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.97
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.91
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.84
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.8
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.54
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.48
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.43
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.3
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.21
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.17
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 98.44
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.34
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.75
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.55
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.12
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 96.88
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 96.76
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 95.99
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 95.71
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 95.46
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 94.65
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 92.81
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 90.73
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 90.33
PRK10884206 SH3 domain-containing protein; Provisional 89.73
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 89.49
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 89.46
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 88.04
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 83.79
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 83.59
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 83.14
PF1291156 OppC_N: N-terminal TM domain of oligopeptide trans 80.07
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-53  Score=390.29  Aligned_cols=295  Identities=41%  Similarity=0.627  Sum_probs=259.7

Q ss_pred             CCcchhhhhhchhhhhhhhhhhhcCCCCCCccccccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 021349            1 MNDLMTKSFTSYVDLKKEAMKDLEAGPDPDLEMTTSTNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHK   80 (313)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~   80 (313)
                      |||+++.+|.+|++...+.- |.+ |.      +.+ +..+..|..||..|++|+..|..+...+.+|..+|.+.  +.+
T Consensus         1 M~d~~~~~~~~~~~~~~e~~-~~~-~~------~~~-~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~--l~~   69 (297)
T KOG0810|consen    1 MNDRLSELLARSVSEDNELD-DVE-GH------TGS-ADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKS--LHS   69 (297)
T ss_pred             CccccHHHHcCchhhccccc-ccc-cc------cCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--hcc
Confidence            89999999999974333222 333 22      222 23448899999999999999999999999999999654  556


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349           81 PEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKM  160 (313)
Q Consensus        81 ~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~  160 (313)
                      +...+.++++++.++.++.+.++.|+..|+.+++++...+..++|   ++..|+|++++..+.++|.++|++|+.++.+|
T Consensus        70 ~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~---~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~  146 (297)
T KOG0810|consen   70 PNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRS---SAGLRTRRTQTSALSKKLKELMNEFNRTQSKY  146 (297)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667789999999999999999999999999999998764443333   34578999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccccCCCCChhHHHHHhhCCCCchHHhHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349          161 MTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFL  240 (313)
Q Consensus       161 ~~~yk~~i~Rr~~~v~~~~~s~eeie~~ie~g~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~  240 (313)
                      +..|+++++|||.++.+..+++++++.++++|+ ++.|++..+.  ++++++..+.++++||.+|++||++|.|||+||.
T Consensus       147 r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~-~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFl  223 (297)
T KOG0810|consen  147 REEYKERIQRQLFIVGGEETTDEEIEEMIESGG-SEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFL  223 (297)
T ss_pred             HHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCC-hHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998776655899999999999987 7778887776  4667789999999999999999999999999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhccCCC
Q 021349          241 DMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNRKWMCVGIILLLLIILLIVIPIATSFSS  312 (313)
Q Consensus       241 ~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~~~~~~ii~~ii~~~i~~~~~~  312 (313)
                      |||.||+.||+|||+||+||.+|.+||++|..++.+|.+||+++|||+||+|++++|+++++++|+++||+.
T Consensus       224 DMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~~~~  295 (297)
T KOG0810|consen  224 DMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVPLVL  295 (297)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhcccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999975

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
2xhe_B279 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 2e-16
3c98_B279 Revised Structure Of The Munc18a-Syntaxin1 Complex 8e-13
3hd7_B109 Helical Extension Of The Neuronal Snare Complex Int 9e-10
1jth_B77 Crystal Structure And Biophysical Properties Of A C 1e-09
1hvv_A75 Self-Association Of The H3 Region Of Syntaxin 1a: I 2e-09
1sfc_B83 Neuronal Synaptic Fusion Complex Length = 83 2e-09
1l4a_B88 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 5e-09
1urq_B75 Crystal Structure Of Neuronal Q-Snares In Complex W 7e-09
1n7s_B68 High Resolution Structure Of A Truncated Neuronal S 7e-08
3rk2_B65 Truncated Snare Complex Length = 65 2e-07
1kil_B62 Three-Dimensional Structure Of The ComplexinSNARE C 4e-07
1fio_A196 Crystal Structure Of Yeast T-Snare Protein Sso1 Len 1e-06
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 1e-05
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279 Back     alignment and structure 
Iteration: 1

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 122/234 (52%), Gaps = 16/234 (6%)
Query: 61  IRDVLGRLQEANEQSKSLHKPEALKLL---RHKINKDVVTVLKR----ARNIKSHLEDMD 113
           IRD +  +++A EQ   LH    + +    R ++N+ +   + R       I++ L+ ++
Sbjct: 53  IRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIE 112
Query: 114 RANAANKRLSGCKEGTPI--YRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRR 171
           + N   ++    ++GT     R R +  + L +K  ++M  +  ++ +    Y E V R+
Sbjct: 113 KENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ 172
Query: 172 YFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKS 231
              V     ++D I+K+I   +G+E   +    E    K+     EI+DRH   +++E+S
Sbjct: 173 CRVVEPSL-SDDAIQKVI--EHGTEGIFSGMRLEGAEAKL----NEIRDRHKDIQQLERS 225
Query: 232 LLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNR 285
           LLELH++F DM+ +V +QGE +D IE  V  + +YVK  T+++  A+ YQ S R
Sbjct: 226 LLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279 Back     alignment and structure
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109 Back     alignment and structure
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77 Back     alignment and structure
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75 Back     alignment and structure
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83 Back     alignment and structure
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88 Back     alignment and structure
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75 Back     alignment and structure
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68 Back     alignment and structure
>pdb|3RK2|B Chain B, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 62 Back     alignment and structure
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1 Length = 196 Back     alignment and structure
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 2e-51
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 1e-48
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 2e-37
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 6e-31
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 4e-27
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 4e-26
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 1e-23
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 2e-23
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 3e-21
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 4e-21
1s94_A180 S-syntaxin; three helix bundle, structural plastic 4e-21
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
 Score =  169 bits (430), Expect = 2e-51
 Identities = 62/274 (22%), Positives = 129/274 (47%), Gaps = 9/274 (3%)

Query: 14  DLKKEAMKDLEAGPDPDLEMTTSTNTMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANE 73
           + +     D   G +  +E T+ +   +  +  F    + ++  +E+I   + ++ + + 
Sbjct: 13  ENQPAEASDAAGGAEAQIEETSLSAQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHT 72

Query: 74  QSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKRLSGCKEGTP--I 131
           +S      E    L  K+   +  +      I++ L+ +++ N   ++    ++GT    
Sbjct: 73  ESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTD 132

Query: 132 YRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISD 191
            R R +  + L +K  ++M  +  ++ +    Y E V R+   V     ++ + + I   
Sbjct: 133 LRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVI--- 189

Query: 192 NNGSEEFLTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGE 251
            +G+E   +    E         + EI+DRH   +++E+SLLELH++F DM+ +V +QGE
Sbjct: 190 EHGTEGIFSGMRLEGAE----AKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGE 245

Query: 252 QMDDIEHHVMNASHYVKDGTKELKTAKDYQRSNR 285
            +D IE  V  + +YVK  T+++  A+ YQ S R
Sbjct: 246 MIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Length = 180 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.97
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.95
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.9
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.9
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.87
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.85
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.85
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.84
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.79
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.77
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.76
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 98.84
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.37
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 97.31
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.18
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 97.18
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 97.11
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 96.99
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 96.94
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 96.58
3b5n_D64 Protein transport protein SEC9; snare complex, syn 96.52
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 94.7
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 94.14
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 93.14
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 93.13
3b5n_C70 Protein transport protein SEC9; snare complex, syn 91.94
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 91.0
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 86.87
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=5.3e-43  Score=321.54  Aligned_cols=243  Identities=22%  Similarity=0.379  Sum_probs=193.3

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349           39 TMDQNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAA  118 (313)
Q Consensus        39 ~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~  118 (313)
                      +++++|+.||+.|++|+..|..|..++..|..+|++.++.+  ...+.++.+|+.++.+|+++++.|+..|+.|+..+..
T Consensus        25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~--~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~  102 (267)
T 1dn1_B           25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASP--NPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ  102 (267)
T ss_dssp             --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS--SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            56778999999999999999999999999999998765443  3334789999999999999999999999999887542


Q ss_pred             hhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCChhHHHHHhhCCCCchHH
Q 021349          119 NKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEF  198 (313)
Q Consensus       119 ~~~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~~~~s~eeie~~ie~g~~~~~~  198 (313)
                         .+++++++++.|+|++++..|+++|+++|++|+.+|..|+..++.++.|+| .+.||++++++++.++++|+ + .+
T Consensus       103 ---~~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~-~i~~~~~tdeeie~~ie~g~-~-~~  176 (267)
T 1dn1_B          103 ---EEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGN-P-AI  176 (267)
T ss_dssp             ---HHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHTCS-S-CT
T ss_pred             ---ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hccCCCCCHHHHHHHHhCCc-H-HH
Confidence               122344467789999999999999999999999999999999999998875 45789999999999999886 3 35


Q ss_pred             hHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021349          199 LTHAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGTKELKTAK  278 (313)
Q Consensus       199 ~q~~l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~  278 (313)
                      |++++... .++++.++.++++||++|.+||++|.+||+||.|||.||++||++||+||+||+.|..||++|..+|.+|.
T Consensus       177 f~q~~l~~-~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~  255 (267)
T 1dn1_B          177 FASGIIMD-SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV  255 (267)
T ss_dssp             TTTTCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------
T ss_pred             HHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55443221 23567789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcchhhHHH
Q 021349          279 DYQRSNRKWMCV  290 (313)
Q Consensus       279 ~~qk~~rk~~c~  290 (313)
                      +||+++|||+||
T Consensus       256 ~~q~~~rkk~~~  267 (267)
T 1dn1_B          256 KYQSKARRKKIM  267 (267)
T ss_dssp             ------------
T ss_pred             HHHHHhcCcccC
Confidence            999999999986
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 313
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 2e-27
d1ez3a_124 a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat ( 1e-19
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (259), Expect = 2e-27
 Identities = 40/207 (19%), Positives = 88/207 (42%), Gaps = 14/207 (6%)

Query: 43  NLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRA 102
           +   F+ +   + +++++    + ++   +++  +    E    LRH ++  V       
Sbjct: 3   DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQ 62

Query: 103 RNIKSHLEDMDRANAANKRLSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMT 162
             +K+ ++   R    +               + A     R++  +L+ +++ +      
Sbjct: 63  FKLKNEIKSAQRDGIHD-------------TNKQAQAENSRQRFLKLIQDYRIVDSNYKE 109

Query: 163 EYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTHAIQEHGRGKVLETVVEIQDRH 222
           E KE   R+Y  +  E   ++ +E  ISD  G + F    +  + RG+    + E+Q RH
Sbjct: 110 ENKEQAKRQYMIIQPEATEDE-VEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARH 168

Query: 223 DTAKEIEKSLLELHQIFLDMAVMVEAQ 249
               ++EKS+ EL Q+F DM  +V  Q
Sbjct: 169 QELLKLEKSMAELTQLFNDMEELVIEQ 195
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.92
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.76
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 93.05
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 88.56
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.2e-24  Score=186.58  Aligned_cols=194  Identities=21%  Similarity=0.356  Sum_probs=161.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021349           42 QNLNLFLAEAENVKKEMEEIRDVLGRLQEANEQSKSLHKPEALKLLRHKINKDVVTVLKRARNIKSHLEDMDRANAANKR  121 (313)
Q Consensus        42 ~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ei~~~~~~ik~~Lk~l~~~~~~~~~  121 (313)
                      ..+..||+.|++|+..|..|+..+..|..++.+.+..+++.+...++.+++.++.+++.+++.|+..++.+...      
T Consensus         2 ~d~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~------   75 (196)
T d1fioa_           2 HDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD------   75 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------
Confidence            35889999999999999999999999999999887777888888899999999999999999999998877652      


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCChhHHHHHhhCCCCchHHhHH
Q 021349          122 LSGCKEGTPIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMTEYKETVGRRYFTVTGEYPNEDVIEKIISDNNGSEEFLTH  201 (313)
Q Consensus       122 ~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~yk~~i~Rr~~~v~~~~~s~eeie~~ie~g~~~~~~~q~  201 (313)
                             .++.+++++++..|+.+|.+++..|+.+|..|...++.++.|++. +.+|++++++++..+..++ ....+..
T Consensus        76 -------~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~  146 (196)
T d1fioa_          76 -------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYM-IIQPEATEDEVEAAISDVG-GQQIFSQ  146 (196)
T ss_dssp             -------TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTTCCHHHHHHHTSHHH-HHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCccchhhhHhhcccc-chHHHHH
Confidence                   234589999999999999999999999999999999999888754 4578899999888776543 2333333


Q ss_pred             H-HHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021349          202 A-IQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQIFLDMAVMVEAQG  250 (313)
Q Consensus       202 ~-l~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~~l~~lV~~Qg  250 (313)
                      . +......++...+.++++|+++|.+||++|.|||+||.|||.||++|.
T Consensus       147 ~~~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         147 ALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             HTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            2 223333456778899999999999999999999999999999999883
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure