Citrus Sinensis ID: 021361

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI
Secondary Structure (PSIPRED)
ccccEEEEEccccHHHHHHHHcccEEEEcccccccHHHHHHccccccEEEccccccccHHHHHHccccEEEEEEccccccccHHHHHHcccEEccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHccEEEEEccccccccccccHHHHHHccccEEEEEEcccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccHHHHHHHHHcccEEEEccccccHHHHHHHHHcccEEEEEccccccHHHHHHccccEEEEEcccccccccHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccEEEEEcccHHHHHHHHHHHHcccEEEEEcHHHHHHcccEEcccHHHHHccccEEEEcccccccccccEcHHHHccccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccHHHcccccEEEcccccccEHHHHHHHHHHHHHHHHHHHccccccccEc
Coil and Loop (DISEMBL)
MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAvvgdtkcgadaelidslptlEIVASYsvgldkidldkckdkavrvtntpdvltdDVADLAVGLVLAVLRRVCEFdefvksgkwknghfelgskfsgksvgivGLGRIGTAIAKRVEafgcpisyhsrseksdanyKYYTNIIDLASNCQILIVACSLTEETHHIVNRKvidalgpsgilinigrgahidepELVSALLEGRlagagldvyenepevpeqmlglnnvvllphvgsdteETSKAMADLVIENLVAhfsnkplltpvi
Flexible Loop (DISEMBL)
MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSvgldkidldkckdKAVRVtntpdvltddvaDLAVGLVLAVLRRVCEFDEfvksgkwknghfelgskfsgksvGIVGLGRIGTAIAKRVEAFGCPIsyhsrseksdaNYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLvahfsnkplltpvi
Low Complexity Region (SEG)
MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGldkidldkckdkAVRVTNTPdvltddvadlavglvlavlRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSallegrlagaglDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI
Disordered region (IsUnstruct)
*****VLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVG********AMADLVIENLVAHFS*********
Disordered Region (DISOPRED)
*EKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI
Disordered Region (DISEMBL)
MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI
Disordered Region (DISPRO)
*EKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q9CA90	313	Glyoxylate/hydroxypyruvat	yes	no	1.0	1.0	0.667	1e-118
Q9LE33	323	Glyoxylate/hydroxypyruvat	no	no	0.980	0.950	0.485	5e-81
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.779	0.726	0.442	3e-56
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.789	0.739	0.439	7e-56
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.904	0.854	0.411	8e-53
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.789	0.741	0.443	2e-52
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.779	0.719	0.408	5e-50
C5A1V0	334	Glyoxylate reductase OS=T	yes	no	0.789	0.739	0.420	3e-48
B2VCD1	321	Glyoxylate/hydroxypyruvat	yes	no	0.795	0.775	0.414	4e-48
C6DJ88	320	Glyoxylate/hydroxypyruvat	yes	no	0.952	0.931	0.364	4e-47

>sp|Q9CA90|HPR2_ARATH Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana GN=HPR2 PE=1 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/313 (66%), Positives = 250/313 (79%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           ME IGVLM  PMS+YLE EL  RF L + WT   K+   + + ++IRAVVG+   GADA+
Sbjct: 1   MESIGVLMMCPMSSYLENELEKRFNLLRFWTSPEKSVLLETHRNSIRAVVGNASAGADAQ 60

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           LI  LP LEIV+S+SVGLDKIDL KCK+K +RVTNTPDVLT+DVADLA+GL+LA+LRR+C
Sbjct: 61  LISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLC 120

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
           E D +V+SGKWK G F+L +KFSGKSVGI+GLGRIGTAIAKR EAF CPI+Y+SR+ K D
Sbjct: 121 ECDRYVRSGKWKQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPD 180

Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
             YKYY  ++DLA N  IL+VAC LTE+T HIV+R+V+DALG  G+LINIGRG H+DE E
Sbjct: 181 VAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQE 240

Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
           L+ AL EGRL GA LDV+E EP VPE++ GL NVVLLPHVGS T ET  AMADLV+ NL 
Sbjct: 241 LIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLE 300

Query: 301 AHFSNKPLLTPVI 313
           AHFS K LLTPV+
Sbjct: 301 AHFSGKSLLTPVV 313

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1

 Score =  301 bits (770), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 151/311 (48%), Positives = 215/311 (69%), Gaps = 4/311 (1%)

Query: 6   VLMTTPMS-NYLEQELAARFTLFKLWTQSCKN--KFFQENSSAIRAVVGDTKCGADAELI 62
           VL+  P S  ++++ L   F      T S ++   FF  ++S+ RA V   +     EL+
Sbjct: 10  VLLHRPPSLTFMDEILTREFRTLITDTSSSESLPSFFPRHASSARAFVISGRLPVTDELL 69

Query: 63  DSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEF 122
             LP+L+I+   SVG+D IDL  CK + + +TN  +  +DDVAD AVGL+++VLRR+   
Sbjct: 70  SHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRRIPAA 129

Query: 123 DEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA 181
           D +V+SG W K G F+LGSK SGK VGIVGLG IG+ +AKR+E+FGC ISY+SRS+K  +
Sbjct: 130 DRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQKQSS 189

Query: 182 NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPEL 241
            Y+YY++I+ LA N  +L++ CSLT+ETHHIVNR+V++ LG  G++IN+GRG  IDE E+
Sbjct: 190 PYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLIDEKEM 249

Query: 242 VSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
           V  L++G + GAGLDV+ENEP VP+++ GL+NVVL PH    T  +   +A + + NL A
Sbjct: 250 VKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALANLKA 309

Query: 302 HFSNKPLLTPV 312
            FSN+PLL+PV
Sbjct: 310 FFSNRPLLSPV 320

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  219 bits (557), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/253 (44%), Positives = 163/253 (64%), Gaps = 9/253 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           D E+ ++ P L IVA+Y+VG D ID+++   + + VTNTPDVLT+  AD A  L+LA  R
Sbjct: 58  DQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATAR 117

Query: 118 RVCEFDEFVKSGKWK------NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
            V + D+FV+SG+WK      +  + LG +  GK++GIVG GRIG AIA+R + F   I 
Sbjct: 118 HVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIARRAKGFNMRIL 177

Query: 172 YHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
           Y+SR+ KS A  +    Y  + ++      +I+A  LT+ET +++N + +  + P+ IL+
Sbjct: 178 YYSRTRKSQAEKELGAEYRPLEEVLKESDFVILAVPLTKETMYMINEERLKLMKPTAILV 237

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
           NI RG  +D   L+ AL EG +AGAGLDV+E EP   E++  L+NVVL PH+GS T E  
Sbjct: 238 NIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPYYNEELFSLDNVVLTPHIGSATFEAR 297

Query: 289 KAMADLVIENLVA 301
           +AMA+LV  NL+A
Sbjct: 298 EAMAELVARNLIA 310

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  217 bits (553), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 113/257 (43%), Positives = 163/257 (63%), Gaps = 10/257 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DAE+ D+ P L+IVA+Y+VG D ID+++     V +TNTPDVLT+  AD+A  L+LA  R
Sbjct: 58  DAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATAR 117

Query: 118 RVCEFDEFVKSGKWKNGHFE------LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
           R+ E D+FV+SG+WK           LG    G+++GIVG GRIG AIA+R + FG  I 
Sbjct: 118 RLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRIL 177

Query: 172 YHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
           Y+SR+ K +   +    +  + +L      +++   LT+ET+H++N + +  + P+ IL+
Sbjct: 178 YNSRTRKPEVEKELGAEFMPLDELLKESDFVVLVVPLTKETYHMINEERLKLMKPTAILV 237

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
           NI RG  +D   LV AL EG +AGAGLDV+E EP   E++  L+NVVL PH+GS T    
Sbjct: 238 NIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELFSLDNVVLAPHIGSATYGAR 297

Query: 289 KAMADLVIENLVAHFSN 305
           + MA+LV  NL+A F N
Sbjct: 298 EGMAELVARNLIA-FKN 313

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  207 bits (527), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 121/294 (41%), Positives = 173/294 (58%), Gaps = 11/294 (3%)

Query: 19  ELAARFTLFKLWT--QSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSV 76
           ++  +F   +LW   ++       E    + A+V       D EL+++ P L+I+A Y+V
Sbjct: 17  KMIEKFYEIELWKDPKAPPRGVLLEKVREVDALVTLVTDKVDKELLENAPKLKIIAQYAV 76

Query: 77  GLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH- 135
           G D ID+++   + + VTNTP VLTD  ADLA  L+LAV RR+ E D FV+SG+WK    
Sbjct: 77  GYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEV 136

Query: 136 -----FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKY---YT 187
                  LG    GK++GIVG GRIG A+AKR + FG  I Y+SR+ K +A  +    Y 
Sbjct: 137 GWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKIIYYSRTRKPEAEEEIGAEYV 196

Query: 188 NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247
           +   L      + +   LT+ET+H++  K +  + P+ ILIN  RGA +D   L+ AL E
Sbjct: 197 DFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALIKALKE 256

Query: 248 GRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
           G +AGAGLDV+E EP   E++  L NVVL PH+GS T E  + MA+LV +NL+A
Sbjct: 257 GWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIGSATHEAREGMAELVAKNLIA 310

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/257 (44%), Positives = 161/257 (62%), Gaps = 10/257 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           D+E+ D+ P L IVA+Y+VG D ID+++   + + VTNTPDVLTD  AD A  L+LA  R
Sbjct: 58  DSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATAR 117

Query: 118 RVCEFDEFVKSGKWK------NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
           R+ E D F +SG+WK      +  + LG    GK++GIVG GRIG A+A+R   FG  I 
Sbjct: 118 RLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARRARGFGMRIL 177

Query: 172 YHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
           Y+SRS K +A  +    + ++ DL      +++A  LT+ET +++N + +  +  + IL+
Sbjct: 178 YYSRSRKPEAEKELGAEFRSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAILV 237

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
           NI RG  +D   L+ AL EG +AGAGLDVYE EP   E++  L NVVL PH+GS T    
Sbjct: 238 NIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVLAPHIGSATYGAR 297

Query: 289 KAMADLVIENLVAHFSN 305
           + MA+LV  NL+A F N
Sbjct: 298 EGMAELVARNLIA-FKN 313

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  198 bits (503), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 103/252 (40%), Positives = 154/252 (61%), Gaps = 8/252 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DAE++D+ P L+++++YSVG D ID+ +   + + VT+TP VLTD VA+  VGL+LAV R
Sbjct: 60  DAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTR 119

Query: 118 RVCEFDEFVKSGKWK---NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS 174
           R+ E D+ +++G+W    N +F  G +  GK++G+VGLGRIG A AKR+ +F   I Y+ 
Sbjct: 120 RIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRLSSFDVKILYYD 179

Query: 175 RSEKSDANY----KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
              + D         +T++  L     I+ +   LT+ET+H++N + +  +  +  LIN 
Sbjct: 180 IERRWDVETVIPNMEFTDLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINT 239

Query: 231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSK 289
            RG  +D   LV AL EG +AGA LDV+E EP  P   L   +NVVL PH+ S T E  +
Sbjct: 240 ARGPVVDTEALVKALKEGWIAGAALDVFEQEPLPPNHPLTKFDNVVLAPHIASATIEARQ 299

Query: 290 AMADLVIENLVA 301
            MA+L   NL+A
Sbjct: 300 RMAELAARNLIA 311

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 159/257 (61%), Gaps = 10/257 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           D E+ D+ P L IVA+Y+VG D +D+++   + + VTNTPDVLT+  AD A  L+LA  R
Sbjct: 58  DGEVFDNAPRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATAR 117

Query: 118 RVCEFDEFVKSGKWKNGHFE------LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
           R+ E D F +SG+WK           LG    GK++GI+G GRIG A+A+R + FG  I 
Sbjct: 118 RLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL 177

Query: 172 YHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
           Y+SR+ K +A  +    +  + +L      +++A  LT+ET+H++  + +  + P+ IL+
Sbjct: 178 YYSRTRKPEAEEELKAEFKPLEELLKESDFVVLAVPLTKETYHMIGERELKLMKPTAILV 237

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
           NI RG  +D   L+ AL EG +AGAGLDV+E EP   E++  L NV+L PH+GS T    
Sbjct: 238 NIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVILAPHIGSATFGAR 297

Query: 289 KAMADLVIENLVAHFSN 305
           + MA+LV  NL+A F N
Sbjct: 298 EGMAELVARNLIA-FKN 313

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B2VCD1|GHRB_ERWT9 Glyoxylate/hydroxypyruvate reductase B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ghrB PE=3 SV=1

 Score =  192 bits (487), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 106/256 (41%), Positives = 151/256 (58%), Gaps = 7/256 (2%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DAE +   P L + +S SVG D  D+    D+ V + +TP VLT+ VAD  + LVL+  R
Sbjct: 57  DAEFLRQAPKLRVASSISVGYDNFDVAALNDRGVLLMHTPTVLTETVADTMMALVLSSAR 116

Query: 118 RVCEFDEFVKSGKWKNGHFE--LGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHS 174
           RV E  E VKSG+W+        G     K +GI+G+GRIG A+A+R    FG PI Y++
Sbjct: 117 RVVEMAERVKSGEWRGSISSDWFGIDVHHKKLGILGMGRIGLALAQRAHLGFGMPILYNA 176

Query: 175 RSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
           R    +A  ++   Y ++  L +    L ++  LTE+THH++ R+ +  +  S ILIN G
Sbjct: 177 RKHHDEAEQRFDAEYCDLDTLLAESDFLCISLPLTEQTHHLIGREQLAKMKRSAILINAG 236

Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSKA 290
           RG  +DE  L++AL +G L  AGLDV+E EP  V  ++L L NVV LPH+GS T ET   
Sbjct: 237 RGPVVDEQALIAALKDGTLHAAGLDVFEQEPLPVSSELLALRNVVALPHIGSATHETRYG 296

Query: 291 MADLVIENLVAHFSNK 306
           MA   ++NL+A  + K
Sbjct: 297 MAKDAVDNLIAALNGK 312

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Erwinia tasmaniensis (strain DSM 17950 / Et1/99) (taxid: 338565)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|C6DJ88|GHRB_PECCP Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1

 Score =  188 bits (478), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 173/313 (55%), Gaps = 15/313 (4%)

Query: 3   KIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAE 60
           K  V++   +++ L   L   FT+ +L      + F   +  A+    G    G   D +
Sbjct: 2   KPSVILYKKIADDLRARLDQHFTVTEL------DAFPSLDHPALATAEGIIGSGGKVDKD 55

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
            +   P L   ++ SVG D  ++D   +K V + +TP VLT+ VAD  + L+LA  RRV 
Sbjct: 56  FLQHAPRLRAASTISVGYDTFNVDALNEKGVILMHTPTVLTETVADTVLALMLASARRVV 115

Query: 121 EFDEFVKSGKWKNG--HFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSE 177
           E  E VK+G+WK G      G+    K++GI+G+GRIG A+A+R    F  P+ Y++R  
Sbjct: 116 EVAERVKAGEWKGGVDSDWFGTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRH 175

Query: 178 KSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234
            ++A  ++   + ++  L +    L +   LT ETHH++ R+ +  + PS ILINIGRGA
Sbjct: 176 HAEAEQRFNARHCDLDTLLAESDFLCITLPLTTETHHLIGREQLAKMKPSAILINIGRGA 235

Query: 235 HIDEPELVSALLEGRLAGAGLDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSKAMAD 293
            +DE  L  AL++G + GAGLDV+  EP  V   +L L NVV LPH+GS T ET   MA 
Sbjct: 236 VVDEDALTEALVKGTIQGAGLDVFVKEPLPVDSPLLDLPNVVALPHIGSATHETRYDMAA 295

Query: 294 LVIENLVAHFSNK 306
             ++NL+A  S +
Sbjct: 296 CAVDNLIAALSGE 308

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
255549958	313	glycerate dehydrogenase, putative [Ricin	1.0	1.0	0.715	1e-132
449519625	346	PREDICTED: LOW QUALITY PROTEIN: glyoxyla	1.0	0.904	0.699	1e-130
224059094	315	predicted protein [Populus trichocarpa]	1.0	0.993	0.739	1e-130
449448024	346	PREDICTED: glyoxylate/hydroxypyruvate re	1.0	0.904	0.699	1e-130
225442601	313	PREDICTED: glyoxylate reductase [Vitis v	1.0	1.0	0.728	1e-130
212374928	333	Chain A, Structure Of Hydroxyphenylpyruv	1.0	0.939	0.696	1e-127
62816284	313	hydroxyphenylpyruvate reductase (HPPR) [	1.0	1.0	0.696	1e-127
448278786	313	hydroxyphenylpyruvate reductase [Salvia	1.0	1.0	0.693	1e-127
72256935	313	putative hydroxyphenylpyruvate reductase	1.0	1.0	0.683	1e-127
255549956	314	glycerate dehydrogenase, putative [Ricin	1.0	0.996	0.687	1e-126

>gi|255549958|ref|XP_002516030.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223544935|gb|EEF46450.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/313 (71%), Positives = 264/313 (84%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           MEKIGVLMT P+  YLE++L + F L KLW Q  K +F + + + I+A+V DTK GAD E
Sbjct: 1   MEKIGVLMTCPIYTYLEKQLESHFNLLKLWQQPSKTEFLKTHENNIKAIVCDTKIGADGE 60

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           LID+LP LEIVA+YSVGLDKIDL KC +K +RVTNTPDVLTDDVADLA+GL+L VLR++C
Sbjct: 61  LIDALPNLEIVATYSVGLDKIDLKKCAEKGIRVTNTPDVLTDDVADLAIGLMLGVLRKIC 120

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
             D +V++GKW++G FEL +KFSGKS+GIVGLGRIGTAIAKR EAF C ISY+SR++K  
Sbjct: 121 ASDGYVRNGKWRDGDFELTTKFSGKSIGIVGLGRIGTAIAKRAEAFNCSISYYSRTQKPY 180

Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
            NYKY++NI+DLA  CQIL+VAC+LTEET HI+NR+VIDALGP GILINIGRGAH+DEPE
Sbjct: 181 TNYKYFSNILDLAKTCQILVVACALTEETRHIINREVIDALGPKGILINIGRGAHVDEPE 240

Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
           LVSALLEGRLAGAG DVYENEP VPEQ+  L+NV L PH+GSDT ETS AMADLVI NL 
Sbjct: 241 LVSALLEGRLAGAGFDVYENEPMVPEQLFSLDNVFLQPHIGSDTVETSNAMADLVIANLE 300

Query: 301 AHFSNKPLLTPVI 313
           AH +NKPLLTPVI
Sbjct: 301 AHLTNKPLLTPVI 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519625|ref|XP_004166835.1| PREDICTED: LOW QUALITY PROTEIN: glyoxylate/hydroxypyruvate reductase A HPR2-like [Cucumis sativus]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/313 (69%), Positives = 266/313 (84%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           ME IGVLMT PM+ YLE EL  RF L+K W    K +F  E+ ++IRAVVG+   GADA 
Sbjct: 34  MESIGVLMTCPMNAYLEGELQKRFNLYKFWQFPQKTQFLTEHCNSIRAVVGNASAGADAT 93

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           LID+LP LEIV+S+SVGLDKIDL KCK+K +RVTNTPDVLT+DVADLA+GL++AVLRR+C
Sbjct: 94  LIDALPKLEIVSSFSVGLDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLC 153

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
           E D +V+SGKWK G+++L +KFSGKSVGI+GLGRIG AIAKR EAF CPISY+SR++K D
Sbjct: 154 ECDRYVRSGKWKIGNYKLTTKFSGKSVGIIGLGRIGLAIAKRAEAFNCPISYYSRTKKED 213

Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
             YKYY+N+++LASN  ILIVAC+LT+ETHHIVNR+VIDALGP G+LINIGRG H+DEPE
Sbjct: 214 TKYKYYSNLLELASNSDILIVACALTKETHHIVNREVIDALGPKGVLINIGRGPHVDEPE 273

Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
           LV+AL+EGRL GAGLDV+ENEPEVP+++  L NVVL+PH+GS T ET K MADLV+ NL 
Sbjct: 274 LVAALVEGRLGGAGLDVFENEPEVPQELFALENVVLVPHIGSGTVETRKEMADLVLXNLE 333

Query: 301 AHFSNKPLLTPVI 313
           +HFSNKPLLTPV+
Sbjct: 334 SHFSNKPLLTPVV 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059094|ref|XP_002299712.1| predicted protein [Populus trichocarpa] gi|222846970|gb|EEE84517.1| predicted protein [Populus trichocarpa]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/315 (73%), Positives = 263/315 (83%), Gaps = 2/315 (0%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLW-TQSCKNKFFQ-ENSSAIRAVVGDTKCGAD 58
           M+ IGVLMT PM  YLEQ+L   F LFKLW   S   +F +    + IRAVVG+T+ GAD
Sbjct: 1   MKSIGVLMTCPMHKYLEQQLETHFNLFKLWHCNSSITEFLKTHQGNTIRAVVGNTEIGAD 60

Query: 59  AELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRR 118
           AELI SLP+LEIVASYSVGLDKIDL KC++K +RV NTPDVLTDDVADLA+GL+L VLR 
Sbjct: 61  AELIASLPSLEIVASYSVGLDKIDLRKCEEKGIRVANTPDVLTDDVADLAIGLILGVLRG 120

Query: 119 VCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178
           +C  D +V+ GKWK+  F L +KFSGKSVGIVGLGRIGTAIAKR EAFGC ISY SRS+K
Sbjct: 121 ICASDAYVRIGKWKDADFGLATKFSGKSVGIVGLGRIGTAIAKRAEAFGCSISYFSRSQK 180

Query: 179 SDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE 238
             ANYK+Y+NIIDLA++CQILIVAC+LTEET HI+NR+VIDALGP GILINIGRGAH+DE
Sbjct: 181 PFANYKFYSNIIDLATSCQILIVACALTEETRHIINREVIDALGPKGILINIGRGAHVDE 240

Query: 239 PELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIEN 298
            ELVSALLEGRL GAGLDVYENEP+VPE++LGL NVVL PHVGSDT ETS AMADLVI N
Sbjct: 241 TELVSALLEGRLGGAGLDVYENEPDVPEELLGLGNVVLQPHVGSDTVETSDAMADLVISN 300

Query: 299 LVAHFSNKPLLTPVI 313
           L AHFS K LLTPVI
Sbjct: 301 LKAHFSKKSLLTPVI 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448024|ref|XP_004141766.1| PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2-like [Cucumis sativus]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/313 (69%), Positives = 266/313 (84%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           ME IGVLMT PM+ YLE EL  RF L+K W    K +F  E+ ++IRAVVG+   GADA 
Sbjct: 34  MESIGVLMTCPMNAYLEGELQKRFNLYKFWQFPQKTQFLTEHCNSIRAVVGNASAGADAT 93

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           LID+LP LEIV+S+SVGLDKIDL KCK+K +RVTNTPDVLT+DVADLA+GL++AVLRR+C
Sbjct: 94  LIDALPKLEIVSSFSVGLDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLC 153

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
           E D +V+SGKWK G+++L +KFSGKSVGI+GLGRIG AIAKR EAF CPISY+SR++K D
Sbjct: 154 ECDRYVRSGKWKIGNYKLTTKFSGKSVGIIGLGRIGLAIAKRAEAFNCPISYYSRTKKED 213

Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
             YKYY+N+++LASN  ILIVAC+LT+ETHHIVNR+VIDALGP G+LINIGRG H+DEPE
Sbjct: 214 TKYKYYSNLLELASNSDILIVACALTKETHHIVNREVIDALGPKGVLINIGRGPHVDEPE 273

Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
           LV+AL+EGRL GAGLDV+ENEPEVP+++  L NVVL+PH+GS T ET K MADLV+ NL 
Sbjct: 274 LVAALVEGRLGGAGLDVFENEPEVPQELFALENVVLVPHIGSGTVETRKEMADLVLGNLE 333

Query: 301 AHFSNKPLLTPVI 313
           +HFSNKPLLTPV+
Sbjct: 334 SHFSNKPLLTPVV 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442601|ref|XP_002284520.1| PREDICTED: glyoxylate reductase [Vitis vinifera] gi|297743257|emb|CBI36124.3| unnamed protein product [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/313 (72%), Positives = 264/313 (84%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           ME I VL+T P+  YL Q+L  RFT+FK    +   +  +E S++IRA+VG + CGADA 
Sbjct: 1   MENICVLLTYPVPEYLVQKLEKRFTVFKFREVASNPQLLREISNSIRAIVGTSVCGADAG 60

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           LID+LP LEIVASYSVG DKIDL KCK++ + VTNTPDVLTDDVAD A+GL LA LRR+C
Sbjct: 61  LIDALPKLEIVASYSVGFDKIDLVKCKERGITVTNTPDVLTDDVADSAIGLALATLRRMC 120

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
             D FV+SGKWK G FEL +KFSGKS+GIVGLGRIG+AIAKR EAFG  ISYHSRSEK +
Sbjct: 121 VCDRFVRSGKWKKGDFELTTKFSGKSIGIVGLGRIGSAIAKRAEAFGSSISYHSRSEKPE 180

Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
           +NYKYY+NIIDLA+NCQIL VAC+LT+ETHHIV+RKVIDALGP GI+INIGRGAHIDEPE
Sbjct: 181 SNYKYYSNIIDLATNCQILFVACALTKETHHIVDRKVIDALGPKGIIINIGRGAHIDEPE 240

Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
           LVSALLEGRLAGAGLDV+E+EPEVPE++LGL NVVL PH GSDT ETS AM+DLVI+NL 
Sbjct: 241 LVSALLEGRLAGAGLDVFEHEPEVPEELLGLENVVLQPHAGSDTVETSVAMSDLVIDNLE 300

Query: 301 AHFSNKPLLTPVI 313
           A F NKP+LTPVI
Sbjct: 301 ACFQNKPVLTPVI 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212374928|pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu gi|212374938|pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blumei In Complex With Nadp+

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/313 (69%), Positives = 258/313 (82%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           ME IGVLM  PMS YLEQEL  RF LF+ WTQ  +  F    + +IRAVVG++  GADAE
Sbjct: 21  MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 80

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           LID+LP LEIV+S+SVGLDK+DL KC++K VRVTNTPDVLTDDVADLA+GL+LAVLRR+C
Sbjct: 81  LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
           E D++V+ G WK G F+L +KFSGK VGI+GLGRIG A+A+R EAF CPISY SRS+K +
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200

Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
            NY YY ++++LASN  IL+VAC LT ET HI+NR+VIDALGP G+LINIGRG H+DEPE
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260

Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
           LVSAL+EGRL GAGLDV+E EPEVPE++ GL NVVLLPHVGS T ET K MADLV+ NL 
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 320

Query: 301 AHFSNKPLLTPVI 313
           AHFS KPLLTPV+
Sbjct: 321 AHFSGKPLLTPVV 333

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62816284|emb|CAD47810.2| hydroxyphenylpyruvate reductase (HPPR) [Solenostemon scutellarioides]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/313 (69%), Positives = 258/313 (82%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           ME IGVLM  PMS YLEQEL  RF LF+ WTQ  +  F    + +IRAVVG++  GADAE
Sbjct: 1   MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 60

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           LID+LP LEIV+S+SVGLDK+DL KC++K VRVTNTPDVLTDDVADLA+GL+LAVLRR+C
Sbjct: 61  LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 120

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
           E D++V+ G WK G F+L +KFSGK VGI+GLGRIG A+A+R EAF CPISY SRS+K +
Sbjct: 121 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 180

Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
            NY YY ++++LASN  IL+VAC LT ET HI+NR+VIDALGP G+LINIGRG H+DEPE
Sbjct: 181 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 240

Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
           LVSAL+EGRL GAGLDV+E EPEVPE++ GL NVVLLPHVGS T ET K MADLV+ NL 
Sbjct: 241 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 300

Query: 301 AHFSNKPLLTPVI 313
           AHFS KPLLTPV+
Sbjct: 301 AHFSGKPLLTPVV 313

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|448278786|gb|AGE44245.1| hydroxyphenylpyruvate reductase [Salvia officinalis]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/313 (69%), Positives = 263/313 (84%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           ME IGVLM  PM++YLEQEL  RF L + WTQ  +++F  + + +IRAVVG+   GADA 
Sbjct: 1   MEAIGVLMMCPMNSYLEQELDKRFKLLRYWTQPKQSEFLAQQADSIRAVVGNASAGADAA 60

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           LID+LP LEIV+++SVGLDK+DL KCK+K VRVTNTPDVLTDDVADLA+GL+LAVLRR+C
Sbjct: 61  LIDALPKLEIVSNFSVGLDKVDLVKCKEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 120

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
           E D++V+ G WK G F+L +KFSGK VGI+GLGRIG A+A+R EAF CPI+Y+SRS+K++
Sbjct: 121 ECDKYVRRGAWKLGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPINYYSRSKKAN 180

Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
            NY YY +I++LASN  IL+VAC+LT ET HIVNR+VIDALGP G+LINIGRG H+DE E
Sbjct: 181 TNYTYYGSIVELASNSDILVVACALTPETTHIVNREVIDALGPKGVLINIGRGPHVDEAE 240

Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
           LVSAL+EGRL GAGLDV+E EPEVPEQ+ GL NVVLLPHVGS T ET KAMADLV+ NL 
Sbjct: 241 LVSALVEGRLGGAGLDVFEKEPEVPEQLFGLENVVLLPHVGSGTVETRKAMADLVLGNLE 300

Query: 301 AHFSNKPLLTPVI 313
           AHFS+KPLLTPV+
Sbjct: 301 AHFSSKPLLTPVV 313

Source: Salvia officinalis

Species: Salvia officinalis

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|72256935|gb|AAZ67354.1| putative hydroxyphenylpyruvate reductase [Salvia miltiorrhiza]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/313 (68%), Positives = 265/313 (84%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           ME IGVLM  PM++YLEQEL  RF LF+ WTQ  + +F  + + +IRA+VG++  GADA+
Sbjct: 1   MEAIGVLMLCPMNSYLEQELDKRFKLFRYWTQPKQREFLAQQAESIRAIVGNSNSGADAD 60

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           +IDSLP LEIV+S+SVGLD+IDL KCK+K +RVTNTPDVLT+DVADLA+GL+LAVLRR+C
Sbjct: 61  IIDSLPKLEIVSSFSVGLDRIDLLKCKEKGIRVTNTPDVLTEDVADLAIGLMLAVLRRIC 120

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
           E D++V+SG WK G F+L +KFSGK VGI+GLGRIG A+A+R EAF CPI+Y+SRS+K++
Sbjct: 121 ECDKYVRSGAWKLGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPINYYSRSKKAN 180

Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
            NY YY ++++LASN  IL+VAC+LT ET HIVNR+V+DALGP G+LINIGRG H+DE E
Sbjct: 181 TNYTYYGSVVELASNSDILVVACALTPETTHIVNREVMDALGPKGVLINIGRGPHVDEAE 240

Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
           LVSAL+EGRL GAGLDV+E EPEVPEQ+ GL NVVLLPHVGS T ET K MADLV+ NL 
Sbjct: 241 LVSALVEGRLGGAGLDVFEKEPEVPEQLFGLENVVLLPHVGSGTVETRKVMADLVLGNLE 300

Query: 301 AHFSNKPLLTPVI 313
           AHFS+KPLLTPV+
Sbjct: 301 AHFSSKPLLTPVV 313

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549956|ref|XP_002516029.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223544934|gb|EEF46449.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/314 (68%), Positives = 267/314 (85%), Gaps = 1/314 (0%)

Query: 1   MEKIGVLMT-TPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADA 59
           ME IGVLMT  PM+ YL +EL  RFTL+ L+    K +F   +S++IRAVVG++  G DA
Sbjct: 1   MESIGVLMTCPPMNPYLVEELEKRFTLYNLYNIPDKTQFLNSHSNSIRAVVGNSGYGIDA 60

Query: 60  ELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRV 119
           +LID LP LEIV+S+SVGLDK+DL KCK+K +RVTNTPDVLTDDVADLA+GL+LAV+RR+
Sbjct: 61  DLIDQLPNLEIVSSHSVGLDKVDLAKCKEKRIRVTNTPDVLTDDVADLAIGLMLAVMRRL 120

Query: 120 CEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS 179
           CE D++++SGKWK G ++L +KF+GKSVGI+GLGRIG AIAKR EAF CPISY++R+EK+
Sbjct: 121 CESDQYLRSGKWKKGDYKLTTKFTGKSVGIIGLGRIGMAIAKRAEAFSCPISYYARTEKT 180

Query: 180 DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEP 239
             NYKYY +++++A +CQIL+V+C+LTEET HIVNR+VIDALGP GILINIGRG+H+DEP
Sbjct: 181 VVNYKYYQSVVEMAGDCQILVVSCALTEETRHIVNREVIDALGPKGILINIGRGSHVDEP 240

Query: 240 ELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENL 299
           ELVSALLEGRL GAGLDV+E+EP VPEQ+ GL NVVLLPHVG+ T ET  AMA LV+ NL
Sbjct: 241 ELVSALLEGRLGGAGLDVFEDEPNVPEQLFGLENVVLLPHVGTRTFETRIAMAYLVVGNL 300

Query: 300 VAHFSNKPLLTPVI 313
            AHFSNKPLLTPV+
Sbjct: 301 EAHFSNKPLLTPVV 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2017824	313	AT1G79870 [Arabidopsis thalian	1.0	1.0	0.559	8.3e-90
TAIR|locus:2034665	323	HPR3 "hydroxypyruvate reductas	0.980	0.950	0.411	2.5e-58
TAIR|locus:2043684	338	AT2G45630 [Arabidopsis thalian	0.884	0.819	0.369	1e-45
TIGR_CMR|SPO_2422	313	SPO_2422 "D-isomer specific 2-	0.849	0.849	0.382	2.5e-42
UNIPROTKB|Q483F8	311	CPS_2082 "Putative glyoxylate	0.894	0.900	0.326	4.9e-37
TIGR_CMR|CPS_2082	311	CPS_2082 "putative glyoxylate	0.894	0.900	0.326	4.9e-37
TIGR_CMR|SPO_0913	317	SPO_0913 "D-isomer specific 2-	0.789	0.779	0.350	1e-36
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.805	0.780	0.312	2e-33
UNIPROTKB|Q48MK5	324	PSPPH_1099 "D-isomer specific	0.830	0.802	0.326	2.5e-33
UNIPROTKB|Q5TM04	328	2-KGalARE "Glyoxylate/hydroxyp	0.926	0.884	0.317	1.1e-32

TAIR|locus:2017824 AT1G79870 [Arabidopsis thaliana (taxid:3702)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 175/313 (55%), Positives = 211/313 (67%)

Query:     1 MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
             ME IGVLM  PMS+YLE EL  RF L + WT   K+   + + ++IRAVVG+   GADA+
Sbjct:     1 MESIGVLMMCPMSSYLENELEKRFNLLRFWTSPEKSVLLETHRNSIRAVVGNASAGADAQ 60

Query:    61 LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVC 120
             LI  LP LEIV+S+SVG             +RVTNTP                   RR+C
Sbjct:    61 LISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLC 120

Query:   121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
             E D +V+SGKWK G F+L +KFSGKSVGI+GLGRIGTAIAKR EAF CPI+Y+SR+ K D
Sbjct:   121 ECDRYVRSGKWKQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPD 180

Query:   181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
               YKYY  ++DLA N  IL+VAC LTE+T HIV+R+V+DALG  G+LINIGRG H+DE E
Sbjct:   181 VAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQE 240

Query:   241 LVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
             L+             DV+E EP VPE++ GL NVVLLPHVGS T ET  AMADLV+ NL 
Sbjct:   241 LIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLE 300

Query:   301 AHFSNKPLLTPVI 313
             AHFS K LLTPV+
Sbjct:   301 AHFSGKSLLTPVV 313

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009854 "oxidative photosynthetic carbon pathway" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2034665 HPR3 "hydroxypyruvate reductase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 128/311 (41%), Positives = 182/311 (58%)

Query:     6 VLMTTPMS-NYLEQELAARFTLFKLWTQSCKN--KFFQENSSAIRAVVGDTKCGADAELI 62
             VL+  P S  ++++ L   F      T S ++   FF  ++S+ RA V   +     EL+
Sbjct:    10 VLLHRPPSLTFMDEILTREFRTLITDTSSSESLPSFFPRHASSARAFVISGRLPVTDELL 69

Query:    63 DSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEF 122
               LP+L+I+   SVG             + +TN                     RR+   
Sbjct:    70 SHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRRIPAA 129

Query:   123 DEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA 181
             D +V+SG W K G F+LGSK SGK VGIVGLG IG+ +AKR+E+FGC ISY+SRS+K  +
Sbjct:   130 DRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQKQSS 189

Query:   182 NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPEL 241
              Y+YY++I+ LA N  +L++ CSLT+ETHHIVNR+V++ LG  G++IN+GRG  IDE E+
Sbjct:   190 PYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLIDEKEM 249

Query:   242 VSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
             V             DV+ENEP VP+++ GL+NVVL PH    T  +   +A + + NL A
Sbjct:   250 VKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALANLKA 309

Query:   302 HFSNKPLLTPV 312
              FSN+PLL+PV
Sbjct:   310 FFSNRPLLSPV 320

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

TAIR|locus:2043684 AT2G45630 [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 103/279 (36%), Positives = 148/279 (53%)

Query:    37 KFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNT 96
             +F   +S +I A++        A+LI  LP L +V + S G             + V N 
Sbjct:    60 EFLAYHSDSISAIIAPVAAPVTADLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANA 119

Query:    97 PXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWK-NGHFELGSKFSGKSVGIVGLGRI 155
                                 RR+   + FVK   W   G + LGSK   K +GIVGLG I
Sbjct:   120 GSSFSEDVADTAVGLLIDVFRRISAANRFVKQRFWPLKGDYPLGSKLGRKRIGIVGLGSI 179

Query:   156 GTAIAKRVEAFGCPISYHSRSEKS-DANYKYYTNIIDLASNCQILIVACSLTEETHHIVN 214
             G+ +A R++AFGC ISY SR+ K  D  Y YY +I ++A+N   LI+ C L E+T  ++N
Sbjct:   180 GSKVATRLDAFGCQISYSSRNRKPYDVPYHYYMDIEEMAANSDALIICCELNEKTLRLIN 239

Query:   215 RKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNV 274
             + V+ ALG  G+++N+ RGA IDE E+V             DV+E+EP VP+++  L+NV
Sbjct:   240 KDVLSALGKRGVIVNVARGAIIDEEEMVRCLREGEIGGAGLDVFEDEPNVPKELFELDNV 299

Query:   275 VLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI 313
             V  PH    T E  + +  +V+ N+ A FSNKPLLTPV+
Sbjct:   300 VFSPHSAFMTLEGLEELGKVVVGNIEAFFSNKPLLTPVL 338

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TIGR_CMR|SPO_2422 SPO_2422 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 103/269 (38%), Positives = 141/269 (52%)

Query:    44 SAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXX 103
             SA+ A +G T  G  AE+ D LP L ++A++ VG             + VTNTP      
Sbjct:    45 SAV-AYMGHTAFGG-AEM-DLLPGLGVIANFGVGYDAIDVAAATARGITVTNTPGVLNDD 101

Query:   104 XXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV 163
                          RR+ +   +V+ G W+  +F L  K SG   G+VGLGRIG  IA R+
Sbjct:   102 VADLAVTMLLMQCRRMEQGGAWVREGHWETANFPLNRKASGGVAGVVGLGRIGREIADRL 161

Query:   164 EAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGP 223
              AF   I Y +RSEK    + Y+ + + LA     L+VA     ET   ++R+VI+ALGP
Sbjct:   162 AAFKMDIHYFARSEKDTPGWTYHADPVSLAKAVDFLVVALVGGPETEKFISREVIEALGP 221

Query:   224 SGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSD 283
              G+++NI RG+ IDE  L+             DV+ NEP +  + L L+NVVL PH GS 
Sbjct:   222 RGVVVNISRGSTIDETALLDALERGRIAGAALDVFLNEPTIDPRFLALSNVVLQPHQGSG 281

Query:   284 TEETSKAMADLVIENLVAHFSNKPLLTPV 312
             T ET  AM  L   N+ AH + KP+LTPV
Sbjct:   282 TVETRAAMGALQRGNIAAHLAGKPVLTPV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q483F8 CPS_2082 "Putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 95/291 (32%), Positives = 141/291 (48%)

Query:    32 QSCKNKFFQENSS--AIRAVVGDTKCGA-DAELIDSLP-TLEIVASYSVGXXXXXXXXXX 87
             +S + + F+ + S  A   V+  T   A D   I  LP +++++A+  VG          
Sbjct:    21 ESIETRLFEGDFSVFAQAQVICSTSLDALDHNFITQLPESIKLIANIGVGYDNIDLAAAT 80

Query:    88 XXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWK--NGHFELGSKFSGK 145
                + VTNTP                   R++   ++F+++G+W   N    LG    G 
Sbjct:    81 AKGIAVTNTPVVTEDTADLAFSLILAAS-RQLTANEKFLRNGQWSATNPIGCLGKTVHGA 139

Query:   146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYK----YYTNIIDLASNCQILIV 201
              +GI+G G IG A+A+R +AF   I YH    K DA       Y+ N+ D+ +   I+ +
Sbjct:   140 KLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDAEVSLEAVYFENLTDMLAASDIISI 199

Query:   202 ACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENE 261
              C L E THH++N   I  + P  IL+N GRG  IDE  LV             DV+E+E
Sbjct:   200 NCPLNENTHHLINADTIATMRPDAILVNTGRGPLIDESALVGAMKKGHLFAAGLDVFEHE 259

Query:   262 PEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312
             PE+ +Q+L L NV L PH+GS T +   AMA   I N++A    + LLT V
Sbjct:   260 PEIHDQLLTLPNVTLTPHIGSATSQCRGAMAACAIGNILAQMEGRILLTSV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|CPS_2082 CPS_2082 "putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 95/291 (32%), Positives = 141/291 (48%)

Query:    32 QSCKNKFFQENSS--AIRAVVGDTKCGA-DAELIDSLP-TLEIVASYSVGXXXXXXXXXX 87
             +S + + F+ + S  A   V+  T   A D   I  LP +++++A+  VG          
Sbjct:    21 ESIETRLFEGDFSVFAQAQVICSTSLDALDHNFITQLPESIKLIANIGVGYDNIDLAAAT 80

Query:    88 XXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWK--NGHFELGSKFSGK 145
                + VTNTP                   R++   ++F+++G+W   N    LG    G 
Sbjct:    81 AKGIAVTNTPVVTEDTADLAFSLILAAS-RQLTANEKFLRNGQWSATNPIGCLGKTVHGA 139

Query:   146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYK----YYTNIIDLASNCQILIV 201
              +GI+G G IG A+A+R +AF   I YH    K DA       Y+ N+ D+ +   I+ +
Sbjct:   140 KLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDAEVSLEAVYFENLTDMLAASDIISI 199

Query:   202 ACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENE 261
              C L E THH++N   I  + P  IL+N GRG  IDE  LV             DV+E+E
Sbjct:   200 NCPLNENTHHLINADTIATMRPDAILVNTGRGPLIDESALVGAMKKGHLFAAGLDVFEHE 259

Query:   262 PEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312
             PE+ +Q+L L NV L PH+GS T +   AMA   I N++A    + LLT V
Sbjct:   260 PEIHDQLLTLPNVTLTPHIGSATSQCRGAMAACAIGNILAQMEGRILLTSV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|SPO_0913 SPO_0913 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 88/251 (35%), Positives = 127/251 (50%)

Query:    66 PTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEF 125
             P   ++A++ VG             V VTNTP                   RR  E +  
Sbjct:    66 PRCRLLANFGVGYNHIAVAAARAAGVAVTNTPGAVTDATADIAMTLLLMTARRAGEGERL 125

Query:   126 VKSGKWKNGHFE--LGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKS-DA 181
             V+SG W+  H    LG   +GK VGIVGLGRIG AIA+R    FG  +SY +RS+K  D 
Sbjct:   126 VRSGAWEGWHPTQMLGHHVTGKHVGIVGLGRIGQAIARRCHFGFGMQVSYVARSDKDVDF 185

Query:   182 NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPEL 241
                   ++  LA     L++A     ET H+++ +++ A+ PSGIL+NI RG  +DE  L
Sbjct:   186 PVSRMESLAALAGAVDFLVIAVPGGGETRHLIDAQILAAMKPSGILVNIARGEVVDEAAL 245

Query:   242 VSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
             ++            DVYE EP+VPE +  +  V LLPH+G+ TEE   +M  + ++N+ A
Sbjct:   246 IAALSERQIAGAGLDVYEFEPKVPEALRAMEQVTLLPHLGTATEEVRSSMGHMALDNVAA 305

Query:   302 HFSNKPLLTPV 312
               + + L  PV
Sbjct:   306 FAAGRDLPNPV 316

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 81/259 (31%), Positives = 128/259 (49%)

Query:    60 ELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRV 119
             E+ID+ P+L+IVA+Y  G             + VTNTP                   RR+
Sbjct:    58 EVIDAAPSLKIVANYGAGYDNIDYTYAGEKGIAVTNTPKVSTEATAELTFALLLAAARRI 117

Query:   120 CEFDEFVKSGKWKNGH---FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
              E D   ++  + NG    F LG +  GK++GI+GLG IG A+AKR +AFG  I Y   +
Sbjct:   118 PEGDTLCRTTGF-NGWAPLFFLGREVHGKTIGIIGLGEIGKAVAKRAKAFGMNILYTGPN 176

Query:   177 EKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
              K +A  +    Y  + +L      + + C+   + HH+++ +    +  +  ++N  RG
Sbjct:   177 RKPEAESELEATYVTLEELLQTADFITINCAYNPKLHHMIDEEQFKMMKKTAYIVNASRG 236

Query:   234 AHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMAD 293
               + E  L              DV+E EP++ E++ GL NVVL PHVG+ T ET  AMA+
Sbjct:   237 PIMHEAALAHALKTNEIEGAALDVFEFEPKITEELKGLKNVVLAPHVGNATFETRDAMAE 296

Query:   294 LVIENLVAHFSNKPLLTPV 312
             + + N++A    +  +TPV
Sbjct:   297 MAVRNILAVLKGEEPVTPV 315

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q48MK5 PSPPH_1099 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 89/273 (32%), Positives = 126/273 (46%)

Query:    36 NKFFQENSSAIRAVVGD-TKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVT 94
             N  F E       ++G   K G   E + +   LE+V+S SVG             + +T
Sbjct:    36 NAQFDEALPESHGLIGSGRKLGR--EQLQNAAKLEVVSSISVGYDNYDVDYLSERGILLT 93

Query:    95 NTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNG----HFELGSKFSGKSVGIV 150
             NTP                   RRV E D + K+G+W       HF  G+   GK++GIV
Sbjct:    94 NTPDVLTESTADLGFSLIMSSARRVAELDAYTKAGQWTRSIEPPHF--GTDVHGKTLGIV 151

Query:   151 GLGRIGTAIAKRVE-AFGCPISYHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLT 206
             G+G IG AIA+R    F  PI Y   S K++   +    + ++  L +    + +   L+
Sbjct:   152 GMGNIGAAIARRGRLGFNMPILYSGNSRKTELEQELGAQFRSLDQLLAEADFVCLVVPLS 211

Query:   207 EETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPE 266
             E+T H++ R+ +  + P  ILINI RG  +DEP L+             DVYE EP    
Sbjct:   212 EKTKHLIGRRELSLMKPGAILINIARGPIVDEPALIEALQNGTIRGAGLDVYEKEPLKES 271

Query:   267 QMLGLNNVVLLPHVGSDTEETSKAMADLVIENL 299
              +  L N V LPH+GS T ET +AMAD    NL
Sbjct:   272 PLFQLKNAVTLPHIGSATTETRQAMADRAYHNL 304

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5TM04 2-KGalARE "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 96/302 (31%), Positives = 138/302 (45%)

Query:     7 LMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLP 66
             L  T M+   EQ   A+ TL +    +  N   Q   SA   ++G      DAEL+D  P
Sbjct:    11 LSPTLMARLQEQ---AQVTLIETLDAAGLNALRQALPSA-DGLLG-ASLRLDAELLDLAP 65

Query:    67 TLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFV 126
              L  VAS SVG             + ++NTP                   RRV E    V
Sbjct:    66 RLRAVASVSVGVDNYDIDYLTQRRILLSNTPDVLTETTADTGFALILATARRVVELANLV 125

Query:   127 KSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSDANY 183
             ++G+W+   G    G+   GK++GI+G+GRIG A+A+R    FG P+ YHS   K     
Sbjct:   126 RAGQWQRNIGPAHFGTDVHGKTLGIIGMGRIGEALAQRGHFGFGMPLIYHSTRPKPAVEQ 185

Query:   184 KY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
             ++   Y ++  L      + +   LTE T  ++  +    + P  I INI RG  +DE  
Sbjct:   186 RFNAQYRSLEQLLEEADFICLTLPLTERTQGLIGAREFALMRPESIFINISRGKVVDEAA 245

Query:   241 LVSXXXXXXXXXXXXDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENL 299
             L+             DV+E EP +    +L L NVV  PH+GS T ET +AMA   ++NL
Sbjct:   246 LIEALQQRRIRGAGLDVFEREPLDHDSPLLQLPNVVATPHIGSATHETREAMARCAVDNL 305

Query:   300 VA 301
             +A
Sbjct:   306 LA 307

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

GO:0046487 "glyoxylate metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B2U573	GHRB_SHIB3	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
B7MER0	GHRB_ECO45	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
Q9CA90	HPR2_ARATH	1, ., 1, ., 1, ., 8, 1	0.6677	1.0	1.0	yes	no
A7ZTA0	GHRB_ECO24	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
Q0SZE5	GHRB_SHIF8	1, ., 1, ., 1, ., 8, 1	0.3514	0.9648	0.9320	yes	no
B7N1K7	GHRB_ECO81	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
Q8FCF1	GHRB_ECOL6	1, ., 1, ., 1, ., 8, 1	0.3523	0.9584	0.9259	yes	no
B7M3H6	GHRB_ECO8A	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
A1AH96	GHRB_ECOK1	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
B7NEK6	GHRB_ECOLU	1, ., 1, ., 1, ., 8, 1	0.3482	0.9648	0.9320	yes	no
C6DJ88	GHRB_PECCP	1, ., 1, ., 1, ., 8, 1	0.3642	0.9520	0.9312	yes	no
Q0TBP9	GHRB_ECOL5	1, ., 1, ., 1, ., 8, 1	0.3523	0.9584	0.9259	yes	no
B6I3C3	GHRB_ECOSE	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
Q3YVT5	GHRB_SHISS	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
C4ZXE2	GHRB_ECOBW	1, ., 1, ., 1, ., 8, 1	0.3523	0.9584	0.9259	yes	no
B7L6W9	GHRB_ECO55	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
B1X8G8	GHRB_ECODH	1, ., 1, ., 1, ., 8, 1	0.3523	0.9584	0.9259	yes	no
B5YVK6	GHRB_ECO5E	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
Q83PR3	GHRB_SHIFL	1, ., 1, ., 1, ., 8, 1	0.3546	0.9648	0.9320	yes	no
Q31V71	GHRB_SHIBS	1, ., 1, ., 1, ., 8, 1	0.3587	0.9584	0.9259	yes	no
B7LTG7	GHRB_ESCF3	1, ., 1, ., 1, ., 8, 1	0.3680	0.9520	0.9197	yes	no
A4W577	GHRB_ENT38	1, ., 1, ., 1, ., 8, 1	0.3485	0.9456	0.9135	yes	no
B1IZP1	GHRB_ECOLC	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
Q1R543	GHRB_ECOUT	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
A8A609	GHRB_ECOHS	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no
B7ULB4	GHRB_ECO27	1, ., 1, ., 1, ., 8, 1	0.3555	0.9584	0.9259	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00011297 hypothetical protein (315 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	1e-161
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	1e-109
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	1e-103
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	4e-88
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	1e-81
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	3e-81
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	6e-80
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	6e-74
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	5e-72
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	2e-71
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	2e-71
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	2e-65
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	5e-65
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	4e-63
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	4e-63
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	1e-62
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	2e-62
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	2e-56
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	9e-54
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	1e-53
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	1e-53
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	3e-51
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	4e-51
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	3e-50
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	1e-49
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	2e-48
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	1e-45
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	2e-44
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	4e-43
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	1e-41
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	1e-41
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	4e-40
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	2e-39
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	3e-39
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	6e-39
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	2e-38
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	5e-38
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	6e-38
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	4e-37
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	4e-36
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	9e-36
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	1e-34
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	9e-34
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	4e-30
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	6e-29
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	1e-28
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	3e-28
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	4e-27
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	8e-27
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	1e-26
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	3e-26
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	3e-26
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	3e-24
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	2e-21
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	2e-18
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	3e-18
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	4e-18
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	1e-17
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	5e-12
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	7e-09
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	2e-08

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  451 bits (1162), Expect = e-161
 Identities = 161/301 (53%), Positives = 210/301 (69%)

Query: 4   IGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELID 63
             VL   P+   L  EL ARFT+ +LW  +       E+   IRAVV + + G  A LI 
Sbjct: 1   PDVLQLGPLPPELLAELEARFTVHRLWEAADPAALLAEHGGRIRAVVTNGETGLSAALIA 60

Query: 64  SLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFD 123
           +LP LE++AS+ VG D IDLD  + + +RVTNTP VLTDDVADLAVGL+LAVLRR+   D
Sbjct: 61  ALPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAAD 120

Query: 124 EFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY 183
            FV++G+W  G F L  K SGK VGIVGLGRIG AIA+R+EAFG  I+YH R  K D  Y
Sbjct: 121 RFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGRRPKPDVPY 180

Query: 184 KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVS 243
           +YY ++++LA+   +L+VAC     T H+VN +V++ALGP G+L+N+ RG+ +DE  L++
Sbjct: 181 RYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDEAALIA 240

Query: 244 ALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHF 303
           AL EGR+AGAGLDV+ENEP VP  +L L+NVVL PH+ S T ET +AM DLV+ NL A F
Sbjct: 241 ALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASATVETRRAMGDLVLANLEAFF 300

Query: 304 S 304
           +
Sbjct: 301 A 301

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  318 bits (817), Expect = e-109
 Identities = 122/254 (48%), Positives = 168/254 (66%), Gaps = 6/254 (2%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DAEL+D+ P L+++A+YSVG D ID+D  K + + VTNTPDVLTD  ADLA  L+LA  R
Sbjct: 56  DAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAAR 115

Query: 118 RVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR 175
           RV E D FV++G+WK       LG+   GK++GIVG+GRIG A+A+R + FG  I YH+R
Sbjct: 116 RVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGMKILYHNR 175

Query: 176 SEKSDANYK---YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
           S K +A  +    Y ++ +L +    + + C LT ET H++N + +  + P+ ILIN  R
Sbjct: 176 SRKPEAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTAR 235

Query: 233 GAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVGSDTEETSKAM 291
           G  +DE  LV AL  G++AGAGLDV+E EP   +  +L L NVVLLPH+GS T ET  AM
Sbjct: 236 GGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTAM 295

Query: 292 ADLVIENLVAHFSN 305
           A+L  +NL+A  + 
Sbjct: 296 AELAADNLLAVLAG 309

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  303 bits (779), Expect = e-103
 Identities = 118/320 (36%), Positives = 180/320 (56%), Gaps = 10/320 (3%)

Query: 3   KIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELI 62
           KI VL T  +   + + L  +F + +       +    E      AV+       DAE++
Sbjct: 2   KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVL 61

Query: 63  DSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEF 122
           + LP L+++A+ S G D +DL+  K++ + VTN P   T+ VA+ AV L+LA+ RR+ E 
Sbjct: 62  EKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEG 121

Query: 123 DEFVKSGKW-KNGHFE--LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS 179
           D  V+ G W  +G  +  LG    GK++GI+GLGRIG A+A+R++ FG  + Y+ RS   
Sbjct: 122 DRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP 181

Query: 180 DANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI 236
           +A  +    Y ++ +L +   I+ + C LT ET H++N + +  + P  IL+N  RG  +
Sbjct: 182 EAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLV 241

Query: 237 DEPELVSALLEGRLAGAGLDVYENEPEVPEQ----MLGLNNVVLLPHVGSDTEETSKAMA 292
           DE  L+ AL  G++AGAGLDV+ENEP + +     +    NVVL PH+ S TEE  KAMA
Sbjct: 242 DEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMA 301

Query: 293 DLVIENLVAHFSNKPLLTPV 312
           +L +ENL A F        V
Sbjct: 302 ELALENLEAFFDGGVPPNEV 321

Length = 324

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  265 bits (680), Expect = 4e-88
 Identities = 93/258 (36%), Positives = 147/258 (56%), Gaps = 4/258 (1%)

Query: 48  AVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADL 107
           A++  +     AE++   P L+ +     G+D IDLD  K + + VTN P    + VA+ 
Sbjct: 44  ALIVSSTTPVTAEVLAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEH 103

Query: 108 AVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFG 167
           A+GL+LA+LRR+   D  V+ G         G +  GK+VGIVGLGRIG  +AKR++AFG
Sbjct: 104 ALGLLLALLRRLPRADAAVRRGWGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFG 163

Query: 168 CPISYHSRSEKSDA---NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS 224
             + Y+ R+ K +          ++ +L +   ++++   LT ET H++N + +  + P 
Sbjct: 164 MKVLYYDRTRKPEPEEDLGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPG 223

Query: 225 GILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVGSD 283
            +L+N  RG  +DE  L+ AL  G++AGA LDV+E EP   +  +L L NV+L PH+   
Sbjct: 224 AVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGY 283

Query: 284 TEETSKAMADLVIENLVA 301
           TEE  + MA++ +ENL  
Sbjct: 284 TEEARERMAEIAVENLER 301

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  249 bits (639), Expect = 1e-81
 Identities = 102/249 (40%), Positives = 151/249 (60%), Gaps = 8/249 (3%)

Query: 58  DAELIDSLP-TLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVL 116
           D ELI  LP +L+I+A    G D+ID+D    + ++V+NTP  + +  AD A+ L+L  L
Sbjct: 66  DEELISPLPPSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGAL 125

Query: 117 RRVCEFDEFVKSGKWKNGHFELGSKFS--GKSVGIVGLGRIGTAIAKRVEAFGCPISYHS 174
           R     +   ++GKW+ G  +L       GK++GI+GLG IG AIA++  AFG  I YH+
Sbjct: 126 RNFSRAERSARAGKWR-GFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHN 184

Query: 175 RSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
           RS   +    A   YY ++ +L +   ++ + C LT  T H++N+K    +    I++N 
Sbjct: 185 RSRLPEELEKALATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNT 244

Query: 231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKA 290
            RGA IDE  LV AL  G++A AGLDV+ENEPEV   +L + NV LLPH+G+ T ET + 
Sbjct: 245 ARGAVIDEDALVDALESGKVASAGLDVFENEPEVNPGLLKMPNVTLLPHMGTLTVETQEK 304

Query: 291 MADLVIENL 299
           M +LV+EN+
Sbjct: 305 MEELVLENI 313

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  248 bits (636), Expect = 3e-81
 Identities = 102/261 (39%), Positives = 153/261 (58%), Gaps = 6/261 (2%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           D E+ID+   L+I+A+Y  G D ID+D  K+K + VTNTP V T+  A+L  GL+LA+ R
Sbjct: 56  DKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALAR 115

Query: 118 RVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR 175
           R+ E D  ++ G +      F LG + +GK++GI+G+GRIG A+A+R +AFG  I Y++R
Sbjct: 116 RIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNR 175

Query: 176 SEKSDANYK----YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
              S+   K     Y ++ +L      + +    T ETHH+++      + P+  LIN  
Sbjct: 176 HRLSEETEKELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAA 235

Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAM 291
           RG  +DE  LV AL  G +AGA LDV+E EPEV  ++  L+NV+L PH+G+ T E   AM
Sbjct: 236 RGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNATVEARDAM 295

Query: 292 ADLVIENLVAHFSNKPLLTPV 312
           A    +N+++    K     V
Sbjct: 296 AKEAADNIISFLEGKRPKNIV 316

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  245 bits (628), Expect = 6e-80
 Identities = 110/253 (43%), Positives = 157/253 (62%), Gaps = 9/253 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           D E+ ++ P L IVA+Y+VG D ID+++   + + VTNTP VLT+  AD A  L+LA  R
Sbjct: 58  DCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATAR 117

Query: 118 RVCEFDEFVKSGKWKNGHFE------LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
           R+ E D FV+SG+WK           LG    GK++GI+G GRIG A+A+R + FG  I 
Sbjct: 118 RLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL 177

Query: 172 YHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
           Y+SR+ K +A  +    Y  + +L      + +   LT+ET+H++N + +  + P+ IL+
Sbjct: 178 YYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILV 237

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
           N  RG  +D   LV AL EG +AGAGLDV+E EP   E++  L NVVL PH+GS T E  
Sbjct: 238 NTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAR 297

Query: 289 KAMADLVIENLVA 301
           + MA+LV ENL+A
Sbjct: 298 EGMAELVAENLIA 310

Length = 333

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  229 bits (587), Expect = 6e-74
 Identities = 101/312 (32%), Positives = 167/312 (53%), Gaps = 9/312 (2%)

Query: 6   VLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRA-VVGDTKCGADAELIDS 64
           VL+T P++    +EL A + +          +   E  +   A +V  T      E++ +
Sbjct: 6   VLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIVSVTP--VTEEVLAA 63

Query: 65  LPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDE 124
            P L+ +     G+D IDL+    + + V N P      VA+L + L+LA+ RR+ + D 
Sbjct: 64  APNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADA 123

Query: 125 FVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR-SEKSDAN- 182
             + G+W    F  G++ +GK+VGI+GLGRIG A+AKR++AFG  +  +   S +  A  
Sbjct: 124 SQRRGEWDRKAF-RGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV 182

Query: 183 --YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
                  ++ +L +   IL +   LT ET  ++N + +  + P  ILIN  RG  +DE  
Sbjct: 183 DGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDA 242

Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSKAMADLVIENL 299
           L++AL  G++AGA LDV+E EP   +  L  L NV+L PH+G  T+E  + +A++V EN+
Sbjct: 243 LLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENI 302

Query: 300 VAHFSNKPLLTP 311
           V + +  P++  
Sbjct: 303 VRYLAGGPVVNN 314

Length = 324

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  224 bits (573), Expect = 5e-72
 Identities = 88/258 (34%), Positives = 141/258 (54%), Gaps = 11/258 (4%)

Query: 48  AVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADL 107
            + G        E++ + P L++++ Y VG D IDL+  K + + VTNTP   ++ VA+L
Sbjct: 51  VIAGLDPI--TEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAEL 108

Query: 108 AVGLVLAVLRRVCEFDEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAF 166
            +GL+LA+ R++ + D  V++G W +    EL     GK++GI+GLGRIG A+A+R+  F
Sbjct: 109 TIGLMLALARQIPQADREVRAGGWDRPVGTEL----YGKTLGIIGLGRIGKAVARRLSGF 164

Query: 167 GCPISYHSRSEKSDANYKYYTNIIDLA---SNCQILIVACSLTEETHHIVNRKVIDALGP 223
           G  +  +      +   ++    + L         + +   LT ET H++N   +  + P
Sbjct: 165 GMKVLAYDPYPDEEFAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKP 224

Query: 224 SGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP-EVPEQMLGLNNVVLLPHVGS 282
             ILIN  RG  +DE  L  AL  GR+AGA LDV+E EP      +L L NV+L PH+G+
Sbjct: 225 GAILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGA 284

Query: 283 DTEETSKAMADLVIENLV 300
            T+E    M  +  +N++
Sbjct: 285 STKEAVLRMGTMAAQNVI 302

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  223 bits (570), Expect = 2e-71
 Identities = 98/265 (36%), Positives = 151/265 (56%), Gaps = 5/265 (1%)

Query: 49  VVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLA 108
           +V   +   DAEL+ + P L ++    VGLD +DL+    + + V N P    + VA+ A
Sbjct: 47  LVPGMRKVIDAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHA 106

Query: 109 VGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC 168
           V L+LA+LRR+ E D  +++G+W         + SGK+VGIVGLG IG A+A+R+  FG 
Sbjct: 107 VMLMLALLRRLPEADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGV 166

Query: 169 PISYHSRSEKSDANYKY----YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS 224
            + Y+ R    +A  K     Y  + +L +   ++ +   LT ET H++  + + A+ P 
Sbjct: 167 EVIYYDRFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPG 226

Query: 225 GILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVGSD 283
            ILIN  RG  +DE  L++AL  G LAGAGLDV+  EP  P+  +L L+NV+L PH+   
Sbjct: 227 AILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGV 286

Query: 284 TEETSKAMADLVIENLVAHFSNKPL 308
           T+E+ + MA +V EN+      +P 
Sbjct: 287 TDESYQRMAAIVAENIARLLRGEPP 311

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  223 bits (570), Expect = 2e-71
 Identities = 83/258 (32%), Positives = 136/258 (52%), Gaps = 10/258 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
            AE+I++LP L+++  Y VG+D +D+    ++ + V N PD  T++VAD A+ L+LA+ R
Sbjct: 56  TAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALAR 115

Query: 118 RVCEFDEFVKSGKWKNGHFELGSK---FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS 174
           ++   D  V++G W    + +G       G ++G+VG GRIG A+AKR +AFG  +  + 
Sbjct: 116 KLPFLDRAVRAGGW---DWTVGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAYD 172

Query: 175 RSEKSDANYKYYT---NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
                           ++ +L +   ++ + C LT ET H+++ + +  + P   L+N  
Sbjct: 173 PYVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTA 232

Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSKA 290
           RG  +DE  L  AL  GR+AGA LDV E EP   +  L    NV+L PH    +EE+   
Sbjct: 233 RGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEESLAE 292

Query: 291 MADLVIENLVAHFSNKPL 308
           +     E +V     +P 
Sbjct: 293 LRRKAAEEVVRVLRGEPP 310

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  207 bits (530), Expect = 2e-65
 Identities = 87/253 (34%), Positives = 142/253 (56%), Gaps = 5/253 (1%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
            AE+I++ P L+++    VG+D ID++    + + V N P   T  VA+  + L+LA+ R
Sbjct: 53  TAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALAR 112

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS- 176
            + + D  +++GKW    F  G +  GK++GIVGLGRIG  +A+R  AFG  +  +    
Sbjct: 113 NIPQADASLRAGKWDRKKFM-GVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDPYI 171

Query: 177 --EKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234
             E++ A      ++ +L +    + +   LT ET  ++N + +  + P  ILIN  RG 
Sbjct: 172 SAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGG 231

Query: 235 HIDEPELVSALLEGRLAGAGLDVYENEPEVPE-QMLGLNNVVLLPHVGSDTEETSKAMAD 293
            +DE  L  AL  G++AGA LDV+E EP   +  +LGL NV+L PH+G+ TEE  + +A 
Sbjct: 232 IVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGASTEEAQERVAV 291

Query: 294 LVIENLVAHFSNK 306
              E ++A  + +
Sbjct: 292 DAAEQVLAVLAGE 304

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  206 bits (527), Expect = 5e-65
 Identities = 86/262 (32%), Positives = 132/262 (50%), Gaps = 8/262 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
            AE++++ P L+++A   VG+D IDLD   ++ + VTN P   T+ VA+L VGL+LA+ R
Sbjct: 51  TAEVLEAAPGLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALAR 110

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS 176
           R+ E D  V++G WK G   +G +  GK++G++G G IG   A   +A G   ++Y    
Sbjct: 111 RIPEADASVRAGDWKKGGP-IGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVVAYDPYP 169

Query: 177 EKSDANYKYYT------NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
               A             ++DL  +  ++ +A   T +T HI+  +    L  +  + N 
Sbjct: 170 NPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNA 229

Query: 231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKA 290
             G  I+E  L + L EG  A A   V E  P V   +L L NV+L PH+   TEE  + 
Sbjct: 230 RGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQEN 289

Query: 291 MADLVIENLVAHFSNKPLLTPV 312
           MA+   ENL+A          V
Sbjct: 290 MAEEAAENLLAFLKGGTPPNAV 311

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  196 bits (502), Expect = 4e-63
 Identities = 71/176 (40%), Positives = 112/176 (63%), Gaps = 4/176 (2%)

Query: 109 VGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC 168
           + L+LA+ RR+ E D  V++G+W+     LG + SGK+VGI+GLGRIG A+A+R++AFG 
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDAL-LGRELSGKTVGIIGLGRIGRAVARRLKAFGM 59

Query: 169 PISYHSRS--EKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGI 226
            +  + R    +++A    Y ++ +L +   ++ +   LT ET H++N + +  + P  I
Sbjct: 60  KVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAI 119

Query: 227 LINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVG 281
           LIN  RG  +DE  L++AL  GR+AGA LDV+E EP  P+  +L L NV+L PH+ 
Sbjct: 120 LINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  201 bits (514), Expect = 4e-63
 Identities = 89/253 (35%), Positives = 149/253 (58%), Gaps = 6/253 (2%)

Query: 59  AELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRR 118
            E+I++   L++++    G+D +DL+ CK++ + V+N     T+ VA+L +GL + +LR 
Sbjct: 61  GEVIEACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRN 120

Query: 119 VCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178
           +   D  V++G  K G   +G + +GK+VGIVG G IG  +A+  +AFGC +  +SRSEK
Sbjct: 121 IVPCDAAVRAGGTKAGL--IGRELAGKTVGIVGTGAIGLRVARLFKAFGCKVLAYSRSEK 178

Query: 179 SDANYKY--YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI 236
            +A      Y ++ +L +   I+ +   L +ET  ++ ++ +  +  S ILIN  RG  +
Sbjct: 179 EEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVV 238

Query: 237 DEPELVSALLEGRLAGAGLDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAMADL 294
           D   L  AL EG++AGAG+DV++ EP +P    +L   N +L PHV   TEE  +  A++
Sbjct: 239 DNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFATEEAMEKRAEI 298

Query: 295 VIENLVAHFSNKP 307
           V +N+ A  + KP
Sbjct: 299 VFDNIEAWLAGKP 311

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  201 bits (512), Expect = 1e-62
 Identities = 98/256 (38%), Positives = 144/256 (56%), Gaps = 7/256 (2%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DA L++ +P L   ++ SVG D  D+D    + + + +TP VLT+ VAD  + LVL+  R
Sbjct: 57  DAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTAR 116

Query: 118 RVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHS 174
           RV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++
Sbjct: 117 RVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNA 176

Query: 175 RSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
           R    +A  ++   Y ++  L      + +   LT+ETHH+   +    +  S I IN G
Sbjct: 177 RRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG 236

Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSKA 290
           RG  +DE  L++AL +G +  AGLDV+E EP  V   +L L NVV +PH+GS T ET   
Sbjct: 237 RGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN 296

Query: 291 MADLVIENLVAHFSNK 306
           MA   ++NL+     K
Sbjct: 297 MAACAVDNLIDALQGK 312

Length = 323

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  199 bits (509), Expect = 2e-62
 Identities = 89/258 (34%), Positives = 142/258 (55%), Gaps = 6/258 (2%)

Query: 49  VVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLA 108
           V   TK     E+ID+   L+I+A   VGLD ID++  K K ++V NTP   ++ VA+L 
Sbjct: 47  VRSRTK--VTKEVIDAAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELV 104

Query: 109 VGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC 168
           +GL+L++ R +   +  +K GKW    ++ G +  GK++GI+G GRIG  +AK   A G 
Sbjct: 105 IGLMLSLARFIHRANREMKLGKWNKKKYK-GIELRGKTLGIIGFGRIGREVAKIARALGM 163

Query: 169 PISYHSRSEKSDANYKYYTNIIDLA---SNCQILIVACSLTEETHHIVNRKVIDALGPSG 225
            +  +    K +   +     + L     N   + +   LT ET H++N+K ++ +    
Sbjct: 164 NVIAYDPYPKDEQAVELGVKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGA 223

Query: 226 ILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTE 285
           I+IN  RG  IDE  L+ AL  G+LAGA LDV+ENEP    ++L L NV L PH+G+ T+
Sbjct: 224 IIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPNVSLTPHIGASTK 283

Query: 286 ETSKAMADLVIENLVAHF 303
           E  + + + +   ++   
Sbjct: 284 EAQERIGEELANKIIEFL 301

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  184 bits (469), Expect = 2e-56
 Identities = 83/257 (32%), Positives = 138/257 (53%), Gaps = 20/257 (7%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DAE++  LP L+++   + G + +DL   K++ + VTN P   TD VA     L+LA+ R
Sbjct: 56  DAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALAR 115

Query: 118 RVCEFDEFVKSGKW-KNGHF--------ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC 168
            V   ++ VK+G+W K+  F        EL    +GK++GI+G G IG A+A+   AFG 
Sbjct: 116 LVAYHNDVVKAGEWQKSPDFCFWDYPIIEL----AGKTLGIIGYGNIGQAVARIARAFGM 171

Query: 169 PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
            + +  R         Y  ++ +L +   ++ + C LT ET +++N + +  + P  ILI
Sbjct: 172 KVLFAERKGAPPLREGY-VSLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILI 230

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ----MLGLNNVVLLPHVGSDT 284
           N  RG  +DE  L  AL  G++AGAGLDV   EP  P      +    N+++ PH+   +
Sbjct: 231 NTARGGLVDEQALADALNSGKIAGAGLDVLSQEP--PRADNPLLKAAPNLIITPHIAWAS 288

Query: 285 EETSKAMADLVIENLVA 301
            E  + + D++++N+ A
Sbjct: 289 REARQRLMDILVDNIKA 305

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  177 bits (452), Expect = 9e-54
 Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 8/257 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPD-VLTDDVADLAVGLVLAVL 116
           D E  +    L+++A + +G D +DL    +  V VT  P  V  D VA+ AV L+L VL
Sbjct: 60  DKEFFEYNDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVL 119

Query: 117 RRVCEFDEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV-EAFGCPI---S 171
           R++ +  E VK GKW +  +F  G + SGK+VGI+G G IG+ +A+ + E F   +    
Sbjct: 120 RKINQASEAVKEGKWTERANFV-GHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYD 178

Query: 172 YHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
            +   E          ++ +L +   I+ +   LTEET+H++N K    +    IL+N  
Sbjct: 179 PYVSEEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTA 238

Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVGSDTEETSKA 290
           RG  IDE  L+ AL  G++AGAGLDV E EP   +  +L   NVV+ PH+G+ T E+   
Sbjct: 239 RGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIGAYTYESLYG 298

Query: 291 MADLVIENLVAHFSNKP 307
           M + V++++    + K 
Sbjct: 299 MGEKVVDDIEDFLAGKE 315

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  177 bits (452), Expect = 1e-53
 Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 17/263 (6%)

Query: 55  CGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLA 114
              DAEL+D  P L+ ++  + G D IDLD  K+  + VTN P+   + VA+  + L+LA
Sbjct: 55  DKIDAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILA 114

Query: 115 VLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYH 173
           +LR     DE  K+   ++    +G +   ++VG+VG G+IG A+A+R + FG   I+Y 
Sbjct: 115 LLRNRKYIDERDKNQDLQDA-GVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYD 173

Query: 174 SRSEKSDANYKY-YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
                   +    Y ++ +L  N  I+ +   LT E HH++N +    +    I+IN  R
Sbjct: 174 PFRNPELEDKGVKYVSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTAR 233

Query: 233 GAHIDEPELVSALLEGRLAGAGLDVYENE-PEVPEQMLG-------------LNNVVLLP 278
           G+ +D   L+ AL  G++ GAGLDV E+E P++ + + G               NV++ P
Sbjct: 234 GSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNVIITP 293

Query: 279 HVGSDTEETSKAMADLVIENLVA 301
           H    T++  K M ++  EN+V 
Sbjct: 294 HTAFYTDDALKNMVEISCENIVD 316

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  177 bits (451), Expect = 1e-53
 Identities = 91/314 (28%), Positives = 156/314 (49%), Gaps = 16/314 (5%)

Query: 6   VLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSL 65
           +L+ +P+ +   + L A              +  +E + A   ++G+       EL+ + 
Sbjct: 3   ILVLSPLDDEHLERLRAAAPGA-ELRVVTAEELTEELADA-DVLLGN---PPLPELLPAA 57

Query: 66  PTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEF 125
           P L  + S S G+D +   +  ++ V +TN   +    +A+  +G +LA  R++  +   
Sbjct: 58  PRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARN 117

Query: 126 VKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY 183
               +W+      EL    +GK+V IVGLG IG  IA+R +AFG  +    RS +     
Sbjct: 118 QAERRWQRRGPVREL----AGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPV 173

Query: 184 --KYYT--NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEP 239
             + YT   + +L      ++ A  LT ET  + N +   A+ P  +LIN+GRG+ +DE 
Sbjct: 174 VDEVYTPDELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDED 233

Query: 240 ELVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSKAMADLVIEN 298
            L+ AL  GR+AGA LDV+E EP   +  L  L NV++ PH+  D+    + + ++ +EN
Sbjct: 234 ALIEALESGRIAGAALDVFEEEPLPADSPLWDLPNVIITPHISGDSPSYPERVVEIFLEN 293

Query: 299 LVAHFSNKPLLTPV 312
           L  + + +PLL  V
Sbjct: 294 LRRYLAGEPLLNVV 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  171 bits (435), Expect = 3e-51
 Identities = 79/260 (30%), Positives = 135/260 (51%), Gaps = 16/260 (6%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DA+ +D+ P L+I+A    G D  D++ C  + + VT  PD+LT+  A+L +GL++ + R
Sbjct: 57  DADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116

Query: 118 RVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR 175
            +   D FV+SGK+  G      G+   GK+VGI+G+G +G AIA+R+  FG  + Y+  
Sbjct: 117 HILAGDRFVRSGKFG-GWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDP 175

Query: 176 SEKSDANYKY----YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
                A  +        + +L  +   L++A  LT +T H++N + +  + P  +L+N  
Sbjct: 176 HPLDQAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPC 235

Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEP--------EVPEQMLGL-NNVVLLPHVGS 282
           RG+ +DE  +  AL  G L G   DV+E E          +P+++L   +  V  PH+GS
Sbjct: 236 RGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGS 295

Query: 283 DTEETSKAMADLVIENLVAH 302
             +E    +      N++  
Sbjct: 296 AVDEVRLEIELEAALNILQA 315

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  170 bits (434), Expect = 4e-51
 Identities = 79/254 (31%), Positives = 137/254 (53%), Gaps = 11/254 (4%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
            A L++ LP L+++ +  +    IDL   K++ + V  T        A+L   L+LA+ R
Sbjct: 60  PAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALAR 118

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYH 173
            + E D  +++G W+     LG+  +GK++GIVGLGRIG  +A+  +AFG  +    S  
Sbjct: 119 NLPEEDAALRAGGWQTT---LGTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWSSNL 175

Query: 174 SRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
           +    + A  +   +  +L +   ++ +   L++ T  +V  + +  + P+ +L+N  RG
Sbjct: 176 TAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRG 235

Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAM 291
             +DE  L++AL  GR+AGA LDV++ EP +P    + GL NV+L PH+G  TEE  +  
Sbjct: 236 PLVDEGALLAALRAGRIAGAALDVFDVEP-LPADHPLRGLPNVLLTPHIGYVTEEAYEGF 294

Query: 292 ADLVIENLVAHFSN 305
               +EN+ A  + 
Sbjct: 295 YGQAVENIAAWLAG 308

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  168 bits (428), Expect = 3e-50
 Identities = 74/253 (29%), Positives = 131/253 (51%), Gaps = 9/253 (3%)

Query: 55  CGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLA 114
                ++I++ P L+++     G + +D++   ++ + V NTP    + VA+  VGL+LA
Sbjct: 55  APVTKKVIEAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLA 114

Query: 115 VLRRVCEFDEFVKSGKWKNG---HFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
             R +      +K G+W+     +   G +  GK+VGIVG G IG  +AKR++AFG  + 
Sbjct: 115 ETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVL 174

Query: 172 YHS---RSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
            +      EK +A+     ++ +L     ++ +   LT ET  ++  +    + P+   I
Sbjct: 175 VYDPYVDPEKIEADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFI 234

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEE 286
           N  R   +DE  L+ AL EG++ GA LDV+  EP +P    +L L+NV L PH+   T +
Sbjct: 235 NTARAGLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVTLTPHIAGATRD 293

Query: 287 TSKAMADLVIENL 299
            ++   +++ E L
Sbjct: 294 VAERSPEIIAEEL 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  167 bits (424), Expect = 1e-49
 Identities = 82/273 (30%), Positives = 136/273 (49%), Gaps = 22/273 (8%)

Query: 53  TKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLV 112
                  E + +L  L+++   S G+D + L++  +  V V N     +  VA+ A+ L+
Sbjct: 46  GGRLTKEEALAALKRLKLIQVPSAGVDHLPLERLPEG-VVVANNHG-NSPAVAEHALALI 103

Query: 113 LAVLRRVCEFDEFVKSGKW------KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAF 166
           LA+ +R+ E+D  ++ G W      +    EL     GK+VGI+G G IG  IA+ ++AF
Sbjct: 104 LALAKRIVEYDNDLRRGIWHGRAGEEPESKEL----RGKTVGILGYGHIGREIARLLKAF 159

Query: 167 GCPISYHSRSEKSDA---NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGP 223
           G  +   SRS K D         +++ +      +++VA  LT++T  ++    + A+ P
Sbjct: 160 GMRVIGVSRSPKEDEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKP 219

Query: 224 SGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLG-------LNNVVL 276
             IL+N+GRG  +DE  L  AL E  +AGA +DV+   P   + +         L NV++
Sbjct: 220 GAILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIM 279

Query: 277 LPHVGSDTEETSKAMADLVIENLVAHFSNKPLL 309
            PH    TEET +   D   EN+  +   +PLL
Sbjct: 280 SPHNAGWTEETFRRRIDEAAENIRRYLRGEPLL 312

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  168 bits (428), Expect = 2e-48
 Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 13/267 (4%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
             E+I + P L+++    VG+D ID++    + + V N P   T   A+ A+ ++LA  R
Sbjct: 53  TEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAAR 112

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYH 173
            + + D  +K G+W    F +G++  GK++G++GLGRIG+ +AKR +AFG  +     Y 
Sbjct: 113 NIPQADASLKEGEWDRKAF-MGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI 171

Query: 174 SRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
           S         +   ++ +L +    + V   LT ET  ++  + +  +    I++N  RG
Sbjct: 172 SPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARG 231

Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMAD 293
             IDE  L  AL EG +  A LDV+E EP     +  L+NV+  PH+G+ T E  + +A 
Sbjct: 232 GIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVAT 291

Query: 294 LVIEN--------LVAHFSNKPLLTPV 312
            V E          V +  N P +   
Sbjct: 292 QVAEQVLDALKGLPVPNAVNAPGIDAD 318

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  161 bits (410), Expect = 1e-45
 Identities = 77/236 (32%), Positives = 127/236 (53%), Gaps = 12/236 (5%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
            AE++++   L+++    VG+D +D+     + + V N P   T   A+  + L+LA+ R
Sbjct: 55  TAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALAR 114

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC------P-I 170
            + +    +K+GKW+   F +G +  GK++GI+GLGRIG+ +AKR +AFG       P I
Sbjct: 115 NIPQAHASLKAGKWERKKF-MGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI 173

Query: 171 SYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
           S   R+ +         ++ +L +    + +   LT ET  ++  + +  + P   +IN 
Sbjct: 174 S-PERAAQLGVEL---VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINC 229

Query: 231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEE 286
            RG  IDE  L  AL  G++AGA LDV+E EP     +  L NVV+ PH+G+ T E
Sbjct: 230 ARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAE 285

Length = 526

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  153 bits (390), Expect = 2e-44
 Identities = 90/277 (32%), Positives = 144/277 (51%), Gaps = 31/277 (11%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DAE+++ LP L+++A+ S G D IDL+ C+++ + V N PD     VA+ A  L+LA+ R
Sbjct: 54  DAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSR 113

Query: 118 RVCEFDEFVKSGKWK---NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS 174
           ++ E  E  + G +       FEL    +GK++G+VG GRIG  +A+    FG  +  + 
Sbjct: 114 KLREAIERTRRGDFSQAGLRGFEL----AGKTLGVVGTGRIGRRVARIARGFGMKVLAYD 169

Query: 175 RSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
                +   +    Y ++ +L     I+ +    T +THH++NR+    + P  +LIN  
Sbjct: 170 VVPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLINTA 229

Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE---------------------QMLG 270
           RGA +D   LV AL EG+LAGAGLDV E E  + E                      +L 
Sbjct: 230 RGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADHALLR 289

Query: 271 LNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP 307
             NV++ PHV  +T+E  + + D  +EN+ A  + +P
Sbjct: 290 KPNVIITPHVAYNTKEALERILDTTVENIKAFAAGQP 326

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  150 bits (380), Expect = 4e-43
 Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 12/259 (4%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           D E++  LP L+++   + G + +D++  K K + V N     T+ VA     ++L++L 
Sbjct: 54  DKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLG 113

Query: 118 RVCEFDEFVKSGKWKNG----HFELG-SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY 172
           R+  +D +VKSG++       H      +  GK  GI+GLG IG  +AK  +AFG  + Y
Sbjct: 114 RINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY 173

Query: 173 HSRSEK-SDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
           +S S K  +  Y+  + + +L     I+ +   L E+T +++  K +  L    ILIN+G
Sbjct: 174 YSTSGKNKNEEYERVS-LEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVG 232

Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQML----GLNNVVLLPHVGSDTEET 287
           RG  ++E +L  AL E +   AGLDV E EP      L        +++ PH+   ++E 
Sbjct: 233 RGGIVNEKDLAKALDE-KDIYAGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEA 291

Query: 288 SKAMADLVIENLVAHFSNK 306
            K + + V EN+       
Sbjct: 292 RKTLIEKVKENIKDFLEGG 310

Length = 311

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  146 bits (371), Expect = 1e-41
 Identities = 73/270 (27%), Positives = 122/270 (45%), Gaps = 26/270 (9%)

Query: 58  DAELIDSLPTLEIVASYSVG--LDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAV 115
           DAEL+   P L  V  ++ G     +      ++ + VT+  D   + VA+  +  +L  
Sbjct: 63  DAELLARAPRLRAVV-HAAGSVRGLVTDA-VWERGILVTSAADANAEPVAEFTLAAILLA 120

Query: 116 LRRVCEFDEFVKSG-KWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS 174
           LRR+  F    ++G  W       G    G++VGIVG GRIG A+ + +  FG  +  + 
Sbjct: 121 LRRIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYD 180

Query: 175 R-----------SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGP 223
                        E    +        +L +   ++ +   LT ET  +++ +++  +  
Sbjct: 181 PYLPAAEAAALGVELVSLD--------ELLARSDVVSLHAPLTPETRGMIDARLLALMRD 232

Query: 224 SGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGS 282
               IN  RGA +DE  L++ L  GRL  A LDV + EP  P+  L  L NV+L PH+  
Sbjct: 233 GATFINTARGALVDEAALLAELRSGRL-RAALDVTDPEPLPPDSPLRTLPNVLLTPHIAG 291

Query: 283 DTEETSKAMADLVIENLVAHFSNKPLLTPV 312
            T +  + + D  ++ L    + +PLL  V
Sbjct: 292 STGDERRRLGDYALDELERFLAGEPLLHEV 321

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  145 bits (369), Expect = 1e-41
 Identities = 73/280 (26%), Positives = 129/280 (46%), Gaps = 27/280 (9%)

Query: 48  AVVGDTKCGADA--------ELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDV 99
            V  D     DA          +D  P+L+ +A    G++ ID+D    + + V NTP  
Sbjct: 23  EVKEDALEDPDALIVRSDKLHDMDFAPSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGA 82

Query: 100 LTDDVADLAVGLVLAVLRRVCEFDEFVKS--------GKWKNGHFELGSKFSGKSVGIVG 151
             + VA+L + ++LA+ R + +  ++V +        G  K     +G++  GK++G++G
Sbjct: 83  NANAVAELVIAMMLALSRNIIQAIKWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIG 142

Query: 152 LGRIGTAIAKRVEAFGCPISYHSRS------EKSDANYKYYTNIIDLASNCQILIVACSL 205
           LG IG  +A    A G  +  +          K     +  T++ +L +    + +   L
Sbjct: 143 LGNIGRLVANAALALGMKVIGYDPYLSVEAAWKLSVEVQRVTSLEELLATADYITLHVPL 202

Query: 206 TEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP 265
           T+ET  ++N +++  + P  IL+N  RG  +DE  L+ AL EG+L G   D  E     P
Sbjct: 203 TDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDFPE-----P 257

Query: 266 EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSN 305
             +  L NV+  PH+G+ TEE  +  A +    ++     
Sbjct: 258 ALLGHLPNVIATPHLGASTEEAEENCAVMAARQIMDFLET 297

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  142 bits (361), Expect = 4e-40
 Identities = 85/290 (29%), Positives = 136/290 (46%), Gaps = 30/290 (10%)

Query: 41  ENSSAIRAVVGDTKCGADAELIDSLPTLEI--VASYSVGLDKIDLDKCKDKAVRVTNTPD 98
           +   A+   V D     DA +++ L  L +  +A    G + +DL   K+  + V   P 
Sbjct: 43  KGFDAVCVFVNDD---LDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVPA 99

Query: 99  VLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFEL----GSKFSGKSVGIVGLGR 154
                VA+ AV L+LA+ R++      V+      G+F L    G    GK+VG++G G+
Sbjct: 100 YSPYAVAEHAVALLLALNRKIHRAYNRVR-----EGNFSLDGLLGFDLHGKTVGVIGTGK 154

Query: 155 IGTAIAKRVEAFGCPISYHSRSEKSDANYKY--YTNIIDLASNCQILIVACSLTEETHHI 212
           IG A A+ ++ FGC +  +      +       Y ++ +L +   I+ + C LT ETHH+
Sbjct: 155 IGQAFARILKGFGCRVLAYDPYPNPELAKLGVEYVDLDELLAESDIISLHCPLTPETHHL 214

Query: 213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE--------- 263
           +N + I  +    +LIN  RG  ID   L+ AL  G++ G GLDVYE E           
Sbjct: 215 INAETIAKMKDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEEAGLFFEDHSDE 274

Query: 264 -----VPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPL 308
                V  ++L   NV++  H    T+E    +A+  +ENL    + KPL
Sbjct: 275 IIQDDVLARLLSFPNVLITGHQAFFTKEALTNIAETTLENLDDFEAGKPL 324

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  140 bits (354), Expect = 2e-39
 Identities = 83/259 (32%), Positives = 132/259 (50%), Gaps = 19/259 (7%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           D E I+    L+ +A    GL+ IDL+  K+K + + N P+   D V + A+G++LA+  
Sbjct: 53  DKEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFN 112

Query: 118 RVCEFDEFVKSGKWK---NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYH 173
           ++   D+ V++G W    N   EL     GK+VGI+G G +G A AKR+  FGC  I+Y 
Sbjct: 113 KLNRADQEVRNGIWDREGNRGVEL----MGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYD 168

Query: 174 SRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
                 DA  +   ++  L     IL +   LT ET  +VN++ I +       IN  RG
Sbjct: 169 KYKNFGDAYAE-QVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARG 227

Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENE----------PEVPEQMLGLNNVVLLPHVGSD 283
             +   +LV AL  G++ GA LDV E E          PE  E ++    V+L PH+   
Sbjct: 228 KVVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGW 287

Query: 284 TEETSKAMADLVIENLVAH 302
           T E+ + +A+++++ + A 
Sbjct: 288 TFESYEKIAEVLVDKIKAL 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  139 bits (353), Expect = 3e-39
 Identities = 76/261 (29%), Positives = 125/261 (47%), Gaps = 13/261 (4%)

Query: 60  ELIDSLPTLEIVASYSVGLDK-IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRR 118
           E + + P +  V     G++  ++     D   R TN      + VA+ A+ L+LA LR+
Sbjct: 42  ERLPASPGVRWVQLPFAGVEAFVEAGVITDPGRRWTNAAGAYAETVAEHALALLLAGLRQ 101

Query: 119 VCEFDEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS- 176
                   ++  W      +L +   G +V IVG G IG A+   +  FG  +   +RS 
Sbjct: 102 ---LPARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLLAPFGAKVIAVNRSG 158

Query: 177 ---EKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
              E +D        + ++  +   +++A  LT ET H+V+   + A+ P   L+N+ RG
Sbjct: 159 RPVEGADETVPAD-RLDEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARG 217

Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENEPEVPE--QMLGLNNVVLLPHVGSDTEETSKAM 291
             +D   LV AL  G +AGA LDV + EP +P+   +  L N ++ PHV +  E     +
Sbjct: 218 PLVDTDALVDALRSGEIAGAALDVTDPEP-LPDGHPLWSLPNALITPHVANTPEVIRPLL 276

Query: 292 ADLVIENLVAHFSNKPLLTPV 312
           A+ V EN+ A  + +PLL  V
Sbjct: 277 AERVAENVRAFAAGEPLLGVV 297

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  138 bits (351), Expect = 6e-39
 Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 19/261 (7%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDK-CKD-KAVRVTNTPDVLTDDVADLAVGLVLAV 115
              L+  LP L+ + S   G+D +  D    D   VR+   P  L   +A+  +  VL +
Sbjct: 49  PPGLLARLPNLKAIFSLGAGVDHLLADPDLPDVPIVRLV-DPG-LAQGMAEYVLAAVLRL 106

Query: 116 LRRVCEFDEFV---KSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY 172
            R     D +    + G WK       ++     VG++GLG +G A+A+R+ A G P+S 
Sbjct: 107 HRD---MDRYAAQQRRGVWKPLPQRPAAERR---VGVLGLGELGAAVARRLAALGFPVSG 160

Query: 173 HSRSEKSDANYKYYT---NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILIN 229
            SRS K       +     +    +   IL+    LT ET  I+N +++  L     LIN
Sbjct: 161 WSRSPKDIEGVTCFHGEEGLDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAALIN 220

Query: 230 IGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETS 288
           +GRG H+ E +L++AL  G L+GA LDV+E EP   +  L     V + PH+ + T+   
Sbjct: 221 VGRGPHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHPLWRHPRVTVTPHIAAITD--P 278

Query: 289 KAMADLVIENLVAHFSNKPLL 309
            + A  V EN+    + +PL 
Sbjct: 279 DSAAAQVAENIRRLEAGEPLP 299

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  138 bits (349), Expect = 2e-38
 Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 31/284 (10%)

Query: 47  RAVVGDTKCGADAELIDSLPTLEI--VASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDV 104
             +    K    AEL++ L    +  +++ S+G D IDLD  K+  ++V+N      + V
Sbjct: 46  DGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNVT-YSPNSV 104

Query: 105 ADLAVGLVLAVLRRVCEFDEFVKSGKWK-NGH-FEL----GSKFSGKSVGIVGLGRIGTA 158
           AD  V L+L  LR+        K    +   + + L    G +    +VG++G GRIG A
Sbjct: 105 ADYTVMLMLMALRKY-------KQIMKRAEVNDYSLGGLQGRELRNLTVGVIGTGRIGQA 157

Query: 159 IAKRVEAFGCPISYHSRSEKSD-ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217
           + K +  FGC I  +      +   Y  Y ++  L     I+ +   LTEET+H++N++ 
Sbjct: 158 VIKNLSGFGCKILAYDPYPNEEVKKYAEYVDLDTLYKESDIITLHTPLTEETYHLINKES 217

Query: 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV-----------PE 266
           I  +    I+IN  RG  ID   L+  L  G++ GA LDV E E  +             
Sbjct: 218 IAKMKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNR 277

Query: 267 QMLGLN---NVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP 307
           ++  L    NV+L PH+   T++    M +  IE+LVA      
Sbjct: 278 ELAILRSFPNVILTPHMAFYTDQAVSDMVENSIESLVAFEKGGE 321

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  136 bits (345), Expect = 5e-38
 Identities = 76/261 (29%), Positives = 132/261 (50%), Gaps = 14/261 (5%)

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
            +  +  L+ +  YS G+D + L+  K K + +TN   + +  +A+  VG +L + + + 
Sbjct: 54  DLAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLK 113

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP---ISYHSRSE 177
           +  +  K  KWK        +  GK++  +G G IG  IAKR++AFG     ++   R  
Sbjct: 114 KAYKNQKEKKWK--MDSSLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGR-- 169

Query: 178 KSDANY--KYYT--NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
             D  Y  K Y    + ++     I++    LTEETHH+ +    + +    + IN+GRG
Sbjct: 170 --DVEYFDKCYPLEELDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRG 227

Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSKAMA 292
             +DE  L+ AL   ++ GA LDV+E EP   +  L  L+NV++ PH+   +E  ++ + 
Sbjct: 228 PSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSPLWDLDNVLITPHISGVSEHFNERLF 287

Query: 293 DLVIENLVAHFSNKPLLTPVI 313
           D+  ENL +   +  LL  V+
Sbjct: 288 DIFYENLKSFLEDGELLKNVV 308

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  137 bits (347), Expect = 6e-38
 Identities = 76/260 (29%), Positives = 130/260 (50%), Gaps = 23/260 (8%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLT---DDVADLAVGLVLA 114
           DA++I     ++++  + VGL+ +D+D      ++V   P   T      A++A+ L+L 
Sbjct: 73  DADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLG 132

Query: 115 VLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS 174
           +LR+    +E   S K +     +G    GK+V I+G G IG  +AKR+  FG  +    
Sbjct: 133 LLRKQ---NEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATR 189

Query: 175 RS---EKSDANYKYYTNIIDL-------------ASNCQILIVACSLTEETHHIVNRKVI 218
           RS   E  D       ++ DL             A    I+++ C+LT+ET  IVN + +
Sbjct: 190 RSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFL 249

Query: 219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE-QMLGLNNVVLL 277
            ++    +L+NI RG  +D   +++AL  G L G  +DV  +EP  P+  +L   NV++ 
Sbjct: 250 SSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIIT 309

Query: 278 PHVGSDTEETSKAMADLVIE 297
           PHV   TE + ++M  +V +
Sbjct: 310 PHVAGVTEYSYRSMGKIVGD 329

Length = 347

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  134 bits (340), Expect = 4e-37
 Identities = 83/264 (31%), Positives = 134/264 (50%), Gaps = 22/264 (8%)

Query: 58  DAELIDSLPTLEI--VASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAV 115
           D E+ + L    I  +A  S G+D IDLD  K+  +++TN P      +A+ AV   L +
Sbjct: 57  DEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRAIAEFAVTQALNL 116

Query: 116 LRRVCEFDEFVKSG--KWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISY 172
           LR   E D  V  G  +W  G   +G +    +VGI+G GRIG+A AK  + FG   I+Y
Sbjct: 117 LRNTPEIDRRVAKGDFRWAPGL--IGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVIAY 174

Query: 173 H-SRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
               + + +    YY ++ DL     I+ +   LT+E HH++N +    +    IL+N  
Sbjct: 175 DPYPNPELEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAA 234

Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENE--------------PEVPEQMLGLNNVVLL 277
           RG  +D   L+ AL  G++AGA LD YENE               EV ++++ + NV++ 
Sbjct: 235 RGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEVLKELIAMPNVLIT 294

Query: 278 PHVGSDTEETSKAMADLVIENLVA 301
           PH+   T+   K M ++ +++ + 
Sbjct: 295 PHIAFYTDTAVKNMVEISLDDALE 318

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  131 bits (332), Expect = 4e-36
 Identities = 73/254 (28%), Positives = 116/254 (45%), Gaps = 7/254 (2%)

Query: 57  ADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVL 116
              E + +LP L +V + S G D + L    +  V + N   V     A+LAV L+LA L
Sbjct: 50  PVLEALRALPRLRVVQTLSAGYDGV-LPLLPE-GVTLCNARGVHDASTAELAVALILASL 107

Query: 117 RRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
           R +  F      G+W+       S  + + V IVG G IG AI +R+  F   ++  +R+
Sbjct: 108 RGLPRFVRAQARGRWE--PRRTPS-LADRRVLIVGYGSIGRAIERRLAPFEVRVTRVART 164

Query: 177 EKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI 236
            +          +  L     ++++   LT+ET  +V+ + +  +    +L+N+ RG  +
Sbjct: 165 ARPGEQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVV 224

Query: 237 DEPELVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSKAMADLV 295
           D   LV+ L  GRL  A LDV + EP  P   L     V++ PHVG  T         LV
Sbjct: 225 DTDALVAELASGRLR-AALDVTDPEPLPPGHPLWSAPGVLITPHVGGATPAFLPRAYALV 283

Query: 296 IENLVAHFSNKPLL 309
              L  + + +PL 
Sbjct: 284 RRQLRRYAAGEPLE 297

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  132 bits (333), Expect = 9e-36
 Identities = 76/259 (29%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 72  ASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKW 131
           ++ +VG + +D++      + V NTP VLT+  A+LA  L LA  RR+ E DEF+++G +
Sbjct: 91  SNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150

Query: 132 KN--GHFELGSKFSGKSVGIVGLGRIGTAIAKR-VEAFGCPISYH-----SRSEKSDANY 183
           +    H  +G+   G++VG++G GRIG+A A+  VE F   + Y+     +R EK    Y
Sbjct: 151 EGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAY 210

Query: 184 --------------KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILIN 229
                         K  +++ ++     ++ +   L + T+H++N++ +  +    +L+N
Sbjct: 211 GQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVN 270

Query: 230 IGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSK 289
             RG  IDE  LV  L    +   GLDV+E+EP +   +  + N V++PH+ S ++ T +
Sbjct: 271 ASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTRE 330

Query: 290 AMADLVIENLVAHFSNKPL 308
            MA L   N++      P+
Sbjct: 331 GMATLAALNVLGKLKGYPV 349

Length = 386

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  127 bits (322), Expect = 1e-34
 Identities = 75/266 (28%), Positives = 126/266 (47%), Gaps = 24/266 (9%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DA  + + P L+++   + G + +DL   +++ + V N     T  VA   + L+LA+  
Sbjct: 57  DAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALAT 116

Query: 118 RVCEFDEFVKSGKW-KNGHF--------ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC 168
           R+ ++ + V +G+W ++  F        EL     GK++G++G G +G A+A+  EAFG 
Sbjct: 117 RLPDYQQAVAAGRWQQSSQFCLLDFPIVEL----EGKTLGLLGHGELGGAVARLAEAFGM 172

Query: 169 PI---SYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSG 225
            +       R  + D        + +L      L + C LTE T H++  + +  + P  
Sbjct: 173 RVLIGQLPGRPARPDR-----LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA 227

Query: 226 ILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQML---GLNNVVLLPHVGS 282
           +LIN  RG  +DE  L  AL  G L GA  DV   EP V    L    +  +++ PH   
Sbjct: 228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAW 287

Query: 283 DTEETSKAMADLVIENLVAHFSNKPL 308
            + E  + +   + EN  A F+ KPL
Sbjct: 288 GSREARQRIVGQLAENARAFFAGKPL 313

Length = 317

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  125 bits (316), Expect = 9e-34
 Identities = 72/252 (28%), Positives = 125/252 (49%), Gaps = 13/252 (5%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
             E++++ P L  +  + +G +++DLD    + + V N P   T  VA+L +G ++ + R
Sbjct: 55  TEEVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLAR 114

Query: 118 RVCEFDEFVKSGKWK---NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS 174
           R+ + +     G W     G  E+     GK++GI+G G IG+ ++   EA G  + ++ 
Sbjct: 115 RLPDRNAAAHRGIWNKSATGSHEV----RGKTLGIIGYGHIGSQLSVLAEALGMRVIFYD 170

Query: 175 RSEK-SDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
            +EK    N +  +++ +L +    + +    T  T +++  + I  +    ILIN  RG
Sbjct: 171 IAEKLPLGNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRG 230

Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETS 288
             +D   L  AL  G LAGA +DV+  EP    +     + GL NV+L PH+G  TEE  
Sbjct: 231 TVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPHIGGSTEEAQ 290

Query: 289 KAMADLVIENLV 300
           + +   V   LV
Sbjct: 291 ENIGLEVAGKLV 302

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score =  115 bits (289), Expect = 4e-30
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 11/256 (4%)

Query: 57  ADAELIDSLPTL----EIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLV 112
           A+A LI          +++ S S G+D ID+    +  V  +N     +  VA+ A  L+
Sbjct: 35  AEAILIKGRYVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALL 93

Query: 113 LAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY 172
           LA  + +CE +  +K+G +K    +L      KS+GI+G G IG  +A   +AFG  I  
Sbjct: 94  LAWAKNICENNYNMKNGNFKQSPTKL---LYNKSLGILGYGGIGRRVALLAKAFGMNIYA 150

Query: 173 HSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
           ++RS  +D     Y    D+      ++++  LT+ET  ++N K++        +IN+ R
Sbjct: 151 YTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVAR 210

Query: 233 GAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHV-GSDTEETSKAM 291
              +D+ ++++ L          DV+ NEP + E     +NV+L PHV G  + E  +  
Sbjct: 211 ADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETN--PDNVILSPHVAGGMSGEIMQPA 268

Query: 292 ADLVIENLVAHFSNKP 307
             L  EN+   F  KP
Sbjct: 269 VALAFENIKNFFEGKP 284

Length = 303

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  112 bits (282), Expect = 6e-29
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 11/228 (4%)

Query: 90  AVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKS-GKWKNGHFELGSKFSGKSVG 148
              VT    V  + +A+  +  +LA  +R+ E   +VK   +W+     LGS  +G ++G
Sbjct: 85  GPVVTCARGVAAEAIAEFVLAAILAAAKRLPE--IWVKGAEQWR--REPLGS-LAGSTLG 139

Query: 149 IVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD--ANYKYYTNIIDLASNCQILIVACSLT 206
           IVG G IG A+A+R  A G  +    RS +       +   ++ +L +    L++A  LT
Sbjct: 140 IVGFGAIGQALARRALALGMRVLALRRSGRPSDVPGVEAAADLAELFARSDHLVLAAPLT 199

Query: 207 EETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE 266
            ET H++N  V+    P   LINI RG  +D+  L+ AL  GR++ A LDV + EP +PE
Sbjct: 200 PETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTDPEP-LPE 258

Query: 267 QMLGLNN--VVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312
                 +  V L PH  +   +  + +AD  +ENL  + + +PL   V
Sbjct: 259 GHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQPLHDLV 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  112 bits (283), Expect = 1e-28
 Identities = 67/261 (25%), Positives = 110/261 (42%), Gaps = 15/261 (5%)

Query: 59  AELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRR 118
           AE I   P L++  +  +G D +DL    +  + V       +  VA+  V ++LA++R 
Sbjct: 106 AERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRN 165

Query: 119 VCEFDEFVKSGKWK-----NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH 173
                     G W      +  ++L     G +VGIVG GRIG A+ +R++ F   + Y 
Sbjct: 166 YEPSHRQAVEGGWNIADCVSRSYDL----EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT 221

Query: 174 SRSEKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
            R    +         Y+ +   L S C ++ + C L  ET H+ +  V+  +     L+
Sbjct: 222 DRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV 281

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVGSDTEET 287
           N  RG  +D   +V AL  G LAG   DV+  +P   +     +    + PH+   T   
Sbjct: 282 NTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSA 341

Query: 288 SKAMADLVIENLVAHFSNKPL 308
               A    E L   F  +P+
Sbjct: 342 QARYAAGTREILECFFEGRPI 362

Length = 385

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  112 bits (282), Expect = 3e-28
 Identities = 77/262 (29%), Positives = 129/262 (49%), Gaps = 25/262 (9%)

Query: 59  AELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRR 118
            E++ +   L  +  + +G +++DLD    + + V N P   T  VA+L +G ++ +LR 
Sbjct: 67  EEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRG 126

Query: 119 VCEFDEFVKSGKWK---NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR 175
           + E +     G W     G FE+     GK++GIVG G IGT ++   E+ G  + ++  
Sbjct: 127 IPEKNAKAHRGGWNKSAAGSFEV----RGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDI 182

Query: 176 SEK-SDANYKYYTNIIDLASNCQILIVACSL----TEETHHIVNRKVIDALGPSGILINI 230
            +K    N +   ++ +L +   ++    SL    T  T +++  + +  + P  ILIN 
Sbjct: 183 EDKLPLGNARQVGSLEELLAQSDVV----SLHVPETPSTKNMIGAEELALMKPGAILINA 238

Query: 231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEP-------EVPEQMLGLNNVVLLPHVGSD 283
            RG  +D   L  AL  G LAGA +DV+  EP       E P +  GL+NV+L PH+G  
Sbjct: 239 SRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLR--GLDNVILTPHIGGS 296

Query: 284 TEETSKAMADLVIENLVAHFSN 305
           T+E  + +   V   LV +  N
Sbjct: 297 TQEAQENIGLEVAGKLVKYSDN 318

Length = 409

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  108 bits (271), Expect = 4e-27
 Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 46/247 (18%)

Query: 46  IRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVA 105
           +R+V   TK   +  L++    ++ V + ++G D ID D  K++ +   N P    + VA
Sbjct: 42  VRSV---TKV--NEALLEGSK-VKFVGTATIGTDHIDTDYLKERGIGFANAPGCNANSVA 95

Query: 106 DLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEA 165
           +     VL+ L       +              G    GK+VGIVG+G +G+ +A+R+EA
Sbjct: 96  EY----VLSAL---LVLAQ------------RQGFSLKGKTVGIVGVGNVGSRLARRLEA 136

Query: 166 FGC------PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEE----THHIVNR 215
            G       P     R+E        + ++ +L +   I+ +   LT +    T+H+++ 
Sbjct: 137 LGMNVLLCDPP----RAEAEGDPG--FVSLEELLAEADIITLHVPLTRDGEHPTYHLLDE 190

Query: 216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVV 275
             + AL P  ILIN  RGA ID   L++ L  G+     LDV+ENEPE+  ++L   + V
Sbjct: 191 DFLAALKPGQILINASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLELL---DKV 247

Query: 276 LL--PHV 280
            +  PH+
Sbjct: 248 DIATPHI 254

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  106 bits (267), Expect = 8e-27
 Identities = 65/254 (25%), Positives = 121/254 (47%), Gaps = 15/254 (5%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
             E +  LP L+++A  + G + +DL   K+  + V N     +  V +  +G++ A+  
Sbjct: 56  TRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKH 115

Query: 118 RVCEFDEFVKSGKWKN-GHFELG----SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY 172
            +  +     S +W     F       +   G ++G+ G G +GT + +  +A G  + Y
Sbjct: 116 SLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLY 175

Query: 173 HSRSEKSDANY--KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
              +E   A+   + YT   ++     I+ + C LTE T +++N + +  + P+  LIN 
Sbjct: 176 ---AEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINT 232

Query: 231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQML-----GLNNVVLLPHVGSDTE 285
           GRG  +DE  L+ AL  G++AGA LDV   EP   +  L      L N+++ PH+   ++
Sbjct: 233 GRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASD 292

Query: 286 ETSKAMADLVIENL 299
                + + V +N+
Sbjct: 293 SAVTTLVNKVAQNI 306

Length = 314

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  107 bits (268), Expect = 1e-26
 Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 19/262 (7%)

Query: 59  AELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRR 118
           AE I     L++  +  +G D +DL    D+ + V          VA+  V ++L ++R 
Sbjct: 76  AERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRN 135

Query: 119 VCEFDEFVKSGKWK-----NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH 173
                E    G W         ++L     GK+VG VG GRIG  + +R++ F   + Y+
Sbjct: 136 YVPGHEQAIEGGWNVADVVKRAYDL----EGKTVGTVGAGRIGLRVLRRLKPFDVHLLYY 191

Query: 174 SRSEKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
            R    +          + ++ D+ S C ++ + C L  ET  + N++++  +     L+
Sbjct: 192 DRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLV 251

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP---EVPEQMLGLNNVVLLPHVGSDTE 285
           N  RG   D   +  AL  G LAG   DV+  +P   + P + +   N  + PH+   T 
Sbjct: 252 NTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMP--NNAMTPHISGTTL 309

Query: 286 ETSKAMADLVIENLVAHFSNKP 307
           +     A    E L   F  +P
Sbjct: 310 DAQARYAAGTKEILERFFEGEP 331

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  105 bits (264), Expect = 3e-26
 Identities = 75/271 (27%), Positives = 120/271 (44%), Gaps = 19/271 (7%)

Query: 48  AVVGDTKCGADAELIDSLPTLEI--VASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVA 105
           AV+    C AD E ++      I  V + +VG + IDL+  K+   ++   P    + +A
Sbjct: 47  AVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNAIA 106

Query: 106 DLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEA 165
           +LA  L + + R          +  +K   F    +    +VGI+G GRIG   AK  + 
Sbjct: 107 ELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIGLTAAKLFKG 166

Query: 166 FGCP-ISYHSRSEKSDANYKYYTNIIDLASNCQILIVACS-LTEETHHIVNRKVIDALGP 223
            G   I Y      +  +   + ++ +L     I+ +    +  +   ++N++ I  +  
Sbjct: 167 LGAKVIGYDIYPSDAAKDVVTFVSLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKD 226

Query: 224 SGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV--------------PEQML 269
             ILIN  RG   DE  ++ AL  G+LAG G DV  NE E+               E++L
Sbjct: 227 GAILINTARGELQDEEAILEALESGKLAGFGTDVLNNEKEIFFKDFDGDKIEDPVVEKLL 286

Query: 270 GLNNVVLL-PHVGSDTEETSKAMADLVIENL 299
            L   VLL PH+GS T+E    M +   ENL
Sbjct: 287 DLYPRVLLTPHIGSYTDEALSNMIETSYENL 317

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  105 bits (264), Expect = 3e-26
 Identities = 71/288 (24%), Positives = 118/288 (40%), Gaps = 46/288 (15%)

Query: 63  DSLPTLEIVASYSVGLDK-IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCE 121
           + +P L +V  +S G D  +     KD  V +     +    +A+  +G  L +     +
Sbjct: 50  EDVPNLRLVQLFSAGADHWLGHPLYKDPEVPLCTASGIHGPQIAEWVIGTWLVLSHHFLQ 109

Query: 122 FDEFVKSGKWKNGHFELGSKFS-GKSVGIVGLGRIGTAIAKRVEAFGC------------ 168
           + E  K   W         + S GK VGI+G G IG   A+  +A G             
Sbjct: 110 YIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGMEVYAYTRSPRPT 169

Query: 169 ---------------------PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTE 207
                                P ++ S ++K+  +         L  +  +L+V+  LT 
Sbjct: 170 PESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEF-------LRQDLDLLVVSLPLTP 222

Query: 208 ETHHIVNRKVIDALGPSG-ILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE 266
            T H++  +  + L      + NI RG+ +D   LV+AL  G++ GA LDV + EP +P 
Sbjct: 223 ATKHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEP-LPA 281

Query: 267 Q--MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312
              +    NV++ PHV   T+E      D++ ENL      +PL+  V
Sbjct: 282 DHPLWSAPNVIITPHVSWQTQEYFDRALDVLEENLERLRKGEPLINLV 329

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 99.8 bits (249), Expect = 3e-24
 Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%)

Query: 104 VADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELG-----------SKFSGKSVGIVGL 152
           VA+  + L+LA +RR+ E  E  +  +W     ELG           +   G  V I G 
Sbjct: 95  VAEHTLALILAAVRRLDEMREAQREHRWAG---ELGGLQPLRPAGRLTTLLGARVLIWGF 151

Query: 153 GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYT--NIIDLASNCQILIVACSLTEETH 210
           G IG  +A  + A G  ++  +RS    A +       + +L     +L++    T  T 
Sbjct: 152 GSIGQRLAPLLTALGARVTGVARSAGERAGFPVVAEDELPELLPETDVLVMILPATPSTA 211

Query: 211 HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ--M 268
           H ++ +V+ AL     ++N+GRGA +DE  LV+AL  GRL GA LDV   EP +P    +
Sbjct: 212 HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEP-LPASSPL 270

Query: 269 LGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPL 308
               N++L PH      + +    +L+ ENL A  +  PL
Sbjct: 271 WDAPNLILTPHAAGGRPQGA---EELIAENLRAFLAGGPL 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 92.3 bits (229), Expect = 2e-21
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 71  VASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGK 130
           +A  + G D  DLD  K   + ++N P    + +A+ +V + L ++RR  + +  V++  
Sbjct: 73  IAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHD 132

Query: 131 WKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI-SYHSRSEKSDANYKYYTNI 189
           +      +       +V I+G GRIG A AK    FG  I +Y +   K      Y  ++
Sbjct: 133 FTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSV 192

Query: 190 IDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGR 249
            +   +  I+ +     +E++H+ ++ + D +    IL+N  RGA I+ P+L++A+ +G 
Sbjct: 193 KEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGT 252

Query: 250 LAGAGLDVYENE 261
           L GA +D YENE
Sbjct: 253 LLGAAIDTYENE 264

Length = 330

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 83.7 bits (207), Expect = 2e-18
 Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 7/181 (3%)

Query: 108 AVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFG 167
           AV  VL   RR  ++     S  W+         F+   +GI+G G +G+ +A+ ++ +G
Sbjct: 103 AVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFT---IGILGAGVLGSKVAQSLQTWG 159

Query: 168 CPISYHSRSEKSDANYKYYTNIIDLA---SNCQILIVACSLTEETHHIVNRKVIDALGPS 224
            P+   SRS KS    + +    +L+   S  ++LI     T ET  I+N+++++ L   
Sbjct: 160 FPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDG 219

Query: 225 GILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLN-NVVLLPHVGSD 283
             L+N+ RG H+ E +L++AL  G++ GA LDV+  EP  PE  L  +  V + PHV + 
Sbjct: 220 AYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAV 279

Query: 284 T 284
           T
Sbjct: 280 T 280

Length = 312

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 20/248 (8%)

Query: 71  VASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGK 130
           +A  S G D  DL+      + ++N P    + +A+  V   + ++R   +    V+   
Sbjct: 73  IAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHD 132

Query: 131 WKNGHFELGSKFSGKSVGIVGLGRIGTAIAK-RVEAFGCP-ISYHSRSEKSDANYKYYTN 188
           ++     L        V ++G GRIG A+AK   + +G   ++Y        A Y  Y +
Sbjct: 133 FRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKD 192

Query: 189 IIDLA-SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247
            I+ A     I+ +    T+  H++ N  +        + +N  RG+ +D   L+ AL  
Sbjct: 193 TIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDN 252

Query: 248 GRLAGAGLDVYENE-PEVP-------------EQMLGLNNVVLLPHVGSDTEETSKAMAD 293
           G + GA LD YE E P  P             E ++   +V+L PH+   T+    A+ +
Sbjct: 253 GLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDA---AVKN 309

Query: 294 LVIENLVA 301
           L+++ L A
Sbjct: 310 LIVDALDA 317

Length = 332

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 83.4 bits (206), Expect = 4e-18
 Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 6/210 (2%)

Query: 59  AELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRR 118
           AE I     LE++ +  +G D IDL       + V          VA+  +  +L +LR 
Sbjct: 113 AERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRN 172

Query: 119 VCEFDEFVKSGKWK-NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
                  V SG+W   G         GK+VG VG GRIG  + +R++ F C + YH R +
Sbjct: 173 FLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK 232

Query: 178 -----KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
                + +   K+  ++  +   C ++++   LTE+T  + N++ I  +    +++N  R
Sbjct: 233 MDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNAR 292

Query: 233 GAHIDEPELVSALLEGRLAGAGLDVYENEP 262
           GA +D   +  A   G + G G DV+  +P
Sbjct: 293 GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322

Length = 386

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 42/245 (17%)

Query: 46  IRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVA 105
           +R+V   T+   D  L++    +  V + ++G D +DLD   +  +  ++ P      V 
Sbjct: 43  VRSV---TRV--DRALLEGSR-VRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVV 96

Query: 106 DLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEA 165
           D     VL  L  + E +               G   + ++ G+VG G +G  + + +  
Sbjct: 97  DY----VLGSLLTLAERE---------------GVDLAERTYGVVGAGHVGGRLVRVLRG 137

Query: 166 FG-----CPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEE----THHIVNRK 216
            G     C           D     + ++  +   C ++ +   LT+E    T H+++  
Sbjct: 138 LGWKVLVCDPPRQEAEGDGD-----FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEA 192

Query: 217 VIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVL 276
            + +L P   LIN  RGA +D   L  ALL G    A LDV+E EP++  ++  L    +
Sbjct: 193 FLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL--CTI 250

Query: 277 -LPHV 280
             PH+
Sbjct: 251 ATPHI 255

Length = 381

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 65.7 bits (160), Expect = 5e-12
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 15/157 (9%)

Query: 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFG-----CPISYHSRSEKSDANYKYYTNIIDLA 193
           G     ++VGIVG+G +G  +  R+EA G     C      R ++ D     + ++ +L 
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGD-----FRSLDELV 165

Query: 194 SNCQILIVACSLTEE----THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGR 249
               IL     L ++    T H+ + K+I +L P  ILIN  RGA +D   L++ L EG+
Sbjct: 166 QEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQ 225

Query: 250 LAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEE 286
                LDV+E EPE+  ++L   ++   PH+   T E
Sbjct: 226 KLSVVLDVWEGEPELNVELLKKVDIG-TPHIAGYTLE 261

Length = 378

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 19/175 (10%)

Query: 131 WKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---ANYKYYT 187
           WK    EL    +G  VGI+GLG  G  IA  +  FG  + Y+SR+ K D      +Y  
Sbjct: 129 WKEEPREL----TGLKVGIIGLGTTGQMIADALSFFGADVYYYSRTRKPDAEAKGIRYLP 184

Query: 188 NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE 247
              +L     ++   C+   +   ++  +  + LG   IL N   G   +        L+
Sbjct: 185 L-NELLKTVDVI---CTCLPKNVILLGEEEFELLGDGKILFNTSLGPSFEVEA-----LK 235

Query: 248 GRLAGAGLDVYENEPE---VPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENL 299
             L  +G ++++ +       E++L   NV+        T +  + ++  V+ NL
Sbjct: 236 KWLKASGYNIFDCDTAGALGDEELLRYPNVICTNKSAGWTRQAFERLSQKVLANL 290

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 19/226 (8%)

Query: 49  VVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKA-VRVTNTPDVLTDDVADL 107
            V +    A+  LI  L    ++ +Y++G D  DL +   +A +       V    +   
Sbjct: 70  KVKEPLTNAEYALIQKLG-DRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSN 128

Query: 108 AVGLV-LAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAF 166
           ++G   L+V       +                    GK+V +VG G +G   A+ +   
Sbjct: 129 SIGAGELSVQFIARFLEVQQPGRLGGAPDVA------GKTVVVVGAGVVGKEAAQMLRGL 182

Query: 167 GCPISYH-----SRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK-VIDA 220
           G  +        +  +  +   K    + +  +   +++    L  +   I+  + +++ 
Sbjct: 183 GAQVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQ 242

Query: 221 LGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE 266
           + P  +++N+  GA      L + LLE    G G+  Y  +  +P 
Sbjct: 243 MKPGSVIVNVAVGAVGCVQALHTQLLEE---GHGVVHY-GDVNMPG 284

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.97
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.9
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.86
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.82
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.65
PLN02494	477	adenosylhomocysteinase	99.6
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.51
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.51
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.49
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.48
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.38
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.34
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.32
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.29
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.28
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.28
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.28
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.21
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.15
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.13
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.11
PLN02712	667	arogenate dehydrogenase	99.09
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.09
PLN02256	304	arogenate dehydrogenase	99.09
PLN02858	1378	fructose-bisphosphate aldolase	99.07
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.05
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.04
PLN02858	1378	fructose-bisphosphate aldolase	99.02
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.01
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.99
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.99
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.92
PRK08655	437	prephenate dehydrogenase; Provisional	98.9
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.9
PLN02712	667	arogenate dehydrogenase	98.89
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.88
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.86
PRK07417	279	arogenate dehydrogenase; Reviewed	98.86
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.86
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.83
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.82
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.82
PRK05225	487	ketol-acid reductoisomerase; Validated	98.82
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.81
PLN02688	266	pyrroline-5-carboxylate reductase	98.79
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.79
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.78
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.77
PRK06545	359	prephenate dehydrogenase; Validated	98.76
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.75
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.73
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.71
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.7
PRK08818	370	prephenate dehydrogenase; Provisional	98.7
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.69
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.67
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.66
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.66
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.66
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.65
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.65
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.64
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.63
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.62
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.62
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.62
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.62
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.6
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.58
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.58
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.58
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.57
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.57
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.56
PRK08507	275	prephenate dehydrogenase; Validated	98.56
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.54
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.5
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.5
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.49
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.47
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.45
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.45
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.44
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.44
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.43
PRK07680	273	late competence protein ComER; Validated	98.43
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.42
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.41
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.38
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.37
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.36
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.34
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.33
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.31
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.29
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.28
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.24
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.23
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.21
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.21
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.2
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.2
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.2
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.16
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.13
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.11
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.11
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.1
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.1
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.1
PLN00203	519	glutamyl-tRNA reductase	98.09
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.09
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.08
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.08
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.07
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.06
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.04
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.04
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.02
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.02
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.99
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.99
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.97
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.97
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.96
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.95
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.93
PRK06141	314	ornithine cyclodeaminase; Validated	97.93
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.93
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.92
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.91
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.89
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.88
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.84
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.82
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.82
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.82
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.81
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.8
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.8
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.79
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.78
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.77
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.77
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.73
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.72
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.64
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.64
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.63
PRK07340	304	ornithine cyclodeaminase; Validated	97.63
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.61
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.6
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.56
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.55
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.52
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.52
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.52
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.51
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.51
PRK06046	326	alanine dehydrogenase; Validated	97.5
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.48
PRK08618	325	ornithine cyclodeaminase; Validated	97.48
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.47
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.47
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.47
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.47
PRK14982	340	acyl-ACP reductase; Provisional	97.45
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.45
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.45
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.43
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.39
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.38
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.38
PLN02477	410	glutamate dehydrogenase	97.37
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.36
PRK06823	315	ornithine cyclodeaminase; Validated	97.35
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.33
PRK06199	379	ornithine cyclodeaminase; Validated	97.32
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.31
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	97.3
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.3
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.3
PTZ00117	319	malate dehydrogenase; Provisional	97.28
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.26
PRK08291	330	ectoine utilization protein EutC; Validated	97.26
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.26
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.25
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.23
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.21
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.2
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.19
PRK06407	301	ornithine cyclodeaminase; Provisional	97.19
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.17
PRK14031	444	glutamate dehydrogenase; Provisional	97.14
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.13
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.12
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.1
PRK07589	346	ornithine cyclodeaminase; Validated	97.08
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.04
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.03
PRK09414	445	glutamate dehydrogenase; Provisional	97.03
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	97.03
PRK06444	197	prephenate dehydrogenase; Provisional	97.02
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.96
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.94
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.89
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.88
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.88
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.87
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.86
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.84
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.83
PRK14030	445	glutamate dehydrogenase; Provisional	96.82
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.77
PRK06223	307	malate dehydrogenase; Reviewed	96.76
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.73
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.73
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.72
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.71
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.7
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.68
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.66
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.64
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.63
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.63
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.61
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.57
PLN02527	306	aspartate carbamoyltransferase	96.57
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.56
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.53
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.53
COG5322	351	Predicted dehydrogenase [General function predicti	96.48
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.45
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.45
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.44
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.38
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.37
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.37
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.33
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.3
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.27
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.27
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.27
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.26
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.26
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.24
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	96.23
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.22
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.22
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.16
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.11
PRK08328	231	hypothetical protein; Provisional	96.09
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.08
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.07
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.06
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.04
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.03
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	96.01
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.99
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.99
PRK02102	331	ornithine carbamoyltransferase; Validated	95.97
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	95.97
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.97
PRK10637	457	cysG siroheme synthase; Provisional	95.96
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.96
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.94
PRK08223	287	hypothetical protein; Validated	95.92
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.89
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.89
PRK12862	763	malic enzyme; Reviewed	95.87
PRK06270	341	homoserine dehydrogenase; Provisional	95.86
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.85
PRK09496	453	trkA potassium transporter peripheral membrane com	95.85
PLN02342	348	ornithine carbamoyltransferase	95.83
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.83
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.81
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.81
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.77
PRK04284	332	ornithine carbamoyltransferase; Provisional	95.77
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.76
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.75
PRK11579	346	putative oxidoreductase; Provisional	95.75
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	95.75
PRK07411	390	hypothetical protein; Validated	95.75
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	95.74
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.72
PRK12861	764	malic enzyme; Reviewed	95.7
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.7
PLN02602	350	lactate dehydrogenase	95.68
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.67
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.66
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.61
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.6
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.59
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.58
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.53
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.51
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.48
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	95.48
PRK13529	563	malate dehydrogenase; Provisional	95.44
PRK07877	722	hypothetical protein; Provisional	95.44
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.36
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.35
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	95.34
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	95.31
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.31
PRK14804	311	ornithine carbamoyltransferase; Provisional	95.3
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.27
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.27
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.26
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.26
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.26
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	95.26
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.25
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.21
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.21
PRK05086	312	malate dehydrogenase; Provisional	95.18
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	95.17
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	95.12
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	95.12
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.11
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.09
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.08
PRK08192	338	aspartate carbamoyltransferase; Provisional	95.07
PRK07806	248	short chain dehydrogenase; Provisional	95.07
PRK04148	134	hypothetical protein; Provisional	95.03
PRK10669	558	putative cation:proton antiport protein; Provision	94.99
PRK06349	426	homoserine dehydrogenase; Provisional	94.97
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	94.97
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.97
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	94.96
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.95
PRK06392	326	homoserine dehydrogenase; Provisional	94.94
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	94.93
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	94.91
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.88
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.85
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	94.84
PRK09496	453	trkA potassium transporter peripheral membrane com	94.76
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.76
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.76
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.74
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.73
PRK15076	431	alpha-galactosidase; Provisional	94.7
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	94.68
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.56
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.53
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.52
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.41
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.4
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	94.39
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	94.39
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.38
PLN02586	360	probable cinnamyl alcohol dehydrogenase	94.09
PRK14851	679	hypothetical protein; Provisional	94.05
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.05
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	94.04
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.03
PRK05442	326	malate dehydrogenase; Provisional	93.99
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.97
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	93.96
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	93.96
PLN00106	323	malate dehydrogenase	93.91
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	93.91
PRK07523	255	gluconate 5-dehydrogenase; Provisional	93.9
PRK08265	261	short chain dehydrogenase; Provisional	93.89
PRK06523	260	short chain dehydrogenase; Provisional	93.83
PLN02214	342	cinnamoyl-CoA reductase	93.82
PLN00112	444	malate dehydrogenase (NADP); Provisional	93.81
PTZ00317	559	NADP-dependent malic enzyme; Provisional	93.79
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	93.79
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	93.71
PTZ00325	321	malate dehydrogenase; Provisional	93.7
PLN03209	576	translocon at the inner envelope of chloroplast su	93.7
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.69
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	93.67
PRK10206	344	putative oxidoreductase; Provisional	93.67
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	93.64
CHL00194	317	ycf39 Ycf39; Provisional	93.64
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.63
PRK12937	245	short chain dehydrogenase; Provisional	93.63
PRK08374	336	homoserine dehydrogenase; Provisional	93.54
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	93.53
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.51
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.49
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.49
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	93.49
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.48
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	93.38
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.35
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	93.34
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	93.27
PLN02178	375	cinnamyl-alcohol dehydrogenase	93.14
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	93.13
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.12
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	93.12
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	93.11
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	93.09
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.09
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	93.02
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	93.0
PRK08324	681	short chain dehydrogenase; Validated	92.96
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	92.94
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	92.92
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.91
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	92.84
PRK14805	302	ornithine carbamoyltransferase; Provisional	92.83
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.8
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.8
PLN02427	386	UDP-apiose/xylose synthase	92.77
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.75
PRK06701	290	short chain dehydrogenase; Provisional	92.72
PRK09186	256	flagellin modification protein A; Provisional	92.69
PRK08264	238	short chain dehydrogenase; Validated	92.69
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	92.67
PRK05884	223	short chain dehydrogenase; Provisional	92.64
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.61
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	92.59
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	92.57
PRK06153	393	hypothetical protein; Provisional	92.51
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	92.5
PRK05717	255	oxidoreductase; Validated	92.47
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	92.46
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	92.46
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	92.46
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	92.45
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.41
PRK12367	245	short chain dehydrogenase; Provisional	92.39
PRK06841	255	short chain dehydrogenase; Provisional	92.39
PRK06196	315	oxidoreductase; Provisional	92.39
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.36
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	92.35
PRK14852	989	hypothetical protein; Provisional	92.29
PLN02896	353	cinnamyl-alcohol dehydrogenase	92.28
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	92.25
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	92.24
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	92.22
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.21
PRK06128	300	oxidoreductase; Provisional	92.21
PRK06172	253	short chain dehydrogenase; Provisional	92.17
PRK07890	258	short chain dehydrogenase; Provisional	92.16
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.13
COG2344	211	AT-rich DNA-binding protein [General function pred	92.09
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	92.07
PRK06398	258	aldose dehydrogenase; Validated	92.07
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.05
COG2910	211	Putative NADH-flavin reductase [General function p	91.99
PLN02740	381	Alcohol dehydrogenase-like	91.98
PLN02514	357	cinnamyl-alcohol dehydrogenase	91.95
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	91.9
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	91.86
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	91.84
PRK08628	258	short chain dehydrogenase; Provisional	91.81
PRK07856	252	short chain dehydrogenase; Provisional	91.79
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	91.72
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	91.68
PRK06182	273	short chain dehydrogenase; Validated	91.64
PRK12939	250	short chain dehydrogenase; Provisional	91.62
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	91.56
PRK08862	227	short chain dehydrogenase; Provisional	91.47
PRK05866	293	short chain dehydrogenase; Provisional	91.32
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	91.31
PRK10537	393	voltage-gated potassium channel; Provisional	91.31

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=4.6e-73  Score=528.82  Aligned_cols=309  Identities=34%  Similarity=0.542  Sum_probs=277.2

Q ss_pred             ceEEEEeCCCChHHHHHHHhcCcEEEecC-CCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361            3 KIGVLMTTPMSNYLEQELAARFTLFKLWT-QSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      +|+|++++++.++..+.|++.+++..... .+...+++.+.++++|+++++ ..++++++++++|+||||++.|+|+|+|
T Consensus         2 ~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G~d~i   80 (323)
T PRK15409          2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVGYDNF   80 (323)
T ss_pred             CceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECceecccc
Confidence            38899999998888888888776654322 122345566678899999875 4589999999999999999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCC--CcccccccCCCEEEEEcCChhHHHH
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNG--HFELGSKFSGKSVGIVGLGRIGTAI  159 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~vgiiG~G~iG~~~  159 (313)
                      |+++|.++||.|+|+|++++++||||++++||++.|++..+++.+++|.|...  ....|++|+||++||||+|+||+.+
T Consensus        81 d~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~v  160 (323)
T PRK15409         81 DVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMAL  160 (323)
T ss_pred             cHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999632  1224789999999999999999999


Q ss_pred             HHHHH-hcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          160 AKRVE-AFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       160 a~~l~-~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      |++++ +|||+|.+|+|+....    .+. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+
T Consensus       161 a~~l~~~fgm~V~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~  239 (323)
T PRK15409        161 AQRAHFGFNMPILYNARRHHKEAEERFNA-RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP  239 (323)
T ss_pred             HHHHHhcCCCEEEEECCCCchhhHHhcCc-EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence            99998 9999999999875432    122 24689999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          235 HIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       235 ~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      +||++||+++|++|+++||+||||++||++. +|||++|||++|||+||+|.+++.++...+++||.+|++|+++.+.||
T Consensus       240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  319 (323)
T PRK15409        240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN  319 (323)
T ss_pred             ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            9999999999999999999999999999864 589999999999999999999999999999999999999999998876

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.2e-73  Score=528.21  Aligned_cols=308  Identities=31%  Similarity=0.507  Sum_probs=276.9

Q ss_pred             CCceEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361            1 MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK   80 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      +.+++|+.++++.+..++.+................+++.+.++++|++++ ...++++++++++|+||||++.|+|+||
T Consensus         1 ~~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~   79 (324)
T COG0111           1 KMMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDN   79 (324)
T ss_pred             CCcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccc
Confidence            357889999999999998887652222211222234556677899999998 7889999999999999999999999999


Q ss_pred             CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHH
Q 021361           81 IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIA  160 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a  160 (313)
                      +|+++++++||.|+|+|+.|+.+||||+++++|+++|+++.+++.+++|.|.+. ...|.+|+||||||||+|+||+.+|
T Consensus        80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-~~~g~el~gkTvGIiG~G~IG~~va  158 (324)
T COG0111          80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRK-AFRGTELAGKTVGIIGLGRIGRAVA  158 (324)
T ss_pred             cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccc-ccccccccCCEEEEECCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999862 3357799999999999999999999


Q ss_pred             HHHHhcCCcEEEECCCCccc-c---cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCcc
Q 021361          161 KRVEAFGCPISYHSRSEKSD-A---NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI  236 (313)
Q Consensus       161 ~~l~~~g~~V~~~~~~~~~~-~---~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v  236 (313)
                      +++++|||+|++|||..... .   +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++|
T Consensus       159 ~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vV  238 (324)
T COG0111         159 KRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVV  238 (324)
T ss_pred             HHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCccee
Confidence            99999999999999955432 2   2344578999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEccCCCCCCCCCc-ccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021361          237 DEPELVSALLEGRLAGAGLDVYENEPEVPE-QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLT  310 (313)
Q Consensus       237 d~~al~~al~~g~~~ga~lDV~~~EP~~~~-~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  310 (313)
                      |++||++||++|+|+||+||||++||++++ |||++|||++|||+||.|.++.+++...+++|+.+|++|+++.|
T Consensus       239 de~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~  313 (324)
T COG0111         239 DEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN  313 (324)
T ss_pred             cHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999998875 99999999999999999999999999999999999999999543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=2.2e-71  Score=515.36  Aligned_cols=309  Identities=38%  Similarity=0.620  Sum_probs=280.7

Q ss_pred             ceEEEEeCCCChHHHHHHHhcCcEEEecCC-CcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361            3 KIGVLMTTPMSNYLEQELAARFTLFKLWTQ-SCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      |+.++.+.++.++..+++.+.|++..+... +... ++.+..+++|++++....++++++++++|+||+|+..++|+||+
T Consensus         2 k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~v   80 (324)
T COG1052           2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNV   80 (324)
T ss_pred             CcEEEecCcCCHHHHHHhhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcc
Confidence            567888889999999999988887654432 2222 56677899999999878999999999999999999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC---cccccccCCCEEEEEcCChhHHH
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH---FELGSKFSGKSVGIVGLGRIGTA  158 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~---~~~~~~l~g~~vgiiG~G~iG~~  158 (313)
                      |+++++++||.|+|+|++++++||||++++||++.|++.++++++|+|.|....   ...+++++|||+||||+|+||++
T Consensus        81 Dl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~a  160 (324)
T COG1052          81 DLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQA  160 (324)
T ss_pred             cHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHH
Confidence            999999999999999999999999999999999999999999999999998542   24578999999999999999999


Q ss_pred             HHHHHHhcCCcEEEECCCCcc----cccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          159 IAKRVEAFGCPISYHSRSEKS----DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       159 ~a~~l~~~g~~V~~~~~~~~~----~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      +|+++++|||+|.||+|++.+    ..++.+ .++++++++||+|++|||+|++|+|+||++.|++||+|+++||+|||+
T Consensus       161 vA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y-~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~  239 (324)
T COG1052         161 VARRLKGFGMKVLYYDRSPNPEAEKELGARY-VDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG  239 (324)
T ss_pred             HHHHHhcCCCEEEEECCCCChHHHhhcCcee-ccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence            999999999999999999752    122333 459999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEccCCCCCCCC-CcccCCCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021361          235 HIDEPELVSALLEGRLAGAGLDVYENEPEV-PEQMLGLNN---VVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLT  310 (313)
Q Consensus       235 ~vd~~al~~al~~g~~~ga~lDV~~~EP~~-~~~l~~~pn---vi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  310 (313)
                      +||++||++||++|+++||++|||+.||.. +++|++++|   +++|||+|++|.+++.+|.+.+++|+++|++|+++.+
T Consensus       240 ~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~  319 (324)
T COG1052         240 LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPN  319 (324)
T ss_pred             ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999999985 568887766   9999999999999999999999999999999999999


Q ss_pred             CCC
Q 021361          311 PVI  313 (313)
Q Consensus       311 ~v~  313 (313)
                      .|+
T Consensus       320 ~v~  322 (324)
T COG1052         320 EVN  322 (324)
T ss_pred             CCC
Confidence            875

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=1.3e-70  Score=515.14  Aligned_cols=310  Identities=39%  Similarity=0.597  Sum_probs=278.2

Q ss_pred             ceEEEEeCCCChHHHHHHHhcCcEEEecCC-CcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361            3 KIGVLMTTPMSNYLEQELAARFTLFKLWTQ-SCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      ||+|++++++.+...+.+++.+++..+... ....+++.+.++++|+++++...++++++++++|+||||+++|+|+|++
T Consensus         2 ~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~i   81 (333)
T PRK13243          2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNI   81 (333)
T ss_pred             CceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCcccccc
Confidence            378999998888888888877655433211 2234556667889999998766689999999999999999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC------cccccccCCCEEEEEcCChh
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH------FELGSKFSGKSVGIVGLGRI  155 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~------~~~~~~l~g~~vgiiG~G~i  155 (313)
                      |+++++++||.|+|++|+++.+||||++++||+++|++..+++.+++|.|.+..      ...|++|+||+|||||+|.|
T Consensus        82 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~I  161 (333)
T PRK13243         82 DVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRI  161 (333)
T ss_pred             CHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHH
Confidence            999999999999999999999999999999999999999999999999997321      12468999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEECCCCcccc----cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          156 GTAIAKRVEAFGCPISYHSRSEKSDA----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       156 G~~~a~~l~~~g~~V~~~~~~~~~~~----~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      |+.+|++|++|||+|.+|||+.....    +. ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|
T Consensus       162 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a  240 (333)
T PRK13243        162 GQAVARRAKGFGMRILYYSRTRKPEAEKELGA-EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA  240 (333)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCChhhHHHcCC-EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence            99999999999999999999765421    12 24589999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021361          232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTP  311 (313)
Q Consensus       232 rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  311 (313)
                      ||+++|+++|+++|++|+|+||+||||++||++++|||++|||++|||+||+|.++..++.+.+++|+.+|++|+++.|.
T Consensus       241 Rg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~  320 (333)
T PRK13243        241 RGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPTL  320 (333)
T ss_pred             CchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            99999999999999999999999999999998877999999999999999999999999999999999999999999988


Q ss_pred             CC
Q 021361          312 VI  313 (313)
Q Consensus       312 v~  313 (313)
                      ||
T Consensus       321 v~  322 (333)
T PRK13243        321 VN  322 (333)
T ss_pred             cC
Confidence            75

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-70  Score=510.21  Aligned_cols=299  Identities=26%  Similarity=0.431  Sum_probs=263.2

Q ss_pred             EEEEeCC--CChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCC
Q 021361            5 GVLMTTP--MSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKID   82 (313)
Q Consensus         5 ~vl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   82 (313)
                      +|++.++  +.+..++.|++.+++..+ .. ...+++.+.++++|+++++ ..++++++++++|+||||+++|+|+|++|
T Consensus         2 ki~~~~~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   78 (311)
T PRK08410          2 KIVILDAKTLGDKDLSVFEEFGDFQIY-PT-TSPEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVD   78 (311)
T ss_pred             eEEEEecCCCChhhHHHHhhCceEEEe-CC-CCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEccccccccc
Confidence            4666665  566667778776654432 21 1334556678899999875 56899999999999999999999999999


Q ss_pred             hhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCc-----ccccccCCCEEEEEcCChhHH
Q 021361           83 LDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHF-----ELGSKFSGKSVGIVGLGRIGT  157 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgiiG~G~iG~  157 (313)
                      +++++++||.|+|+|++++++||||++++||+++|++..+++.+++|.|.....     ..+++|+||+|||||+|+||+
T Consensus        79 ~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~  158 (311)
T PRK08410         79 IEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGK  158 (311)
T ss_pred             HHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHH
Confidence            999999999999999999999999999999999999999999999999974221     124789999999999999999


Q ss_pred             HHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccC
Q 021361          158 AIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID  237 (313)
Q Consensus       158 ~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd  237 (313)
                      .+|+++++|||+|++|||+...........++++++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||
T Consensus       159 ~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVD  238 (311)
T PRK08410        159 RVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVN  238 (311)
T ss_pred             HHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccC
Confidence            99999999999999999975432211124689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361          238 EPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGL---NNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP  307 (313)
Q Consensus       238 ~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~---pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  307 (313)
                      ++||+++|++|+++ |+||||++||+++ +|||++   |||++|||+||+|.++..++...+++|+.+|++|++
T Consensus       239 e~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        239 EKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             HHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999 9999999999875 589986   899999999999999999999999999999999974

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=5.3e-70  Score=523.10  Aligned_cols=312  Identities=25%  Similarity=0.406  Sum_probs=279.4

Q ss_pred             CCceEEEEeCCCChHHHHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCC
Q 021361            1 MEKIGVLMTTPMSNYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLD   79 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   79 (313)
                      |++++|++++++.+...+.|++. ++.+.........+++.+.++++|++++.+..++++++++++|+||||+++|+|+|
T Consensus         8 ~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   87 (409)
T PRK11790          8 KDKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGTN   87 (409)
T ss_pred             CCCeEEEEECCCCHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceecc
Confidence            45789999998888888888764 52332222223445566678899998877667899999999999999999999999


Q ss_pred             cCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHH
Q 021361           80 KIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAI  159 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~  159 (313)
                      ++|+++++++||.|+|+||+++++||||++++||++.|++..+++.+++|.|.+.. ..+++|+||+|||||+|+||+.+
T Consensus        88 ~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~L~gktvGIiG~G~IG~~v  166 (409)
T PRK11790         88 QVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA-AGSFEVRGKTLGIVGYGHIGTQL  166 (409)
T ss_pred             cccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc-cCcccCCCCEEEEECCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997532 34789999999999999999999


Q ss_pred             HHHHHhcCCcEEEECCCCcccc-cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361          160 AKRVEAFGCPISYHSRSEKSDA-NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       160 a~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      |+++++|||+|++||++..... +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||+
T Consensus       167 A~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde  246 (409)
T PRK11790        167 SVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI  246 (409)
T ss_pred             HHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCH
Confidence            9999999999999998754322 233456899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCceEEEccCCCCCCCCC-----cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          239 PELVSALLEGRLAGAGLDVYENEPEVP-----EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       239 ~al~~al~~g~~~ga~lDV~~~EP~~~-----~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      +||+++|++|+++||++|||++||++.     +|||++|||++|||+||+|.++.+++...+++|+.+|++|+++.+.||
T Consensus       247 ~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn  326 (409)
T PRK11790        247 DALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAVN  326 (409)
T ss_pred             HHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCccee
Confidence            999999999999999999999999764     489999999999999999999999999999999999999999998876

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-69  Score=505.52  Aligned_cols=304  Identities=25%  Similarity=0.430  Sum_probs=264.1

Q ss_pred             EEEEeCCC----ChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361            5 GVLMTTPM----SNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK   80 (313)
Q Consensus         5 ~vl~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      +|++.+..    .+...+.+++.+..+..... ...+++.+.++++|+++++ ..++++++++++|+||||+++|+|+|+
T Consensus         2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~   79 (317)
T PRK06487          2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDA-TTPEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTNN   79 (317)
T ss_pred             eEEEEccccCCccccchhHHHhhCCeEEEecC-CCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCccccc
Confidence            36666542    23455667766544333222 2345566778899988875 467999999999999999999999999


Q ss_pred             CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCc-----ccccccCCCEEEEEcCChh
Q 021361           81 IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHF-----ELGSKFSGKSVGIVGLGRI  155 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgiiG~G~i  155 (313)
                      +|++++.++||.|+|++++++.+||||++++||++.|++..+++.+++|.|.....     ..+++|+||+|||||+|+|
T Consensus        80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I  159 (317)
T PRK06487         80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL  159 (317)
T ss_pred             cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence            99999999999999999999999999999999999999999999999999974211     1246899999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          156 GTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       156 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                      |+.+|+++++|||+|++|+|+.... .. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++
T Consensus       160 G~~vA~~l~~fgm~V~~~~~~~~~~-~~-~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~v  237 (317)
T PRK06487        160 GGAVARLAEAFGMRVLIGQLPGRPA-RP-DRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL  237 (317)
T ss_pred             HHHHHHHHhhCCCEEEEECCCCCcc-cc-cccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccc
Confidence            9999999999999999999874322 22 235899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCC--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021361          236 IDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLG--LNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV  312 (313)
Q Consensus       236 vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~--~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v  312 (313)
                      ||++||+++|++|+++||+||||++||+++ +|||.  +|||++|||+||+|.++.+++...+++|+++|++|+|+ +.|
T Consensus       238 Vde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~-~~v  316 (317)
T PRK06487        238 VDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL-RVV  316 (317)
T ss_pred             cCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-cCC
Confidence            999999999999999999999999999876 58995  89999999999999999999999999999999999865 444


Q ss_pred             C
Q 021361          313 I  313 (313)
Q Consensus       313 ~  313 (313)
                      |
T Consensus       317 ~  317 (317)
T PRK06487        317 S  317 (317)
T ss_pred             C
Confidence            3

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=5.4e-69  Score=510.64  Aligned_cols=311  Identities=26%  Similarity=0.413  Sum_probs=274.0

Q ss_pred             ceEEEEeCCCChH-HHHHHHhc-CcEEEecC-C-CcchhhHHhcc-CCceEEEeeCCCCCCHHHhhcCCC--ceEEEEcC
Q 021361            3 KIGVLMTTPMSNY-LEQELAAR-FTLFKLWT-Q-SCKNKFFQENS-SAIRAVVGDTKCGADAELIDSLPT--LEIVASYS   75 (313)
Q Consensus         3 ~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~-~-~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~   75 (313)
                      |++|+++.++.+. ..+.|++. +++..+.. . ....+++.+.+ +++|+++++...++++++++++|+  ||+|++.|
T Consensus        15 ~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~~~   94 (386)
T PLN02306         15 KYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMA   94 (386)
T ss_pred             CceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEECC
Confidence            6889999998774 67777764 55543221 1 23445566665 579999987777899999999996  69999999


Q ss_pred             CCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcC-C-CcccccccCCCEEEEEcCC
Q 021361           76 VGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKN-G-HFELGSKFSGKSVGIVGLG  153 (313)
Q Consensus        76 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~-~-~~~~~~~l~g~~vgiiG~G  153 (313)
                      +|+||+|+++++++||.|+|++++++.+||||++++||++.|++..+++.+++|.|.. . ....|++|+||+|||||+|
T Consensus        95 ~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G  174 (386)
T PLN02306         95 VGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAG  174 (386)
T ss_pred             cccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCC
Confidence            9999999999999999999999999999999999999999999999999999998852 1 1224789999999999999


Q ss_pred             hhHHHHHHHHH-hcCCcEEEECCCCcccc-------c------------ccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          154 RIGTAIAKRVE-AFGCPISYHSRSEKSDA-------N------------YKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       154 ~iG~~~a~~l~-~~g~~V~~~~~~~~~~~-------~------------~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      .||+.+|++++ +|||+|++|||+.+...       +            .....++++++++||+|++|+|+|++|+++|
T Consensus       175 ~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li  254 (386)
T PLN02306        175 RIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI  254 (386)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc
Confidence            99999999985 99999999998764210       0            1123589999999999999999999999999


Q ss_pred             CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHH
Q 021361          214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMAD  293 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~  293 (313)
                      +++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||+++++||++|||++|||+||+|.++++++.+
T Consensus       255 n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~~~~~~~  334 (386)
T PLN02306        255 NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREGMAT  334 (386)
T ss_pred             CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998777999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCC
Q 021361          294 LVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       294 ~~~~ni~~~~~g~~~~~~v~  313 (313)
                      .+++|+.+|++|+++.|.||
T Consensus       335 ~~~~ni~~~~~g~~~~~~~~  354 (386)
T PLN02306        335 LAALNVLGKLKGYPVWGDPN  354 (386)
T ss_pred             HHHHHHHHHHcCCCCccccc
Confidence            99999999999999999876

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-68  Score=497.82  Aligned_cols=270  Identities=24%  Similarity=0.430  Sum_probs=245.9

Q ss_pred             hhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHH
Q 021361           36 NKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAV  115 (313)
Q Consensus        36 ~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~  115 (313)
                      .+++.+.++++|+++.. ..++++++++++|+||||++.++|+|++|++++.++||.|+|+|++++++||||++++||++
T Consensus        35 ~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~  113 (314)
T PRK06932         35 AEQTIERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFAL  113 (314)
T ss_pred             hHHHHHHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHH
Confidence            45556677899988874 56799999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHcCCCcCCCc-----ccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHH
Q 021361          116 LRRVCEFDEFVKSGKWKNGHF-----ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNII  190 (313)
Q Consensus       116 ~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~  190 (313)
                      .|++..+++.+++|.|.....     ..+++|+||+|||||+|.||+.+|+++++|||+|.+|+++....... .+.+++
T Consensus       114 ~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~-~~~~l~  192 (314)
T PRK06932        114 KHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCRE-GYTPFE  192 (314)
T ss_pred             HhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccccccc-ccCCHH
Confidence            999999999999999973211     12468999999999999999999999999999999999865322221 246899


Q ss_pred             HHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccC
Q 021361          191 DLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQML  269 (313)
Q Consensus       191 ~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~  269 (313)
                      +++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+++||+||||++||+++ +|||
T Consensus       193 ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~  272 (314)
T PRK06932        193 EVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLI  272 (314)
T ss_pred             HHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999865 5898


Q ss_pred             ----CCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361          270 ----GLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP  307 (313)
Q Consensus       270 ----~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  307 (313)
                          ++|||++|||+||+|.++.+++.+.+++|+++|++|++
T Consensus       273 ~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        273 QAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             HhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence                59999999999999999999999999999999999874

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1.4e-67  Score=496.65  Aligned_cols=305  Identities=26%  Similarity=0.437  Sum_probs=266.5

Q ss_pred             CCceEEEEeCCCChHH---HHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCC
Q 021361            1 MEKIGVLMTTPMSNYL---EQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVG   77 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G   77 (313)
                      |.||+||++.+..+..   .+++.+.+++..+.. . ..+++.+.++++|+++++ ..++++++++++|+||||++.++|
T Consensus        16 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G   92 (347)
T PLN02928         16 MRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDA-V-AREDVPDVIANYDICVPK-MMRLDADIIARASQMKLIMQFGVG   92 (347)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHhhcCCeeEecC-C-CHHHHHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCcc
Confidence            5688999998776653   223323444433222 1 234456677899998875 457899999999999999999999


Q ss_pred             CCcCChhhhhcCCcEEEeCCCC---CcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCCh
Q 021361           78 LDKIDLDKCKDKAVRVTNTPDV---LTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGR  154 (313)
Q Consensus        78 ~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~  154 (313)
                      +|++|++++.++||.|+|+|++   ++.+||||+++++|+++|++..+++.+++|.|..   +.+++|+||++||||+|.
T Consensus        93 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~gktvGIiG~G~  169 (347)
T PLN02928         93 LEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE---PIGDTLFGKTVFILGYGA  169 (347)
T ss_pred             cCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc---ccccCCCCCEEEEECCCH
Confidence            9999999999999999999975   7899999999999999999999999999999964   346789999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEECCCCccccc----------------ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          155 IGTAIAKRVEAFGCPISYHSRSEKSDAN----------------YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       155 iG~~~a~~l~~~g~~V~~~~~~~~~~~~----------------~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      ||+.+|++|++|||+|++|||+......                .....++++++++||+|++|+|+|++|+++|+++.|
T Consensus       170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l  249 (347)
T PLN02928        170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFL  249 (347)
T ss_pred             HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHH
Confidence            9999999999999999999997432110                013468999999999999999999999999999999


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIE  297 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~  297 (313)
                      ++||+|++|||+|||++||++||+++|++|++.||+||||++||+++ +|||++|||++|||+||+|.++++++.+.+++
T Consensus       250 ~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~  329 (347)
T PLN02928        250 SSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGD  329 (347)
T ss_pred             hcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999865 59999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCC
Q 021361          298 NLVAHFSNKPLLTP  311 (313)
Q Consensus       298 ni~~~~~g~~~~~~  311 (313)
                      |+.+|++|+|+.+.
T Consensus       330 nl~~~~~g~~~~~~  343 (347)
T PLN02928        330 AALQLHAGRPLTGI  343 (347)
T ss_pred             HHHHHHCCCCCCce
Confidence            99999999988764

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-67  Score=497.39  Aligned_cols=294  Identities=24%  Similarity=0.394  Sum_probs=262.2

Q ss_pred             HHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeC--CCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEE
Q 021361           18 QELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDT--KCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVT   94 (313)
Q Consensus        18 ~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~   94 (313)
                      +.|++. ++++...+.+...+++.+.++++|++++..  ..++++++++++|+||||+++|+|+|++|++++.++||.|+
T Consensus        62 ~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~  141 (385)
T PRK07574         62 KFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVA  141 (385)
T ss_pred             HHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEE
Confidence            456655 444433222224466677789999999853  35799999999999999999999999999999999999999


Q ss_pred             eCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC-cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEE
Q 021361           95 NTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH  173 (313)
Q Consensus        95 n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~  173 (313)
                      |++++++.+||||++++||++.|++..+++.+++|.|.... ...+++|+|++|||||+|+||+.+|++|++|||+|++|
T Consensus       142 n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~  221 (385)
T PRK07574        142 EVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT  221 (385)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            99999999999999999999999999999999999997432 12467899999999999999999999999999999999


Q ss_pred             CCCCcc-----cccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          174 SRSEKS-----DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       174 ~~~~~~-----~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      ||+...     ..+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||+++|++|
T Consensus       222 dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG  301 (385)
T PRK07574        222 DRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG  301 (385)
T ss_pred             CCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence            998632     123334578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021361          249 RLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTP  311 (313)
Q Consensus       249 ~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  311 (313)
                      +|+||++|||++||+++ +|||++|||++|||+||+|.++++++.+.+++|+++|++|+++.|.
T Consensus       302 ~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~  365 (385)
T PRK07574        302 HLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE  365 (385)
T ss_pred             CccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999875 5999999999999999999999999999999999999999999875

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=3.9e-67  Score=518.21  Aligned_cols=306  Identities=27%  Similarity=0.444  Sum_probs=276.2

Q ss_pred             EEEEeCCCChHHHHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCCh
Q 021361            5 GVLMTTPMSNYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDL   83 (313)
Q Consensus         5 ~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      +|++++++.++..+.|++. +++.. .. ....+++.+.++++|++++++..++++++++++|+||||+++|+|+|++|+
T Consensus         1 ~vli~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~   78 (525)
T TIGR01327         1 KVLIADPISPDGIDILEDVGVEVDV-QT-GLSREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDI   78 (525)
T ss_pred             CEEEeCCCCHHHHHHHHhcCcEEEe-CC-CCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcH
Confidence            4788999888888888765 44432 22 123455667789999999877778999999999999999999999999999


Q ss_pred             hhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHH
Q 021361           84 DKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l  163 (313)
                      +++.++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+. ...|.+|+||+|||||+|+||+.+|++|
T Consensus        79 ~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~-~~~g~~l~gktvgIiG~G~IG~~vA~~l  157 (525)
T TIGR01327        79 EAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK-AFMGTELYGKTLGVIGLGRIGSIVAKRA  157 (525)
T ss_pred             HHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc-ccCccccCCCEEEEECCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999753 2357899999999999999999999999


Q ss_pred             HhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          164 EAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       164 ~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      ++|||+|++|||+....    .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++
T Consensus       158 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~  237 (525)
T TIGR01327       158 KAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEA  237 (525)
T ss_pred             HhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHH
Confidence            99999999999864321    23333458999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          240 ELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       240 al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      ||+++|++|+++||+||||++||++++|||++|||++|||+||+|.+++.++...+++|+.+|++|+++.+.||
T Consensus       238 aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  311 (525)
T TIGR01327       238 ALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVN  311 (525)
T ss_pred             HHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceee
Confidence            99999999999999999999999777899999999999999999999999999999999999999999998875

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-66  Score=493.52  Aligned_cols=293  Identities=22%  Similarity=0.342  Sum_probs=259.9

Q ss_pred             HHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeC--CCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEE
Q 021361           17 EQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDT--KCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRV   93 (313)
Q Consensus        17 ~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v   93 (313)
                      .+.|++. ++++...+.+...+++.+.++++|++++..  ..++++++++++|+||||++.|+|+||||++++.++||.|
T Consensus        68 ~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V  147 (386)
T PLN03139         68 RDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTV  147 (386)
T ss_pred             HHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEE
Confidence            4556655 344433322234456677789999999853  2479999999999999999999999999999999999999


Q ss_pred             EeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC-cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEE
Q 021361           94 TNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY  172 (313)
Q Consensus        94 ~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~  172 (313)
                      +|++|+++.+||||++++||++.|++..+++.+++|.|.... ...+++|.||+|||||+|+||+.+|++|++|||+|.+
T Consensus       148 ~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~  227 (386)
T PLN03139        148 AEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY  227 (386)
T ss_pred             EECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE
Confidence            999999999999999999999999999999999999997422 2346899999999999999999999999999999999


Q ss_pred             ECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          173 HSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       173 ~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      ||++....     .++....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||+++|++
T Consensus       228 ~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s  307 (386)
T PLN03139        228 HDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS  307 (386)
T ss_pred             ECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence            99975321     2333456899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021361          248 GRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLL  309 (313)
Q Consensus       248 g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~  309 (313)
                      |+++||++|||++||++. +|||.+||+++|||+||.|.+++.++.+.+++|+++|++|+++.
T Consensus       308 G~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~  370 (386)
T PLN03139        308 GHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFP  370 (386)
T ss_pred             CCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999865 59999999999999999999999999999999999999999754

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-66  Score=514.73  Aligned_cols=306  Identities=28%  Similarity=0.451  Sum_probs=276.0

Q ss_pred             eEEEEeCCCChHHHHHHHhc--CcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361            4 IGVLMTTPMSNYLEQELAAR--FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI   81 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      ++|++++++.+...+.|++.  +++.. .. ....+++.+.++++|+++++..+++++++++++|+||||+++|+|+|++
T Consensus         1 m~ili~~~~~~~~~~~l~~~~~~~v~~-~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   78 (526)
T PRK13581          1 MKVLVSDPISPAGLEILKDAPGVEVDV-KT-GLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNV   78 (526)
T ss_pred             CeEEEeCCCCHHHHHHHhccCCeEEEe-CC-CCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccc
Confidence            36899999888888888775  33332 21 2234556667889999998777789999999999999999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHH
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAK  161 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~  161 (313)
                      |+++++++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+.. ..+.+|+||+|||||+|+||+.+|+
T Consensus        79 d~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~-~~g~~l~gktvgIiG~G~IG~~vA~  157 (526)
T PRK13581         79 DVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKK-FMGVELYGKTLGIIGLGRIGSEVAK  157 (526)
T ss_pred             cHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccC-ccccccCCCEEEEECCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997432 3578999999999999999999999


Q ss_pred             HHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccC
Q 021361          162 RVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID  237 (313)
Q Consensus       162 ~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd  237 (313)
                      ++++|||+|++|||+....    .+... .++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|
T Consensus       158 ~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vd  236 (526)
T PRK13581        158 RAKAFGMKVIAYDPYISPERAAQLGVEL-VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIID  236 (526)
T ss_pred             HHHhCCCEEEEECCCCChhHHHhcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeC
Confidence            9999999999999864321    23333 389999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          238 EPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       238 ~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      ++||+++|++|+++||+||||++||++++|||++|||++|||+||+|.+++.++...+++|+.+|++|+++.+.||
T Consensus       237 e~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  312 (526)
T PRK13581        237 EAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVN  312 (526)
T ss_pred             HHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceee
Confidence            9999999999999999999999999877799999999999999999999999999999999999999999998875

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=3.6e-65  Score=477.28  Aligned_cols=277  Identities=21%  Similarity=0.373  Sum_probs=253.6

Q ss_pred             hhHHhccCCceEEEeeCCCCCCHHHhhcCC--CceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHH
Q 021361           37 KFFQENSSAIRAVVGDTKCGADAELIDSLP--TLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLA  114 (313)
Q Consensus        37 ~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~  114 (313)
                      ++..+.++++|+++++...++++++++++|  +||+|++.++|+|++|+++++++||.|+|+|++++++||||+++++|+
T Consensus        37 ~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~  116 (330)
T PRK12480         37 SATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQ  116 (330)
T ss_pred             HHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHH
Confidence            334667899999998777789999999998  899999999999999999999999999999999999999999999999


Q ss_pred             HhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc-ccccCCHHHHH
Q 021361          115 VLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN-YKYYTNIIDLA  193 (313)
Q Consensus       115 ~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-~~~~~~l~~l~  193 (313)
                      +.|++..+++.+++|.|.......+++|+|++|||||+|.||+.+|++|+++|++|++||++...... .....++++++
T Consensus       117 ~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell  196 (330)
T PRK12480        117 LVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAI  196 (330)
T ss_pred             HHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHH
Confidence            99999999999999976422223478999999999999999999999999999999999998754322 23345899999


Q ss_pred             hhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC---------
Q 021361          194 SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV---------  264 (313)
Q Consensus       194 ~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~---------  264 (313)
                      ++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++||+++|++|+++||+||||++||+.         
T Consensus       197 ~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~  276 (330)
T PRK12480        197 KDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKD  276 (330)
T ss_pred             hcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999952         


Q ss_pred             -C----cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          265 -P----EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       265 -~----~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                       +    +|||++|||++|||+|++|.++++++.+.+.+|+.+|++|++..+.||
T Consensus       277 ~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~  330 (330)
T PRK12480        277 IDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN  330 (330)
T ss_pred             cCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence             1    269999999999999999999999999999999999999999999987

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=9.5e-65  Score=475.53  Aligned_cols=312  Identities=19%  Similarity=0.285  Sum_probs=275.1

Q ss_pred             CCceEEEEeCCCChHHHHHHHhcCcEEE-ecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCC--ceEEEEcCCC
Q 021361            1 MEKIGVLMTTPMSNYLEQELAARFTLFK-LWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPT--LEIVASYSVG   77 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G   77 (313)
                      |.|++|+.+.+......+.+.+.+.+.. .+.... .++..+.++++|+++++...++++++++++|+  ||+|++.|+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G   79 (332)
T PRK08605          1 MTKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEAL-TDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAG   79 (332)
T ss_pred             CcEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCC-CHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccc
Confidence            7789999999888788888777665432 222222 23344667899999888778999999999997  9999999999


Q ss_pred             CCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHH
Q 021361           78 LDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGT  157 (313)
Q Consensus        78 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~  157 (313)
                      +|++|+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.......+++|+|++|||||+|.||+
T Consensus        80 ~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~  159 (332)
T PRK08605         80 FDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGL  159 (332)
T ss_pred             cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHH
Confidence            99999999999999999999999999999999999999999999999999998753222347899999999999999999


Q ss_pred             HHHHHH-HhcCCcEEEECCCCccc--ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          158 AIAKRV-EAFGCPISYHSRSEKSD--ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       158 ~~a~~l-~~~g~~V~~~~~~~~~~--~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      .+|++| ++||++|++||++....  .......++++++++||+|++|+|.++.|+++++++.++.||+|++|||+|||.
T Consensus       160 ~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~  239 (332)
T PRK08605        160 AVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS  239 (332)
T ss_pred             HHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence            999999 78999999999986532  122334589999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEccCCCCCCC--CCc------------ccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 021361          235 HIDEPELVSALLEGRLAGAGLDVYENEPE--VPE------------QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV  300 (313)
Q Consensus       235 ~vd~~al~~al~~g~~~ga~lDV~~~EP~--~~~------------~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~  300 (313)
                      ++|+++|.++|++|+++||+||||++||+  +.+            +||++|||++|||+||+|.++.+++...+++|+.
T Consensus       240 ~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~  319 (332)
T PRK08605        240 LVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATL  319 (332)
T ss_pred             ccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999983  211            4999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCC
Q 021361          301 AHFSNKPLLTPVI  313 (313)
Q Consensus       301 ~~~~g~~~~~~v~  313 (313)
                      +|++|++..+.||
T Consensus       320 ~~~~g~~~~~~~~  332 (332)
T PRK08605        320 EVLQTGTTRLRVN  332 (332)
T ss_pred             HHHcCCCCCCCcC
Confidence            9999999999886

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=4.4e-65  Score=458.73  Aligned_cols=299  Identities=26%  Similarity=0.446  Sum_probs=273.8

Q ss_pred             eEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhh-cCCCceEEEEcCCCCCcCC
Q 021361            4 IGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELID-SLPTLEIVASYSVGLDKID   82 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~-~~~~Lk~i~~~~~G~d~id   82 (313)
                      .+||+++++.+...+.|++.+..+.+.. +.+.+++...++++|++++++.+++++++|+ ..-+||+|.+.++|+||+|
T Consensus         7 ~~il~~e~~~~~~~~~l~~~g~~v~~~~-~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD   85 (406)
T KOG0068|consen    7 RKILVAESLDQACIEILKDNGYQVEFKK-NLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD   85 (406)
T ss_pred             ceEEEecccchHHHHHHHhcCceEEEec-cCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence            3699999999999999998874443322 2233577778899999999999999999999 4557999999999999999


Q ss_pred             hhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHH
Q 021361           83 LDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKR  162 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~  162 (313)
                      ++++.++||.|.|+|.+|+.++||+++++++++.|++.+....+++|+|++..+ .|.+|+|||+||+|+|.||+.+|++
T Consensus        86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~-~G~el~GKTLgvlG~GrIGseVA~r  164 (406)
T KOG0068|consen   86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKY-LGWELRGKTLGVLGLGRIGSEVAVR  164 (406)
T ss_pred             hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecce-eeeEEeccEEEEeecccchHHHHHH
Confidence            999999999999999999999999999999999999999999999999996544 7999999999999999999999999


Q ss_pred             HHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361          163 VEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       163 l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      ++.+||+|++||+-....    .+.+ ..+++|++..||+|.+|+|++|+|+++++.+.|++||+|..+||++||++||+
T Consensus       165 ~k~~gm~vI~~dpi~~~~~~~a~gvq-~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe  243 (406)
T KOG0068|consen  165 AKAMGMHVIGYDPITPMALAEAFGVQ-LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDE  243 (406)
T ss_pred             HHhcCceEEeecCCCchHHHHhccce-eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceech
Confidence            999999999999865432    2233 46899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCceEEEccCCCCCCCC---CcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 021361          239 PELVSALLEGRLAGAGLDVYENEPEV---PEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSN  305 (313)
Q Consensus       239 ~al~~al~~g~~~ga~lDV~~~EP~~---~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g  305 (313)
                      .||+++|++|+++|||+|||+.||+.   .+.|.++|||+.|||+|++|.|+..+....+.+++..|.+|
T Consensus       244 ~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~  313 (406)
T KOG0068|consen  244 PALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING  313 (406)
T ss_pred             HHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999977   45899999999999999999999999999999999999999

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=2.1e-61  Score=448.42  Aligned_cols=292  Identities=23%  Similarity=0.359  Sum_probs=248.6

Q ss_pred             EEEEeCCC-ChH-HHHHHHhcCcEEEe--cCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361            5 GVLMTTPM-SNY-LEQELAARFTLFKL--WTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK   80 (313)
Q Consensus         5 ~vl~~~~~-~~~-~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      .+++..+. ..+ +.+.|++.++.++.  +...        ...++|+++++..   +.+.++ .|+||||++.|+|+|+
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~--------~~~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~   69 (312)
T PRK15469          2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKSG--------DNDPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDS   69 (312)
T ss_pred             EEEEeCCccCHHHHHHHHHHHCCCCeEEecCCC--------CCccCeEEEEeCC---ChHHhc-cCCceEEEEcccccch
Confidence            45655544 444 66778876653332  2211        1367898888653   467776 5899999999999999


Q ss_pred             CChhh-----hhcCCcEEEeCCC-CCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCCh
Q 021361           81 IDLDK-----CKDKAVRVTNTPD-VLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGR  154 (313)
Q Consensus        81 id~~~-----~~~~gI~v~n~~~-~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~  154 (313)
                      +|...     +.++||.|+|+++ .++.+||||+++++|++.|++..++..+++|.|...   .+.+++||+|||||+|.
T Consensus        70 i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~---~~~~l~g~tvgIvG~G~  146 (312)
T PRK15469         70 ILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL---PEYHREDFTIGILGAGV  146 (312)
T ss_pred             hhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC---CCCCcCCCEEEEECCCH
Confidence            98322     4568999999864 689999999999999999999999999999999742   34689999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEECCCCccccccc---ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          155 IGTAIAKRVEAFGCPISYHSRSEKSDANYK---YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       155 iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~---~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ||+.+|++|++|||+|++|+++.+...+..   ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|
T Consensus       147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence            999999999999999999998765432222   23589999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021361          232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLT  310 (313)
Q Consensus       232 rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  310 (313)
                      ||++||++||+++|++|++.||++|||++||+++ +|||++|||++|||+||+|.++  ++...+.+|+++|++|+++.|
T Consensus       227 RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~  304 (312)
T PRK15469        227 RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCG  304 (312)
T ss_pred             CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcc
Confidence            9999999999999999999999999999999875 5899999999999999999874  688999999999999999999


Q ss_pred             CCC
Q 021361          311 PVI  313 (313)
Q Consensus       311 ~v~  313 (313)
                      .|+
T Consensus       305 ~V~  307 (312)
T PRK15469        305 QVD  307 (312)
T ss_pred             cCC
Confidence            875

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-60  Score=441.27  Aligned_cols=286  Identities=26%  Similarity=0.359  Sum_probs=244.4

Q ss_pred             EEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChh
Q 021361            5 GVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLD   84 (313)
Q Consensus         5 ~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~   84 (313)
                      .+++..++.+...+.+.+.++.......+        ...++|+++....       +..+|+||||++.++|+|++|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~id~~   66 (303)
T PRK06436          2 NVYVNFPMSKKLLEICRDILDLDDVHWYP--------DYYDAEAILIKGR-------YVPGKKTKMIQSLSAGVDHIDVS   66 (303)
T ss_pred             eEEEEccCCHHHHHHHHhhcccceeEecc--------ccCCCCEEEecCC-------cCCCCCeEEEEECCcccCcccHH
Confidence            45666888888888776544321111111        1356777765332       23468999999999999999999


Q ss_pred             hhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHH
Q 021361           85 KCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVE  164 (313)
Q Consensus        85 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~  164 (313)
                      ++.++||.++|. +.++.+||||+++++|++.|++.++++.+++|.|...   .+++|+||+|||||+|+||+.+|++++
T Consensus        67 ~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~---~~~~L~gktvgIiG~G~IG~~vA~~l~  142 (303)
T PRK06436         67 GIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS---PTKLLYNKSLGILGYGGIGRRVALLAK  142 (303)
T ss_pred             HHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC---CCCCCCCCEEEEECcCHHHHHHHHHHH
Confidence            999888887775 7889999999999999999999999999999999742   357999999999999999999999999


Q ss_pred             hcCCcEEEECCCCccccccc-ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHH
Q 021361          165 AFGCPISYHSRSEKSDANYK-YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVS  243 (313)
Q Consensus       165 ~~g~~V~~~~~~~~~~~~~~-~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~  243 (313)
                      +|||+|++|||+.... +.. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|+++|.+
T Consensus       143 afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~  221 (303)
T PRK06436        143 AFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLN  221 (303)
T ss_pred             HCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHH
Confidence            9999999999975432 222 25689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          244 ALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVG-SDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       244 al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia-~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      +|++|++.||++|||++||++++.  .+|||++|||++ ++|.++.+++...+++|+.+|++|++ .|.|+
T Consensus       222 aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~  289 (303)
T PRK06436        222 FLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVR  289 (303)
T ss_pred             HHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEc
Confidence            999999999999999999976543  689999999986 48899999999999999999999987 56653

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=2.4e-60  Score=448.68  Aligned_cols=277  Identities=22%  Similarity=0.338  Sum_probs=240.5

Q ss_pred             eEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCCh
Q 021361            4 IGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDL   83 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      |+|++.+.+ +...+.|++.+++......+..    .+.++++|++++++.+++++++++ .|+||||+++++|+||+|+
T Consensus         1 mkIl~d~~~-~~~~~~~~~~~ev~~~~~~~~~----~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~   74 (378)
T PRK15438          1 MKILVDENM-PYARELFSRLGEVKAVPGRPIP----VAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDE   74 (378)
T ss_pred             CEEEEeCCc-chHHHHHhhcCcEEEeCCCCCC----HHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCH
Confidence            368887655 4555666655565543222222    234688999999887899999996 6999999999999999999


Q ss_pred             hhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHH
Q 021361           84 DKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l  163 (313)
                      +++.++||.|+|+||+++.+||||+++++|++.|+.                   +.+|+||+|||||+|+||+.+|++|
T Consensus        75 ~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-------------------g~~L~gktvGIIG~G~IG~~vA~~l  135 (378)
T PRK15438         75 AWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-------------------GFSLHDRTVGIVGVGNVGRRLQARL  135 (378)
T ss_pred             HHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-------------------CCCcCCCEEEEECcCHHHHHHHHHH
Confidence            999999999999999999999999999999998851                   3479999999999999999999999


Q ss_pred             HhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChH----hhhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          164 EAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEE----THHIVNRKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       164 ~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~----t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      ++|||+|.+|||..........+.++++++++||+|++|+|+|++    |.++++++.|++||+|++|||+|||++||++
T Consensus       136 ~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~  215 (378)
T PRK15438        136 EALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNT  215 (378)
T ss_pred             HHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHH
Confidence            999999999998543221112356899999999999999999996    9999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361          240 ELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP  307 (313)
Q Consensus       240 al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  307 (313)
                      ||+++|++|++.||+||||++||.++.+|+..++ ++||||||+|.++..++...+.+|+.+|+ |.+
T Consensus       216 AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~  281 (378)
T PRK15438        216 ALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE  281 (378)
T ss_pred             HHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc
Confidence            9999999999999999999999987778988776 99999999999999999999999999999 544

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=2.4e-60  Score=437.16  Aligned_cols=267  Identities=50%  Similarity=0.855  Sum_probs=244.6

Q ss_pred             eEEEeeCCCCCCHHHhhcC-CCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHH
Q 021361           47 RAVVGDTKCGADAELIDSL-PTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEF  125 (313)
Q Consensus        47 ~~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~  125 (313)
                      .++.+......+.+++.+. |+||+|+++|+|+||+|+++|++|||+|+|+|+.+.++|||++++++|.+.|++..++++
T Consensus        63 ~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~  142 (336)
T KOG0069|consen   63 IAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEM  142 (336)
T ss_pred             eeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            3444445667778888775 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCc-CCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-ccc---ccCCHHHHHhhCCeeE
Q 021361          126 VKSGKWK-NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-NYK---YYTNIIDLASNCQILI  200 (313)
Q Consensus       126 ~~~~~w~-~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~~~---~~~~l~~l~~~aDvv~  200 (313)
                      +++|.|. ...++.|..+.||+|||+|+|+||+.+|++|++||+.+.|++|+..... ..+   ...++++++++||+|+
T Consensus       143 ~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~iv  222 (336)
T KOG0069|consen  143 VRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIV  222 (336)
T ss_pred             hhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEE
Confidence            9999994 2335568899999999999999999999999999988999999775432 112   2469999999999999


Q ss_pred             EecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCC
Q 021361          201 VACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHV  280 (313)
Q Consensus       201 l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHi  280 (313)
                      +|+|+|++|++++|++.|.+||+|+++||+|||+++|++++.++|++|++.+|++|||++||..+++|+.++|+++||||
T Consensus       223 v~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHi  302 (336)
T KOG0069|consen  223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHI  302 (336)
T ss_pred             EecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999767899999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          281 GSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       281 a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      |+.|.+++++|...++.|+.+++.|+|+.++++
T Consensus       303 gs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~  335 (336)
T KOG0069|consen  303 GSATLETREKMAEIVLNNLLAFFSGKPLLTPVL  335 (336)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence            999999999999999999999999999988764

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=1.5e-59  Score=444.64  Aligned_cols=279  Identities=20%  Similarity=0.375  Sum_probs=242.3

Q ss_pred             eEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCCh
Q 021361            4 IGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDL   83 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      |+|++.+.+ |...+.+++..++... ...   +...+.++++|++++++.+++++++++. |+||||+++++|+||+|+
T Consensus         1 mkI~~d~~~-p~~~~~~~~~~~v~~~-~~~---~~~~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D~iD~   74 (381)
T PRK00257          1 MKIVADENI-PLLDAFFAGFGEIRRL-PGR---AFDRAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTDHLDL   74 (381)
T ss_pred             CEEEEecCc-hhHHHHHhhCCcEEEc-CCc---ccCHHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccccccCH
Confidence            577776655 4444445544444332 211   1223456899999988888999999984 899999999999999999


Q ss_pred             hhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHH
Q 021361           84 DKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l  163 (313)
                      +++.++||.|+|+||+++.+||||+++++|++.|+                   .+.+|+||+|||||+|+||+.+|+++
T Consensus        75 ~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-------------------~g~~l~gktvGIIG~G~IG~~va~~l  135 (381)
T PRK00257         75 DYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-------------------EGVDLAERTYGVVGAGHVGGRLVRVL  135 (381)
T ss_pred             HHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-------------------cCCCcCcCEEEEECCCHHHHHHHHHH
Confidence            99999999999999999999999999999999874                   24579999999999999999999999


Q ss_pred             HhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCCh----HhhhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          164 EAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTE----ETHHIVNRKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       164 ~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~----~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      ++|||+|++||+......+...+.++++++++||+|++|+|+|+    .|+++|+++.|++||+|++|||+|||++||++
T Consensus       136 ~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~  215 (381)
T PRK00257        136 RGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQ  215 (381)
T ss_pred             HHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHH
Confidence            99999999999865432222335689999999999999999999    59999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 021361          240 ELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPL  308 (313)
Q Consensus       240 al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~  308 (313)
                      ||+++|++|++.+|+||||++||.++++||.. |+++|||+||+|.++..++...+.+|+.+|+.+.+.
T Consensus       216 AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~  283 (381)
T PRK00257        216 ALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPAR  283 (381)
T ss_pred             HHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            99999999999999999999999777789986 999999999999999999999999999999998753

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=3.9e-48  Score=333.09  Aligned_cols=173  Identities=37%  Similarity=0.657  Sum_probs=152.1

Q ss_pred             HHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----ccc
Q 021361          109 VGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----NYK  184 (313)
Q Consensus       109 l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----~~~  184 (313)
                      ++++|++.|++..+++.++++.|.......+++++|++|||||+|.||+.+|+++++|||+|++|||+.+...    ...
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence            6899999999999999999999932223457899999999999999999999999999999999999987543    112


Q ss_pred             ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC
Q 021361          185 YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV  264 (313)
Q Consensus       185 ~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~  264 (313)
                      ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++|||++||++
T Consensus        81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~  160 (178)
T PF02826_consen   81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP  160 (178)
T ss_dssp             EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred             eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             Cc-ccCCCCcEEEcCCCC
Q 021361          265 PE-QMLGLNNVVLLPHVG  281 (313)
Q Consensus       265 ~~-~l~~~pnvi~TPHia  281 (313)
                      +. |||++||+++|||+|
T Consensus       161 ~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  161 ADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTHHHHTSTTEEEESS-T
T ss_pred             CCChHHcCCCEEEeCccC
Confidence            65 999999999999987

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.97  E-value=5.1e-32  Score=247.23  Aligned_cols=254  Identities=22%  Similarity=0.365  Sum_probs=227.8

Q ss_pred             EEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHc
Q 021361           49 VVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKS  128 (313)
Q Consensus        49 i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~  128 (313)
                      -+.+.+..++++-+++++.||++.+.+.|+|++|+.++.+.||.|||.|+...+.+|+-++.++|.++|+..+..+..++
T Consensus        77 am~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~e  156 (435)
T KOG0067|consen   77 AMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALRE  156 (435)
T ss_pred             cceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcc
Confidence            44456678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCcc------cccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc----cccccccCCHHHHHhhCCe
Q 021361          129 GKWKNGHFE------LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS----DANYKYYTNIIDLASNCQI  198 (313)
Q Consensus       129 ~~w~~~~~~------~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~----~~~~~~~~~l~~l~~~aDv  198 (313)
                      |.|.+....      .....+|.+.|++|+|..|+.++.++++||+.|+.||+....    ..+.....++++++.++|.
T Consensus       157 g~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~  236 (435)
T KOG0067|consen  157 GTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDC  236 (435)
T ss_pred             cceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccc
Confidence            998642211      134679999999999999999999999999999999997643    2445556679999999999


Q ss_pred             eEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC--CCcccCCCCcEEE
Q 021361          199 LIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE--VPEQMLGLNNVVL  276 (313)
Q Consensus       199 v~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~--~~~~l~~~pnvi~  276 (313)
                      +++|+.+++++.++|+.-..++|+.|++++|++||.++|+++|.++|++|++.+++       |.  ...||.+-||.++
T Consensus       237 ~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic  309 (435)
T KOG0067|consen  237 VSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLIC  309 (435)
T ss_pred             eeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999887       32  2347999999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021361          277 LPHVGSDTEETSKAMADLVIENLVAHFSNKPLL  309 (313)
Q Consensus       277 TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~  309 (313)
                      |||.++++..+..++.+.+...+++-..|.-+.
T Consensus       310 ~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~  342 (435)
T KOG0067|consen  310 TPHTAWYSEAASVELREVAALEIRRAITGRIPD  342 (435)
T ss_pred             CcccchhhHHHHHHHHHHHhhhhhhccCCCCch
Confidence            999999999999999999999999988887543

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.90  E-value=5e-23  Score=168.68  Aligned_cols=101  Identities=25%  Similarity=0.410  Sum_probs=86.5

Q ss_pred             EEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChhh
Q 021361            6 VLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDK   85 (313)
Q Consensus         6 vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~   85 (313)
                      ||++++++++.++.|++.+++.. .. ....+++.+.++++|+++++..+++++++++++|+||||++.|+|+|++|+++
T Consensus         1 ili~~~~~~~~~~~l~~~~~v~~-~~-~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~   78 (133)
T PF00389_consen    1 ILITDPLPDEEIERLEEGFEVEF-CD-SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLEA   78 (133)
T ss_dssp             EEESSS-SHHHHHHHHHTSEEEE-ES-SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HHH
T ss_pred             eEEeccCCHHHHHHHHCCceEEE-eC-CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHHH
Confidence            78999999999999999775443 33 33456677788999999998877799999999999999999999999999999


Q ss_pred             hhcCCcEEEeCCCCCcHHHHHHH
Q 021361           86 CKDKAVRVTNTPDVLTDDVADLA  108 (313)
Q Consensus        86 ~~~~gI~v~n~~~~~~~~vAE~~  108 (313)
                      ++++||.|+|+||+++.+||||+
T Consensus        79 a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   79 AKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             HHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             HhhCeEEEEEeCCcCCcchhccc
Confidence            99999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.86  E-value=2.6e-21  Score=186.48  Aligned_cols=167  Identities=19%  Similarity=0.323  Sum_probs=137.3

Q ss_pred             EcCCCCCcC-ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEc
Q 021361           73 SYSVGLDKI-DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVG  151 (313)
Q Consensus        73 ~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG  151 (313)
                      -+++|+..+ .++.....+|+|+|+++.+..+++|+++++++++..++      +|.+         +..+.||+++|+|
T Consensus       197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~------~R~~---------~~~LaGKtVgVIG  261 (476)
T PTZ00075        197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI------FRAT---------DVMIAGKTVVVCG  261 (476)
T ss_pred             cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHH------HHhc---------CCCcCCCEEEEEC
Confidence            368888776 22333446899999999999999999999999988443      3333         3469999999999


Q ss_pred             CChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcE
Q 021361          152 LGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGI  226 (313)
Q Consensus       152 ~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~  226 (313)
                      +|.||+.+|+++++||++|+++++.+...     .++. ..++++++++||+|++|+    .+.++|+++.|+.||+|++
T Consensus       262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~-~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAi  336 (476)
T PTZ00075        262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ-VVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAI  336 (476)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce-eccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcE
Confidence            99999999999999999999997765432     2332 357999999999999985    4788999999999999999


Q ss_pred             EEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCc
Q 021361          227 LINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE  266 (313)
Q Consensus       227 ~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~  266 (313)
                      +||+||+   |++.+.++|+++.    ++||++.||....
T Consensus       337 LINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~  369 (476)
T PTZ00075        337 VGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDR  369 (476)
T ss_pred             EEEcCCC---chHHhHHHHHhcC----CceeecccCCCCe
Confidence            9999999   7888889988754    6899999996543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.82  E-value=3.6e-20  Score=170.52  Aligned_cols=176  Identities=17%  Similarity=0.226  Sum_probs=139.0

Q ss_pred             ccCCceEEEee----------------CCCCCCHHHhhcCCCceEEEEcCCCCCcCChh-hhhcCCcEEE------eCCC
Q 021361           42 NSSAIRAVVGD----------------TKCGADAELIDSLPTLEIVASYSVGLDKIDLD-KCKDKAVRVT------NTPD   98 (313)
Q Consensus        42 ~~~~~~~i~~~----------------~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~-~~~~~gI~v~------n~~~   98 (313)
                      .++++|++++.                ...++++++++.+|   .++...+|+++.|++ +++++||.|+      |.+.
T Consensus        51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~  127 (287)
T TIGR02853        51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI  127 (287)
T ss_pred             hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence            35677877762                23456789999988   366778889999888 9999999999      8888


Q ss_pred             CCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361           99 VLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus        99 ~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+.++||.++.+++..                      .+.+++|++++|+|+|.||+.+|+.|+++|++|++++|+.+
T Consensus       128 ~n~~~~Ae~ai~~al~~----------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       128 YNSIPTAEGAIMMAIEH----------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             EccHhHHHHHHHHHHHh----------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            99999999999877742                      12368899999999999999999999999999999999875


Q ss_pred             cc-----cccc--ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC-ccCHHHHHHHHHhCCc
Q 021361          179 SD-----ANYK--YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA-HIDEPELVSALLEGRL  250 (313)
Q Consensus       179 ~~-----~~~~--~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~-~vd~~al~~al~~g~~  250 (313)
                      ..     .+..  ...+++++++++|+|++|+|.+     +++++.++.|++++++||++..+ -+|.    ++.++..+
T Consensus       186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G~  256 (287)
T TIGR02853       186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRGI  256 (287)
T ss_pred             HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCCC
Confidence            32     1221  1245778899999999999863     67888999999999999999743 3444    33444444


Q ss_pred             e
Q 021361          251 A  251 (313)
Q Consensus       251 ~  251 (313)
                      .
T Consensus       257 ~  257 (287)
T TIGR02853       257 K  257 (287)
T ss_pred             E
Confidence            4

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.65  E-value=2.1e-15  Score=139.68  Aligned_cols=163  Identities=13%  Similarity=0.251  Sum_probs=128.9

Q ss_pred             hccCCceEEEeeCC----------------CCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCC-----
Q 021361           41 ENSSAIRAVVGDTK----------------CGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDV-----   99 (313)
Q Consensus        41 ~~~~~~~~i~~~~~----------------~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~-----   99 (313)
                      +.++++|+++..-.                ..++++.++.+|++..+. .|.+.++++ +.+.++||.+.+..+.     
T Consensus        51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~  128 (296)
T PRK08306         51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI  128 (296)
T ss_pred             HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence            44678999987411                124688999999997555 588899987 7889999999998764     


Q ss_pred             -CcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          100 -LTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       100 -~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                       ++.++||.++.+++..                      .+..++|++++|||+|.+|+.+++.|+++|++|++++|++.
T Consensus       129 ~ns~~~aegav~~a~~~----------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        129 LNSIPTAEGAIMMAIEH----------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             hccHhHHHHHHHHHHHh----------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence             7889999977754321                      12357899999999999999999999999999999999865


Q ss_pred             cc-----ccccc--cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          179 SD-----ANYKY--YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       179 ~~-----~~~~~--~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ..     .++..  ..++.+.++++|+|+.++|.     .+++++.++.|++++++||++.
T Consensus       187 ~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        187 HLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             HHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence            32     22221  24677889999999999874     4678889999999999999985

>PLN02494 adenosylhomocysteinase

Probab=99.60  E-value=2.3e-15  Score=145.15  Aligned_cols=116  Identities=19%  Similarity=0.273  Sum_probs=101.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      .+.|++++|+|+|.||+.+|++++++|++|+++++.+...     .++. ..+++++++++|+|+.+    ..++++++.
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~  325 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV  325 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence            4789999999999999999999999999999998876432     2233 24789999999999973    367889999


Q ss_pred             HHHhhcCCCcEEEEcCC-CCccCHHHHHHH--HHhCCceEEEccCCCCCC
Q 021361          216 KVIDALGPSGILINIGR-GAHIDEPELVSA--LLEGRLAGAGLDVYENEP  262 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~r-g~~vd~~al~~a--l~~g~~~ga~lDV~~~EP  262 (313)
                      +.|+.||+|++++|+|| +..||+++|.++  ++++.+. +.+|+|+.|-
T Consensus       326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            99999999999999999 689999999998  8999988 9999998764

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.51  E-value=3.9e-14  Score=130.58  Aligned_cols=88  Identities=20%  Similarity=0.335  Sum_probs=75.6

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      ..|+||+|||||+|+||+++|++|+.+|++|+++++.....     .+.. ..++++++++||+|++|+|+ ++++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            46899999999999999999999999999999997654331     1333 34899999999999999997 67799999


Q ss_pred             HHHHhhcCCCcEEEE
Q 021361          215 RKVIDALGPSGILIN  229 (313)
Q Consensus       215 ~~~l~~mk~ga~~in  229 (313)
                      .+.++.||+|++++-
T Consensus        90 ~eil~~MK~GaiL~f  104 (335)
T PRK13403         90 AEVEENLREGQMLLF  104 (335)
T ss_pred             HHHHhcCCCCCEEEE
Confidence            999999999998764

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.51  E-value=5.4e-14  Score=134.48  Aligned_cols=115  Identities=22%  Similarity=0.306  Sum_probs=98.7

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      .+.|++|+|+|+|.||+.+|++++++|++|+++++.+...     .++. ..+++++++.+|+|+.++    .+.++++.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~-v~~leeal~~aDVVItaT----G~~~vI~~  266 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKIGDIFITAT----GNKDVIRG  266 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCE-eCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence            4789999999999999999999999999999998776432     2332 346788999999998765    45778899


Q ss_pred             HHHhhcCCCcEEEEcCCCCc-cCHHHHHHHHHhCCceEEEccCCCC
Q 021361          216 KVIDALGPSGILINIGRGAH-IDEPELVSALLEGRLAGAGLDVYEN  260 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~-vd~~al~~al~~g~~~ga~lDV~~~  260 (313)
                      +.|..||+|++++|+||+++ +|.++|.+++.+.+..+..+|+|.-
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            99999999999999999998 9999999998887777788998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.49  E-value=2.5e-13  Score=123.97  Aligned_cols=118  Identities=18%  Similarity=0.267  Sum_probs=103.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RK  216 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~  216 (313)
                      .+|||||+|.||..||++|...|+.|.+|||++.+.      .+.....+..++.+++|+|++|+|.+++.+..+.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            379999999999999999999999999999998762      3566678899999999999999999999999774  57


Q ss_pred             HHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361          217 VIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP  262 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP  262 (313)
                      .++.+|+|++|||++..++.....+.+.++++.+...---|....+
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~  126 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP  126 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence            8999999999999999999999999999999998844333566655

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.48  E-value=8e-14  Score=118.10  Aligned_cols=111  Identities=19%  Similarity=0.348  Sum_probs=89.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC-HHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN-RKVI  218 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~-~~~l  218 (313)
                      ++|||||+|.||+.+|++|...|++|++|||++++.     .+...+.++.|++++||+|++++|..+.++.++. .+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            589999999999999999999999999999987543     3456678999999999999999999888887653 2377


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV  257 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV  257 (313)
                      +.+++|.++||++...+-....+.+.+.+..+.  .+|.
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA  118 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence            889999999999999999999999999887766  5554

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.38  E-value=1.2e-12  Score=125.99  Aligned_cols=152  Identities=19%  Similarity=0.294  Sum_probs=113.8

Q ss_pred             EEcCCCCCcC-ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEE
Q 021361           72 ASYSVGLDKI-DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIV  150 (313)
Q Consensus        72 ~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgii  150 (313)
                      =-+++|+..+ ......+.+++|.|++..+.....|...+.--+....+.+      .         .+..+.|++|+|+
T Consensus       154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r------a---------t~~~l~Gk~VlVi  218 (425)
T PRK05476        154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKR------A---------TNVLIAGKVVVVA  218 (425)
T ss_pred             ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHHH------h---------ccCCCCCCEEEEE
Confidence            3468888776 3333345789999999988877666444433332222110      0         1234789999999


Q ss_pred             cCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCc
Q 021361          151 GLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSG  225 (313)
Q Consensus       151 G~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga  225 (313)
                      |+|.||+.+|+.++++|++|+++++.+...     .++. ..+++++++.+|+|+.++    .+.++|+.+.|+.||+|+
T Consensus       219 G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~Ga  293 (425)
T PRK05476        219 GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGA  293 (425)
T ss_pred             CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999877542     2233 347899999999998865    456789999999999999


Q ss_pred             EEEEcCCCCc-cCHHHHHH
Q 021361          226 ILINIGRGAH-IDEPELVS  243 (313)
Q Consensus       226 ~~in~~rg~~-vd~~al~~  243 (313)
                      +++|+|+... +|.++|.+
T Consensus       294 iliNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        294 ILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             EEEEcCCCCCccChHHHhh
Confidence            9999999876 78887765

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.34  E-value=5.1e-12  Score=116.77  Aligned_cols=106  Identities=13%  Similarity=0.285  Sum_probs=90.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhcc-C-HHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIV-N-RKVI  218 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i-~-~~~l  218 (313)
                      +|||||+|.||..+|+.|...|++|.+|||+++..     .+.....+..+++++||+|++|+|.++.++.++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            48999999999999999999999999999987542     233345688899999999999999888887765 3 3467


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ..+++|.++||+++..+.+.+++.+.+++..+.
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            788999999999999999999999999987665

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.32  E-value=7.4e-12  Score=115.86  Aligned_cols=118  Identities=19%  Similarity=0.332  Sum_probs=96.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKV  217 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~  217 (313)
                      ++|||||+|.||+.+|+.|...|++|.+|||++...     .+.....++++++++||+|++++|.+..++.++.  .+.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            479999999999999999999999999999987542     2333456899999999999999998888887763  346


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP  262 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP  262 (313)
                      ++.+++|.++||+++..+...+++.+.+.+..+...---|+..+|
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            788999999999999999888899999988766544344555544

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.29  E-value=1.3e-11  Score=114.42  Aligned_cols=111  Identities=13%  Similarity=0.249  Sum_probs=94.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKV  217 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~  217 (313)
                      ++|||||+|.||..+|+.|...|++|.+|||++++.     .+.....+..+++++||+|++|+|.....+..+.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            379999999999999999999999999999987643     2344567889999999999999998877777664  346


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV  257 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV  257 (313)
                      +..+++|.++||++++.+...+.+.+.+.+..+.  .+|.
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda  119 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV  119 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence            7789999999999999999999999999998877  4553

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.28  E-value=2.3e-11  Score=112.97  Aligned_cols=108  Identities=19%  Similarity=0.315  Sum_probs=92.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhh---CCeeEEecCCChHhhhccCHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASN---CQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~---aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +|||||+|.||..+|+.|...|++|.+|||+++..     .+.....++++++++   +|+|++++|..+.++.+++ +.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i   80 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL   80 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH
Confidence            69999999999999999999999999999986542     234456789999877   6999999998878888774 57


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEcc
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLD  256 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lD  256 (313)
                      +..+++|.++||++++.+.+...+.+.+.+..+.  .+|
T Consensus        81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            7889999999999999999999999999888765  466

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.28  E-value=2.3e-11  Score=119.35  Aligned_cols=116  Identities=17%  Similarity=0.253  Sum_probs=100.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc---------ccc---ccCCHHHHHhh---CCeeEEecCCChHhh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA---------NYK---YYTNIIDLASN---CQILIVACSLTEETH  210 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------~~~---~~~~l~~l~~~---aDvv~l~~p~~~~t~  210 (313)
                      +|||||+|.||+.||+.|...|++|.+|||++++..         +..   .+.+++++++.   +|+|++|+|..+.++
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~   87 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD   87 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence            699999999999999999999999999999875421         222   45689999886   999999999999999


Q ss_pred             hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361          211 HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP  262 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP  262 (313)
                      .++ ...+..+++|.++||+|....-+...+.+.+++..+.....=|+..++
T Consensus        88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            888 468889999999999999999999999999999988866666776666

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.28  E-value=1.3e-11  Score=103.43  Aligned_cols=99  Identities=18%  Similarity=0.361  Sum_probs=72.4

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      ..+.||++.|+|||.+|+.+|+.|+++|++|.+++..+-..     .+++ ..+++++++++|+++.++    ..+.++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaT----G~~~vi~   93 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTAT----GNKDVIT   93 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-S----SSSSSB-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECC----CCccccC
Confidence            35899999999999999999999999999999999877542     3444 357999999999999876    4477889


Q ss_pred             HHHHhhcCCCcEEEEcCCCCc-cCHHHHHH
Q 021361          215 RKVIDALGPSGILINIGRGAH-IDEPELVS  243 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg~~-vd~~al~~  243 (313)
                      .+.|.+||+|+++.|++.-.. +|.+.|.+
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            999999999999999987544 66655544

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.21  E-value=8.1e-11  Score=109.34  Aligned_cols=109  Identities=21%  Similarity=0.305  Sum_probs=92.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhh---CCeeEEecCCChHhhhccCHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASN---CQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~---aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +|||||+|.||+.+|+.|...|++|.+|||+++..     .+.....+++++++.   +|+|++++|..+.++.+++ ..
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~l   80 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-EL   80 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-HH
Confidence            69999999999999999999999999999987542     234455689998876   6999999998877777764 57


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV  257 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV  257 (313)
                      +..+++|.++||++++.......+.+.+++..+.  .+|.
T Consensus        81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da  118 (301)
T PRK09599         81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV  118 (301)
T ss_pred             HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence            7889999999999999999999999999998877  4564

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.15  E-value=1.1e-10  Score=105.57  Aligned_cols=113  Identities=15%  Similarity=0.256  Sum_probs=99.2

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--  214 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--  214 (313)
                      -+.++||+||+|.||..|+..|...|++|++|||+.++.     .++....++.|+.+.||+|+.++|...+.+.++.  
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~  112 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK  112 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence            357899999999999999999999999999999988754     4566788999999999999999999999988774  


Q ss_pred             HHHHhhcCCCcEE-EEcCCCCccCHHHHHHHHHhCCceEEEcc
Q 021361          215 RKVIDALGPSGIL-INIGRGAHIDEPELVSALLEGRLAGAGLD  256 (313)
Q Consensus       215 ~~~l~~mk~ga~~-in~~rg~~vd~~al~~al~~g~~~ga~lD  256 (313)
                      ...|+..++|... |+.+.-+.--...+.+++...+..  .+|
T Consensus       113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD  153 (327)
T KOG0409|consen  113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD  153 (327)
T ss_pred             CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence            4578888898877 999999999999999999998777  455

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.13  E-value=1.4e-10  Score=108.30  Aligned_cols=91  Identities=18%  Similarity=0.293  Sum_probs=73.9

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      ..|+|++|||||+|+||+++|+.|+.+|++|.++++...+.      .+.. ..+.++++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            45899999999999999999999999999998877653321      2333 34899999999999999997655 6677


Q ss_pred             CHHHHhhcCCCcEEEEcCCC
Q 021361          214 NRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg  233 (313)
                      +++.+..|++|+++ -++.|
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCC
Confidence            67788899999988 55556

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.11  E-value=3.8e-10  Score=104.48  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=91.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHHHh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKVID  219 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~l~  219 (313)
                      +|||||+|.||..+|+.|...|++|.+|+++++..    .+.....+..++.++||+|++|+|..+..+..+.  ...++
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~   81 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK   81 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence            69999999999999999999999999999876421    2344457899999999999999998888887663  23577


Q ss_pred             hcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361          220 ALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV  257 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV  257 (313)
                      .+++|.++|+++...+-....+.+.+.+....  .+|.
T Consensus        82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda  117 (292)
T PRK15059         82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA  117 (292)
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence            78999999999999999999999999887665  4553

>PLN02712 arogenate dehydrogenase

Probab=99.09  E-value=3e-10  Score=115.79  Aligned_cols=109  Identities=20%  Similarity=0.302  Sum_probs=86.0

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHh-hCCeeEEecCCChHhhhcc
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLAS-NCQILIVACSLTEETHHIV  213 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~-~aDvv~l~~p~~~~t~~~i  213 (313)
                      ++++.+++|||||+|.||+.+|+.|+.+|++|.+|+++....    .+.....++++++. .+|+|++|+|. ..+..++
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi  442 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL  442 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence            567889999999999999999999999999999999985421    23334567888876 59999999994 5777777


Q ss_pred             CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      .+-....||+|++++|++.++-...+.+.+.+..+
T Consensus       443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~  477 (667)
T PLN02712        443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD  477 (667)
T ss_pred             HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence            76544569999999999999855556666555443

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.09  E-value=4.8e-10  Score=109.88  Aligned_cols=117  Identities=20%  Similarity=0.307  Sum_probs=98.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc---------c--ccccCCHHHHHh---hCCeeEEecCCChHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA---------N--YKYYTNIIDLAS---NCQILIVACSLTEETH  210 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------~--~~~~~~l~~l~~---~aDvv~l~~p~~~~t~  210 (313)
                      .+|||||+|.||+.+|+.|...|++|.+|||+++...         +  ...+.+++++++   ++|+|++++|....++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            3799999999999999999999999999999876421         2  223578999987   4899999999998999


Q ss_pred             hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361          211 HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP  262 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP  262 (313)
                      .+++ +.+..+++|.++||++.+...|...+.+.+.+..+.....=|...++
T Consensus        82 ~vi~-~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         82 ETID-NLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             HHHH-HHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            8884 57888999999999999999999999999999988844444565554

>PLN02256 arogenate dehydrogenase

Probab=99.09  E-value=1.7e-09  Score=100.50  Aligned_cols=105  Identities=21%  Similarity=0.330  Sum_probs=80.7

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHH-hhCCeeEEecCCChHhhhccCHH
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLA-SNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~-~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      -++++|||||+|.||+.+|+.|+..|++|++|+++....    .+.....+.++++ .++|+|++|+|.. .+..++.+-
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l  112 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL  112 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence            467899999999999999999999999999999886321    2233346788876 4799999999953 566666543


Q ss_pred             HHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          217 VIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      ....+++++++++++..+-...+++.+.+..
T Consensus       113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256        113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             hhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            2566899999999999776666666666544

>PLN02858 fructose-bisphosphate aldolase

Probab=99.07  E-value=4.9e-10  Score=121.96  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=98.1

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhcc--CH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIV--NR  215 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i--~~  215 (313)
                      +.++|||||+|.||..||+.|...|++|.+|||++...     .+...+.++.++.++||+|++|+|..+.++.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            35689999999999999999999999999999987643     345567899999999999999999999988876  35


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCC--ceEEEccC
Q 021361          216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGR--LAGAGLDV  257 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~--~~ga~lDV  257 (313)
                      ..++.+++|.++|+++...+-....+.+.+.+..  +.  .+|.
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa  124 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA  124 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence            6788899999999999999999999999998876  54  4553

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.05  E-value=5.9e-10  Score=107.21  Aligned_cols=99  Identities=17%  Similarity=0.299  Sum_probs=81.7

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      ..+.|++|+|+|+|.||+.+++.++.+|++|+++++.+.+.     .++. ..++++.++.+|+|+.+..    +.+.++
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~atG----~~~~i~  272 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTTG----NKDIIT  272 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECCC----CHHHHH
Confidence            34789999999999999999999999999999998876542     2332 2357788899999998763    456788


Q ss_pred             HHHHhhcCCCcEEEEcCCCCc-cCHHHHHH
Q 021361          215 RKVIDALGPSGILINIGRGAH-IDEPELVS  243 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg~~-vd~~al~~  243 (313)
                      .+.+..||+|++++|+|++.. +|..+|..
T Consensus       273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            888999999999999999876 88877764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.04  E-value=1.9e-09  Score=100.04  Aligned_cols=104  Identities=19%  Similarity=0.268  Sum_probs=86.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHH---hhCCeeEEecCCChHhhhccCHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLA---SNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~---~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +|||||+|.||..+|+.|...|++|.+|||+++..     .+.....+++++.   .++|+|++++|.. .++.+++ +.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~-~l   79 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLE-EL   79 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHH-HH
Confidence            79999999999999999999999999999987542     1222335666654   4689999999977 7777774 57


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ...+++|.++||++.+...+...+.+.+.+..+.
T Consensus        80 ~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~  113 (298)
T TIGR00872        80 APTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH  113 (298)
T ss_pred             HhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence            7889999999999999999999999999887776

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02858 fructose-bisphosphate aldolase

Probab=99.02  E-value=1.9e-09  Score=117.45  Aligned_cols=112  Identities=13%  Similarity=0.141  Sum_probs=95.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhcc--CH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIV--NR  215 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i--~~  215 (313)
                      ..++|||||+|.||..||+.|...|++|.+|||++...     .+.....++.+++++||+|++|+|....++.++  ..
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            35889999999999999999999999999999987542     233446789999999999999999988888877  34


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh--CCceEEEcc
Q 021361          216 KVIDALGPSGILINIGRGAHIDEPELVSALLE--GRLAGAGLD  256 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~--g~~~ga~lD  256 (313)
                      ..++.+++|.++||++...+-..+.+.+.+.+  ..+.  .+|
T Consensus       403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lD  443 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVD  443 (1378)
T ss_pred             hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEE
Confidence            57888999999999999999999999999988  5555  455

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.01  E-value=1.9e-09  Score=105.63  Aligned_cols=116  Identities=16%  Similarity=0.251  Sum_probs=94.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc--------c--ccccCCHHHHHh---hCCeeEEecCCChHhhhc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA--------N--YKYYTNIIDLAS---NCQILIVACSLTEETHHI  212 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~--~~~~~~l~~l~~---~aDvv~l~~p~~~~t~~~  212 (313)
                      .|||||+|.||+.||+.|...|++|.+|||+++...        +  .....+++++++   ++|+|++++|..+.++.+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            389999999999999999999999999999875421        1  223457788774   689999999988888888


Q ss_pred             cCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361          213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP  262 (313)
Q Consensus       213 i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP  262 (313)
                      ++ +.+..+++|.++||++.+..-+...+.+.+.+..+.....=|...++
T Consensus        81 i~-~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~  129 (467)
T TIGR00873        81 IN-QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE  129 (467)
T ss_pred             HH-HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence            74 57788999999999999999999999999988888744444555443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.99  E-value=1.7e-09  Score=99.94  Aligned_cols=106  Identities=13%  Similarity=0.166  Sum_probs=87.9

Q ss_pred             EEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHHHhhc
Q 021361          149 IVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKVIDAL  221 (313)
Q Consensus       149 iiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~l~~m  221 (313)
                      |||+|.||..+|+.|...|++|.+|||+.+..     .+.....++.+++++||+|++|+|....++.++.  ...+..+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999987542     2344456899999999999999998777777763  4567789


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEcc
Q 021361          222 GPSGILINIGRGAHIDEPELVSALLEGRLAGAGLD  256 (313)
Q Consensus       222 k~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lD  256 (313)
                      ++|.++||++...+-....+.+.+.+..+.  .+|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            999999999988877778888888876665  455

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.99  E-value=5.6e-09  Score=96.71  Aligned_cols=100  Identities=23%  Similarity=0.250  Sum_probs=76.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c------------ccccCCHHHHHhhC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N------------YKYYTNIIDLASNC  196 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~------------~~~~~~l~~l~~~a  196 (313)
                      ++|||||+|.||..+|+.+...|++|++||++.+...                +            .....+..+.+++|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            6899999999999999999999999999999874321                0            01122333568999


Q ss_pred             CeeEEecCCChHhhhccCHHHHhhcCCCcEEE-EcCCCCccCHHHHHHHHHh
Q 021361          197 QILIVACSLTEETHHIVNRKVIDALGPSGILI-NIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~i-n~~rg~~vd~~al~~al~~  247 (313)
                      |+|+.|+|.+++.+..+-++..+.++++++|+ |+|.-   ....+.+.+..
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~  133 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR  133 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence            99999999999988877777777899999886 66655   44556665543

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.92  E-value=1.5e-08  Score=93.47  Aligned_cols=110  Identities=14%  Similarity=0.134  Sum_probs=80.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc-----------------------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN-----------------------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----------------------------~~~~~~l~~l~~~  195 (313)
                      ++|+|||.|.||..+|..|...|++|++||++++....                             .....++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            58999999999999999999999999999998643110                             1124578889999


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEE-EEcCCCCccCHHHHHHHHHhCCceEEEccCC
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGIL-INIGRGAHIDEPELVSALLEGRLAGAGLDVY  258 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~-in~~rg~~vd~~al~~al~~g~~~ga~lDV~  258 (313)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.   .+.+.+.++. .-...++..+
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEEecC
Confidence            99999999988777665555566778999876 7887744   4556665543 2222345544

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.90  E-value=1.3e-08  Score=99.22  Aligned_cols=127  Identities=19%  Similarity=0.321  Sum_probs=92.0

Q ss_pred             EEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          146 SVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      +|+||| +|.||+.+|+.|+..|++|.+|+|+....      .+.....+..+.+.+||+|++++|.. .+..++ .+..
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l~   79 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEVA   79 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHHH
Confidence            799997 89999999999999999999999876542      13333457888899999999999963 445555 4566


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC--CCcccCCCCcEEEcCCC
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE--VPEQMLGLNNVVLLPHV  280 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~--~~~~l~~~pnvi~TPHi  280 (313)
                      ..+++++++++++..+....+++.+.+..+ ..     +....|.  +..+++.-..++++|+-
T Consensus        80 ~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~-----~V~~HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         80 PHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE-----ILPTHPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             hhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE-----EEEcCCCCCCCCcccCCCEEEEecCC
Confidence            778999999999986655556666655432 11     1122332  22356677789999964

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.90  E-value=6.7e-09  Score=96.82  Aligned_cols=82  Identities=21%  Similarity=0.399  Sum_probs=68.5

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh-hc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID-AL  221 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~-~m  221 (313)
                      .+.+|||||+|.||+.+|+.|...|++|.+|+|+..        .+++++++++|+|++++|. +..+.++.. ... .+
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~~~~   72 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQALNL   72 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHHhcC
Confidence            356899999999999999999999999999999754        4688999999999999997 467776633 323 47


Q ss_pred             CCCcEEEEcCCCC
Q 021361          222 GPSGILINIGRGA  234 (313)
Q Consensus       222 k~ga~~in~~rg~  234 (313)
                      ++++++|++++|-
T Consensus        73 ~~~~ivi~~s~gi   85 (308)
T PRK14619         73 PPETIIVTATKGL   85 (308)
T ss_pred             CCCcEEEEeCCcc
Confidence            8899999998743

>PLN02712 arogenate dehydrogenase

Probab=98.89  E-value=1.6e-08  Score=103.17  Aligned_cols=105  Identities=19%  Similarity=0.324  Sum_probs=77.4

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHH-hhCCeeEEecCCChHhhhccCHH
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLA-SNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~-~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      -+.++|||||+|.||+.+|+.|+.+|++|.+|+++....    .+.....++++++ .++|+|++|+|. ..+..++..-
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l  128 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL  128 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence            345689999999999999999999999999999874321    2333456788866 469999999995 4677777664


Q ss_pred             HHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          217 VIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      .+..++++++|+|++.-+..-.+++.+.+.+
T Consensus       129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~  159 (667)
T PLN02712        129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE  159 (667)
T ss_pred             hhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence            4467899999999975553223344444433

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.88  E-value=1.2e-08  Score=99.24  Aligned_cols=129  Identities=15%  Similarity=0.194  Sum_probs=92.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----cc----------------cccCCHHHHHhhCCeeEEecC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----NY----------------KYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----~~----------------~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .+|||||+|.||..+|..|.. |++|++||+++.+..    +.                ...++..+.+++||++++|+|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp   85 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP   85 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence            579999999999999999877 799999999875421    11                022344457899999999999


Q ss_pred             CC------hHhhhcc--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEcc----CCCCCCCCCc----
Q 021361          205 LT------EETHHIV--NRKVIDALGPSGILINIGRGAHIDEPELVSALLEG--RLAGAGLD----VYENEPEVPE----  266 (313)
Q Consensus       205 ~~------~~t~~~i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g--~~~ga~lD----V~~~EP~~~~----  266 (313)
                      ..      ++...++  .+...+.+++|.++|+.|.-.+-..+.+.+.+.+.  ++.  ..|    +|.+||..+.    
T Consensus        86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~--~~~~~~~~~~PE~v~~G~a~~  163 (425)
T PRK15182         86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT--FNQDFYVGYSPERINPGDKKH  163 (425)
T ss_pred             CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC--cCCCeeEeeCCCcCCCCcccc
Confidence            65      2334444  24567889999999999999988888765554332  222  133    4678997653    


Q ss_pred             ccCCCCcEEE
Q 021361          267 QMLGLNNVVL  276 (313)
Q Consensus       267 ~l~~~pnvi~  276 (313)
                      .+...|+++.
T Consensus       164 ~~~~~~riv~  173 (425)
T PRK15182        164 RLTNIKKITS  173 (425)
T ss_pred             cccCCCeEEE
Confidence            4667777754

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.86  E-value=7.7e-09  Score=96.49  Aligned_cols=91  Identities=18%  Similarity=0.299  Sum_probs=68.5

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC-cc-----cccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE-KS-----DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~-~~-----~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      |+||+|||||+|+||+++|+.|+.+|++|+++++.. ..     ..+.. ..+..+++++||+|++++|.... ...+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence            579999999999999999999999999887654433 22     12333 34688899999999999996433 334456


Q ss_pred             HHHhhcCCCcEEEEcCCCCc
Q 021361          216 KVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~  235 (313)
                      +....++++. +|.++-|=-
T Consensus        79 ei~~~l~~g~-iVs~aaG~~   97 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGFN   97 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCcc
Confidence            6777888886 788877753

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.86  E-value=1.3e-08  Score=93.57  Aligned_cols=136  Identities=22%  Similarity=0.297  Sum_probs=85.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----c-ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----N-YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~-~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      +|||||+|.||+.+|+.|+..|++|.+||++++...     + .....+..+.+++||+|++|+|... ...++ ++...
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~~   79 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLIP   79 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHHH
Confidence            799999999999999999999999999999765321     1 1112222356889999999999543 33333 45667


Q ss_pred             hcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEc-cCCCCCCC-CC---cccCCCCcEEEcCCCCCCcHHHH
Q 021361          220 ALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGL-DVYENEPE-VP---EQMLGLNNVVLLPHVGSDTEETS  288 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~l-DV~~~EP~-~~---~~l~~~pnvi~TPHia~~t~~~~  288 (313)
                      .+++++++++++.-+.   + ..+++.......... =++.+|.. ..   ..|+.-.++++||+-. .+.+..
T Consensus        80 ~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~-~~~~~~  148 (279)
T PRK07417         80 ALPPEAIVTDVGSVKA---P-IVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTEN-TDLNAL  148 (279)
T ss_pred             hCCCCcEEEeCcchHH---H-HHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCC-CCHHHH
Confidence            7899999999987543   2 233332221111111 12222211 11   1267778899999754 344433

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.86  E-value=5.7e-09  Score=87.11  Aligned_cols=89  Identities=15%  Similarity=0.332  Sum_probs=62.9

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc------cccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS------DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~------~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      |+||+|+|||||+.|++-|..|+..|.+|.+-.|..++      ..+++ ..+..|++++||+|++.+|... -..++.+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~~-q~~vy~~   79 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDEV-QPEVYEE   79 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HHH-HHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChHH-HHHHHHH
Confidence            68999999999999999999999999999887776552      13333 4689999999999999998532 2335567


Q ss_pred             HHHhhcCCCcEEEEcCCC
Q 021361          216 KVIDALGPSGILINIGRG  233 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg  233 (313)
                      +....||+|+.++= +.|
T Consensus        80 ~I~p~l~~G~~L~f-ahG   96 (165)
T PF07991_consen   80 EIAPNLKPGATLVF-AHG   96 (165)
T ss_dssp             HHHHHS-TT-EEEE-SSS
T ss_pred             HHHhhCCCCCEEEe-CCc
Confidence            78889999998653 444

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.83  E-value=1.4e-08  Score=93.56  Aligned_cols=133  Identities=17%  Similarity=0.230  Sum_probs=90.4

Q ss_pred             ccccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||+|+|||.| .||+.+|.+|...|+.|++|++...         ++.++.++||+|+++++..    +++....
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~---------~l~e~~~~ADIVIsavg~~----~~v~~~~  220 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST---------DAKALCRQADIVVAAVGRP----RLIDADW  220 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC---------CHHHHHhcCCEEEEecCCh----hcccHhh
Confidence            457999999999996 9999999999999999999987543         6999999999999999864    3566544


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE  297 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~  297 (313)
                         +|+|+++||+|-..+.+         +|+- ...=||-.++-      .. ---.+||=-||--.-+..-..+.++.
T Consensus       221 ---ik~GaiVIDvgin~~~~---------~g~~-kl~GDvdf~~~------~~-~a~~iTPVPGGVGp~Tva~L~~N~~~  280 (301)
T PRK14194        221 ---LKPGAVVIDVGINRIDD---------DGRS-RLVGDVDFDSA------LP-VVSAITPVPGGVGPMTIAFLMKNTVT  280 (301)
T ss_pred             ---ccCCcEEEEecccccCC---------CCCc-ceecccchHHH------Hh-hcceecCCCCchhHHHHHHHHHHHHH
Confidence               89999999998554311         1310 13345521111      11 12467886666555444444444444


Q ss_pred             HHHHHHc
Q 021361          298 NLVAHFS  304 (313)
Q Consensus       298 ni~~~~~  304 (313)
                      -.+++..
T Consensus       281 a~~~~~~  287 (301)
T PRK14194        281 AARLQAH  287 (301)
T ss_pred             HHHHHHH
Confidence            4444443

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.82  E-value=6.8e-09  Score=79.65  Aligned_cols=85  Identities=24%  Similarity=0.398  Sum_probs=63.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcC---CcEE-EECCCCcccc------cccccC-CHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFG---CPIS-YHSRSEKSDA------NYKYYT-NIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g---~~V~-~~~~~~~~~~------~~~~~~-~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      ||||||+|+||+++++.|...|   .+|. +++|++++..      +..... +..+++++||+|++++|.. ....++ 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~-   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL-   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence            6999999999999999999999   8898 5588886432      222334 7999999999999999853 333333 


Q ss_pred             HHHHhhcCCCcEEEEcCCC
Q 021361          215 RKVIDALGPSGILINIGRG  233 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg  233 (313)
                      .+. ....++.++|++.-|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            333 667789999998654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.82  E-value=3e-08  Score=92.40  Aligned_cols=142  Identities=15%  Similarity=0.242  Sum_probs=89.2

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccc-----ccc--cccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSD-----ANY--KYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~-----~~~--~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      .++|+|||+|.||..+|+.|+..|.  +|++|+|+++..     .+.  ....+.++.+++||+|++++|.. ....++ 
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~-   83 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA-   83 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence            4689999999999999999998885  799999986532     111  12356788899999999999963 333333 


Q ss_pred             HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEc-cCCCCCCC-C--C-cccCCCCcEEEcCCCCCCcHHHHH
Q 021361          215 RKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGL-DVYENEPE-V--P-EQMLGLNNVVLLPHVGSDTEETSK  289 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~l-DV~~~EP~-~--~-~~l~~~pnvi~TPHia~~t~~~~~  289 (313)
                      ++....++++.++++++....--.+++.+.+.. .+..... -++..|-. +  . .+|+.-.+++++|+-+ .+.+..+
T Consensus        84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~-~~~~~~~  161 (307)
T PRK07502         84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEG-TDPAAVA  161 (307)
T ss_pred             HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCC-CCHHHHH
Confidence            445567899999999976543222333333222 2221111 22222211 1  1 2466667889999654 3444443

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.82  E-value=4.4e-09  Score=100.89  Aligned_cols=101  Identities=26%  Similarity=0.304  Sum_probs=75.5

Q ss_pred             CCcCCCcccc-cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC------cc-----cccccccCCHHHHHhhCC
Q 021361          130 KWKNGHFELG-SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE------KS-----DANYKYYTNIIDLASNCQ  197 (313)
Q Consensus       130 ~w~~~~~~~~-~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~------~~-----~~~~~~~~~l~~l~~~aD  197 (313)
                      -|.+..++.+ ..|+||+|+|||||++|++-|..|+..|.+|.+--|..      .+     ..+.. ..++++++++||
T Consensus        21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~-v~~~~Ea~~~AD   99 (487)
T PRK05225         21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQAD   99 (487)
T ss_pred             ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCc-cCCHHHHHHhCC
Confidence            4765555443 57999999999999999988888888888877433321      11     12333 468999999999


Q ss_pred             eeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          198 ILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       198 vv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      +|++.+|++ . ++.+.++.+..||+|+.|. .|.|=
T Consensus       100 vVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF  133 (487)
T PRK05225        100 LVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF  133 (487)
T ss_pred             EEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence            999999998 3 6677799999999999864 34443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.81  E-value=7.9e-08  Score=88.69  Aligned_cols=135  Identities=14%  Similarity=0.182  Sum_probs=92.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------------------------------cccccCCHHHHHh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------------------------------NYKYYTNIIDLAS  194 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------------------------~~~~~~~l~~l~~  194 (313)
                      ++|+|||.|.||..+|..+...|.+|+.||++.+...                              ......++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            5899999999999999999999999999998764210                              0112467888899


Q ss_pred             hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEccCCCCCCCCCcccCCCCc
Q 021361          195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG-RLAGAGLDVYENEPEVPEQMLGLNN  273 (313)
Q Consensus       195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g-~~~ga~lDV~~~EP~~~~~l~~~pn  273 (313)
                      .||+|+.++|...+.+.-+-++..+.++++++++..+.+  +....+.+.+... ++.|.  -  .     ..|.+..|.
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~r~vg~--H--f-----~~p~~~~~l  152 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPEKFLAL--H--F-----ANEIWKNNT  152 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcccEEEE--c--C-----CCCCCcCCe
Confidence            999999999977666655555566778889988543333  3556666665432 23332  1  1     223556678


Q ss_pred             EEEcCCCCCCcHHHHHHH
Q 021361          274 VVLLPHVGSDTEETSKAM  291 (313)
Q Consensus       274 vi~TPHia~~t~~~~~~~  291 (313)
                      +.+.|+-. .+.+..+..
T Consensus       153 vevv~~~~-t~~~~~~~~  169 (287)
T PRK08293        153 AEIMGHPG-TDPEVFDTV  169 (287)
T ss_pred             EEEeCCCC-CCHHHHHHH
Confidence            88888644 444444433

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.79  E-value=8.3e-08  Score=87.39  Aligned_cols=98  Identities=19%  Similarity=0.315  Sum_probs=75.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC----cEEEE-CCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC----PISYH-SRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~----~V~~~-~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      +|||||+|+||.++++.|...|+    +|++| +|+.+..     .+.....+..+++++||+|++|+| ....+.++. 
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~-   79 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT-   79 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH-
Confidence            69999999999999999998887    78888 8876542     234445688889999999999996 555666663 


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          216 KVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      +....++++.++|++.-|  +..+.+.+.+..
T Consensus        80 ~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~  109 (266)
T PLN02688         80 ELRPLLSKDKLLVSVAAG--ITLADLQEWAGG  109 (266)
T ss_pred             HHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence            455667889999988655  467777765543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.79  E-value=1e-07  Score=89.18  Aligned_cols=101  Identities=14%  Similarity=0.233  Sum_probs=82.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc--------------------c-----ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA--------------------N-----YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------------~-----~~~~~~l~~l~~~aDvv  199 (313)
                      ++|||||.|.||..+|..+...|++|..||++++...                    +     .....++++.+++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            6899999999999999999999999999999864210                    0     12346888999999999


Q ss_pred             EEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          200 IVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       200 ~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      +-++|-+.+.+..+-++.-+.+++++ ++.++.. -+...++.+.++.
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~~  133 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDA-IIASSTS-GLLPTDFYARATH  133 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCC-ccCHHHHHHhcCC
Confidence            99999999999877788888899998 4555555 4577778877754

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.78  E-value=7e-08  Score=93.61  Aligned_cols=104  Identities=11%  Similarity=0.143  Sum_probs=77.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccc-----c-ccCCHHHHH---------------hhCCeeEEec
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY-----K-YYTNIIDLA---------------SNCQILIVAC  203 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----~-~~~~l~~l~---------------~~aDvv~l~~  203 (313)
                      ++|+|||+|.||..+|..|...|++|++||++++.....     . ....+++++               ++||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            689999999999999999999999999999987542110     0 112444443               3799999999


Q ss_pred             CCC------hHhhhcc--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          204 SLT------EETHHIV--NRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       204 p~~------~~t~~~i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      |..      ++...+.  -+.....+++|+++|+.+.-.+-..+.+...+.+.
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            964      1222222  24567779999999999998888888888877664

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.77  E-value=2.2e-07  Score=88.99  Aligned_cols=121  Identities=17%  Similarity=0.228  Sum_probs=84.0

Q ss_pred             cHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          101 TDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       101 ~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .....+..+-.++...|+..      ++..+..      ..-..++|+||| +|.||+.+|+.|+..|++|.+|++... 
T Consensus        67 ~~~~~~~i~~~i~~~s~~~q------~~~~~~~------~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-  133 (374)
T PRK11199         67 PPDLIEDVLRRVMRESYSSE------NDKGFKT------LNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-  133 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHHh------HHhcccc------cCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-
Confidence            44455666666666655432      2222211      111457999999 999999999999999999999998531 


Q ss_pred             cccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHH
Q 021361          180 DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSA  244 (313)
Q Consensus       180 ~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~a  244 (313)
                             .+.++++++||+|++|+|... +..++ ++... +++|+++++++.-+..-.+++.+.
T Consensus       134 -------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~  188 (374)
T PRK11199        134 -------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAA  188 (374)
T ss_pred             -------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence                   367788999999999999764 44455 33444 899999999977654334444443

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.76  E-value=6.9e-08  Score=91.96  Aligned_cols=135  Identities=19%  Similarity=0.261  Sum_probs=89.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cc----cccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NY----KYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~----~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      ++|+|||+|.||+++|+.|+..|++|.+|+++.....     +.    ....++++++++||+|++|+|.. .+..++. 
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~-   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA-   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence            4799999999999999999999999888877654321     11    12356788899999999999964 5565553 


Q ss_pred             HHHh-hcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC----------cccCCCCcEEEcCCCCCCc
Q 021361          216 KVID-ALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP----------EQMLGLNNVVLLPHVGSDT  284 (313)
Q Consensus       216 ~~l~-~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~----------~~l~~~pnvi~TPHia~~t  284 (313)
                      +... .+++++++++++.-+.-..+++.+.+.. ...  .+..   -|...          ..|+.....++||+-. .+
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~---HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~-~~  151 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGG---HPMAGSHKSGVAAARADLFENAPWVLTPDDH-TD  151 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEee---CCcCcCchhhHHHhcHHHHCCCcEEEecCCC-CC
Confidence            3433 4789999999988765444444433221 222  2232   23211          1467777789999754 33


Q ss_pred             HHHH
Q 021361          285 EETS  288 (313)
Q Consensus       285 ~~~~  288 (313)
                      .+..
T Consensus       152 ~~~~  155 (359)
T PRK06545        152 PDAV  155 (359)
T ss_pred             HHHH
Confidence            3433

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.75  E-value=1.1e-07  Score=87.83  Aligned_cols=98  Identities=23%  Similarity=0.313  Sum_probs=73.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|+|||.|.||..+|..+...|++|.+||++++...                +             .....+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            6899999999999999999999999999999764311                1             11234554 4789


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEE-EcCCCCccCHHHHHHHHH
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILI-NIGRGAHIDEPELVSALL  246 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~i-n~~rg~~vd~~al~~al~  246 (313)
                      ||+|+.++|...+.+..+-++..+.++++++|+ |++.-.   ...+.+.+.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~  132 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATD  132 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcC
Confidence            999999999887766655456777889999988 555433   346766653

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.73  E-value=1.3e-07  Score=86.73  Aligned_cols=130  Identities=20%  Similarity=0.286  Sum_probs=88.0

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc--c-----ccc--cccCCH-HHHHhhCCeeEEecCCChHhhhcc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS--D-----ANY--KYYTNI-IDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~-----~~~--~~~~~l-~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      -++|+|+|+|.||+.+|+.++..|+.+.++++....  .     .+.  ....+. .+..+++|+|++++|.. .+..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence            368999999999999999999999987555444332  1     111  111233 66778899999999964 444444


Q ss_pred             CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC----CcccCCCCcEEEcCCCC
Q 021361          214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV----PEQMLGLNNVVLLPHVG  281 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~----~~~l~~~pnvi~TPHia  281 (313)
                      . +....+|+|+++++++.-+---.+++.+.+.++. .     +...-|..    ..+++..-.+++||.-.
T Consensus        82 ~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~-----~vg~HPM~G~~~~~~lf~~~~~vltp~~~  146 (279)
T COG0287          82 K-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R-----FVGGHPMFGPEADAGLFENAVVVLTPSEG  146 (279)
T ss_pred             H-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e-----eEecCCCCCCcccccccCCCEEEEcCCCC
Confidence            3 3445799999999999877655566655554432 2     22445532    23688888899999643

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.71  E-value=2.9e-07  Score=84.63  Aligned_cols=100  Identities=17%  Similarity=0.242  Sum_probs=75.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|+|||.|.||..+|..+...|++|.+||++++...                +             .....+.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5899999999999999999999999999998764321                1             11134554 4789


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      ||+|+.++|-+...+.-+-++..+.++++++++....|  +..+.+.+.+..
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            99999999987777755555566778999988444344  666688887743

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.70  E-value=2.1e-07  Score=92.32  Aligned_cols=101  Identities=12%  Similarity=0.177  Sum_probs=76.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------------------------c-ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------------------------N-YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~~l~~~aDvv  199 (313)
                      ++|||||.|.||..+|..|...|++|.+||++++...                        + .....++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            4899999999999999999999999999999865321                        1 23456888999999999


Q ss_pred             EEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          200 IVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       200 ~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      +.++|...+.+..+-++.-+.++++++ |.++..++ ..+.+.+.+..
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~  130 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTH  130 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCC
Confidence            999998877776554455556777765 55555554 36677776644

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.70  E-value=4.5e-07  Score=86.35  Aligned_cols=121  Identities=17%  Similarity=0.257  Sum_probs=83.2

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHh-cCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCH--HHH
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEA-FGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR--KVI  218 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~--~~l  218 (313)
                      .-.+|+|||+ |.||+.+|+.|+. +|.+|++||+..+      ...++++.+++||+|++|+|.. .+..++.+  ...
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~~~~   75 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIR-HTAALIEEYVALA   75 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhhh
Confidence            4569999999 9999999999995 5889999998522      1346788999999999999964 34444432  112


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC-C--cccCCCCcEEEcCC
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV-P--EQMLGLNNVVLLPH  279 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~-~--~~l~~~pnvi~TPH  279 (313)
                      ..+++++++++++.-+-    .+.+++.....     ++...-|.. +  ..+++.-++++||.
T Consensus        76 ~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         76 GGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             cCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence            34899999999987662    22222222211     233455632 1  25777778999986

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.69  E-value=5.1e-08  Score=90.31  Aligned_cols=98  Identities=20%  Similarity=0.362  Sum_probs=82.1

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      -+.||++-|.|||..|+.+|.++++.|++|.+....+-..     .+++ ...+++....+|+++.++    .+++.|..
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~-V~~m~~Aa~~gDifiT~T----GnkdVi~~  280 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKTGDIFVTAT----GNKDVIRK  280 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE-EEEhHHhhhcCCEEEEcc----CCcCccCH
Confidence            3689999999999999999999999999999987766432     3444 357999999999999877    66899999


Q ss_pred             HHHhhcCCCcEEEEcCCCCc-cCHHHHHH
Q 021361          216 KVIDALGPSGILINIGRGAH-IDEPELVS  243 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~-vd~~al~~  243 (313)
                      +.|..||+|+++.|.|.=.. +|.+.|.+
T Consensus       281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~  309 (420)
T COG0499         281 EHFEKMKDGAILANAGHFDVEIDVAGLEE  309 (420)
T ss_pred             HHHHhccCCeEEecccccceeccHHHHHH
Confidence            99999999999999986554 66666554

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.67  E-value=3.2e-08  Score=94.56  Aligned_cols=91  Identities=18%  Similarity=0.295  Sum_probs=72.8

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cccc---c---cCCHHHHHhhCCeeEEecCCCh-
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYK---Y---YTNIIDLASNCQILIVACSLTE-  207 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~---~---~~~l~~l~~~aDvv~l~~p~~~-  207 (313)
                      .+.+++|.|+|.|.+|+.+++.++.+|++|.++|++....      .+..   .   ...+.+.++++|+|+.+++.+. 
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            4678899999999999999999999999999999876431      1110   0   1346777899999999986532 


Q ss_pred             HhhhccCHHHHhhcCCCcEEEEcC
Q 021361          208 ETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       208 ~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      .+..+++++.++.||+++++||++
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEe
Confidence            345578999999999999999987

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.66  E-value=2e-07  Score=81.54  Aligned_cols=105  Identities=18%  Similarity=0.271  Sum_probs=81.6

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------cccccCCHHHHHh-hCCeeEEecCCChHhhh
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------NYKYYTNIIDLAS-NCQILIVACSLTEETHH  211 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~~~~~~~l~~l~~-~aDvv~l~~p~~~~t~~  211 (313)
                      +.+++||+++|+|+|+||+.+|+.|..+|++|+++|++.+...      +... .+.++++. +||+++.+..     .+
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~-v~~~~l~~~~~Dv~vp~A~-----~~   96 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATV-VAPEEIYSVDADVFAPCAL-----GG   96 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEE-EcchhhccccCCEEEeccc-----cc
Confidence            3468999999999999999999999999999999998765321      2222 23455654 7999886654     45


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +|+++.++.|+ ..+++.-+-+.+.| ..-.+.|++..+.
T Consensus        97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            89999999997 56888888888876 5566777888776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.66  E-value=1.2e-07  Score=80.56  Aligned_cols=82  Identities=22%  Similarity=0.374  Sum_probs=70.6

Q ss_pred             cccCCCEEEEEcCChh-HHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          140 SKFSGKSVGIVGLGRI-GTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      ..|.|+++.|||.|.+ |+.+|+.|...|++|++.+|+.         .++.+.++++|+|+.+++..    +++.++. 
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~----~ii~~~~-  105 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP----GLVKGDM-  105 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC----ceecHHH-
Confidence            3589999999999996 8889999999999999999863         36888999999999999753    3688765 


Q ss_pred             hhcCCCcEEEEcCCCCccC
Q 021361          219 DALGPSGILINIGRGAHID  237 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd  237 (313)
                        ++++.++||+|...-+|
T Consensus       106 --~~~~~viIDla~prdvd  122 (168)
T cd01080         106 --VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             --ccCCeEEEEccCCCccc
Confidence              58899999999988887

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.66  E-value=4.9e-07  Score=87.68  Aligned_cols=131  Identities=15%  Similarity=0.204  Sum_probs=88.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------------------------c-ccccCCHHHHHhhCCeeE
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------------------------N-YKYYTNIIDLASNCQILI  200 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~~l~~~aDvv~  200 (313)
                      +|||||+|.||..+|..|...|++|++||++.+...                        + .....++++++++||+|+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi   81 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII   81 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence            699999999999999999999999999998765310                        1 223457888899999999


Q ss_pred             EecCCChH------hhhcc--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHH-HhC-CceEEEccC---CCCCCCCCc-
Q 021361          201 VACSLTEE------THHIV--NRKVIDALGPSGILINIGRGAHIDEPELVSAL-LEG-RLAGAGLDV---YENEPEVPE-  266 (313)
Q Consensus       201 l~~p~~~~------t~~~i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~al-~~g-~~~ga~lDV---~~~EP~~~~-  266 (313)
                      +|+|....      ...+.  .....+.+++|.++|+.|.-.+=..+.+.+.+ ++. .+. ...|.   +.+|...+. 
T Consensus        82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~G~  160 (411)
T TIGR03026        82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLREGN  160 (411)
T ss_pred             EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCCCC
Confidence            99996532      11122  13456678999999999876666666776444 431 111 12342   344544332 


Q ss_pred             ---ccCCCCcEEEc
Q 021361          267 ---QMLGLNNVVLL  277 (313)
Q Consensus       267 ---~l~~~pnvi~T  277 (313)
                         .++..+.+++.
T Consensus       161 ~~~~~~~~~~iv~G  174 (411)
T TIGR03026       161 AVHDLLNPDRIVGG  174 (411)
T ss_pred             hhhhhcCCCEEEEe
Confidence               35666777766

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.65  E-value=1.6e-07  Score=78.29  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=78.8

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCcccc------cc----cccCCHHHHHhhCCeeEEecCCChH-
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSDA------NY----KYYTNIIDLASNCQILIVACSLTEE-  208 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~------~~----~~~~~l~~l~~~aDvv~l~~p~~~~-  208 (313)
                      .+++++++|+|.|.||+.+++.+...| .+|.+++|+.+...      +.    ....+..++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            466889999999999999999999886 67999999865321      11    1235677788999999999998654 


Q ss_pred             hhh-ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          209 THH-IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       209 t~~-~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ... .+..   ..++++.+++|++..+...  .+.+.+++..+.
T Consensus        96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~  134 (155)
T cd01065          96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK  134 (155)
T ss_pred             CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence            222 2332   2368999999998775443  788888776554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.65  E-value=1.2e-07  Score=86.85  Aligned_cols=81  Identities=16%  Similarity=0.371  Sum_probs=69.2

Q ss_pred             ccccCCCEEEEEcCChh-HHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGRI-GTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||.|.+ |+.++.+|...|+.|+++....         .++.+.+++||+|+++++    +.++++.  
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t---------~~l~~~~~~ADIVV~avG----~~~~i~~--  217 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT---------RDLAAHTRQADIVVAAVG----KRNVLTA--  217 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC---------CCHHHHhhhCCEEEEcCC----CcCccCH--
Confidence            45789999999999999 9999999999999998876432         368899999999999997    3567887  


Q ss_pred             HhhcCCCcEEEEcCCCCc
Q 021361          218 IDALGPSGILINIGRGAH  235 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~  235 (313)
                       +.+|+|+++||+|-..+
T Consensus       218 -~~ik~gavVIDVGin~~  234 (285)
T PRK14189        218 -DMVKPGATVIDVGMNRD  234 (285)
T ss_pred             -HHcCCCCEEEEcccccc
Confidence             55899999999996554

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.64  E-value=1.3e-07  Score=87.25  Aligned_cols=78  Identities=19%  Similarity=0.385  Sum_probs=66.3

Q ss_pred             cccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEEC-CCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          140 SKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHS-RSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       140 ~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      .++.||+|+||| .|.||+.+|.+|...|+.|++|+ |+.          ++++++++||+|+++++...    ++.+..
T Consensus       154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~  219 (296)
T PRK14188        154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW  219 (296)
T ss_pred             CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence            468999999999 99999999999999999999995 543          58999999999999998643    455433


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         +|+|+++||+|--.
T Consensus       220 ---lk~GavVIDvGin~  233 (296)
T PRK14188        220 ---IKPGATVIDVGINR  233 (296)
T ss_pred             ---ecCCCEEEEcCCcc
Confidence               89999999998654

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.63  E-value=1.3e-07  Score=86.70  Aligned_cols=98  Identities=17%  Similarity=0.231  Sum_probs=76.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC----cEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC----PISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      ++|||||+|+||.++++.|...|+    +|++++|+.+..      .+.....+..+++++||+|++++|. .....++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl-   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI-   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence            479999999999999999998774    599999876542      2333456788899999999999994 5666655 


Q ss_pred             HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361          215 RKVIDALGPSGILINIGRGAHIDEPELVSALL  246 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~  246 (313)
                      .+....++++.++|++.-|  ++.+.|.+.+.
T Consensus        81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence            3455567888999999877  56677777664

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.62  E-value=8.2e-07  Score=81.96  Aligned_cols=89  Identities=16%  Similarity=0.179  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHhcCCcEEEECCCCccc----------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCC
Q 021361          155 IGTAIAKRVEAFGCPISYHSRSEKSD----------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS  224 (313)
Q Consensus       155 iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~g  224 (313)
                      -|+.||+.|...|++|++|||+....          .+.....+..+++++||+|++|+|..+.++.++ ...++.+++|
T Consensus        31 gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~G  109 (341)
T TIGR01724        31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPEN  109 (341)
T ss_pred             CHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCC
Confidence            38899999999999999999865421          245556789999999999999999888888887 5688999999


Q ss_pred             cEEEEcCCCCccCHHHHHHHHHh
Q 021361          225 GILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       225 a~~in~~rg~~vd~~al~~al~~  247 (313)
                      +++||++.   ++.+.++..|..
T Consensus       110 aIVID~ST---IsP~t~~~~~e~  129 (341)
T TIGR01724       110 AVICNTCT---VSPVVLYYSLEK  129 (341)
T ss_pred             CEEEECCC---CCHHHHHHHHHH
Confidence            99999966   455666666655

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.62  E-value=4.7e-07  Score=83.71  Aligned_cols=100  Identities=22%  Similarity=0.279  Sum_probs=75.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-------------------cc-------------cccCCHHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------------------NY-------------KYYTNIIDL  192 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~~l  192 (313)
                      ++|+|||.|.||..+|..+...|++|+.||++++...                   +.             ....++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            5899999999999999999999999999998764321                   00             112344 56


Q ss_pred             HhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          193 ASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       193 ~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      +++||+|+.++|...+.+.-+-++.-+.++++++|++...|  +..+.+.+.+..
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~  135 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER  135 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC
Confidence            78999999999987665554445555668899999877666  466777777743

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.62  E-value=1.9e-07  Score=82.24  Aligned_cols=111  Identities=20%  Similarity=0.261  Sum_probs=94.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHH---hhCCeeEEecCCChHhhhccCHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLA---SNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~---~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      .++|.||+|+||..++++|...|.+|++||+++...     .+.....++++++   ....+|.+++|....|...|+ +
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence            368999999999999999999999999999987542     3344456777765   457899999999877777766 4


Q ss_pred             HHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCC
Q 021361          217 VIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVY  258 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~  258 (313)
                      +-..|.+|-++|+-+....-|.....+.|.+..|.  .+||-
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G  119 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG  119 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence            66789999999999999999999999999999997  78874

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.62  E-value=1.2e-07  Score=86.89  Aligned_cols=104  Identities=22%  Similarity=0.255  Sum_probs=78.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHh--cCCcEE-EECCCCcccc------c-ccccCCHHHHHhhCCeeEEecCCChHhhhc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEA--FGCPIS-YHSRSEKSDA------N-YKYYTNIIDLASNCQILIVACSLTEETHHI  212 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~--~g~~V~-~~~~~~~~~~------~-~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~  212 (313)
                      ...+|||||+|.||+.+++.+..  .++++. ++||.++...      + ...+.+++++++++|+|++|+|.....  -
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~--e   82 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLR--A   82 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHH--H
Confidence            45799999999999999999986  478875 7888765321      2 234678999999999999999964332  2


Q ss_pred             cCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       213 i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +.   ...++.|.-++..+.|.+.+.++|.++.++++..
T Consensus        83 ~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         83 IV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             HH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            22   3335667767778899888899999999887654

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.60  E-value=8.4e-08  Score=87.02  Aligned_cols=90  Identities=19%  Similarity=0.359  Sum_probs=76.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      .+.||.+-|.|||.+|+..|+.|++||++|++....+-..     .+++ ...++|++++.|+++.++    ..+.+|..
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtT----Gc~dii~~  285 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTT----GCKDIITG  285 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEcc----CCcchhhH
Confidence            3589999999999999999999999999999876655322     3344 468999999999999865    66889999


Q ss_pred             HHHhhcCCCcEEEEcCCCCc
Q 021361          216 KVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~  235 (313)
                      +.|++||++++++|+|.-..
T Consensus       286 ~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  286 EHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHHhCcCCcEEeccccccc
Confidence            99999999999999987553

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.58  E-value=4.2e-07  Score=90.29  Aligned_cols=112  Identities=20%  Similarity=0.347  Sum_probs=83.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|||||.|.||+.+|..+...|++|+.||++++...                +             .....++++ +++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            5899999999999999999999999999999875321                1             122456765 569


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEE-EEcCCCCccCHHHHHHHHHh-CCceEEEccCCCCCC
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGIL-INIGRGAHIDEPELVSALLE-GRLAGAGLDVYENEP  262 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~-in~~rg~~vd~~al~~al~~-g~~~ga~lDV~~~EP  262 (313)
                      ||+|+-++|.+.+.+..+-.+.-..++++++| +|+|.-.+   +.+..++.. .++  .++..|.+-|
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~  150 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVP  150 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCcc
Confidence            99999999999998887666555557899998 59877665   356666543 233  4556666554

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.58  E-value=7.5e-07  Score=83.07  Aligned_cols=135  Identities=16%  Similarity=0.127  Sum_probs=84.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------------cc-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------------AN-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------------~~-------------~~~~~~l~~l~~~  195 (313)
                      ++|+|||.|.||..+|..|...|++|.+||+++...                .+             .....++++++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            479999999999999999999999999999986421                11             1234688889999


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEE
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVV  275 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi  275 (313)
                      ||+|+.++|...+.+..+-.+.-+..+++.++ ..+.. ......+.+.+.....  ...|-+-+ |.     .-.|=+.
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii-~ssts-~~~~~~la~~~~~~~~--~~~~hp~~-p~-----~~~~lve  152 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAELDALAPPHAIL-ASSTS-ALLASAFTEHLAGRER--CLVAHPIN-PP-----YLIPVVE  152 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCcceE-EEeCC-CCCHHHHHHhcCCccc--EEEEecCC-Cc-----ccCceEE
Confidence            99999999987655543333332334444444 43333 3456677777754332  23333322 21     1112366


Q ss_pred             EcCCCCCCcHHHHHH
Q 021361          276 LLPHVGSDTEETSKA  290 (313)
Q Consensus       276 ~TPHia~~t~~~~~~  290 (313)
                      ++|+-+ .+.+..+.
T Consensus       153 iv~~~~-t~~~~~~~  166 (308)
T PRK06129        153 VVPAPW-TAPATLAR  166 (308)
T ss_pred             EeCCCC-CCHHHHHH
Confidence            777744 34444443

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.58  E-value=2.6e-07  Score=86.78  Aligned_cols=97  Identities=20%  Similarity=0.216  Sum_probs=74.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----c--------c------ccccCCHHHHHhhCCeeEEecCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----A--------N------YKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~--------~------~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .+|+|||.|.||..+|..|...|++|.+|+|+++..     .        +      .....+++++++.+|+|++++|.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~   84 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS   84 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence            479999999999999999999999999999975421     0        1      12345788889999999999996


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCC-CccC--HHHHHHHHHh
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRG-AHID--EPELVSALLE  247 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg-~~vd--~~al~~al~~  247 (313)
                      . .+     ++.++.++++.++|+++.| ..-+  .+.+.+.+.+
T Consensus        85 ~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         85 K-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             H-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            5 22     4566788999999999997 4333  4566666654

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.57  E-value=2.9e-07  Score=84.64  Aligned_cols=101  Identities=18%  Similarity=0.231  Sum_probs=74.9

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcC----CcEEEECCCCccc-------ccccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFG----CPISYHSRSEKSD-------ANYKYYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~-------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      ++.+|||||+|+||.++++.|...|    .+|.+++|+....       .+.....+..+++++||+|++++|.. ....
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHH
Confidence            3468999999999999999999887    6799999875321       13444567888999999999999843 4444


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      .+ .+....++++.++|++.-|  +..+.+.+.+..
T Consensus        81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~  113 (279)
T PRK07679         81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK  113 (279)
T ss_pred             HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            44 3455567889999998655  356667666543

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.57  E-value=4.6e-07  Score=84.43  Aligned_cols=101  Identities=17%  Similarity=0.213  Sum_probs=71.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------c--------------ccccCCHHHHHhhCCeeE
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------N--------------YKYYTNIIDLASNCQILI  200 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------~--------------~~~~~~l~~l~~~aDvv~  200 (313)
                      ++|+|||.|.||..+|..|...|++|++||++.+...          +              .....++++.+++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            5899999999999999999999999999998764310          1              122456778899999999


Q ss_pred             EecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          201 VACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       201 l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      +++|...+...-+-.+.-..++++++++....|  +..+.+.+.+..
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~  129 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR  129 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence            999987654433333343446777766533333  346677777643

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.56  E-value=3.2e-07  Score=83.96  Aligned_cols=128  Identities=18%  Similarity=0.300  Sum_probs=87.7

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||+|+|||. |.+|+.+|.+|...|+.|++|...         ..++.+..++||+|+.+++.    .+++....
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~----~~~v~~~~  219 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGR----GHFVTKEF  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCc----cccCCHHH
Confidence            45799999999999 999999999999999999998322         13689999999999999976    34466544


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE  297 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~  297 (313)
                         +|+|+++||+|--...          +|++.   =||-..+      .... --.+||==||--.-+..-+.+.+++
T Consensus       220 ---ik~GavVIDvgin~~~----------~gkl~---GDVdf~~------v~~~-a~~iTPVPGGVGp~T~a~L~~N~~~  276 (284)
T PRK14179        220 ---VKEGAVVIDVGMNRDE----------NGKLI---GDVDFDE------VAEV-ASYITPVPGGVGPMTITMLMEQTYQ  276 (284)
T ss_pred             ---ccCCcEEEEecceecC----------CCCee---cCccHHH------HHhh-ccEecCCCCCchHHHHHHHHHHHHH
Confidence               8999999999855432          34443   3552111      1111 1458887676555444444444444


Q ss_pred             HHHHH
Q 021361          298 NLVAH  302 (313)
Q Consensus       298 ni~~~  302 (313)
                      -.+++
T Consensus       277 a~~~~  281 (284)
T PRK14179        277 AALRS  281 (284)
T ss_pred             HHHHH
Confidence            44443

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.56  E-value=7.2e-07  Score=81.79  Aligned_cols=94  Identities=17%  Similarity=0.393  Sum_probs=67.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccc-----ccc-cccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSD-----ANY-KYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~-----~~~-~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +|+|||+|.||+.+|+.|+..|.  +|++||+++...     .+. ....+.+++. +||+|++|+|... ....+ .+.
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~l   78 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PKL   78 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HHH
Confidence            79999999999999999998885  689999976532     121 1234677765 5999999999643 33344 345


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      .. ++++++++++|.-    ...+.+.+.+
T Consensus        79 ~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         79 LD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             hc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            56 8899999997653    3445555544

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.54  E-value=8.7e-07  Score=81.84  Aligned_cols=112  Identities=19%  Similarity=0.279  Sum_probs=79.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|||||.|.||..+|..+...|++|+.||++++...                +             .....++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            4899999999999999999999999999999875421                0             0123566 55799


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhc-CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCC
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDAL-GPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYEN  260 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~m-k~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~  260 (313)
                      ||+|+-++|.+.+.+..+-...-+.+ +++++|++.+.+-  ...++..+++... ...++.-|.+
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~--~~~~la~~~~~~~-r~~g~hf~~P  147 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSI--PIMKLAAATKRPG-RVLGLHFFNP  147 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCCc-cEEEEecCCC
Confidence            99999999999998887665444445 7899998876654  4444445443321 1235555554

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.50  E-value=2.1e-07  Score=76.30  Aligned_cols=94  Identities=19%  Similarity=0.307  Sum_probs=70.1

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccccc-----------ccccCCHHHHHhhCCeeEEecCCChH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDAN-----------YKYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~-----------~~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      .++|+++.|||.|.+|+.++..|...|++ |++++|+.++...           ...+.++.+.+.++|+|+.++|....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            68999999999999999999999999997 9999998754211           11245677789999999999986433


Q ss_pred             hhhccCHHHHhhcCCCc-EEEEcCCCCccC
Q 021361          209 THHIVNRKVIDALGPSG-ILINIGRGAHID  237 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga-~~in~~rg~~vd  237 (313)
                         .+.++.++..++.. ++++.+...-++
T Consensus        89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   89 ---IITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             ---SSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             ---ccCHHHHHHHHhhhhceeccccCCCCC
Confidence               77888877665443 888887654343

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.50  E-value=3.4e-07  Score=85.56  Aligned_cols=88  Identities=17%  Similarity=0.361  Sum_probs=68.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----c--------------cccccCCHHHHHhhCCeeEEecCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----A--------------NYKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~--------------~~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +|+|||.|.||..+|..|...|++|.+|+|+++..     .              +.....++++++++||+|++++|. 
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~-   81 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS-   81 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH-
Confidence            79999999999999999999999999999975321     1              122345788889999999999996 


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                      ..++.++. +....+++++++|+++.|--
T Consensus        82 ~~~~~v~~-~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         82 QALREVLK-QLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             HHHHHHHH-HHHhhcCCCCEEEEEeeccc
Confidence            45565553 45566788999999975543

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.49  E-value=2.5e-07  Score=77.76  Aligned_cols=87  Identities=22%  Similarity=0.360  Sum_probs=63.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------------c------cccccCCHHHHHhhCCeeEEecCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------------A------NYKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------------~------~~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +|+|+|.|++|.++|..|...|.+|..|.|..+..             .      ......+++++++.+|+|++++|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            69999999999999999999999999999986421             0      1223578999999999999999964


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      . .+.+ -++....++++..+|++..|=
T Consensus        81 ~-~~~~-~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   81 A-HREV-LEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             G-HHHH-HHHHTTTSHTT-EEEETS-SE
T ss_pred             H-HHHH-HHHHhhccCCCCEEEEecCCc
Confidence            3 2333 334666678899999998764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.47  E-value=7.1e-07  Score=88.53  Aligned_cols=114  Identities=17%  Similarity=0.206  Sum_probs=82.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|||||.|.||+.+|..+...|++|..||++++...                +             .....++++ +++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            5899999999999999999999999999999865321                1             112456765 569


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILI-NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE  263 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~i-n~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~  263 (313)
                      ||+|+.++|.+.+.+..+-.+.-+.+++++++. |+|.-.+   +.+.+.++.. ....++.-|.+-|.
T Consensus        85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~p-~r~~G~HFf~Papv  149 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLARP-ERVAGLHFFNPAPV  149 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCcc-cceEEEeccCcccc
Confidence            999999999988888876666556678888766 6655443   5666766432 23356666665553

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.45  E-value=8.3e-07  Score=81.44  Aligned_cols=80  Identities=13%  Similarity=0.346  Sum_probs=68.1

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +..|+||++.|||.|. +|+.+|.+|...|+.|+++.++.         .++.+.+++||+|+.+++.    .+++.++.
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~  219 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV  219 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH
Confidence            3469999999999999 99999999999999999887643         3688999999999999975    44677754


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         +|+|+++||+|-..
T Consensus       220 ---vk~gavVIDvGi~~  233 (286)
T PRK14175        220 ---VKEGAVIIDVGNTP  233 (286)
T ss_pred             ---cCCCcEEEEcCCCc
Confidence               68999999999654

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.45  E-value=1.1e-07  Score=76.97  Aligned_cols=102  Identities=21%  Similarity=0.321  Sum_probs=60.2

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEE-ECCCCcccc------cccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISY-HSRSEKSDA------NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      ..+|||||.|++|..+++.|...|+.|.. |+|+..+..      +.....++++++.++|++++++|.+.- .. +.++
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI-~~-va~~   87 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAI-AE-VAEQ   87 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHH-HH-HHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHH-HH-HHHH
Confidence            46899999999999999999999999865 567653321      122345788899999999999997632 22 3333


Q ss_pred             HHhh--cCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          217 VIDA--LGPSGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       217 ~l~~--mk~ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                      .-..  .++|.+|+-+|  +-...+-|.-+-+.|-
T Consensus        88 La~~~~~~~g~iVvHtS--Ga~~~~vL~p~~~~Ga  120 (127)
T PF10727_consen   88 LAQYGAWRPGQIVVHTS--GALGSDVLAPARERGA  120 (127)
T ss_dssp             HHCC--S-TT-EEEES---SS--GGGGHHHHHTT-
T ss_pred             HHHhccCCCCcEEEECC--CCChHHhhhhHHHCCC
Confidence            4333  68999999984  2234444444444443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.44  E-value=7e-07  Score=87.45  Aligned_cols=107  Identities=13%  Similarity=0.212  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHhcCCcEEEECCCCcccc----------cccccCCHHHHHhh---CCeeEEecCCChHhhhccCHHHHhhc
Q 021361          155 IGTAIAKRVEAFGCPISYHSRSEKSDA----------NYKYYTNIIDLASN---CQILIVACSLTEETHHIVNRKVIDAL  221 (313)
Q Consensus       155 iG~~~a~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~~l~~~---aDvv~l~~p~~~~t~~~i~~~~l~~m  221 (313)
                      ||+.||+.|...|++|.+|||++++..          +...+.+++++++.   +|+|++++|..+.++.+++ +.+..|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~-~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE-QLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH-HHHhcC
Confidence            799999999999999999999876421          24456799999885   8999999999999998884 588999


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361          222 GPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP  262 (313)
Q Consensus       222 k~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP  262 (313)
                      .+|.++||.|....-|...+.+.+++..+.....=|...++
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            99999999999999999999999999888855555666554

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.44  E-value=8.4e-07  Score=80.54  Aligned_cols=97  Identities=14%  Similarity=0.257  Sum_probs=73.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCc---EEEECCCCcccc-------cccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCP---ISYHSRSEKSDA-------NYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~---V~~~~~~~~~~~-------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      +|||||+|+||+.+++.|...|..   +.+++|+.++..       +...+.+.+++++++|+|++++| ......++..
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~   80 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA   80 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence            699999999999999999987854   578888765321       23345688899999999999999 4445555432


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          216 KVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                        +. ++++.++|.+.  .-+..+.|.+.+..+
T Consensus        81 --l~-~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         81 --LR-FRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             --hc-cCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence              22 57889999987  448888888887654

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.43  E-value=1.7e-06  Score=83.28  Aligned_cols=122  Identities=10%  Similarity=0.133  Sum_probs=86.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc---------------------cccc--cCCHHHHHhhCCeeEEe
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA---------------------NYKY--YTNIIDLASNCQILIVA  202 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------------------~~~~--~~~l~~l~~~aDvv~l~  202 (313)
                      +|+|||+|.||..+|..+. .|++|++||++.++..                     ....  ..+..++.++||+|++|
T Consensus         2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~   80 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA   80 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence            6999999999999997776 4999999999875421                     1111  23367788999999999


Q ss_pred             cCCChH----------hhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCc----cc
Q 021361          203 CSLTEE----------THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE----QM  268 (313)
Q Consensus       203 ~p~~~~----------t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~----~l  268 (313)
                      +|...+          .+..+ +.... +++|.++|+.|.-.+=-.+.+.+.+.+..+.      |.+|...+.    .+
T Consensus        81 Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d~  152 (388)
T PRK15057         81 TPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYDN  152 (388)
T ss_pred             CCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCcccccc
Confidence            996521          12222 23344 7999999999999988888888887654332      366765443    35


Q ss_pred             CCCCcEEE
Q 021361          269 LGLNNVVL  276 (313)
Q Consensus       269 ~~~pnvi~  276 (313)
                      ...|++++
T Consensus       153 ~~p~rvv~  160 (388)
T PRK15057        153 LHPSRIVI  160 (388)
T ss_pred             cCCCEEEE
Confidence            55666654

>PRK07680 late competence protein ComER; Validated

Probab=98.43  E-value=1.1e-06  Score=80.56  Aligned_cols=97  Identities=15%  Similarity=0.295  Sum_probs=73.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC----cEEEECCCCccc-------ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC----PISYHSRSEKSD-------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~-------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      +|||||+|.||+.+++.|...|.    +|.+++|+.++.       .+.....+..+++.++|+|++++|. .....++ 
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl-   79 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL-   79 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH-
Confidence            69999999999999999998883    689999986432       1333456788889999999999973 3445444 


Q ss_pred             HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361          215 RKVIDALGPSGILINIGRGAHIDEPELVSALL  246 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~  246 (313)
                      ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            3355667888999999854  37777776654

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.42  E-value=1.9e-06  Score=89.52  Aligned_cols=130  Identities=17%  Similarity=0.218  Sum_probs=89.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC--CcEEEECCCCccc-----cccc--ccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG--CPISYHSRSEKSD-----ANYK--YYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~-----~~~~--~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      ++|||||+|.||.++++.++..|  .+|++||++.+..     .+..  ...+++++++++|+|++++|.. ....++. 
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~-   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA-   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-
Confidence            68999999999999999999988  4799999986542     1221  2356888899999999999953 4444443 


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC----------CcccCCCCcEEEcCCCC
Q 021361          216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV----------PEQMLGLNNVVLLPHVG  281 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~----------~~~l~~~pnvi~TPHia  281 (313)
                      +..+.++++.++++++..+..-.+.+.+.+....+     .+..+-|..          ...|+.-.+++++|+-.
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~  152 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAE  152 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCC
Confidence            34456788999999987654445555555543222     222344421          12477788899999754

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.41  E-value=3.1e-06  Score=78.07  Aligned_cols=136  Identities=17%  Similarity=0.223  Sum_probs=97.9

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHh-hCCeeEEecCCChHhhhccCHHHH
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLAS-NCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~-~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      -++|||||+|++|+-+|+.+...|+.+..++|+....    .+...++.+.++++ .+|+|.+|+.. .++..++..--+
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf  130 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF  130 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence            4689999999999999999999999999999987433    34455678888886 59999999863 244545544456


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCC
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVG  281 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia  281 (313)
                      +++|.|++|+++-.-+...-+++.+-|-+.--.-..=-.|.++. .++....+|=|++-=.++
T Consensus       131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPks-vnh~wqglpfVydkvRig  192 (480)
T KOG2380|consen  131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKS-VNHEWQGLPFVYDKVRIG  192 (480)
T ss_pred             hhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCc-CCCccccCceEEEEeecc
Confidence            77999999999998888888888888865432223333344442 233455577666655444

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.38  E-value=4.2e-06  Score=82.60  Aligned_cols=177  Identities=13%  Similarity=0.223  Sum_probs=106.7

Q ss_pred             CceEEEeeCCCCCCHHHhhcCC-CceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCC----------cHHHHHHHHHHHH
Q 021361           45 AIRAVVGDTKCGADAELIDSLP-TLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVL----------TDDVADLAVGLVL  113 (313)
Q Consensus        45 ~~~~i~~~~~~~~~~~~l~~~~-~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----------~~~vAE~~l~~~l  113 (313)
                      ++|+|+.-..+  +.+.++.++ +--+|....-..|.=-++.+.+++|.+.......          -.++|+.+=....
T Consensus        64 ~adiIlkV~~P--~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av  141 (511)
T TIGR00561        64 QSDIILKVNAP--SDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI  141 (511)
T ss_pred             cCCEEEEeCCC--CHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence            56877753332  455566665 4455555555445444678889999988743211          1233343321111


Q ss_pred             -HHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc--
Q 021361          114 -AVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY--  185 (313)
Q Consensus       114 -~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~--  185 (313)
                       ..++.+         |++............+.++.|+|+|.+|...++.++.+|.+|.++|++....     .+...  
T Consensus       142 i~Aa~~l---------gr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~  212 (511)
T TIGR00561       142 IEAAHEF---------GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE  212 (511)
T ss_pred             HHHHHHh---------hhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEe
Confidence             111111         1111110011124568999999999999999999999999999999876432     11111  


Q ss_pred             ---------------cCC----------HHHHHhhCCeeEEecCCChH-hhhccCHHHHhhcCCCcEEEEcCC
Q 021361          186 ---------------YTN----------IIDLASNCQILIVACSLTEE-THHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       186 ---------------~~~----------l~~l~~~aDvv~l~~p~~~~-t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                                     ..+          +.+.++++|+|+.++-..-. ...++.++.++.||+|+++||++-
T Consensus       213 v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       213 LDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             ccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence                           001          44556789999887721111 224788999999999999999974

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.37  E-value=3.1e-06  Score=77.77  Aligned_cols=99  Identities=15%  Similarity=0.271  Sum_probs=72.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC----CcEEEECCCCccc-------c-cccccCCHHHHHhhCCeeEEecCCChHhhhc
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG----CPISYHSRSEKSD-------A-NYKYYTNIIDLASNCQILIVACSLTEETHHI  212 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~-------~-~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~  212 (313)
                      .+|+|||+|+||+.+++.|...|    .+|.+|+|+....       . ......+..++++++|+|++++|. .....+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence            37999999999999999999887    6799998865321       1 122246788889999999999984 334443


Q ss_pred             cCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       213 i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      + .+....++++..+|.+.-|  +..+.|.+.+..
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~  112 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG  112 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            3 3344556788899998877  677788887643

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.36  E-value=1.9e-06  Score=75.10  Aligned_cols=86  Identities=24%  Similarity=0.305  Sum_probs=65.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-c------c-ccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-A------N-YKYYTNIIDLASNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-~------~-~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      ++++|+|.|+||..+|++|...|++|.+-+++..+. .      + .-...+.++..+.+|+|++++|+.....  +.++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~--v~~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD--VLAE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh--HHHH
Confidence            579999999999999999999999998886655432 1      1 1123578899999999999999843322  3455


Q ss_pred             HHhhcCCCcEEEEcCCC
Q 021361          217 VIDALGPSGILINIGRG  233 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg  233 (313)
                      ..+.+. |.++|++.-.
T Consensus        80 l~~~~~-~KIvID~tnp   95 (211)
T COG2085          80 LRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHhC-CeEEEecCCC
Confidence            666666 8999998653

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.34  E-value=3.3e-06  Score=63.64  Aligned_cols=67  Identities=24%  Similarity=0.406  Sum_probs=56.0

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhc-CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAF-GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      ..+.+++++|+|.|.+|+.+++.+... +.+|.++||                     |+++.+.+.    .+.+.++..
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~----~~~~~~~~~   73 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPA----GVPVLEEAT   73 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCC----CCCchHHHH
Confidence            457899999999999999999999998 567889988                     999998875    344555567


Q ss_pred             hhcCCCcEEEEcC
Q 021361          219 DALGPSGILINIG  231 (313)
Q Consensus       219 ~~mk~ga~~in~~  231 (313)
                      ..++++.++++++
T Consensus        74 ~~~~~~~~v~~~a   86 (86)
T cd05191          74 AKINEGAVVIDLA   86 (86)
T ss_pred             HhcCCCCEEEecC
Confidence            8899999999864

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.33  E-value=5e-07  Score=79.83  Aligned_cols=127  Identities=13%  Similarity=0.179  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHH--HhcCCcEE-EECCCCc
Q 021361          102 DDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV--EAFGCPIS-YHSRSEK  178 (313)
Q Consensus       102 ~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l--~~~g~~V~-~~~~~~~  178 (313)
                      ...++|.+..+++..|++.         .|.          ..++++|||+|.+|+.+++.+  ...|+++. ++|+.+.
T Consensus        61 ~~~~gy~v~~l~~~~~~~l---------~~~----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~  121 (213)
T PRK05472         61 KRGVGYNVEELLEFIEKIL---------GLD----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE  121 (213)
T ss_pred             CCCCCeeHHHHHHHHHHHh---------CCC----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh
Confidence            4445699999999888764         121          245899999999999999863  35788875 5676543


Q ss_pred             cc----cc--ccccCCHHHHHhh--CCeeEEecCCChHh---hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          179 SD----AN--YKYYTNIIDLASN--CQILIVACSLTEET---HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       179 ~~----~~--~~~~~~l~~l~~~--aDvv~l~~p~~~~t---~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      ..    .+  .....++.+++++  .|++++++|.....   ..+.......-|....+.+|+.+|.+|+.++|..+|..
T Consensus       122 ~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~  201 (213)
T PRK05472        122 KIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT  201 (213)
T ss_pred             hcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence            22    11  1223567788765  99999999987652   22333444455777789999999999999999999865

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.31  E-value=9.2e-06  Score=66.99  Aligned_cols=80  Identities=16%  Similarity=0.290  Sum_probs=67.7

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++||+|.|+|-+. +|+.++.+|...|+.|..+++..         .++++.+++||+|+.+++..    ++|+.+.
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~   89 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW   89 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence            5579999999999986 68999999999999999887643         26889999999999999753    5688755


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         +|||++++|++...
T Consensus        90 ---ikpGa~Vidvg~~~  103 (140)
T cd05212          90 ---IKPGATVINCSPTK  103 (140)
T ss_pred             ---cCCCCEEEEcCCCc
Confidence               78999999998665

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.29  E-value=4.5e-06  Score=70.33  Aligned_cols=81  Identities=19%  Similarity=0.390  Sum_probs=59.4

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++||++.|||-+. +|+.++.+|...|+.|..+....         .++++.+++||+|+.++.-    .++|..+ 
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G~----~~~i~~~-   96 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVGK----PNLIKAD-   96 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SSS----TT-B-GG-
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeecc----ccccccc-
Confidence            4469999999999996 99999999999999998877644         3689999999999999964    5567765 


Q ss_pred             HhhcCCCcEEEEcCCCCc
Q 021361          218 IDALGPSGILINIGRGAH  235 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~  235 (313)
                        .+|+|+++||+|.-..
T Consensus        97 --~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   97 --WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             --GS-TTEEEEE--CEEE
T ss_pred             --cccCCcEEEecCCccc
Confidence              4699999999987665

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.28  E-value=6.3e-06  Score=75.52  Aligned_cols=80  Identities=21%  Similarity=0.398  Sum_probs=66.7

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++||++.|||.|. +|+.+|.+|...|+.|+++.+..         .++++.+++||+|+.+++-    .+++..  
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvi~avG~----p~~v~~--  218 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------KNLRHHVRNADLLVVAVGK----PGFIPG--  218 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------CCHHHHHhhCCEEEEcCCC----cccccH--
Confidence            3478999999999999 99999999999999999887543         3699999999999999953    335666  


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                       +.+|+|+++||+|--.
T Consensus       219 -~~vk~gavVIDvGin~  234 (285)
T PRK10792        219 -EWIKPGAIVIDVGINR  234 (285)
T ss_pred             -HHcCCCcEEEEccccc
Confidence             4479999999998443

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.24  E-value=1.2e-05  Score=69.55  Aligned_cols=89  Identities=18%  Similarity=0.262  Sum_probs=67.6

Q ss_pred             ccccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCccc------cccccc--CC----HHHHHhhCCeeEEec
Q 021361          137 ELGSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYY--TN----IIDLASNCQILIVAC  203 (313)
Q Consensus       137 ~~~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~--~~----l~~l~~~aDvv~l~~  203 (313)
                      +.+.++.||++.|||-+. +|+.+|.+|...|+.|+.++.+....      ..-...  .+    +.+.+++||+|+.++
T Consensus        55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv  134 (197)
T cd01079          55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV  134 (197)
T ss_pred             ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence            457789999999999997 68999999999999999986432110      000011  12    778999999999999


Q ss_pred             CCChHhhhc-cCHHHHhhcCCCcEEEEcCC
Q 021361          204 SLTEETHHI-VNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       204 p~~~~t~~~-i~~~~l~~mk~ga~~in~~r  232 (313)
                      +-    .++ +..+.   .|+|+++||+|-
T Consensus       135 G~----~~~~i~~d~---ik~GavVIDVGi  157 (197)
T cd01079         135 PS----PNYKVPTEL---LKDGAICINFAS  157 (197)
T ss_pred             CC----CCCccCHHH---cCCCcEEEEcCC
Confidence            74    455 77755   689999999983

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.23  E-value=5.2e-06  Score=76.06  Aligned_cols=79  Identities=19%  Similarity=0.372  Sum_probs=66.6

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||.|. +|+.+|.+|...|+.|+++....         .++.+..++||+|+.++.-    .+++..+ 
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvv~AvG~----p~~i~~~-  224 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------DDLKKYTLDADILVVATGV----KHLIKAD-  224 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------CCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence            4478999999999999 99999999999999998887532         3689999999999998853    3567765 


Q ss_pred             HhhcCCCcEEEEcCCC
Q 021361          218 IDALGPSGILINIGRG  233 (313)
Q Consensus       218 l~~mk~ga~~in~~rg  233 (313)
                        .+|+|+++||+|--
T Consensus       225 --~vk~gavVIDvGin  238 (287)
T PRK14176        225 --MVKEGAVIFDVGIT  238 (287)
T ss_pred             --HcCCCcEEEEeccc
Confidence              47899999999854

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.21  E-value=6.8e-06  Score=75.64  Aligned_cols=80  Identities=14%  Similarity=0.301  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +..+.||++.|||.|. +|+.++..|...|+.|+++++..         .++.+.++++|+|+.+++.    .+++..+.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t---------~~L~~~~~~aDIvI~AtG~----~~~v~~~~  220 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT---------QNLPELVKQADIIVGAVGK----PELIKKDW  220 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc---------hhHHHHhccCCEEEEccCC----CCcCCHHH
Confidence            4468999999999998 99999999999999999888732         3688888999999999963    22577644


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         +|+|++++|++-..
T Consensus       221 ---lk~gavViDvg~n~  234 (283)
T PRK14192        221 ---IKQGAVVVDAGFHP  234 (283)
T ss_pred             ---cCCCCEEEEEEEee
Confidence               79999999998554

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.21  E-value=5.4e-06  Score=75.98  Aligned_cols=80  Identities=18%  Similarity=0.299  Sum_probs=67.0

Q ss_pred             ccccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-| .+|+.+|.+|...|+.|+++....         .++.+.+++||+|+.+++.    .+++..+.
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------~~l~~~~~~ADIvV~AvG~----p~~i~~~~  218 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------KDLSFYTQNADIVCVGVGK----PDLIKASM  218 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------HHHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence            457899999999999 899999999999999998875322         3578899999999999953    55778765


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         +|+|+++||+|-..
T Consensus       219 ---vk~GavVIDvGi~~  232 (285)
T PRK14191        219 ---VKKGAVVVDIGINR  232 (285)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               49999999998655

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.20  E-value=4.5e-06  Score=72.18  Aligned_cols=132  Identities=14%  Similarity=0.185  Sum_probs=78.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------------cc-------------ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------------AN-------------YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~~-------------~~~~~~l~~l~~~aDvv  199 (313)
                      .+|+|||+|-+|-.+|..|...|++|+++|..++..            .+             .....+.++.+++||++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            479999999999999999999999999999876421            00             12346788889999999


Q ss_pred             EEecCCChHhhhccC--------HHHHhhcCCCcEEEEcCCCCccCHHHHH-HHHHhCCceEEEcc-CCCCCCCCCc---
Q 021361          200 IVACSLTEETHHIVN--------RKVIDALGPSGILINIGRGAHIDEPELV-SALLEGRLAGAGLD-VYENEPEVPE---  266 (313)
Q Consensus       200 ~l~~p~~~~t~~~i~--------~~~l~~mk~ga~~in~~rg~~vd~~al~-~al~~g~~~ga~lD-V~~~EP~~~~---  266 (313)
                      ++|+|......+..|        +...+.++++.++|.-|.-.+=-.+.+. ..|++......-.+ +|-+|=+.+.   
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~  160 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI  160 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence            999984333232222        3456778999999999988876666444 44443322110111 2466665543   


Q ss_pred             -ccCCCCcEEE
Q 021361          267 -QMLGLNNVVL  276 (313)
Q Consensus       267 -~l~~~pnvi~  276 (313)
                       .+...|++++
T Consensus       161 ~d~~~~~rvV~  171 (185)
T PF03721_consen  161 EDFRNPPRVVG  171 (185)
T ss_dssp             HHHHSSSEEEE
T ss_pred             hhccCCCEEEE
Confidence             4777888874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.20  E-value=5.9e-06  Score=75.46  Aligned_cols=80  Identities=16%  Similarity=0.290  Sum_probs=67.9

Q ss_pred             ccccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++|+++.|+|.+ ..|+.+|.+|...|+.|..+.+..         .++.+.+++||+|+.+++.    .+++.++.
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk----~~lv~~~~  213 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGK----AGFITPDM  213 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCc----ccccCHHH
Confidence            447999999999999 899999999999999998876543         3689999999999999964    26788876


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         +|+|+++||+|-..
T Consensus       214 ---vk~GavVIDVgi~~  227 (279)
T PRK14178        214 ---VKPGATVIDVGINQ  227 (279)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               49999999998544

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.20  E-value=7.1e-06  Score=77.55  Aligned_cols=90  Identities=17%  Similarity=0.184  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhcCCcEEEECCCCcc----------cccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCc
Q 021361          156 GTAIAKRVEAFGCPISYHSRSEKS----------DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSG  225 (313)
Q Consensus       156 G~~~a~~l~~~g~~V~~~~~~~~~----------~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga  225 (313)
                      |..+|..|...|++|++|||+...          ..+.....+..+++++||+|++++|....++.++. +....+++++
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~-~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK-NILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH-HHHhhCCCCC
Confidence            789999999999999999997641          12344456888899999999999997655777764 6778899999


Q ss_pred             EEEEcCCCCccCH-HHHHHHHH
Q 021361          226 ILINIGRGAHIDE-PELVSALL  246 (313)
Q Consensus       226 ~~in~~rg~~vd~-~al~~al~  246 (313)
                      ++||++.+..... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999887665 55666664

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.16  E-value=5.4e-06  Score=75.55  Aligned_cols=90  Identities=18%  Similarity=0.341  Sum_probs=68.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc------cccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS------DANYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~------~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      -|+||+|+|||||+-|++=|..|+..|.+|++=-|....      ..+.+ ..+.+|+.+++|+|++-+|..-+ ..++.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q-~~vy~   92 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQ-KEVYE   92 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence            489999999999999999999999999998765444332      12333 45899999999999999996433 33555


Q ss_pred             HHHHhhcCCCcEEEEcCCC
Q 021361          215 RKVIDALGPSGILINIGRG  233 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg  233 (313)
                      .+.-..|++|+. +-.|.|
T Consensus        93 ~~I~p~Lk~G~a-L~FaHG  110 (338)
T COG0059          93 KEIAPNLKEGAA-LGFAHG  110 (338)
T ss_pred             HHhhhhhcCCce-EEeccc
Confidence            567778888874 344444

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.13  E-value=3.5e-06  Score=72.53  Aligned_cols=98  Identities=20%  Similarity=0.291  Sum_probs=70.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhhC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASNC  196 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~a  196 (313)
                      +|+|||.|.||+.+|..+...|++|..||++++...                +             .....+++++. +|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            699999999999999999999999999999875310                0             11246788888 99


Q ss_pred             CeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361          197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALL  246 (313)
Q Consensus       197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~  246 (313)
                      |+|+=++|-+-+.+.-+-++.-+.++++++|...+  +-+....|...+.
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT--Ssl~i~~la~~~~  127 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNT--SSLSISELAAALS  127 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE----SSS-HHHHHTTSS
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecC--CCCCHHHHHhccC
Confidence            99999999988888777777777788999876653  3356666766664

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=2.6e-05  Score=71.42  Aligned_cols=128  Identities=18%  Similarity=0.294  Sum_probs=88.1

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+....         .++.+..++||+|+.+++-    .+++..+.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~----~~~i~~~~  218 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT---------KDLPQVAKEADILVVATGL----AKFVKKDY  218 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence            4579999999999987 69999999999999998876432         3689999999999999964    55788765


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE  297 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~  297 (313)
                         .|+|+++||+|--.+.          +|++.   =||-.. -     .... --.+||=-||--.-+..-..+.+++
T Consensus       219 ---vk~GavVIDvGin~~~----------~gkl~---GDvdfe-~-----~~~~-a~~iTPVPGGVGpvT~a~L~~N~~~  275 (284)
T PRK14170        219 ---IKPGAIVIDVGMDRDE----------NNKLC---GDVDFD-D-----VVEE-AGFITPVPGGVGPMTITMLLANTLK  275 (284)
T ss_pred             ---cCCCCEEEEccCcccC----------CCCee---cccchH-H-----HHhh-ccEecCCCCChHHHHHHHHHHHHHH
Confidence               6899999999965531          35543   344111 0     1111 2367887777655544444444444


Q ss_pred             HHHHH
Q 021361          298 NLVAH  302 (313)
Q Consensus       298 ni~~~  302 (313)
                      -.++.
T Consensus       276 a~~~~  280 (284)
T PRK14170        276 AAKRI  280 (284)
T ss_pred             HHHHH
Confidence            44443

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.11  E-value=4.5e-06  Score=81.12  Aligned_cols=94  Identities=19%  Similarity=0.326  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCcccc------ccc--ccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSDA------NYK--YYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~------~~~--~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      .+.|++|+|||.|.||+.+++.|...| .+|++++|+.+...      +..  ...++.+.+.++|+|+.+++.   ...
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence            478999999999999999999999999 67999999875421      111  124567788899999998763   455


Q ss_pred             ccCHHHHhhcC----CCcEEEEcCCCCccC
Q 021361          212 IVNRKVIDALG----PSGILINIGRGAHID  237 (313)
Q Consensus       212 ~i~~~~l~~mk----~ga~~in~~rg~~vd  237 (313)
                      +++++.++.+.    ...+++|.+...=+|
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            78888777652    235888887543333

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.11  E-value=2.1e-05  Score=70.57  Aligned_cols=101  Identities=17%  Similarity=0.236  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcC---Cc-EEEECCC-Cccc------ccccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFG---CP-ISYHSRS-EKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g---~~-V~~~~~~-~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      ...+|||||.|.||+.+++.+...|   .+ +++++|+ .+..      .+.....+.+++++++|+|++++|.. ..+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence            3578999999999999999998766   23 6777764 2221      12334567889999999999999953 3333


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      ++ ++.-..++ +.++|.++-|  ++.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            33 22222344 6788998766  5666777766544

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.10  E-value=9.2e-06  Score=73.97  Aligned_cols=96  Identities=19%  Similarity=0.265  Sum_probs=68.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC---CcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG---CPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g---~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      .+|+|||+|.||+.+++.+...|   .+|.+++|+.+..      .+.....+.++++.++|+|++++|.. ..+.++..
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~   81 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE   81 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH
Confidence            47999999999999999999888   6799999986532      13334567888899999999999843 33433322


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361          216 KVIDALGPSGILINIGRGAHIDEPELVSALL  246 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~  246 (313)
                       ....+  +..+|.+.-|-  ..+.+.+.+.
T Consensus        82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         82 -LKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             -HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence             22333  46777776553  5667776654

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.10  E-value=6.3e-05  Score=70.97  Aligned_cols=154  Identities=16%  Similarity=0.262  Sum_probs=116.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------cccccCCHHHH---HhhCCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------NYKYYTNIIDL---ASNCQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~~l---~~~aDvv~l~~p~~~~t~~  211 (313)
                      ..||+||+|.||+.+|......|++|.+|+|+.++..          ....+.+++|+   ++.-.-|++++-.-.....
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            4699999999999999999999999999999986532          12234577776   4567788888855332344


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcC-CCCCCcHHHHHH
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLP-HVGSDTEETSKA  290 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TP-Hia~~t~~~~~~  290 (313)
                      .|+ +.+..|.+|-++|+-|-...-|...-.++|.+..|...+.-|...|--..          --| =|=|.+.++++.
T Consensus        84 ~I~-~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~----------~GPSiMpGG~~eay~~  152 (473)
T COG0362          84 VIE-QLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGAR----------HGPSIMPGGQKEAYEL  152 (473)
T ss_pred             HHH-HHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccc----------cCCCcCCCCCHHHHHH
Confidence            444 47888999999999999999999999999999999999999998886321          111 134678888876


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 021361          291 MADLVIENLVAHFSNKPLLT  310 (313)
Q Consensus       291 ~~~~~~~ni~~~~~g~~~~~  310 (313)
                      ...+ .+.|-+-..|+|=+.
T Consensus       153 v~pi-l~~IaAk~~g~pCc~  171 (473)
T COG0362         153 VAPI-LTKIAAKVDGEPCCT  171 (473)
T ss_pred             HHHH-HHHHHhhcCCCCcee
Confidence            6554 445555556776543

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=2e-05  Score=72.32  Aligned_cols=122  Identities=20%  Similarity=0.311  Sum_probs=86.3

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+....         .++.+.+++||+|+.++..    .+++..+.
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t---------~~l~~~~~~ADIvI~AvG~----p~~i~~~~  219 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT---------KNLAELTKQADILIVAVGK----PKLITADM  219 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence            4579999999999987 79999999999999998875422         3688999999999999954    45788876


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVI  296 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~  296 (313)
                      +   |+|+++||+|.-.+.          +|++   .=||-..+      .... --.+||--||--.-+..-..+.++
T Consensus       220 i---k~gavVIDvGi~~~~----------~gkl---~GDvd~e~------v~~~-a~~iTPVPGGVGpvT~a~L~~N~~  275 (284)
T PRK14190        220 V---KEGAVVIDVGVNRLE----------NGKL---CGDVDFDN------VKEK-ASYITPVPGGVGPMTITMLMHNTV  275 (284)
T ss_pred             c---CCCCEEEEeeccccC----------CCCe---eccCcHHH------Hhhh-ceEecCCCCCChHHHHHHHHHHHH
Confidence            4   899999999976531          3443   34552111      1111 246899878766544433333333

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.10  E-value=5e-06  Score=70.69  Aligned_cols=92  Identities=15%  Similarity=0.342  Sum_probs=67.0

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cc---cc-----------------------ccCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----AN---YK-----------------------YYTN  188 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~---~~-----------------------~~~~  188 (313)
                      ..+...+|.|+|.|+.|+..++.++++|++|..+|......     ..   ..                       ....
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            46788999999999999999999999999999998765421     00   00                       0124


Q ss_pred             HHHHHhhCCeeEEecC-CChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          189 IIDLASNCQILIVACS-LTEETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       189 l~~l~~~aDvv~l~~p-~~~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      +.+.++.+|+|+.++- .....-.++.++.++.||++++++|++
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            7788899999987544 344566789999999999999999986

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PLN00203 glutamyl-tRNA reductase

Probab=98.09  E-value=4.8e-06  Score=82.69  Aligned_cols=90  Identities=20%  Similarity=0.411  Sum_probs=67.9

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc-------cc----cccCCHHHHHhhCCeeEEecCCChH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA-------NY----KYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~-------~~----~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      .+.+++|+|||.|.||+.+++.|...|+ +|++++|+.+...       +.    ....++.+.+.++|+|+.++|   .
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence            4789999999999999999999999997 5999999875421       11    112456778899999999876   4


Q ss_pred             hhhccCHHHHhhcCCC-------cEEEEcCCC
Q 021361          209 THHIVNRKVIDALGPS-------GILINIGRG  233 (313)
Q Consensus       209 t~~~i~~~~l~~mk~g-------a~~in~~rg  233 (313)
                      ...++.++.++.++++       -+|||.+=.
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP  371 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP  371 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence            4567888888876432       367777643

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.09  E-value=9.6e-06  Score=71.87  Aligned_cols=87  Identities=18%  Similarity=0.241  Sum_probs=62.0

Q ss_pred             EEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcccc-------------cc--c-ccCCHHHHHhhCCeeEEecCCChH
Q 021361          146 SVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------------NY--K-YYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------------~~--~-~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      +|+||| .|.||+.+++.|...|.+|.+++|+++...             +.  . ...+..+.++++|+|++++|.. .
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-~   80 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-H   80 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-H
Confidence            699997 899999999999999999999998764321             10  0 1236678899999999999954 2


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          209 THHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                      ...++ ++.-..++ +.++|++.-|--
T Consensus        81 ~~~~l-~~l~~~l~-~~vvI~~~ngi~  105 (219)
T TIGR01915        81 VLKTL-ESLRDELS-GKLVISPVVPLA  105 (219)
T ss_pred             HHHHH-HHHHHhcc-CCEEEEeccCce
Confidence            33333 22223344 589999976643

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.08  E-value=2.2e-05  Score=77.74  Aligned_cols=178  Identities=15%  Similarity=0.238  Sum_probs=105.8

Q ss_pred             CceEEEeeCCCCCCHHHhhcCCC-ceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCC----------cHHHHHHHHHHHH
Q 021361           45 AIRAVVGDTKCGADAELIDSLPT-LEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVL----------TDDVADLAVGLVL  113 (313)
Q Consensus        45 ~~~~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----------~~~vAE~~l~~~l  113 (313)
                      ++|+|+.-..+  +.+.++.++. --++.......|.=-++.+.++||.+.......          -.+.|+.+=    
T Consensus        65 ~~diilkV~~P--~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG----  138 (509)
T PRK09424         65 QSDIILKVNAP--SDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG----  138 (509)
T ss_pred             cCCEEEEeCCC--CHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH----
Confidence            57888854332  4555676654 445565555555445678889999888732211          112333222    


Q ss_pred             HHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cccccc--
Q 021361          114 AVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYY--  186 (313)
Q Consensus       114 ~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~--  186 (313)
                        +|-+..+..  .-++.............|.+|.|+|.|.+|...++.++.+|.+|.++|++++..     .+.+..  
T Consensus       139 --y~Av~~aa~--~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i  214 (509)
T PRK09424        139 --YRAVIEAAH--EFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLEL  214 (509)
T ss_pred             --HHHHHHHHH--HhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEe
Confidence              111111111  112221111111124579999999999999999999999999999999887532     222210  


Q ss_pred             -----------------CCH--------HHHHhhCCeeEEecCCChH-hhhccCHHHHhhcCCCcEEEEcCC
Q 021361          187 -----------------TNI--------IDLASNCQILIVACSLTEE-THHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       187 -----------------~~l--------~~l~~~aDvv~l~~p~~~~-t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                                       .+.        .+.++++|+|+.+...... ...++.++.++.||+|++++++|=
T Consensus       215 ~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        215 DFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             ccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                             010        1112469999998864321 223556789999999999999974

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.08  E-value=1.2e-05  Score=73.35  Aligned_cols=101  Identities=21%  Similarity=0.268  Sum_probs=69.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhc--CCcE-EEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF--GCPI-SYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~--g~~V-~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      +|||||+|.||+.+++.+...  ++++ .++|++.+..      .+...+.++++++.++|+|+.|+|......  +.  
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~--~~--   78 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEE--VV--   78 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHH--HH--
Confidence            799999999999999998865  4664 5788876432      123346789999999999999987432211  11  


Q ss_pred             HHhhcCCCcEEEEcCCCCccCH---HHHHHHHHhCCce
Q 021361          217 VIDALGPSGILINIGRGAHIDE---PELVSALLEGRLA  251 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg~~vd~---~al~~al~~g~~~  251 (313)
                       ...++.|.-++..+.|.+.|.   +.|.++.++++..
T Consensus        79 -~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         79 -PKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             -HHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence             233455666666777887764   4677777665543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.07  E-value=3.4e-05  Score=68.81  Aligned_cols=150  Identities=15%  Similarity=0.141  Sum_probs=98.8

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCc---EEEECCCC----ccc-----------ccc--ccc-CCHHHHHhhCCe
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP---ISYHSRSE----KSD-----------ANY--KYY-TNIIDLASNCQI  198 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~---V~~~~~~~----~~~-----------~~~--~~~-~~l~~l~~~aDv  198 (313)
                      ..++++++.|+|.|.+|+.+|..|...|++   |+.+||+.    +..           ...  ... .++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            458899999999999999999999999985   99999983    221           000  011 267788889999


Q ss_pred             eEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcC
Q 021361          199 LIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLP  278 (313)
Q Consensus       199 v~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TP  278 (313)
                      |+.+.|     .+++..+.++.|+++.++...+  .+..+. +.+...+.+.. ...|-.  +.    -..+..|+++=|
T Consensus       101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~ls--nP~~e~-~~~~A~~~ga~-i~a~G~--~~----~~~Q~nn~~~fP  165 (226)
T cd05311         101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALA--NPVPEI-WPEEAKEAGAD-IVATGR--SD----FPNQVNNVLGFP  165 (226)
T ss_pred             EEeCCC-----CCCCCHHHHHhhCCCCEEEEeC--CCCCcC-CHHHHHHcCCc-EEEeCC--CC----Cccccceeeecc
Confidence            999886     4678888999999999888888  333444 44444443331 122221  11    245778999999


Q ss_pred             CCCCCcHH-----HHHHHHHHHHHHHHHHHc
Q 021361          279 HVGSDTEE-----TSKAMADLVIENLVAHFS  304 (313)
Q Consensus       279 Hia~~t~~-----~~~~~~~~~~~ni~~~~~  304 (313)
                      =++=..-.     -.+.|...+.+-+-.+..
T Consensus       166 g~~~g~~~~~~~~i~~~m~~~aa~~la~~~~  196 (226)
T cd05311         166 GIFRGALDVRATKITEEMKLAAAEAIADLAE  196 (226)
T ss_pred             hhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence            77632221     124555555555555544

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.06  E-value=1.3e-05  Score=72.80  Aligned_cols=98  Identities=22%  Similarity=0.299  Sum_probs=74.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC----CcEEEECCCCcccc------cccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG----CPISYHSRSEKSDA------NYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      .+|||||+|+||++++..|...|    .+|++.+|+.+...      +.....+.+++..++|+|++++.  |.    .-
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence            47999999999999999999988    57999999876532      22235677899999999999994  32    22


Q ss_pred             HHHHhhcC---CCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          215 RKVIDALG---PSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       215 ~~~l~~mk---~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                      .+.+..++   ++.++|.++-|  +..+.|.+.+.+.++
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~v  112 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRV  112 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCce
Confidence            34555565   68999999877  677888888763333

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=2e-05  Score=72.12  Aligned_cols=80  Identities=18%  Similarity=0.299  Sum_probs=66.6

Q ss_pred             ccccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-| .+|+.+|.+|...|+.|+.+....         .++.+..++||+|+.++.-    .+++..+.
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------~~l~~~~~~ADIvV~AvGk----p~~i~~~~  218 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------KDLKAHTKKADIVIVGVGK----PNLITEDM  218 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCc----ccccCHHH
Confidence            447999999999999 799999999999999998775432         3688999999999999953    56788765


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       219 ---vk~gavvIDvGin~  232 (281)
T PRK14183        219 ---VKEGAIVIDIGINR  232 (281)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               58999999998544

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=3.3e-05  Score=70.92  Aligned_cols=80  Identities=19%  Similarity=0.398  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+....         .++.+..++||+|+.++.-    .+++..+.
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T---------~~L~~~~~~ADIvV~AvGk----p~~i~~~~  220 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT---------HNLSSITSKADIVVAAIGS----PLKLTAEY  220 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----CCccCHHH
Confidence            3468999999999987 69999999999999998776432         3689999999999999963    46788765


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       221 ---vk~GavVIDvGin~  234 (288)
T PRK14171        221 ---FNPESIVIDVGINR  234 (288)
T ss_pred             ---cCCCCEEEEeeccc
Confidence               68999999998443

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.04  E-value=2.5e-05  Score=71.06  Aligned_cols=97  Identities=28%  Similarity=0.506  Sum_probs=66.0

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC----cEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC----PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      ..+|||||+|+||.++++.|...|.    ++++++|+.... +.....+..+++++||+|++++| ...++.++. +...
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~-~i~~   79 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL-EIKP   79 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-HHHh
Confidence            3589999999999999999987762    488998876542 22334577888899999999987 334555544 2334


Q ss_pred             hcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361          220 ALGPSGILINIGRGAHIDEPELVSALL  246 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~vd~~al~~al~  246 (313)
                      .++++ .+|.+.-|  +..+.+.+.+.
T Consensus        80 ~l~~~-~iIS~~aG--i~~~~l~~~~~  103 (260)
T PTZ00431         80 YLGSK-LLISICGG--LNLKTLEEMVG  103 (260)
T ss_pred             hccCC-EEEEEeCC--ccHHHHHHHcC
Confidence            45554 44555444  34666666553

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.04  E-value=6.1e-06  Score=75.52  Aligned_cols=91  Identities=16%  Similarity=0.282  Sum_probs=72.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------ccc------ccCCHHHHHhhCCeeEEecCCChH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------NYK------YYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~~~------~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      ....-+|.|||.|-+|..-|+.+.++|.+|...|++.++..      +.+      ....+++.+.++|+|+-++-....
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            46677899999999999999999999999999998865321      111      124688899999999987643332


Q ss_pred             -hhhccCHHHHhhcCCCcEEEEcC
Q 021361          209 -THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       209 -t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                       .-.++.++.+++||||+++||++
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEEE
Confidence             33477888999999999999985

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=4.5e-05  Score=70.36  Aligned_cols=126  Identities=16%  Similarity=0.237  Sum_probs=87.0

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+....         .++++..++||+|+.+++-    .+++..+.
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvIsAvGk----p~~i~~~~  219 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT---------QDLASITREADILVAAAGR----PNLIGAEM  219 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            4579999999999987 69999999999999998875432         3689999999999999964    45788755


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVI  296 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~  296 (313)
                         .|+|+++||+|-..+-+.+      ++|++   .=||-..+      .... --.+||--||--.-+..-..+.++
T Consensus       220 ---ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~~------v~~~-a~~iTPVPGGVGp~T~a~L~~Nl~  279 (297)
T PRK14186        220 ---VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFEE------VEPV-AAAITPVPGGVGPMTVTMLLVNTV  279 (297)
T ss_pred             ---cCCCCEEEEeccccccccc------cCCce---eCCccHHH------HHhh-ceEecCCCCCchHHHHHHHHHHHH
Confidence               6899999999966532211      13443   34552111      1111 246899878766544433333333

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=3.1e-05  Score=70.90  Aligned_cols=80  Identities=23%  Similarity=0.437  Sum_probs=66.9

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+++....         .++.+..++||+|+.+++-    .+++..+.
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~----p~~i~~~~  217 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVGV----PHFIGADA  217 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            4578999999999987 69999999999999998875432         3689999999999999964    55788765


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         +|+|+++||+|--.
T Consensus       218 ---vk~GavVIDvGin~  231 (282)
T PRK14169        218 ---VKPGAVVIDVGISR  231 (282)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               68999999998644

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.02  E-value=4.8e-05  Score=69.52  Aligned_cols=80  Identities=18%  Similarity=0.380  Sum_probs=67.1

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+....         .++.+..++||+|+.+++-    .+++..+.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T---------~~l~~~~~~ADIvIsAvGk----p~~i~~~~  219 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT---------KNLKEVCKKADILVVAIGR----PKFIDEEY  219 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence            3479999999999987 69999999999999998887532         3689999999999999964    55788765


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         .|+|+++||+|-..
T Consensus       220 ---ik~gavVIDvGin~  233 (278)
T PRK14172        220 ---VKEGAIVIDVGTSS  233 (278)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               68999999998544

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.02  E-value=1.4e-05  Score=74.68  Aligned_cols=90  Identities=20%  Similarity=0.379  Sum_probs=63.2

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCccc------ccccc--cCCHHHHHhhCCeeEEecCCChHhhhc
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSD------ANYKY--YTNIIDLASNCQILIVACSLTEETHHI  212 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~------~~~~~--~~~l~~l~~~aDvv~l~~p~~~~t~~~  212 (313)
                      +.|++|+|||.|.||+.+++.|+..| .+|.+++|+.++.      .+...  ..++.+.+.++|+|+.++|.... ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            68999999999999999999999876 4689999986532      11111  23466778899999999986544 222


Q ss_pred             cCHHHHhhc-CCCcEEEEcCCC
Q 021361          213 VNRKVIDAL-GPSGILINIGRG  233 (313)
Q Consensus       213 i~~~~l~~m-k~ga~~in~~rg  233 (313)
                      + +..++.. +++.++||.+..
T Consensus       255 ~-~~~~~~~~~~~~~viDlavP  275 (311)
T cd05213         255 V-ERAMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             H-HHHHhhCCCCCeEEEEeCCC
Confidence            2 2233322 356788888753

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=2.9e-05  Score=71.15  Aligned_cols=80  Identities=15%  Similarity=0.341  Sum_probs=67.0

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+....         .++.+..++||+|+.++.-    .+++..+.
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------~~l~~~~~~ADIvIsAvGk----~~~i~~~~  220 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------QNLPSIVRQADIIVGAVGK----PEFIKADW  220 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEeCCC----cCccCHHH
Confidence            4578999999999987 79999999999999999887533         3688999999999999854    56788755


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       221 ---ik~gavVIDvGin~  234 (284)
T PRK14177        221 ---ISEGAVLLDAGYNP  234 (284)
T ss_pred             ---cCCCCEEEEecCcc
Confidence               68999999998543

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=3.1e-05  Score=70.92  Aligned_cols=80  Identities=16%  Similarity=0.316  Sum_probs=67.1

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+....         .++++..++||+|+.++.-    .+++..+.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvGk----p~~i~~~~  218 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSDM  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence            4578999999999987 69999999999999998877543         3699999999999999964    56788765


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       219 ---vk~GavVIDvGin~  232 (282)
T PRK14166        219 ---VKEGVIVVDVGINR  232 (282)
T ss_pred             ---cCCCCEEEEecccc
Confidence               68999999998543

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=3.5e-05  Score=70.76  Aligned_cols=135  Identities=17%  Similarity=0.257  Sum_probs=90.8

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+....         .++++..++||+|+.++.-    .+++..+.
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvGk----p~~i~~~~  216 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVGR----PHLITPEM  216 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence            4579999999999986 79999999999999998776533         3689999999999999954    46788765


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE  297 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~  297 (313)
                         .|+|+++||+|--.+.+        ++|+.. ..=||- .+      .... --.+||==||--.-+..-+.+.++.
T Consensus       217 ---vk~GavVIDVGin~~~~--------~~gk~~-l~GDVd-~~------v~~~-a~~iTPVPGGVGp~T~a~L~~N~~~  276 (287)
T PRK14173        217 ---VRPGAVVVDVGINRVGG--------NGGRDI-LTGDVH-PE------VAEV-AGALTPVPGGVGPMTVAMLMANTVI  276 (287)
T ss_pred             ---cCCCCEEEEccCccccC--------CCCcee-eecccc-Hh------HHhh-CcEEecCCCChhHHHHHHHHHHHHH
Confidence               58999999999765432        134411 234553 11      1111 1358887677554444444444444


Q ss_pred             HHHHHHcCC
Q 021361          298 NLVAHFSNK  306 (313)
Q Consensus       298 ni~~~~~g~  306 (313)
                      -.++...|+
T Consensus       277 a~~~~~~~~  285 (287)
T PRK14173        277 AALRRRGGR  285 (287)
T ss_pred             HHHHHccCC
Confidence            444444443

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.99  E-value=0.00016  Score=71.22  Aligned_cols=131  Identities=11%  Similarity=0.121  Sum_probs=89.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc--CCcEEEECCCCccc------------cc------------ccccCCHHHHHhhCCe
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF--GCPISYHSRSEKSD------------AN------------YKYYTNIIDLASNCQI  198 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~------------~~------------~~~~~~l~~l~~~aDv  198 (313)
                      .+|+|||+|.+|..+|..|...  |++|+++|...+..            .+            ..+.++.++.+++||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            4799999999999999999966  58899999766421            00            1123567788999999


Q ss_pred             eEEecCCChH-----------hhhcc--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEcc-CCCCCCCC
Q 021361          199 LIVACSLTEE-----------THHIV--NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLD-VYENEPEV  264 (313)
Q Consensus       199 v~l~~p~~~~-----------t~~~i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lD-V~~~EP~~  264 (313)
                      +++|+|....           ...+.  .+..-+.+++|.++|.-|.-.+=-.+.+...+.+.. .|.-.. +|.+|-+.
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~  160 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA  160 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence            9999973221           11222  134556689999999999877777778888877631 111111 25667665


Q ss_pred             Cc----ccCCCCcEEE
Q 021361          265 PE----QMLGLNNVVL  276 (313)
Q Consensus       265 ~~----~l~~~pnvi~  276 (313)
                      +.    .+...|+|++
T Consensus       161 ~G~a~~d~~~p~riVi  176 (473)
T PLN02353        161 EGTAIEDLFKPDRVLI  176 (473)
T ss_pred             CCCcccccCCCCEEEE
Confidence            53    4777788875

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.99  E-value=2.2e-05  Score=72.97  Aligned_cols=91  Identities=20%  Similarity=0.356  Sum_probs=69.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------------------ccccccCCHHHHHhhCCeeEEecCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------------------ANYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------------------~~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .+|+|||.|..|.++|+.|...|.+|..|.|.++..                   .......++.++++.||+|++.+|.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            589999999999999999999999999998864310                   1123457899999999999999995


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCCCccC
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRGAHID  237 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd  237 (313)
                       ...+..+.. .-..++++..+|+++.|=-.+
T Consensus        82 -~~~r~v~~~-l~~~l~~~~~iv~~sKGie~~  111 (329)
T COG0240          82 -QALREVLRQ-LKPLLLKDAIIVSATKGLEPE  111 (329)
T ss_pred             -HHHHHHHHH-HhhhccCCCeEEEEeccccCC
Confidence             233333332 235578999999999875443

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=4.1e-05  Score=70.09  Aligned_cols=79  Identities=19%  Similarity=0.350  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+....         .++.+..++||+|+.+++-    .+++..+.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvGk----p~~i~~~~  219 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVGK----PNFITADM  219 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccCC----cCcCCHHH
Confidence            4579999999999987 79999999999999998876533         3688899999999999964    55688755


Q ss_pred             HhhcCCCcEEEEcCCC
Q 021361          218 IDALGPSGILINIGRG  233 (313)
Q Consensus       218 l~~mk~ga~~in~~rg  233 (313)
                         .|+|+++||+|-.
T Consensus       220 ---vk~gavVIDvGin  232 (282)
T PRK14180        220 ---VKEGAVVIDVGIN  232 (282)
T ss_pred             ---cCCCcEEEEeccc
Confidence               6899999999843

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.97  E-value=2.5e-05  Score=73.68  Aligned_cols=102  Identities=16%  Similarity=0.289  Sum_probs=72.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----cccc-----------------ccCCHHHHHhhCCeeEEec
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYK-----------------YYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~-----------------~~~~l~~l~~~aDvv~l~~  203 (313)
                      .+|+|||.|.||..+|..|...|++|.+++|+....    .+..                 ...+. +.++.+|+|++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence            479999999999999999999999999999865311    1110                 12234 5678999999999


Q ss_pred             CCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          204 SLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       204 p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                      +.. .....+ ......++++.+++.+.- ++-..+.+.+.+.+.++
T Consensus        82 k~~-~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~  125 (341)
T PRK08229         82 KSA-ATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATV  125 (341)
T ss_pred             cCc-chHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcE
Confidence            854 444444 345666788999888854 34455667777665544

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.97  E-value=3.6e-05  Score=71.04  Aligned_cols=136  Identities=16%  Similarity=0.178  Sum_probs=92.4

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+....         .++++.+++||+|+.++.-    .+++..+.
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T---------~nl~~~~~~ADIvv~AvGk----~~~i~~~~  228 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT---------PDPESIVREADIVIAAAGQ----AMMIKGDW  228 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence            4579999999999987 69999999999999999886432         3689999999999999854    46788765


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE  297 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~  297 (313)
                         .|+|+++||+|--..-+.     ...+|.  ...=||-..+-      . ..--.+||=-||--.-+..-..+.+++
T Consensus       229 ---vk~gavVIDvGin~~~~~-----~~~~g~--kl~GDvd~e~v------~-~~a~~iTPVPGGVGp~T~a~L~~N~v~  291 (299)
T PLN02516        229 ---IKPGAAVIDVGTNAVSDP-----SKKSGY--RLVGDVDFAEV------S-KVAGWITPVPGGVGPMTVAMLLKNTVD  291 (299)
T ss_pred             ---cCCCCEEEEeeccccCcc-----cccCCC--ceEcCcChHHh------h-hhceEecCCCCCchHHHHHHHHHHHHH
Confidence               689999999985442211     111231  13456632111      0 012358998777666555555555555


Q ss_pred             HHHHHHc
Q 021361          298 NLVAHFS  304 (313)
Q Consensus       298 ni~~~~~  304 (313)
                      -.+++++
T Consensus       292 a~~~~~~  298 (299)
T PLN02516        292 GAKRVFA  298 (299)
T ss_pred             HHHHHhh
Confidence            5555553

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=4.3e-05  Score=70.33  Aligned_cols=80  Identities=19%  Similarity=0.385  Sum_probs=67.2

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+....         .++.+..++||+|+.++.-    .+++..+.
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvGk----p~~i~~~~  221 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVGI----PNFVKYSW  221 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            4579999999999987 69999999999999998877533         3689999999999999964    55788766


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         .|+|+++||+|-..
T Consensus       222 ---ik~gaiVIDVGin~  235 (294)
T PRK14187        222 ---IKKGAIVIDVGINS  235 (294)
T ss_pred             ---cCCCCEEEEecccc
Confidence               57999999998544

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.96  E-value=1.6e-05  Score=77.43  Aligned_cols=89  Identities=19%  Similarity=0.365  Sum_probs=64.3

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc------ccc--ccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA------NYK--YYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~------~~~--~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      .+.|++|+|||.|.||+.+++.|...|+ +|++++|+.+...      +..  ...++.+.+.++|+|+.++|..   ..
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence            3789999999999999999999999998 6999999865421      111  1234556778899999887643   34


Q ss_pred             ccCHHHHhhc-----CCCcEEEEcCC
Q 021361          212 IVNRKVIDAL-----GPSGILINIGR  232 (313)
Q Consensus       212 ~i~~~~l~~m-----k~ga~~in~~r  232 (313)
                      ++..+.++.+     +.+.++||.+-
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            5666666543     24567777764

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.95  E-value=5e-05  Score=69.49  Aligned_cols=80  Identities=15%  Similarity=0.246  Sum_probs=67.0

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+....         .++++..++||+|+.+++-    .+++..+.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T---------~nl~~~~~~ADIvI~AvGk----~~~i~~~~  218 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT---------ADLAGEVGRADILVAAIGK----AELVKGAW  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence            3468999999999987 69999999999999998876532         3688999999999999963    56788765


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         .|+|+++||+|-..
T Consensus       219 ---ik~gaiVIDvGin~  232 (282)
T PRK14182        219 ---VKEGAVVIDVGMNR  232 (282)
T ss_pred             ---cCCCCEEEEeecee
Confidence               68999999998554

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.93  E-value=4.7e-05  Score=71.30  Aligned_cols=80  Identities=18%  Similarity=0.378  Sum_probs=66.8

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|..+....         .++++..++||+|+.++.-    .+++..+.
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvGk----p~~v~~d~  275 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAGI----PNLVRGSW  275 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            4579999999999987 69999999999999998776433         3688999999999999964    56788765


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         +|+|+++||+|--.
T Consensus       276 ---vk~GavVIDVGin~  289 (345)
T PLN02897        276 ---LKPGAVVIDVGTTP  289 (345)
T ss_pred             ---cCCCCEEEEccccc
Confidence               68999999998544

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.93  E-value=5.1e-05  Score=71.00  Aligned_cols=86  Identities=17%  Similarity=0.181  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHh-cC-CcEEEECCCCcccc---------c--ccccCCHHHHHhhCCeeEEecCCChHh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEA-FG-CPISYHSRSEKSDA---------N--YKYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~---------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      ..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|++++..         +  ...+.++++.+++||+|++++|.+   
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence            46799999999999999986654 45 56999999875421         1  223468899999999998888754   


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      ..++..   +.++||+.+.-++...
T Consensus       201 ~pvl~~---~~l~~g~~i~~ig~~~  222 (314)
T PRK06141        201 EPLVRG---EWLKPGTHLDLVGNFT  222 (314)
T ss_pred             CCEecH---HHcCCCCEEEeeCCCC
Confidence            456665   3479999655555433

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.93  E-value=3.7e-05  Score=72.70  Aligned_cols=89  Identities=21%  Similarity=0.268  Sum_probs=65.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcC--------CcEEEECCCC-----cc-------------ccc------ccccCCHHHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFG--------CPISYHSRSE-----KS-------------DAN------YKYYTNIIDLA  193 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g--------~~V~~~~~~~-----~~-------------~~~------~~~~~~l~~l~  193 (313)
                      +|+|||.|++|.++|..|...|        .+|..|.|..     ..             ..+      .....++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998877        8999997732     10             011      12346899999


Q ss_pred             hhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCcc
Q 021361          194 SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI  236 (313)
Q Consensus       194 ~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v  236 (313)
                      +.||+|++++|. ...+.++ .+.-..++++..+|+++.|=-.
T Consensus        81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie~  121 (342)
T TIGR03376        81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLEV  121 (342)
T ss_pred             hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCccc
Confidence            999999999985 2333333 3444567889999999987433

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.92  E-value=4.5e-05  Score=71.77  Aligned_cols=80  Identities=18%  Similarity=0.325  Sum_probs=67.0

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+....         .++++..++||+|+.++.-    .+++..+.
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T---------~nl~~~~r~ADIVIsAvGk----p~~i~~d~  292 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITREADIIISAVGQ----PNMVRGSW  292 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCcCCHHH
Confidence            4579999999999987 69999999999999998876432         3689999999999999954    56788765


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         .|+|+++||+|--.
T Consensus       293 ---vK~GAvVIDVGIn~  306 (364)
T PLN02616        293 ---IKPGAVVIDVGINP  306 (364)
T ss_pred             ---cCCCCEEEeccccc
Confidence               68999999998544

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.91  E-value=0.00012  Score=69.23  Aligned_cols=138  Identities=21%  Similarity=0.341  Sum_probs=96.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------------------------c-ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------------------------N-YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~~l~~~aDvv  199 (313)
                      .+|||||+|-||-.+|-.+...|++|+++|-.++...                        + .+...+.++ ++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence            6999999999999999999999999999998764310                        0 111233444 4499999


Q ss_pred             EEecCCChHhh-------hccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEccC---CCCCCCCC
Q 021361          200 IVACSLTEETH-------HIVN--RKVIDALGPSGILINIGRGAHIDEPELVSALLEG--RLAGAGLDV---YENEPEVP  265 (313)
Q Consensus       200 ~l~~p~~~~t~-------~~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g--~~~ga~lDV---~~~EP~~~  265 (313)
                      ++|+| ||-+.       .+.+  +...+.||+|.++|-=|.-.+=..+.+...|-+.  .+. ..-|.   |.+|-..|
T Consensus        89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P  166 (436)
T COG0677          89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP  166 (436)
T ss_pred             EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence            99999 34332       1121  3355679999999999998888888888888764  233 34564   46665544


Q ss_pred             c----ccCCCCcEEEcCCCCCCcHHHHHH
Q 021361          266 E----QMLGLNNVVLLPHVGSDTEETSKA  290 (313)
Q Consensus       266 ~----~l~~~pnvi~TPHia~~t~~~~~~  290 (313)
                      .    .+-+.|+|     |||.|..+.+.
T Consensus       167 G~~~~el~~~~kV-----IgG~tp~~~e~  190 (436)
T COG0677         167 GNVLKELVNNPKV-----IGGVTPKCAEL  190 (436)
T ss_pred             CchhhhhhcCCce-----eecCCHHHHHH
Confidence            3    46666777     47787665433

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=7e-05  Score=68.68  Aligned_cols=113  Identities=17%  Similarity=0.327  Sum_probs=82.3

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHh--cCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEA--FGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~--~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      +.++.||++.|||-+. +|+.+|.+|..  .++.|+++....         .++.+..++||+|+.++.-    .+++..
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T---------~~l~~~~k~ADIvV~AvGk----p~~i~~  219 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT---------RDLAAHTRRADIIVAAAGV----AHLVTA  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC---------CCHHHHHHhCCEEEEecCC----cCccCH
Confidence            4579999999999986 79999999987  789898876532         3699999999999999964    457887


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHH
Q 021361          216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS  288 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~  288 (313)
                      +.   +|+|+++||+|--.+          .+|++.   =||-  |-     ..... -.+||-=||--.-+.
T Consensus       220 ~~---ik~GavVIDvGin~~----------~~gkl~---GDvd--~~-----v~~~a-~~iTPVPGGVGp~T~  268 (284)
T PRK14193        220 DM---VKPGAAVLDVGVSRA----------GDGKLV---GDVH--PD-----VWEVA-GAVSPNPGGVGPMTR  268 (284)
T ss_pred             HH---cCCCCEEEEcccccc----------CCCcEE---eecC--Hh-----HHhhC-CEEeCCCCChhHHHH
Confidence            65   689999999996653          245443   3553  11     11111 258998777655443

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=6.8e-05  Score=68.80  Aligned_cols=80  Identities=15%  Similarity=0.386  Sum_probs=65.8

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhc----CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAF----GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      +.++.||++.|||-+. +|+.+|.+|...    ++.|+.+....         .++.+.+++||+|+.+++-    .+++
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T---------~~l~~~~~~ADIvV~AvG~----p~~i  214 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS---------ENLTEILKTADIIIAAIGV----PLFI  214 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence            4478999999999987 699999999987    77888775432         3699999999999999964    4678


Q ss_pred             CHHHHhhcCCCcEEEEcCCCC
Q 021361          214 NRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~  234 (313)
                      ..+.   .|+|+++||+|-..
T Consensus       215 ~~~~---ik~GavVIDvGin~  232 (287)
T PRK14181        215 KEEM---IAEKAVIVDVGTSR  232 (287)
T ss_pred             CHHH---cCCCCEEEEecccc
Confidence            8765   68999999998554

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.89  E-value=4.3e-05  Score=69.43  Aligned_cols=114  Identities=22%  Similarity=0.357  Sum_probs=83.8

Q ss_pred             ccccCCCEEEEEcCChh-HHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGRI-GTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+|+||++.|||-++| |+.++.+|...++.|.++....         .++.+..++||+|+.++-    -.+++.++.
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG----~p~~i~~d~  217 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVG----KPHFIKADM  217 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecC----Ccccccccc
Confidence            45799999999999985 8999999999999999887654         368899999999999984    366777644


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS  288 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~  288 (313)
                         .|+|+++|++|--.+-+          +++.   =||-.++-       ..-.-.+||--||--.=+.
T Consensus       218 ---vk~gavVIDVGinrv~~----------~kl~---GDVdf~~v-------~~~a~~iTPVPGGVGPmTv  265 (283)
T COG0190         218 ---VKPGAVVIDVGINRVND----------GKLV---GDVDFDSV-------KEKASAITPVPGGVGPMTV  265 (283)
T ss_pred             ---ccCCCEEEecCCccccC----------CceE---eeccHHHH-------HHhhcccCCCCCccCHHHH
Confidence               68999999998655433          4443   45532221       1123467887777655433

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.88  E-value=2.6e-05  Score=71.66  Aligned_cols=108  Identities=15%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCccccc----c------cccCCHHHHHhhCCeeEEecCCChHh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSDAN----Y------KYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~----~------~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      .+.++++.|+|.|.+|++++..|...| .+|++++|+.++...    .      ....+..+.+.++|+|+.++|..-..
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~  199 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG  199 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence            577899999999999999999999999 589999998754211    0      00013346678899999999864321


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                      ..-...-.++.++++.+++++.-.+ .. ..|++..++..+
T Consensus       200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~-T~ll~~A~~~G~  238 (278)
T PRK00258        200 ELPLPPLPLSLLRPGTIVYDMIYGP-LP-TPFLAWAKAQGA  238 (278)
T ss_pred             CCCCCCCCHHHcCCCCEEEEeecCC-CC-CHHHHHHHHCcC
Confidence            1101111234567788888887644 33 344444444433

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.84  E-value=4.9e-05  Score=65.95  Aligned_cols=94  Identities=14%  Similarity=0.154  Sum_probs=60.0

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccccc----------cc--c--c---CCHHHHHhhCCeeE
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDAN----------YK--Y--Y---TNIIDLASNCQILI  200 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~----------~~--~--~---~~l~~l~~~aDvv~  200 (313)
                      +..++++++.|+|. |.+|+.+++.|...|++|..++|+.++...          ..  .  .   .++.+.++++|+|+
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            34578999999996 999999999999999999999987542110          00  0  1   12345677788877


Q ss_pred             EecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCcc
Q 021361          201 VACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI  236 (313)
Q Consensus       201 l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v  236 (313)
                      .+.|....+  .+..  -...+++.+++|+.+...+
T Consensus       103 ~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078         103 AAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             ECCCCCcee--chhh--hcccCceeEEEEccCCCCC
Confidence            777654321  1111  1123446677776665544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=8.8e-05  Score=68.46  Aligned_cols=80  Identities=19%  Similarity=0.390  Sum_probs=64.8

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHh----cCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEA----FGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~----~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      +.++.||++.|||-+. +|+.+|.+|..    .|+.|..+....         .++.+.+++||+|+.+++.    .++|
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~----~~li  220 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGK----ARFI  220 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCc----cCcc
Confidence            3579999999999987 69999999976    577877665432         3589999999999999954    2678


Q ss_pred             CHHHHhhcCCCcEEEEcCCCC
Q 021361          214 NRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~  234 (313)
                      .++.+   |+|+++||+|-..
T Consensus       221 ~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        221 TADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             CHHHc---CCCCEEEEeeccc
Confidence            88775   9999999998544

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.82  E-value=6.9e-05  Score=68.77  Aligned_cols=79  Identities=18%  Similarity=0.361  Sum_probs=65.1

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHh----cCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEA----FGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~----~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      +.++.||++.|||-+. +|+.++.+|..    .++.|..+....         .++.+.+++||+|+.+++.    .+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG~----p~li  218 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIGR----PRFV  218 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCC----CCcC
Confidence            4578999999999987 69999999987    788887766432         3699999999999999943    5678


Q ss_pred             CHHHHhhcCCCcEEEEcCCC
Q 021361          214 NRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg  233 (313)
                      .++.+   |+|+++||+|--
T Consensus       219 ~~~~v---k~GavVIDVGi~  235 (286)
T PRK14184        219 TADMV---KPGAVVVDVGIN  235 (286)
T ss_pred             CHHHc---CCCCEEEEeeee
Confidence            87665   999999999843

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.82  E-value=4.5e-05  Score=71.70  Aligned_cols=85  Identities=19%  Similarity=0.281  Sum_probs=64.6

Q ss_pred             CCEEEEEcCChhHHHHHHHHHh-c-CCcEEEECCCCcccc---------c--ccccCCHHHHHhhCCeeEEecCCChHhh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEA-F-GCPISYHSRSEKSDA---------N--YKYYTNIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~-~-g~~V~~~~~~~~~~~---------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      -+++||||.|.+|+..++.+.. + ..+|.+|||+.++..         +  ...+.+.++++++||+|++|+|.   ..
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~  204 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence            4689999999999997777653 2 346899999876421         2  23357899999999999999985   34


Q ss_pred             hccCHHHHhhcCCCcEEEEcCCCC
Q 021361          211 HIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      .++..+.   +|||+.+..+|...
T Consensus       205 P~~~~~~---l~~g~~v~~vGs~~  225 (325)
T TIGR02371       205 PVVKADW---VSEGTHINAIGADA  225 (325)
T ss_pred             cEecHHH---cCCCCEEEecCCCC
Confidence            5666543   69999999998543

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.82  E-value=0.00011  Score=67.64  Aligned_cols=80  Identities=18%  Similarity=0.327  Sum_probs=64.9

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhc----CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAF----GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      +.++.||++.|||-+. +|+.++.+|...    ++.|+++....         .++.+..++||+|+.+++-    .+++
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvGk----p~~i  218 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALGQ----PEFV  218 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence            3469999999999987 699999999876    67888775432         3689999999999999964    5567


Q ss_pred             CHHHHhhcCCCcEEEEcCCCC
Q 021361          214 NRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~  234 (313)
                      ..+.   .|+|+++||+|--.
T Consensus       219 ~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        219 KADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             CHHH---cCCCCEEEEecCcc
Confidence            7754   68999999998644

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.81  E-value=9.3e-05  Score=68.30  Aligned_cols=135  Identities=19%  Similarity=0.250  Sum_probs=89.3

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhc----CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAF----GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      +.++.||++.|||-+. +|+.+|.+|...    ++.|+.+....         .++.+..++||+|+.++.-    .+++
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T---------~~l~~~~~~ADIvVsAvGk----p~~i  222 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS---------KNLARHCQRADILIVAAGV----PNLV  222 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC---------cCHHHHHhhCCEEEEecCC----cCcc
Confidence            4579999999999987 799999999876    68888765432         3688999999999999853    5578


Q ss_pred             CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHH
Q 021361          214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMAD  293 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~  293 (313)
                      ..+.   .|+|+++||+|-..+.+.      ..+|+.. ..=||-..      ..... --.+||=-||--.-+..-+.+
T Consensus       223 ~~~~---ik~gavVIDvGin~~~~~------~~~g~~~-~~GDVdfe------~v~~~-a~~iTPVPGGVGp~T~a~L~~  285 (297)
T PRK14168        223 KPEW---IKPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDFD------AVKEI-AGKITPVPGGVGPMTIAMLMR  285 (297)
T ss_pred             CHHH---cCCCCEEEecCCCccCcc------ccCCCcc-eeccccHH------HHHhh-ccEecCCCCCchHHHHHHHHH
Confidence            8765   689999999996543211      1234311 23455211      11111 135888777766555555555


Q ss_pred             HHHHHHHHHH
Q 021361          294 LVIENLVAHF  303 (313)
Q Consensus       294 ~~~~ni~~~~  303 (313)
                      .+++..++|+
T Consensus       286 N~~~a~~~~~  295 (297)
T PRK14168        286 NTLKSAKFHL  295 (297)
T ss_pred             HHHHHHHHHh
Confidence            5555555554

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.80  E-value=9.4e-05  Score=67.67  Aligned_cols=105  Identities=13%  Similarity=0.106  Sum_probs=73.2

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc---------cccccCCHHHH-HhhCCeeEEecCCC--hHh
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA---------NYKYYTNIIDL-ASNCQILIVACSLT--EET  209 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------~~~~~~~l~~l-~~~aDvv~l~~p~~--~~t  209 (313)
                      ..+++++|+|.|.+|++++..|...|++|.+++|+.++..         +.....++++. ..++|+|+.++|..  +..
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            4578999999999999999999999999999999864321         11112234433 35799999999974  222


Q ss_pred             hh-ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          210 HH-IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       210 ~~-~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .. .+.   .+.++++.+++|+.-.+...  .|.+..++..+.
T Consensus       195 ~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~  232 (270)
T TIGR00507       195 DEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK  232 (270)
T ss_pred             CCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe
Confidence            11 222   35578999999998776533  577777666554

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.80  E-value=9.9e-05  Score=68.12  Aligned_cols=80  Identities=15%  Similarity=0.331  Sum_probs=64.7

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhc----CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAF----GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      +..+.||++.|||-+. +|+.+|.+|...    ++.|.++....         .++.+..++||+|+.++.-    .+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~~l~~~~~~ADIvIsAvGk----p~~i  218 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT---------DDLAAKTRRADIVVAAAGV----PELI  218 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence            4469999999999987 699999999865    78888765432         3688999999999998843    5578


Q ss_pred             CHHHHhhcCCCcEEEEcCCCC
Q 021361          214 NRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~  234 (313)
                      ..+.   .|+|+++||+|-..
T Consensus       219 ~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        219 DGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             CHHH---cCCCCEEEEccccc
Confidence            8755   68999999998544

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.79  E-value=8.5e-05  Score=68.74  Aligned_cols=102  Identities=17%  Similarity=0.284  Sum_probs=71.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc-----cccc-------------cccCCHHHHHhhCCeeEEecCCCh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS-----DANY-------------KYYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-----~~~~-------------~~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      +|+|||.|.||..+|..|...|.+|..++| .+.     ..+.             ....+.++....+|+|++++|.. 
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~-   79 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY-   79 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence            699999999999999999999999999998 321     0110             01235566668899999999954 


Q ss_pred             HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          208 ETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       208 ~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+...+ +.....++++.++|.+.-| +-..+.+.+.+.+.++.
T Consensus        80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            333333 3344556778888877655 44567777777665544

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.78  E-value=7.4e-05  Score=70.21  Aligned_cols=93  Identities=12%  Similarity=0.163  Sum_probs=63.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      .+.|+++.|||.|.||+.+++.|...|. +|++.+|+.....-.......-+...++|+|+.+...|......+..+.++
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~  250 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLA  250 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHh
Confidence            5899999999999999999999999996 599999987531110100111245679999998753344444566666655


Q ss_pred             hcCCCcEEEEcCCCC
Q 021361          220 ALGPSGILINIGRGA  234 (313)
Q Consensus       220 ~mk~ga~~in~~rg~  234 (313)
                      ..++ -+|||.+=..
T Consensus       251 ~~~~-r~~iDLAvPR  264 (338)
T PRK00676        251 DIPD-RIVFDFNVPR  264 (338)
T ss_pred             hccC-cEEEEecCCC
Confidence            4332 3777765333

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.77  E-value=9.5e-05  Score=70.50  Aligned_cols=91  Identities=15%  Similarity=0.231  Sum_probs=64.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC-------CcEEEECCCCcc----c--------------cc------ccccCCHHHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG-------CPISYHSRSEKS----D--------------AN------YKYYTNIIDLA  193 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g-------~~V~~~~~~~~~----~--------------~~------~~~~~~l~~l~  193 (313)
                      .+|+|||.|++|.++|..|...|       .+|..|.|.++.    .              .+      .....++++++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            58999999999999999998766       788888776631    0              11      12246788999


Q ss_pred             hhCCeeEEecCCChHhhhccCHHHHh--hcCCCcEEEEcCCCCccC
Q 021361          194 SNCQILIVACSLTEETHHIVNRKVID--ALGPSGILINIGRGAHID  237 (313)
Q Consensus       194 ~~aDvv~l~~p~~~~t~~~i~~~~l~--~mk~ga~~in~~rg~~vd  237 (313)
                      +.||+|++++|.. ..+.++. +.-.  .+++++++|+++.|=-.+
T Consensus        92 ~~aDiIvlAVPsq-~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         92 EDADLLIFVIPHQ-FLESVLS-QIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             hcCCEEEEEcChH-HHHHHHH-HhccccccCCCCEEEEEeCCcccC
Confidence            9999999999852 3333332 2223  466678999998774433

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.77  E-value=0.00017  Score=66.52  Aligned_cols=102  Identities=17%  Similarity=0.217  Sum_probs=70.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccc-----------cccCCHHHHHhhCCeeEEecCCChHh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANY-----------KYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~-----------~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      +|+|||.|.||..+|..|...|.+|..++|+.+..     .+.           ....+..++ +.+|+|++++|.. ++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~~   79 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-QL   79 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-cH
Confidence            69999999999999999999999999999854321     121           112345555 8899999999954 34


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ...+. .....+.+++.+|...-| +-.++.+.+.+...++.
T Consensus        80 ~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         80 PAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             HHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            43332 344556777888887776 33456666666555554

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.73  E-value=0.00016  Score=63.26  Aligned_cols=95  Identities=17%  Similarity=0.221  Sum_probs=70.1

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC---Ccc---------ccc-----------------cc--c--
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS---EKS---------DAN-----------------YK--Y--  185 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~---~~~---------~~~-----------------~~--~--  185 (313)
                      ..|+.++|+|+|.|.+|..+|+.|...|. ++..+|+.   .+.         ..+                 ..  .  
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            46889999999999999999999999999 58888876   211         000                 00  0  


Q ss_pred             ----cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          186 ----YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       186 ----~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                          ..+++++++++|+|+-+ ..+.+++.++.......++...++...+-++.
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~  149 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASGLAGY  149 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEeccccC
Confidence                12355678899999988 57888998888888888877666665444443

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.72  E-value=8.3e-05  Score=65.24  Aligned_cols=93  Identities=25%  Similarity=0.264  Sum_probs=65.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhc--CCc-EEEECCCCcccc------cccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF--GCP-ISYHSRSEKSDA------NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~--g~~-V~~~~~~~~~~~------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      +|||||+|.||+.+.+.++.-  .++ +.+||++.++..      +.....++++++++.|+++=|..- ...+ -+   
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~-e~---   76 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVR-EY---   76 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHH-HH---
Confidence            799999999999999999843  455 678999886542      122347899999999999987742 2222 12   


Q ss_pred             HHhhcCCCcEEEEcCCCCccCHHHHHH
Q 021361          217 VIDALGPSGILINIGRGAHIDEPELVS  243 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg~~vd~~al~~  243 (313)
                      ..+.|+.|--+|-+|-|.+.|+.-+.+
T Consensus        77 ~~~~L~~g~d~iV~SVGALad~~l~er  103 (255)
T COG1712          77 VPKILKAGIDVIVMSVGALADEGLRER  103 (255)
T ss_pred             hHHHHhcCCCEEEEechhccChHHHHH
Confidence            334466776677777788887765443

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.64  E-value=0.0013  Score=58.71  Aligned_cols=104  Identities=22%  Similarity=0.348  Sum_probs=69.3

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc---ccc------------------c--cccCCHHHHH-hh
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS---DAN------------------Y--KYYTNIIDLA-SN  195 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---~~~------------------~--~~~~~l~~l~-~~  195 (313)
                      .+++|++|.|.|+|++|+.+|+.|..+|++|+++..+...   +.+                  +  ....+.++++ .+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~  106 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD  106 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence            4689999999999999999999999999998854433210   000                  0  0011233333 36


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ||+++-|.+     .+.|+.+...+++ =.+++-.+-+++ . ....+.|.++.+.
T Consensus       107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~  154 (227)
T cd01076         107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL  154 (227)
T ss_pred             ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence            888887764     4567888888886 345555555665 4 5556788888776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.64  E-value=0.00013  Score=68.48  Aligned_cols=83  Identities=19%  Similarity=0.223  Sum_probs=60.1

Q ss_pred             EEEEcCChhHHHHHHHHHh-cCCcEEEE-CCCCccc------cc------------------ccccCCHHHHHhhCCeeE
Q 021361          147 VGIVGLGRIGTAIAKRVEA-FGCPISYH-SRSEKSD------AN------------------YKYYTNIIDLASNCQILI  200 (313)
Q Consensus       147 vgiiG~G~iG~~~a~~l~~-~g~~V~~~-~~~~~~~------~~------------------~~~~~~l~~l~~~aDvv~  200 (313)
                      |||+|||.||+.+++.+.. -+++|.++ |..++..      .+                  .....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999998764 46776654 4333210      01                  111346999999999999


Q ss_pred             EecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          201 VACSLTEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       201 l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      .|+|   .+.+..+++.+..|+.+++|+-.-.
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~  109 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK  109 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence            8876   4566788899999999988887543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.63  E-value=0.00032  Score=55.91  Aligned_cols=100  Identities=21%  Similarity=0.377  Sum_probs=71.5

Q ss_pred             CEEEEEc----CChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          145 KSVGIVG----LGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       145 ~~vgiiG----~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      |+|+|||    -|..|..+.+.|+..|++|+..++......+...+.+++|.-...|++++++|. +.+..++++  +..
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~~--~~~   77 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVDE--AAA   77 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHHH--HHH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHHH--HHH
Confidence            6899999    788999999999999999999999988777888888999855789999999984 334444432  233


Q ss_pred             cCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          221 LGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       221 mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +..+.+++..+    ..++++.+.+++..+.
T Consensus        78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   78 LGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            46678888887    7778888888887776

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.63  E-value=0.00021  Score=66.59  Aligned_cols=86  Identities=12%  Similarity=0.119  Sum_probs=66.1

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCcccc---------cccc-cCCHHHHHhhCCeeEEecCCChHhh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSDA---------NYKY-YTNIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~---------~~~~-~~~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      ..++++|||.|.+|+..++.+.. ++. +|.+|+|+.++..         +... +.+.+++++++|+|+.++|.+   .
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~  200 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T  200 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence            46799999999999999999864 675 5999999875421         1111 357899999999999999864   4


Q ss_pred             hccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          211 HIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                      .++..    .+|||+.++.+|.-..
T Consensus       201 Pl~~~----~~~~g~hi~~iGs~~p  221 (304)
T PRK07340        201 PVYPE----AARAGRLVVAVGAFTP  221 (304)
T ss_pred             ceeCc----cCCCCCEEEecCCCCC
Confidence            56654    2699999999995443

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.61  E-value=0.0004  Score=72.03  Aligned_cols=111  Identities=17%  Similarity=0.196  Sum_probs=81.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|+|||.|.||..+|..+...|++|+.||++.+...                +             .....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5899999999999999999999999999998875310                0             1112455 44689


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE  259 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~  259 (313)
                      ||+|+=++|-+.+.+.-+-++.=+.++++++|....  +-+....|.+.+... -..+++--|.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~p-~r~~g~Hff~  453 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNT--STISISLLAKALKRP-ENFCGMHFFN  453 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCCC-ccEEEEecCC
Confidence            999999999999988877777778889998875543  335667777776543 2223444443

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.60  E-value=0.00018  Score=68.07  Aligned_cols=87  Identities=17%  Similarity=0.294  Sum_probs=63.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------------c-c------ccccCCHHHHHhhCCeeEEecC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------------A-N------YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------------~-~------~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .+|+|||.|.+|..+|..|...| .+..|.++++..             . +      .....++++.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            57999999999999999999988 677777653210             0 1      1224577888999999999999


Q ss_pred             CChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          205 LTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      . ..++..+. +....++++..+|++..|=
T Consensus        87 s-~~~~~vl~-~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         87 S-HGFRGVLT-ELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             H-HHHHHHHH-HHHhhcCCCCEEEEEEeCC
Confidence            3 34444433 3445678888899888864

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.56  E-value=0.0002  Score=69.46  Aligned_cols=86  Identities=24%  Similarity=0.398  Sum_probs=61.1

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc------c-c--cccCCHHHHHhhCCeeEEecCCChHhh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA------N-Y--KYYTNIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~------~-~--~~~~~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      .+.|+++.|||.|.||+.+++.|...|. +|++++|+.+...      + .  ..+.++.+.+.++|+|+.|++..   .
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence            5789999999999999999999999996 5999999875321      1 1  11245567789999999998753   3


Q ss_pred             hccCHHHHhhcCCCcEEEEcC
Q 021361          211 HIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~  231 (313)
                      .+|..+...  .+.-++||.+
T Consensus       255 ~vi~~~~~~--~~~~~~iDLa  273 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDIS  273 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeC
Confidence            455554432  1224556554

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.55  E-value=0.00074  Score=63.03  Aligned_cols=155  Identities=13%  Similarity=0.183  Sum_probs=117.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc----------ccccCCHHHHH---hhCCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN----------YKYYTNIIDLA---SNCQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~----------~~~~~~l~~l~---~~aDvv~l~~p~~~~t~~  211 (313)
                      ..||+||++.||+.++......|+.|.+|+|+.++...          .--..|+++++   ++-.+|++.+-.-.....
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            46999999999999999999999999999998865321          11135788874   567888888876666666


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHH
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKA  290 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~  290 (313)
                      +|. +...+|.+|-++|+-|....-|.+.-.+.|.+..+...+.-|...|--.. .|=          -|-|.+.+++.+
T Consensus        87 ~I~-~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS----------lMpGg~~~Awp~  155 (487)
T KOG2653|consen   87 FIE-ELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS----------LMPGGSKEAWPH  155 (487)
T ss_pred             HHH-HHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc----------cCCCCChHHHHH
Confidence            665 47788999999999999999999999999999999999999998886432 221          134677888888


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 021361          291 MADLVIENLVAHFSNKPLLT  310 (313)
Q Consensus       291 ~~~~~~~ni~~~~~g~~~~~  310 (313)
                      +-.++-.---..-.|+|-+.
T Consensus       156 ik~ifq~iaakv~~~epCc~  175 (487)
T KOG2653|consen  156 IKDIFQKIAAKVSDGEPCCD  175 (487)
T ss_pred             HHHHHHHHHHHhcCCCCCee
Confidence            77766554333345555443

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.52  E-value=0.00024  Score=68.33  Aligned_cols=90  Identities=18%  Similarity=0.366  Sum_probs=65.8

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc------c--ccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA------N--YKYYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      .|.++++.|||.|.||.-+|+.|...|. +|++.+|+..+..      +  +.....+.+.+.++|+|++++.   ....
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence            4899999999999999999999999996 6899999986532      2  2224567778999999999875   3345


Q ss_pred             ccCHHHHhhc-C--CCcEEEEcCCC
Q 021361          212 IVNRKVIDAL-G--PSGILINIGRG  233 (313)
Q Consensus       212 ~i~~~~l~~m-k--~ga~~in~~rg  233 (313)
                      ++..+.+... +  ++-++||.+=.
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCC
Confidence            6666554433 1  12467777633

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.52  E-value=0.0021  Score=58.26  Aligned_cols=151  Identities=16%  Similarity=0.131  Sum_probs=89.9

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEE-CCCCc-------------------cccc------------ccccC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH-SRSEK-------------------SDAN------------YKYYT  187 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~-~~~~~-------------------~~~~------------~~~~~  187 (313)
                      .+++|++|.|-|+|++|+.+|+.|...|++|++. |.+..                   ....            .+ ..
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~  112 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YF  112 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-Ee
Confidence            4689999999999999999999999999998844 42110                   0000            11 11


Q ss_pred             CHHHHH-hhCCeeEEecCCChHhhhccCHHHHhhcC--CCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC
Q 021361          188 NIIDLA-SNCQILIVACSLTEETHHIVNRKVIDALG--PSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV  264 (313)
Q Consensus       188 ~l~~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~~mk--~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~  264 (313)
                      +.++++ ..||+++-|.     +.+.|+.+..++++  .=.+++-.+-+++-+  +-.+.|.++.+. ++=|+.-+-=-.
T Consensus       113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~-vvPD~laNaGGV  184 (254)
T cd05313         113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL-FAPGKAANAGGV  184 (254)
T ss_pred             CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE-EECchhhcCCCe
Confidence            344443 3699887654     57789999888884  334666666777644  455778887776 333332221100


Q ss_pred             C-c--ccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 021361          265 P-E--QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFS  304 (313)
Q Consensus       265 ~-~--~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~  304 (313)
                      - +  ++.+  |   .-|..|.-.+..+++.+.+.+..++.++
T Consensus       185 ivs~~E~~q--n---~~~~~w~~e~V~~~l~~~m~~~~~~v~~  222 (254)
T cd05313         185 AVSGLEMSQ--N---SQRLSWTAEEVDAKLKDIMKNIHDACAE  222 (254)
T ss_pred             eeeHHHhhc--c---cccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            0 0  1111  1   2233444455556666666666555543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.52  E-value=0.00031  Score=65.89  Aligned_cols=87  Identities=20%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------------cc------ccccCCHHHHH-hhCCeeEEecCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------------AN------YKYYTNIIDLA-SNCQILIVACSL  205 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------------~~------~~~~~~l~~l~-~~aDvv~l~~p~  205 (313)
                      +|+|||.|.||..+|..|...|.+|..|+|+.+..             .+      .....++++.+ ..+|+|++++|.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks   81 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT   81 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence            69999999999999999999999999999865310             01      11234666766 589999999985


Q ss_pred             ChHhhhccCHHHHh-hcCCCcEEEEcCCCC
Q 021361          206 TEETHHIVNRKVID-ALGPSGILINIGRGA  234 (313)
Q Consensus       206 ~~~t~~~i~~~~l~-~mk~ga~~in~~rg~  234 (313)
                      . .+...+. +... .+++++.+|....|=
T Consensus        82 ~-~~~~~l~-~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         82 Q-QLRTICQ-QLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             H-HHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence            3 4444433 2333 567777777766663

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.51  E-value=0.0036  Score=55.51  Aligned_cols=104  Identities=15%  Similarity=0.218  Sum_probs=69.3

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEE-EECCCC----------ccc------ccccc-----cCCHHHHH-hhC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSE----------KSD------ANYKY-----YTNIIDLA-SNC  196 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~-~~~~~~----------~~~------~~~~~-----~~~l~~l~-~~a  196 (313)
                      .+|.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+.          +..      .....     ..+.++++ .+|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            46899999999999999999999999999755 455544          100      00000     01223333 379


Q ss_pred             CeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      |+++-|.+     .+.|+.+....++ -.+++-.+-+++-+  .-.+.|.+..+.
T Consensus        99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            99888775     3478888888886 45566666676655  345667666665

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.51  E-value=4.5e-05  Score=59.49  Aligned_cols=86  Identities=19%  Similarity=0.248  Sum_probs=56.6

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc-cccccc-cCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS-DANYKY-YTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~-~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      .++|++|.|||.|.+|..=++.|...|++|+++++.... ...... ...+++.+..+|+|+.+++. +.    +++...
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d-~~----~n~~i~   78 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDD-PE----LNEAIY   78 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS--HH----HHHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCC-HH----HHHHHH
Confidence            588999999999999999999999999999999988411 111111 12344557789988877753 22    344455


Q ss_pred             hhcCCCcEEEEcC
Q 021361          219 DALGPSGILINIG  231 (313)
Q Consensus       219 ~~mk~ga~~in~~  231 (313)
                      ...+.-.+++|+.
T Consensus        79 ~~a~~~~i~vn~~   91 (103)
T PF13241_consen   79 ADARARGILVNVV   91 (103)
T ss_dssp             HHHHHTTSEEEET
T ss_pred             HHHhhCCEEEEEC
Confidence            5556566777765

>PRK06046 alanine dehydrogenase; Validated

Probab=97.50  E-value=0.00039  Score=65.39  Aligned_cols=82  Identities=20%  Similarity=0.320  Sum_probs=62.5

Q ss_pred             CCEEEEEcCChhHHHHHHHHHh-cCCc-EEEECCCCcccc----------c--ccccCCHHHHHhhCCeeEEecCCChHh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEA-FGCP-ISYHSRSEKSDA----------N--YKYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~-~g~~-V~~~~~~~~~~~----------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      -+++||||.|.+|+..++.+.. .+.+ |.+|+|+.+...          +  ...+.+.+++++ +|+|++++|.+   
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence            3689999999999999998874 4554 788999875321          1  123568899887 99999999864   


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCC
Q 021361          210 HHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ..++..+.   +|+|+.+..+|.
T Consensus       205 ~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        205 KPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             CcEecHHH---cCCCCEEEecCC
Confidence            46677654   589999998884

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.48  E-value=0.00026  Score=65.28  Aligned_cols=90  Identities=16%  Similarity=0.106  Sum_probs=61.7

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-----------cc--ccCCHHHHHhhCCeeEEecCCCh
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-----------YK--YYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-----------~~--~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      ++++++.|||.|.+|++++..|...|+ +|+++||+..+...           ..  ...++.+.++++|+|+.++|.--
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm  204 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM  204 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence            567999999999999999999999998 69999998653211           00  12344556788999999988631


Q ss_pred             H-h-hhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          208 E-T-HHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       208 ~-t-~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      . . ...++.   +.++++.+++|+.-.+
T Consensus       205 ~~~~~~~~~~---~~l~~~~~v~DivY~P  230 (284)
T PRK12549        205 AKHPGLPLPA---ELLRPGLWVADIVYFP  230 (284)
T ss_pred             CCCCCCCCCH---HHcCCCcEEEEeeeCC
Confidence            1 1 111222   3456677777776554

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.48  E-value=0.00042  Score=65.16  Aligned_cols=84  Identities=12%  Similarity=0.124  Sum_probs=63.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHH-hcCC-cEEEECCCCcccc----------cc--cccCCHHHHHhhCCeeEEecCCChH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVE-AFGC-PISYHSRSEKSDA----------NY--KYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~-~~g~-~V~~~~~~~~~~~----------~~--~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      ..++++|||.|.+|+..+..+. ..+. +|.+|+|++++..          +.  ..+.+++++++++|+|++++|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            3579999999999999887764 4566 5899999875421          11  23577899999999999999864  


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          209 THHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                       ..++.    +.+|+|+.++.+|.-
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs~  223 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGSF  223 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCCC
Confidence             34554    456999999998754

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.47  E-value=0.0006  Score=61.81  Aligned_cols=99  Identities=18%  Similarity=0.230  Sum_probs=66.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc---CCcE-EEECCCCccc----ccccccCCHHHH-HhhCCeeEEecCCChHhhhccCH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF---GCPI-SYHSRSEKSD----ANYKYYTNIIDL-ASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~---g~~V-~~~~~~~~~~----~~~~~~~~l~~l-~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      ++|||||+|.||+.+++.+..-   ++++ .+++|..+..    ..+..+.+++++ ..+.|+|+=|.+-  +.-.-.. 
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~--~av~e~~-   79 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQ--QAIAEHA-   79 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCH--HHHHHHH-
Confidence            5899999999999999998753   3554 4566654322    124456789997 5789999988853  2111122 


Q ss_pred             HHHhhcCCCcEEEEcCCCCccC---HHHHHHHHHhC
Q 021361          216 KVIDALGPSGILINIGRGAHID---EPELVSALLEG  248 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd---~~al~~al~~g  248 (313)
                        .+.|+.|.-++-.|-|.+.|   .+.|.++.+++
T Consensus        80 --~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~  113 (267)
T PRK13301         80 --EGCLTAGLDMIICSAGALADDALRARLIAAAEAG  113 (267)
T ss_pred             --HHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence              23356677788888899888   45556655553

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.47  E-value=0.00029  Score=66.09  Aligned_cols=38  Identities=32%  Similarity=0.473  Sum_probs=35.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD  180 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~  180 (313)
                      .|++|+|+|+|.+|....+.++++|++|+++|++.++.
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~  203 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL  203 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH
Confidence            48999999999999999999999999999999998753

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.47  E-value=0.0024  Score=59.57  Aligned_cols=106  Identities=19%  Similarity=0.286  Sum_probs=72.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---cccc--------------ccCCHHHHHhhCCeeEEecCCCh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---ANYK--------------YYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---~~~~--------------~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      .+|+|||.|.||..+|..|...|++|.++.|+....   .+..              ...+. +....+|+|+++++...
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~~   84 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTTA   84 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCCC
Confidence            589999999999999999999999999998865221   1100              11122 24568999999998643


Q ss_pred             HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEE
Q 021361          208 ETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAG  254 (313)
Q Consensus       208 ~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~  254 (313)
                       +...+ +.....+++++.++...-| +-.++.+.+.+...++.++.
T Consensus        85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~  128 (313)
T PRK06249         85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL  128 (313)
T ss_pred             -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence             33322 2344456778888877555 45667777777766766543

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.47  E-value=0.00054  Score=64.46  Aligned_cols=84  Identities=14%  Similarity=0.164  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHH-hcCC-cEEEECCCCcccc----------cc--cccCCHHHHHhhCCeeEEecCCChH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVE-AFGC-PISYHSRSEKSDA----------NY--KYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~-~~g~-~V~~~~~~~~~~~----------~~--~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      ..++++|||.|.+|+..++.+. ..+. +|.+|+|+.++..          +.  ....++++.+++||+|+.++|.+  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--  205 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--  205 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence            3579999999999999999997 4675 5999999875421          11  22467899999999999999863  


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCC
Q 021361          209 THHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                       ..++..+.   +|+|+.+..++.
T Consensus       206 -~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       206 -TPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             -CcEecHHH---cCCCcEEEeeCC
Confidence             35666544   689998888874

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.45  E-value=0.00044  Score=65.18  Aligned_cols=95  Identities=20%  Similarity=0.345  Sum_probs=70.5

Q ss_pred             cccccCCCEEEEEcC-ChhHHHHHHHHHh-cCC-cEEEECCCCccccc------ccccCCHHHHHhhCCeeEEecCCChH
Q 021361          138 LGSKFSGKSVGIVGL-GRIGTAIAKRVEA-FGC-PISYHSRSEKSDAN------YKYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       138 ~~~~l~g~~vgiiG~-G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~~------~~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      .+..++|++|.|+|. |.||+.+++.|.. .|. +++.++|+......      .....++++.+.++|+|+.+....  
T Consensus       149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~--  226 (340)
T PRK14982        149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP--  226 (340)
T ss_pred             hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence            355789999999998 8999999999974 564 78889987543211      111246778999999888766432  


Q ss_pred             hhh-ccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361          209 THH-IVNRKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       209 t~~-~i~~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                       .. .++.+.   ++++.++||.|+..=||.
T Consensus       227 -~~~~I~~~~---l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        227 -KGVEIDPET---LKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             -cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence             34 377754   489999999999887774

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.45  E-value=0.0015  Score=60.61  Aligned_cols=115  Identities=21%  Similarity=0.222  Sum_probs=80.6

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------------cc-------------ccccCCHHHHHh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------------AN-------------YKYYTNIIDLAS  194 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------------~~-------------~~~~~~l~~l~~  194 (313)
                      -++|||||.|.||+.+|..+..-|++|..+|++.+..                .+             .....++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            4799999999999999999999779999999985421                00             00112233 688


Q ss_pred             hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361          195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP  262 (313)
Q Consensus       195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP  262 (313)
                      +||+|+=++|-+-+.++-+-++.=...+|+++|=.-.++  +...++.++++.. =...++=-|.+-|
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rp-er~iG~HFfNP~~  146 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALKRP-ERFIGLHFFNPVP  146 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCc-hhEEEEeccCCCC
Confidence            999999999999898887777676778899987543222  5567777777433 2234444444333

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.45  E-value=0.0007  Score=70.38  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=82.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|+|||.|.||..+|..+...|++|..+|++++...                +             .....+++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5899999999999999999999999999998875310                0             11124554 5689


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE  259 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~  259 (313)
                      ||+|+=++|-+-+.+.-+-++.=+.++++++|...  -+-++...|.+.++... ..+++--|.
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~p~-r~ig~Hff~  475 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSRPE-KVIGMHYFS  475 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCCcc-ceEEEeccC
Confidence            99999999999898887777777889999987643  33466777777765432 234555554

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.43  E-value=0.00034  Score=65.49  Aligned_cols=87  Identities=16%  Similarity=0.196  Sum_probs=55.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCccc--------c-c--ccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSD--------A-N--YKYYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~--------~-~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      +++||||.|..|+.-++.+.. ++. +|.+|+|+++..        . +  ...+.+.++++++||+|+.++|.+..+ .
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P  207 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P  207 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence            589999999999998888764 666 599999987532        1 1  223678999999999999988865432 6


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          212 IVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                      +++.+   .++||+.++.+|....
T Consensus       208 ~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  208 VFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             SB-GG---GS-TT-EEEE-S-SST
T ss_pred             cccHH---HcCCCcEEEEecCCCC
Confidence            77765   4789999999997654

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.39  E-value=0.0012  Score=68.35  Aligned_cols=111  Identities=18%  Similarity=0.196  Sum_probs=79.3

Q ss_pred             CEEEEEcCChhHHHHHHHHH-hcCCcEEEECCCCccc----------------cc-------------ccccCCHHHHHh
Q 021361          145 KSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSD----------------AN-------------YKYYTNIIDLAS  194 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~-~~g~~V~~~~~~~~~~----------------~~-------------~~~~~~l~~l~~  194 (313)
                      ++|+|||.|.||+.+|..+. ..|++|..||++++..                .+             .....++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            58999999999999999987 5899999999886421                00             0112455 4578


Q ss_pred             hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361          195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE  259 (313)
Q Consensus       195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~  259 (313)
                      +||+|+=++|-+.+.+.-+-++.=+.++++++|....  +-+....|.+.++... ..+++--|.
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~p~-r~~g~Hffn  445 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASRPE-NVIGLHYFS  445 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCCcc-cEEEEecCC
Confidence            9999999999998888877777777789998876433  3356667777764322 224444443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.38  E-value=0.00055  Score=67.74  Aligned_cols=100  Identities=14%  Similarity=0.157  Sum_probs=64.7

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccc----c-ccCCHHHH--HhhCCeeEEecCCChHhhh
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY----K-YYTNIIDL--ASNCQILIVACSLTEETHH  211 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~----~-~~~~l~~l--~~~aDvv~l~~p~~~~t~~  211 (313)
                      +..++|++++|+|.|.+|++++..|...|++|.+++|+..+....    . ...+.+++  +.++|+|++|+|..-.   
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~---  403 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT---  403 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence            446789999999999999999999999999999999876432110    0 11122332  4689999999987532   


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                       +.. .+   .  .+++++.-.+....  |.++.++..+
T Consensus       404 -~~~-~l---~--~~v~D~~Y~P~~T~--ll~~A~~~G~  433 (477)
T PRK09310        404 -IPK-AF---P--PCVVDINTLPKHSP--YTQYARSQGS  433 (477)
T ss_pred             -chh-HH---h--hhEEeccCCCCCCH--HHHHHHHCcC
Confidence             111 11   1  26667666553322  5555555443

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.38  E-value=0.0012  Score=68.47  Aligned_cols=100  Identities=21%  Similarity=0.202  Sum_probs=76.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|+|||.|.||..+|..+...|++|..+|++.+...                +             .....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5899999999999999999999999999998865310                0             1112345 34689


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      ||+|+=++|-+-+.+.-+-++.=+.++|+++|-...  +-++...|...++.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnT--S~l~i~~ia~~~~~  442 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNT--STISISLLAKALKR  442 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHhhcCC
Confidence            999999999988888877777778889999876543  33666777777654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02477 glutamate dehydrogenase

Probab=97.37  E-value=0.0043  Score=60.04  Aligned_cols=105  Identities=16%  Similarity=0.278  Sum_probs=72.3

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEE-ECCCCcc--cc------------------ccc--ccCCHHHH-Hh
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY-HSRSEKS--DA------------------NYK--YYTNIIDL-AS  194 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~-~~~~~~~--~~------------------~~~--~~~~l~~l-~~  194 (313)
                      +.+|.|++|.|.|+|++|+.+|+.|...|++|++ .|.+..-  ..                  +..  ...+.+++ ..
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~  280 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE  280 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence            4578999999999999999999999999999884 4443110  00                  000  01123333 34


Q ss_pred             hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .||+++-|.     ..+.|+++...+++ -.+++-.+-+++ ..+ -.+.|.+..+.
T Consensus       281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~  329 (410)
T PLN02477        281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV  329 (410)
T ss_pred             cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence            789887654     35678988888885 467777777887 444 45888888776

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.36  E-value=0.0014  Score=68.07  Aligned_cols=110  Identities=16%  Similarity=0.179  Sum_probs=80.6

Q ss_pred             CEEEEEcCChhHHHHHHHHH-hcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHh
Q 021361          145 KSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLAS  194 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~-~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~  194 (313)
                      ++|+|||.|.||..+|..+. ..|++|..+|++++...                +             .....++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999988 78999999998764210                0             0112445 4578


Q ss_pred             hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCC
Q 021361          195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVY  258 (313)
Q Consensus       195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~  258 (313)
                      +||+|+=++|-+.+.+.-+-++.=+.++|+++|....  +-++...|.+.+.... ..+++--|
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnT--S~l~i~~la~~~~~p~-r~ig~Hff  449 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNT--SSLPIGQIAAAAARPE-QVIGLHYF  449 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHHhcCccc-ceEEEecC
Confidence            9999999999998888877777777899999887543  3466677777764322 22454444

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.35  E-value=0.00074  Score=63.24  Aligned_cols=83  Identities=14%  Similarity=0.256  Sum_probs=64.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCcccc---------c--ccccCCHHHHHhhCCeeEEecCCChHhh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSDA---------N--YKYYTNIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~---------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      -++++|||.|..++.-++.+.. +.. +|.+|+|++++..         +  ...+.+.++++++||+|+.+++.   +.
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~  204 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE  204 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence            4699999999999998887764 333 5999999986521         1  12256899999999999998874   45


Q ss_pred             hccCHHHHhhcCCCcEEEEcCC
Q 021361          211 HIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      .+++.+.   +|||+.++.+|.
T Consensus       205 P~~~~~~---l~~G~hi~~iGs  223 (315)
T PRK06823        205 PLLQAED---IQPGTHITAVGA  223 (315)
T ss_pred             ceeCHHH---cCCCcEEEecCC
Confidence            6777654   689999999984

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.33  E-value=0.0011  Score=60.33  Aligned_cols=120  Identities=15%  Similarity=0.181  Sum_probs=71.7

Q ss_pred             HHHHHHhcC--CcEEEECCCCccc-----cccc-ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEc
Q 021361          159 IAKRVEAFG--CPISYHSRSEKSD-----ANYK-YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI  230 (313)
Q Consensus       159 ~a~~l~~~g--~~V~~~~~~~~~~-----~~~~-~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~  230 (313)
                      +|+.|+..|  .+|++||+++...     .++. ...+-.+.++++|+|++|+|.. .+..++ ++....+++|++++++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv   78 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV   78 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence            578888877  6899999987643     1221 1122267899999999999964 344444 3466779999999999


Q ss_pred             CCCCccCHHHHHHHHHhCCceEEE-ccCCCCCCCC----CcccCCCCcEEEcCCCC
Q 021361          231 GRGAHIDEPELVSALLEGRLAGAG-LDVYENEPEV----PEQMLGLNNVVLLPHVG  281 (313)
Q Consensus       231 ~rg~~vd~~al~~al~~g~~~ga~-lDV~~~EP~~----~~~l~~~pnvi~TPHia  281 (313)
                      +.-+---.+++.+.+..+ ....+ ==.|.+|-..    ...++.--++++||+-.
T Consensus        79 ~SvK~~~~~~~~~~~~~~-~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   79 GSVKAPIVEAMERLLPEG-VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             -S-CHHHHHHHHHHHTSS-GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             CCCCHHHHHHHHHhcCcc-cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            887765566666666522 22221 1234444321    12577778999999865

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.32  E-value=0.00059  Score=65.50  Aligned_cols=88  Identities=24%  Similarity=0.297  Sum_probs=66.5

Q ss_pred             CCEEEEEcCChhHHHHHHHHHh-c-CC-cEEEECCCCcccc-----------c---ccccCCHHHHHhhCCeeEEecCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEA-F-GC-PISYHSRSEKSDA-----------N---YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~-~-g~-~V~~~~~~~~~~~-----------~---~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      -+++||||.|..++.-++.+.. + .. +|.+|+|++.+..           +   ...+.+.++++++||+|+.+++.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            3689999999999999988876 4 24 6999999875321           1   233578999999999999999754


Q ss_pred             h---HhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          207 E---ETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       207 ~---~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      .   ++..++..+.   +|||+.++.+|.-+
T Consensus       235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e  262 (379)
T PRK06199        235 TGDPSTYPYVKREW---VKPGAFLLMPAACR  262 (379)
T ss_pred             CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence            3   3457777654   68999888776643

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.31  E-value=0.0017  Score=61.07  Aligned_cols=82  Identities=18%  Similarity=0.241  Sum_probs=66.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCcccc----------c--ccccCCHHHHHhhCCeeEEecCCChHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSDA----------N--YKYYTNIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~----------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      +++||||.|..++.-++.++. ++. +|.+|+|+++...          +  +....+.+++++.||+|+.++|.++   
T Consensus       131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---  207 (330)
T COG2423         131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---  207 (330)
T ss_pred             cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence            589999999999999998874 566 5999999886421          1  2346789999999999999998664   


Q ss_pred             hccCHHHHhhcCCCcEEEEcCC
Q 021361          211 HIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      .++..+.   ++||+.+..+|.
T Consensus       208 Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             CeecHhh---cCCCcEEEecCC
Confidence            6777755   579999999994

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=97.30  E-value=0.0021  Score=54.03  Aligned_cols=89  Identities=12%  Similarity=0.223  Sum_probs=67.1

Q ss_pred             CCCEEEEEc--CChhHHHHHHHHHhcCCcEEEECCCCcc--c----------------ccccccCCHHHHHhhCCeeEEe
Q 021361          143 SGKSVGIVG--LGRIGTAIAKRVEAFGCPISYHSRSEKS--D----------------ANYKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       143 ~g~~vgiiG--~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~----------------~~~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .|++|++||  .+++.++++..+..||+++.++.|..-.  .                .......++++.++++|+|..-
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            489999999  3899999999999999999988886621  1                0123457999999999998875


Q ss_pred             cCCC---hH--------hhhccCHHHHhhcCCCcEEEEcC
Q 021361          203 CSLT---EE--------THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       203 ~p~~---~~--------t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      .-.+   .+        ....++++.++.+|++++|..+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            5431   11        12467899999999999999987

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.30  E-value=0.0049  Score=58.70  Aligned_cols=145  Identities=12%  Similarity=0.219  Sum_probs=100.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------------cc-------------ccccCCHHHHHhhCCeeE
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------------AN-------------YKYYTNIIDLASNCQILI  200 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~~-------------~~~~~~l~~l~~~aDvv~  200 (313)
                      +|.|+|.|-+|-..+..|..+|++|+.+|..+++.            .+             ..+.++.++.++.+|+++
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~f   81 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVF   81 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEE
Confidence            79999999999999999999999999999766431            01             223578899999999999


Q ss_pred             EecCCChHhhhccC--------HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC-CCCCCCCCc----c
Q 021361          201 VACSLTEETHHIVN--------RKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV-YENEPEVPE----Q  267 (313)
Q Consensus       201 l~~p~~~~t~~~i~--------~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV-~~~EP~~~~----~  267 (313)
                      +++|..+...+-+|        ++..+.++..+++|+=|.-.+=-.+.+.+.+.+..-.. -.+| +.+|=+-..    .
T Consensus        82 IavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~D  160 (414)
T COG1004          82 IAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVYD  160 (414)
T ss_pred             EEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhhh
Confidence            99996554444444        34556677779999999888877777777766654332 2333 455655443    2


Q ss_pred             cCCCCcEEEcCCCCCCcHHHHHHHHHHH
Q 021361          268 MLGLNNVVLLPHVGSDTEETSKAMADLV  295 (313)
Q Consensus       268 l~~~pnvi~TPHia~~t~~~~~~~~~~~  295 (313)
                      .+..+++++    |..+..+.+.+.++.
T Consensus       161 ~~~PdRIVi----G~~~~~a~~~~~ely  184 (414)
T COG1004         161 FLYPDRIVI----GVRSERAAAVLRELY  184 (414)
T ss_pred             ccCCCeEEE----ccCChhHHHHHHHHH
Confidence            444567764    445544444444433

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.30  E-value=0.00017  Score=63.32  Aligned_cols=117  Identities=24%  Similarity=0.271  Sum_probs=79.9

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc---------------------c-------------ccccCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA---------------------N-------------YKYYTN  188 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------------------~-------------~~~~~~  188 (313)
                      .=+.|+|||.|.||..+|+.....|+.|+.+|++.+...                     .             .+...+
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn   89 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN   89 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence            346899999999999999999999999999998765310                     0             011356


Q ss_pred             HHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC
Q 021361          189 IIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI-NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE  263 (313)
Q Consensus       189 l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~i-n~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~  263 (313)
                      +.++++++|+|+=++--+-+.+.-+-++.=...|+.+++. |++.   +....+..+++.... .++|--|.+-|.
T Consensus        90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvPv  161 (298)
T KOG2304|consen   90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVPV  161 (298)
T ss_pred             HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCchh
Confidence            7778888888876665444444333333334467777654 4433   556777777776654 378888887773

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.28  E-value=0.0013  Score=61.73  Aligned_cols=114  Identities=14%  Similarity=0.211  Sum_probs=70.4

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCccccc---------------cc--ccCCHHHHHhhCCeeEEec
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSDAN---------------YK--YYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~---------------~~--~~~~l~~l~~~aDvv~l~~  203 (313)
                      ...++|+|||.|.+|..++..+...| .++..+|...+...+               ..  ...+.+ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            35679999999999999999998888 689999987643111               01  124555 779999999998


Q ss_pred             --CCChH-hh--------hccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH--hCCceEEE--cc
Q 021361          204 --SLTEE-TH--------HIVN--RKVIDALGPSGILINIGRGAHIDEPELVSALL--EGRLAGAG--LD  256 (313)
Q Consensus       204 --p~~~~-t~--------~~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~al~--~g~~~ga~--lD  256 (313)
                        |..+. ++        .++.  .+.++...|.+++|+++-..=+-...+.+.-.  ..++.|.+  +|
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence              44331 11        1111  12344456888899985433233333333321  34566555  55

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.26  E-value=0.002  Score=51.85  Aligned_cols=97  Identities=20%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             EEEEEcC-ChhHHHHHHHHHh-cCCcE-EEECCCCcc-------------cccccccCCHHHHHhhCCeeEEecCCChHh
Q 021361          146 SVGIVGL-GRIGTAIAKRVEA-FGCPI-SYHSRSEKS-------------DANYKYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~-~g~~V-~~~~~~~~~-------------~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      +|+|+|+ |+||+.+++.+.. -|+++ .++++..+.             ..+.....++++++.++|+++-..  +++.
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~   79 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA   79 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence            7999999 9999999999987 78885 567777621             122344578999999999988776  4443


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      -.-.-+..   ++.|.-+|-...|---.+.+.++.+.+
T Consensus        80 ~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~  114 (124)
T PF01113_consen   80 VYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK  114 (124)
T ss_dssp             HHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred             hHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence            32222222   233555555445553333344444433

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.26  E-value=0.00067  Score=63.95  Aligned_cols=82  Identities=10%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             CCEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCcccc----------cc--cccCCHHHHHhhCCeeEEecCCChHh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSDA----------NY--KYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~----------~~--~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      .++++|||.|.+|+..+..+.. .+. +|.+|+|+.++..          +.  ..+.++++++++||+|++++|..   
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~---  208 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE---  208 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence            5799999999999998888874 564 6999999865321          12  22468899999999999998864   


Q ss_pred             hhccCHHHHhhcCCCcEEEEcC
Q 021361          210 HHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ..++..+.   +++|+.+..++
T Consensus       209 ~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        209 EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             CcEecHHH---cCCCceEEeeC
Confidence            35666543   57887776654

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.26  E-value=0.00096  Score=62.21  Aligned_cols=111  Identities=19%  Similarity=0.248  Sum_probs=70.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-----------------ccccCCHHHHHhhCCeeEEecCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-----------------YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-----------------~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ++|+|||.|.||..+|..+...|. +|..+|...+...+                 .....+.++ +++||+|+++++..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            489999999999999999988776 89999985432110                 112356766 78999999998832


Q ss_pred             hH-----------hhhccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHH--HHhCCceEEE--cc
Q 021361          207 EE-----------THHIVN--RKVIDALGPSGILINIGRGAHIDEPELVSA--LLEGRLAGAG--LD  256 (313)
Q Consensus       207 ~~-----------t~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~a--l~~g~~~ga~--lD  256 (313)
                      ..           +..++.  .+.+....+++++|+++-.-=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            21           111221  122333457889999865433333444444  4445566654  56

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.25  E-value=0.00066  Score=62.70  Aligned_cols=36  Identities=42%  Similarity=0.620  Sum_probs=34.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|+.+||+|+|.+|+.-.+..+++|++|+++|++.+
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~  216 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK  216 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence            799999999999999999999999999999999864

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.23  E-value=0.0014  Score=61.38  Aligned_cols=102  Identities=12%  Similarity=0.124  Sum_probs=65.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCC-ccc---ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSE-KSD---ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~-~~~---~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      .+|||||+|+||+..++.+... ++++. +++++. ...   .+.....+.++++.+.|+|++|+|...+.     ....
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~~   78 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQA   78 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHHH
Confidence            5899999999999999999765 78876 478875 221   12222346777788999999999864332     2233


Q ss_pred             hhcCCCcEEEEcCCC--CccC-HHHHHHHHHh-CCce
Q 021361          219 DALGPSGILINIGRG--AHID-EPELVSALLE-GRLA  251 (313)
Q Consensus       219 ~~mk~ga~~in~~rg--~~vd-~~al~~al~~-g~~~  251 (313)
                      ..|+.|.=+|+..--  .+-+ .+.+.++.++ |+..
T Consensus        79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            446667667776421  1123 3334444453 5654

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.21  E-value=0.00072  Score=59.28  Aligned_cols=41  Identities=29%  Similarity=0.270  Sum_probs=36.9

Q ss_pred             ccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          137 ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       137 ~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      |..-.|.||+|.|||.|.+|...++.|...|++|+++++..
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            44567999999999999999999999999999999998754

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.20  E-value=0.0016  Score=59.53  Aligned_cols=102  Identities=19%  Similarity=0.203  Sum_probs=62.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCCccc-------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSEKSD-------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~-------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      .+|||||+|.||+.+++.+... ++++. ++++.....       .+...+.+++++-.+.|+|+.|.|.....+     
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e-----   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKE-----   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHH-----
Confidence            3799999999999999999865 56653 343322111       123446788888456999999998543311     


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCH---HHHHHHHHhCCce
Q 021361          216 KVIDALGPSGILINIGRGAHIDE---PELVSALLEGRLA  251 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~---~al~~al~~g~~~  251 (313)
                      -....++.|.-++-.+-|.+.|.   +.|.++.++++..
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            12233455555555555655554   4466666665543

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.19  E-value=0.0011  Score=52.48  Aligned_cols=100  Identities=20%  Similarity=0.287  Sum_probs=64.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhc--CCcE-EEECCCCccc------ccccccCCHHHHHh--hCCeeEEecCCChHhhhccC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF--GCPI-SYHSRSEKSD------ANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~--g~~V-~~~~~~~~~~------~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~  214 (313)
                      ++||||+|.+|+...+.+...  ++++ .++|++++..      .+...+.+++++++  +.|+|++++|...+..  +-
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~   79 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA   79 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence            799999999999999888766  4565 4688876432      23446789999998  7999999998744433  22


Q ss_pred             HHHHhhcCCC-cEEEEc-CCCCccCHHHHHHHHHhCCc
Q 021361          215 RKVIDALGPS-GILINI-GRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       215 ~~~l~~mk~g-a~~in~-~rg~~vd~~al~~al~~g~~  250 (313)
                      ...   ++.| .+++.- ---.+-+.+.|.++.++.+.
T Consensus        80 ~~~---l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~  114 (120)
T PF01408_consen   80 KKA---LEAGKHVLVEKPLALTLEEAEELVEAAKEKGV  114 (120)
T ss_dssp             HHH---HHTTSEEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred             HHH---HHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence            222   3333 344441 11233445556666555443

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.19  E-value=0.0017  Score=60.46  Aligned_cols=85  Identities=16%  Similarity=0.125  Sum_probs=64.4

Q ss_pred             CCEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCcccc----------c--ccccCCHHHHHhhCCeeEEecCCChHh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSDA----------N--YKYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~----------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      -+++||||.|..|+.-++.+.. +.. +|.+|+|+.++..          +  ...+.+.++++.+||+|+.++|.+   
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~---  193 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD---  193 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence            4699999999999988887764 444 5999999976421          1  223578999999999999988743   


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      ..++..+.   +|||+.+.-+|...
T Consensus       194 ~P~~~~~~---l~pg~hV~aiGs~~  215 (301)
T PRK06407        194 TPIFNRKY---LGDEYHVNLAGSNY  215 (301)
T ss_pred             CcEecHHH---cCCCceEEecCCCC
Confidence            56777654   57898887777543

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.17  E-value=0.001  Score=53.15  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=53.2

Q ss_pred             EEEEEc-CChhHHHHHHHHHhc-CCcEEEE-CCCCcccc-----c--cc-c-c--CCHHHH-HhhCCeeEEecCCChHhh
Q 021361          146 SVGIVG-LGRIGTAIAKRVEAF-GCPISYH-SRSEKSDA-----N--YK-Y-Y--TNIIDL-ASNCQILIVACSLTEETH  210 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~~-g~~V~~~-~~~~~~~~-----~--~~-~-~--~~l~~l-~~~aDvv~l~~p~~~~t~  210 (313)
                      ++||+| .|.+|+.+++.+... ++++.++ ++......     .  .. . .  .+.+++ ..++|+|++|+|.....+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            589999 599999999999874 7887655 43321110     0  00 0 0  111122 258999999999764433


Q ss_pred             hccCHHHHhhcCCCcEEEEcC
Q 021361          211 HIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~  231 (313)
                       .+. .....+++|.++|+++
T Consensus        81 -~~~-~~~~~~~~g~~viD~s   99 (122)
T smart00859       81 -IAP-LLPKAAEAGVKVIDLS   99 (122)
T ss_pred             -HHH-HHHhhhcCCCEEEECC
Confidence             222 2345579999999997

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.14  E-value=0.0097  Score=58.05  Aligned_cols=106  Identities=14%  Similarity=0.131  Sum_probs=69.6

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---ccc--------------------------c-ccCC
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---ANY--------------------------K-YYTN  188 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---~~~--------------------------~-~~~~  188 (313)
                      |.+|.|++|.|.|+|++|...|+.|..+|++|++++.+....   .+.                          . ...+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            557999999999999999999999999999998754422110   000                          0 0113


Q ss_pred             HHHHH-hhCCeeEEecCCChHhhhccCHHHHhhcCC-Cc-EEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          189 IIDLA-SNCQILIVACSLTEETHHIVNRKVIDALGP-SG-ILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       189 l~~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~-ga-~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .++++ ..||+++-|.     +++.|+++..++++. |. +++--+.| ++..++. +.|.+..+.
T Consensus       303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~  361 (444)
T PRK14031        303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL  361 (444)
T ss_pred             CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence            33443 3588777543     477899998888865 44 44444455 6777765 445555554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.13  E-value=0.0035  Score=58.19  Aligned_cols=104  Identities=11%  Similarity=0.183  Sum_probs=74.0

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCC--CcccccccccCCHHHHHhhCCeeEEecCCChHhh---h------
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS--EKSDANYKYYTNIIDLASNCQILIVACSLTEETH---H------  211 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~--~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~---~------  211 (313)
                      .|++++|||.-.=-..+++.|...|++|.++.-.  .....++....+.+++++++|+|++-+|.+.+..   .      
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~   80 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK   80 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence            3789999999999999999999999998765432  2234466666678899999999999887643321   1      


Q ss_pred             -ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          212 -IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       212 -~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                       -++.+.+++|+++..++ +|.+..   . +-+.+.+.++.
T Consensus        81 ~~~~~~~l~~l~~~~~v~-~G~~~~---~-~~~~~~~~gi~  116 (296)
T PRK08306         81 LVLTEELLELTPEHCTIF-SGIANP---Y-LKELAKETNRK  116 (296)
T ss_pred             CcchHHHHHhcCCCCEEE-EecCCH---H-HHHHHHHCCCe
Confidence             13577899999998444 344332   2 33556677776

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.12  E-value=0.001  Score=60.63  Aligned_cols=109  Identities=17%  Similarity=0.276  Sum_probs=71.5

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcC----CcEEEECCCCccccc----------------ccccCCHHHHHhhCCeeEEecCC
Q 021361          147 VGIVGL-GRIGTAIAKRVEAFG----CPISYHSRSEKSDAN----------------YKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       147 vgiiG~-G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~~----------------~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      |+|||. |.+|..+|..|...|    .+|..||...+...+                .....++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            689999 999999999998777    689999987643211                11134567889999999996522


Q ss_pred             Ch-----------HhhhccC--HHHHhhcCCCcEEEEcCCCCccCHHH--HHHH--HHhCCceEEE-ccC
Q 021361          206 TE-----------ETHHIVN--RKVIDALGPSGILINIGRGAHIDEPE--LVSA--LLEGRLAGAG-LDV  257 (313)
Q Consensus       206 ~~-----------~t~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~a--l~~a--l~~g~~~ga~-lDV  257 (313)
                      ..           .+..++.  .+.++...|+++++|++  .++|.-.  +.+.  +...++.|.+ +|.
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~  148 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP  148 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence            10           0111111  12344456899999995  5555443  4344  3566788888 775

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.10  E-value=0.0023  Score=61.34  Aligned_cols=98  Identities=13%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCccccc---------------ccccCCHHHHHhhCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSDAN---------------YKYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      ++|.|||.|.+|+.+|..|.+.| .+|++.||+.++...               +.-...+.+++++.|+|+.++|..  
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~--   79 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF--   79 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence            57999999999999999999888 899999999653211               111235777888888888888853  


Q ss_pred             hhhccCHHHH-hhcCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          209 THHIVNRKVI-DALGPSGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       209 t~~~i~~~~l-~~mk~ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                          ++...+ +.++.|.-.++++-.+.-- -++.+..++..
T Consensus        80 ----~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Ag  116 (389)
T COG1748          80 ----VDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAG  116 (389)
T ss_pred             ----hhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcC
Confidence                222333 3346666667766544332 33333333333

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.08  E-value=0.0018  Score=61.30  Aligned_cols=84  Identities=12%  Similarity=0.190  Sum_probs=62.4

Q ss_pred             CEEEEEcCChhHHHHHHHHH-hcCC-cEEEECCCCcccc---------c--ccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVE-AFGC-PISYHSRSEKSDA---------N--YKYYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~-~~g~-~V~~~~~~~~~~~---------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      ++++|||.|..++.-++.+. -+.. +|.+|+|+++...         +  ...+.+.++++++||+|+.++|.+ +...
T Consensus       130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~P  208 (346)
T PRK07589        130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNAT  208 (346)
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCCc
Confidence            68999999999988887665 3444 5999999976421         1  223578999999999999999742 2235


Q ss_pred             ccCHHHHhhcCCCcEEEEcCC
Q 021361          212 IVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ++..+   .+|||+.+.-+|.
T Consensus       209 vl~~~---~lkpG~hV~aIGs  226 (346)
T PRK07589        209 ILTDD---MVEPGMHINAVGG  226 (346)
T ss_pred             eecHH---HcCCCcEEEecCC
Confidence            56664   4699998888774

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.04  E-value=0.0013  Score=61.86  Aligned_cols=58  Identities=24%  Similarity=0.436  Sum_probs=47.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccc----c---cc---CCHHHHHhhCCeeEE
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY----K---YY---TNIIDLASNCQILIV  201 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~----~---~~---~~l~~l~~~aDvv~l  201 (313)
                      +++|||||.|-.|++|+...+.+|+++.+.|+.++....-    .   .+   ..+.++.++||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999999999999999999988754220    0   11   257788999999875

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.03  E-value=0.0047  Score=57.11  Aligned_cols=37  Identities=24%  Similarity=0.393  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCC
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSE  177 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~  177 (313)
                      .+.||++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            36789999999999999999999999997 99999975

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.03  E-value=0.0034  Score=61.25  Aligned_cols=106  Identities=16%  Similarity=0.231  Sum_probs=70.9

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEE-CCCCcc--cc-------------------ccc-----ccCCHHH
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH-SRSEKS--DA-------------------NYK-----YYTNIID  191 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~-~~~~~~--~~-------------------~~~-----~~~~l~~  191 (313)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+..-  ..                   ++.     ...+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            45689999999999999999999999999999877 522100  00                   000     0113344


Q ss_pred             HHh-hCCeeEEecCCChHhhhccCHHHHhhcC--CCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          192 LAS-NCQILIVACSLTEETHHIVNRKVIDALG--PSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       192 l~~-~aDvv~l~~p~~~~t~~~i~~~~l~~mk--~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ++. +||+++-|..     .+.|+.+....++  .-.+++-.+-+++ ..+ -.+.|.++.+.
T Consensus       307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~  362 (445)
T PRK09414        307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL  362 (445)
T ss_pred             ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence            443 6998887663     5678888777773  2346666677776 444 45777777776

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=97.03  E-value=0.0019  Score=62.98  Aligned_cols=120  Identities=18%  Similarity=0.290  Sum_probs=78.8

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---------ccccc--cCCHHHHHhhCCeeEEecCCChHhh
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---------ANYKY--YTNIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~~~~~--~~~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      +.+++|.|+|+|.-|.++|+.|...|++|+++|.++...         .+...  -....+.+.++|+|+.+ |.-+-+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~   83 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH   83 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence            459999999999999999999999999999999766541         11111  11222677889999885 3222222


Q ss_pred             h-----------ccCH-HHHhhc-CCC-cEEEEcCCCCccCHHHHHHHHHh--------CCceEEEccCCCCCC
Q 021361          211 H-----------IVNR-KVIDAL-GPS-GILINIGRGAHIDEPELVSALLE--------GRLAGAGLDVYENEP  262 (313)
Q Consensus       211 ~-----------~i~~-~~l~~m-k~g-a~~in~~rg~~vd~~al~~al~~--------g~~~ga~lDV~~~EP  262 (313)
                      .           ++++ +.+-+. ++. .+-|--+-|+.-...-+...|++        |+|...++|+.++++
T Consensus        84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~  157 (448)
T COG0771          84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE  157 (448)
T ss_pred             HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence            1           2222 233332 122 44455556887777777777766        667788899988744

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.02  E-value=0.0009  Score=58.39  Aligned_cols=60  Identities=12%  Similarity=0.261  Sum_probs=46.5

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCC
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS  224 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~g  224 (313)
                      +++|||. |.||+.++..++..|+.|+                     +++||+|++|+|.. .+..++     +.+.  
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~-~~~~~i-----~~~~--   52 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPID-AALNYI-----ESYD--   52 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHH-HHHHHH-----HHhC--
Confidence            7999999 9999999999999999885                     36899999999964 333333     2232  


Q ss_pred             cEEEEcCCCC
Q 021361          225 GILINIGRGA  234 (313)
Q Consensus       225 a~~in~~rg~  234 (313)
                      .+++|++.-+
T Consensus        53 ~~v~Dv~SvK   62 (197)
T PRK06444         53 NNFVEISSVK   62 (197)
T ss_pred             CeEEeccccC
Confidence            3788998654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.96  E-value=0.025  Score=49.69  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=37.3

Q ss_pred             ccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          137 ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       137 ~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      |..-.|+|++|.|||.|.+|..-++.|..+|++|+++++...
T Consensus         2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            344578999999999999999999999999999999998654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.94  E-value=0.014  Score=55.88  Aligned_cols=146  Identities=18%  Similarity=0.322  Sum_probs=90.6

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc---cc---------------------cccccCCHHHHHh
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS---DA---------------------NYKYYTNIIDLAS  194 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---~~---------------------~~~~~~~l~~l~~  194 (313)
                      +..|+|++|.|=|+|++|+-+|+.|...|.+|++++.+...   +.                     +.+. .+-++++.
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~-i~~~e~~~  280 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEY-ITNEELLE  280 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceE-cccccccc
Confidence            44589999999999999999999999999999888766541   00                     1111 22355544


Q ss_pred             -hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCc
Q 021361          195 -NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNN  273 (313)
Q Consensus       195 -~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pn  273 (313)
                       .||+++=|     .+.+.|+.+..++++-. +++-.+-|++- .+|--..+ +..|. ++=|          -+.+.-.
T Consensus       281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~-erGIl-~~PD----------~laNAGG  341 (411)
T COG0334         281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILL-ERGIL-VVPD----------ILANAGG  341 (411)
T ss_pred             ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHH-HCCCE-EcCh----------hhccCcC
Confidence             68876633     46778999999988765 77777777765 44444434 44454 2322          2333333


Q ss_pred             EEEcC--C------CCCCcHHHHHHHHHHHHHHHHHHHc
Q 021361          274 VVLLP--H------VGSDTEETSKAMADLVIENLVAHFS  304 (313)
Q Consensus       274 vi~TP--H------ia~~t~~~~~~~~~~~~~ni~~~~~  304 (313)
                      |+.+=  .      ..+..++..+++..++.+..+.+..
T Consensus       342 V~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~  380 (411)
T COG0334         342 VIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQ  380 (411)
T ss_pred             eeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            33332  1      1133444556666666666665543

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.89  E-value=0.0027  Score=55.64  Aligned_cols=37  Identities=22%  Similarity=0.333  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~  176 (313)
                      ..|++++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46899999999999999999999999998 68888875

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.88  E-value=0.0082  Score=55.97  Aligned_cols=89  Identities=13%  Similarity=0.260  Sum_probs=64.4

Q ss_pred             cCCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCCCccccc---ccccCCHHHHHhhCCeeEEecCCC---------
Q 021361          142 FSGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRSEKSDAN---YKYYTNIIDLASNCQILIVACSLT---------  206 (313)
Q Consensus       142 l~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~---~~~~~~l~~l~~~aDvv~l~~p~~---------  206 (313)
                      +.|++|+++|=   +++.++++..+..+|+++.+..|..-....   .....++++.++++|+|..-. ..         
T Consensus       154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~-~q~e~~~~~~~  232 (305)
T PRK00856        154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLR-VQKERMDGGLL  232 (305)
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECC-cccccccccch
Confidence            78999999998   589999999999999999988876532211   244679999999999887743 11         


Q ss_pred             hHh-----hhccCHHHHhhcCCCcEEEEcC
Q 021361          207 EET-----HHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       207 ~~t-----~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ++.     ...++++.++.+|++++|.-+.
T Consensus       233 ~~~~~~~~~y~v~~~ll~~a~~~~~~mHcL  262 (305)
T PRK00856        233 PSYEEYKRSYGLTAERLALAKPDAIVMHPG  262 (305)
T ss_pred             HHHHHHhccCccCHHHHhhcCCCCEEECCC
Confidence            011     2245666677777777776654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.88  E-value=0.0012  Score=60.91  Aligned_cols=64  Identities=13%  Similarity=0.219  Sum_probs=46.3

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccccc----------cccC---CHHHHHhhCCeeEEecCC
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDANY----------KYYT---NIIDLASNCQILIVACSL  205 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~----------~~~~---~l~~l~~~aDvv~l~~p~  205 (313)
                      ++|+++.|||.|.+|++++..|...|+ +|++++|+.++....          ....   ++.+.+.++|+|+.++|.
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~  200 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA  200 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence            678999999999999999999999998 599999986532110          0011   122445667777777775

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.87  E-value=0.0066  Score=56.17  Aligned_cols=38  Identities=26%  Similarity=0.412  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCc
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~  178 (313)
                      .++||++.|+|.|..+++++-.|...|. +|++++|+.+
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            4678999999999999999999988897 6999999853

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.86  E-value=0.002  Score=54.23  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=37.3

Q ss_pred             cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          136 FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       136 ~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      +|..-.|+|++|.|||.|.+|...++.|...|++|.++++..
T Consensus         5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~   46 (157)
T PRK06719          5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI   46 (157)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence            455678999999999999999999999999999999987543

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.84  E-value=0.0045  Score=57.68  Aligned_cols=92  Identities=20%  Similarity=0.305  Sum_probs=60.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc-------------c--cccCCHHHHHhhCCeeEEecCCCh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN-------------Y--KYYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~-------------~--~~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      ++|+|||.|.+|+.+|..|...|.  +|..+|+..+...+             .  .......+.+++||+|+++.....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~   80 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ   80 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence            489999999999999999998884  79999987654211             0  111122345789999999887531


Q ss_pred             H---hh--------hccC--HHHHhhcCCCcEEEEcCCCCccCH
Q 021361          208 E---TH--------HIVN--RKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       208 ~---t~--------~~i~--~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      .   ++        .++.  .+.+....|.+++++++  .++|.
T Consensus        81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~  122 (306)
T cd05291          81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDV  122 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHH
Confidence            1   11        1111  12344567788999986  44443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.83  E-value=0.0016  Score=52.16  Aligned_cols=83  Identities=16%  Similarity=0.200  Sum_probs=51.0

Q ss_pred             EEEEEc-CChhHHHHHHHHHh-cCCcE-EEECCCCcccc------c-------ccccCCHHHHHhhCCeeEEecCCChHh
Q 021361          146 SVGIVG-LGRIGTAIAKRVEA-FGCPI-SYHSRSEKSDA------N-------YKYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~-~g~~V-~~~~~~~~~~~------~-------~~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      +|+||| .|.+|+.+.++|.. ..+++ .+++++.....      .       ........+.+.++|+|++|+|.....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            699999 99999999999986 34454 44555541110      0       011112234459999999999853222


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCC
Q 021361          210 HHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      +  +....   +++|..+|+.+..
T Consensus        81 ~--~~~~~---~~~g~~ViD~s~~   99 (121)
T PF01118_consen   81 E--LAPKL---LKAGIKVIDLSGD   99 (121)
T ss_dssp             H--HHHHH---HHTTSEEEESSST
T ss_pred             H--HHHHH---hhCCcEEEeCCHH
Confidence            2  22222   5789999998743

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.82  E-value=0.024  Score=55.39  Aligned_cols=155  Identities=14%  Similarity=0.113  Sum_probs=90.7

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEE--------ECCCCccc-c-----------------------ccccc
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY--------HSRSEKSD-A-----------------------NYKYY  186 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~--------~~~~~~~~-~-----------------------~~~~~  186 (313)
                      |.+|.|++|.|=|+|++|..+|+.|...|++|++        ||+..-.. .                       +.+. 
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~-  301 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTF-  301 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEE-
Confidence            4578999999999999999999999999999988        55332110 0                       1111 


Q ss_pred             CCHHHHH-hhCCeeEEecCCChHhhhccCHHHHhhcC-C-CcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC
Q 021361          187 TNIIDLA-SNCQILIVACSLTEETHHIVNRKVIDALG-P-SGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE  263 (313)
Q Consensus       187 ~~l~~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~~mk-~-ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~  263 (313)
                      .+.++++ ..||+++-|.     +.+.|+.+..+.+. . -.+++-.+-+ ++..+|- +.|.+..+. ++=|+.-+-=-
T Consensus       302 i~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGG  373 (445)
T PRK14030        302 FAGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGG  373 (445)
T ss_pred             cCCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCC
Confidence            1233433 3588777544     57789988888873 2 3456666666 6666654 677777776 33333222110


Q ss_pred             CCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 021361          264 VPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFS  304 (313)
Q Consensus       264 ~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~  304 (313)
                      .--..+  ..+-=.-|.-|..++..+++.+.+.+-+++.+.
T Consensus       374 Vivs~~--E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~~  412 (445)
T PRK14030        374 VATSGL--EMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCVK  412 (445)
T ss_pred             eeeehh--hhhccccccCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            000000  111112345555556556666666665555543

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.77  E-value=0.0048  Score=57.94  Aligned_cols=112  Identities=15%  Similarity=0.199  Sum_probs=68.4

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc-------------c----ccccCCHHHHHhhCCeeEEec
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA-------------N----YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~-------------~----~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      ++.++|+|||.|.+|..+|..+...|. +|..+|.+++...             +    .....+. +.+++||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            455799999999999999999988885 8999998775321             0    1112455 4679999999976


Q ss_pred             CCCh----------------HhhhccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH--hCCceEEE
Q 021361          204 SLTE----------------ETHHIVN--RKVIDALGPSGILINIGRGAHIDEPELVSALL--EGRLAGAG  254 (313)
Q Consensus       204 p~~~----------------~t~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~al~--~g~~~ga~  254 (313)
                      -...                .+..++.  .+.+....|.+++++++-..=+-...+.+.-.  ..++.|.+
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            3211                1111111  12334455778999987333222333433321  24566665

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.76  E-value=0.0055  Score=56.96  Aligned_cols=59  Identities=14%  Similarity=0.259  Sum_probs=43.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc---------------cc--ccCCHHHHHhhCCeeEEecC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN---------------YK--YYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~---------------~~--~~~~l~~l~~~aDvv~l~~p  204 (313)
                      ++|+|||.|.+|..+|..+...|. +|..+|+..+...+               ..  ...+. +.+++||+|+++..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~   79 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG   79 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence            589999999999999999987765 89999986643211               01  12345 45789999999863

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.73  E-value=0.0027  Score=61.67  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=67.3

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccc-----cccCCHHHHHhhCCeeEEecCCChHhh--------
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY-----KYYTNIIDLASNCQILIVACSLTEETH--------  210 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----~~~~~l~~l~~~aDvv~l~~p~~~~t~--------  210 (313)
                      .++|.|||+|.+|.++|+.|+..|++|.++|+........     ......+.+..++|+|+.+.+..+...        
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~   82 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS   82 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence            4689999999999999999999999999999865422110     111234445578998888775543221        


Q ss_pred             --hccCHHHH--hh--cCC-CcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          211 --HIVNRKVI--DA--LGP-SGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       211 --~~i~~~~l--~~--mk~-ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                        .++.+..+  ..  +.+ -.+-|--+-|+.-..+-+...|+..
T Consensus        83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~  127 (418)
T PRK00683         83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL  127 (418)
T ss_pred             CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence              12222221  21  212 2455555578877777788888653

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.73  E-value=0.0057  Score=57.28  Aligned_cols=89  Identities=17%  Similarity=0.257  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------ccccCCHHHHHhhCCeeEEecCCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ++++|+|||.|.+|..+|-.|...|.  ++..+|+..+...+              .....+..+.+++||+|+++.-..
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~   84 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP   84 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence            57899999999999999999998887  79999986653211              011122335689999999976542


Q ss_pred             hH---hh--------hccC--HHHHhhcCCCcEEEEcC
Q 021361          207 EE---TH--------HIVN--RKVIDALGPSGILINIG  231 (313)
Q Consensus       207 ~~---t~--------~~i~--~~~l~~mk~ga~~in~~  231 (313)
                      ..   ++        .++.  .+.+....+++++++++
T Consensus        85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            21   11        1111  12223334688999986

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.72  E-value=0.0043  Score=58.67  Aligned_cols=38  Identities=32%  Similarity=0.388  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE  177 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~  177 (313)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            57999999999999999999999999998 688888753

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.71  E-value=0.0047  Score=55.74  Aligned_cols=105  Identities=18%  Similarity=0.274  Sum_probs=70.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEE--------CCCCccc---------ccc--ccc----------CCHH-
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH--------SRSEKSD---------ANY--KYY----------TNII-  190 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~--------~~~~~~~---------~~~--~~~----------~~l~-  190 (313)
                      .++|+++.|-|+|++|+.+|+.|...|++|.+.        |+..-..         .+.  ..+          .+-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            589999999999999999999999999998765        3221100         001  101          1222 


Q ss_pred             HHH-hhCCeeEEecCCChHhhhccCHHHHh-hcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          191 DLA-SNCQILIVACSLTEETHHIVNRKVID-ALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       191 ~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~-~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +++ ..||+++-|.     ..+.|+.+... .+++++-+|--+--..+..++.. .|.+..+.
T Consensus       109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL  165 (244)
T ss_dssp             HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E
T ss_pred             ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE
Confidence            555 4899999874     25678888888 78777755554444445566665 88888876

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.70  E-value=0.014  Score=56.92  Aligned_cols=106  Identities=14%  Similarity=0.159  Sum_probs=68.5

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEE-EECCCCc----------cc--------------c-------ccccc
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSEK----------SD--------------A-------NYKYY  186 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~-~~~~~~~----------~~--------------~-------~~~~~  186 (313)
                      +.+|.|++|.|=|+|++|+..|+.|..+|++|+ +.|.+..          ..              .       +.+. 
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~-  310 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY-  310 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE-
Confidence            457899999999999999999999999999988 4444310          00              0       0011 


Q ss_pred             CCHHHHH-hhCCeeEEecCCChHhhhccCHHHHhhc-CCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          187 TNIIDLA-SNCQILIVACSLTEETHHIVNRKVIDAL-GPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       187 ~~l~~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~~m-k~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+.++++ ..||+.+-|.     +.+.|+.+..+.+ +.++.+|-=+--..+..+ -.+.|.+..+.
T Consensus       311 ~~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~e-A~~~L~~~GI~  371 (454)
T PTZ00079        311 VPGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIE-ATHLFKKNGVI  371 (454)
T ss_pred             eCCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHH-HHHHHHHCCcE
Confidence            1222322 3688777554     5778888887766 556655554444444554 44667777766

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.68  E-value=0.017  Score=54.03  Aligned_cols=90  Identities=10%  Similarity=0.092  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHhcCCcEEEECCCCccc-----------------------cc-------------ccccCC--HHHHHhhC
Q 021361          155 IGTAIAKRVEAFGCPISYHSRSEKSD-----------------------AN-------------YKYYTN--IIDLASNC  196 (313)
Q Consensus       155 iG~~~a~~l~~~g~~V~~~~~~~~~~-----------------------~~-------------~~~~~~--l~~l~~~a  196 (313)
                      ||..+|..+...|++|..||++++..                       .+             .....+  ..+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            68999999999999999999987310                       00             001122  55788999


Q ss_pred             CeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361          197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALL  246 (313)
Q Consensus       197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~  246 (313)
                      |+|+-++|-+.+.+.-+-++..+.++++++|  ++.-+.+....|.+.++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence            9999999999999988877788889999998  44555677778887764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.66  E-value=0.0046  Score=55.10  Aligned_cols=148  Identities=13%  Similarity=0.087  Sum_probs=85.0

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------c--cc-
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------Y--KY-  185 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~--~~-  185 (313)
                      ..|++++|.|+|+|.+|..+|+.|...|. ++..+|...-.             ..+                 .  .. 
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999998 57777653210             000                 0  00 


Q ss_pred             -----cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCC
Q 021361          186 -----YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYEN  260 (313)
Q Consensus       186 -----~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~  260 (313)
                           ..+++++++++|+|+.|+. +..++.++++...+   .+.-+|..+-.+               ..|... ++.+
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g~~g---------------~~g~v~-~~~p  156 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGAVLG---------------FEGQVT-VFIP  156 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEEecc---------------CEEEEE-EECC
Confidence                 1234567888998888765 56677777764443   245566654221               112111 1111


Q ss_pred             C-CCCCcccCCC-CcE-EEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361          261 E-PEVPEQMLGL-NNV-VLLPHVGSDTEETSKAMADLVIENLVAHFSNKP  307 (313)
Q Consensus       261 E-P~~~~~l~~~-pnv-i~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  307 (313)
                      . ...-.-+... +.- .-++..++.......-...+++..+.+++.|.+
T Consensus       157 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~  206 (228)
T cd00757         157 GEGPCYRCLFPEPPPPGVPSCAEAGVLGPLVGVIGSLQALEALKILLGIG  206 (228)
T ss_pred             CCCCCccccCCCCCCCCCCccccCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence            1 0000001100 000 112233445545556678888888999998874

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.64  E-value=0.016  Score=56.90  Aligned_cols=107  Identities=21%  Similarity=0.297  Sum_probs=78.0

Q ss_pred             cCCCEEEEEcC----ChhHHHHHHHHHhcCC--cEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          142 FSGKSVGIVGL----GRIGTAIAKRVEAFGC--PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       142 l~g~~vgiiG~----G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      ++-++|.|||.    |.+|..+.+.++..|+  +|+.+++......+...+.+++++-...|++++++|. +.+...+.+
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l~e   83 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVVEE   83 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCH-HHHHHHHHH
Confidence            56789999999    8899999999999888  6888898877667777888999998889999999984 344444443


Q ss_pred             HHHhhcCCCcE-EEEcCCCC-----ccCHHHHHHHHHhCCce
Q 021361          216 KVIDALGPSGI-LINIGRGA-----HIDEPELVSALLEGRLA  251 (313)
Q Consensus       216 ~~l~~mk~ga~-~in~~rg~-----~vd~~al~~al~~g~~~  251 (313)
                       ..+ ..-.++ ++.-+-++     ...++++.+..+++.+.
T Consensus        84 -~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir  123 (447)
T TIGR02717        84 -CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR  123 (447)
T ss_pred             -HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence             222 333444 44333333     23467888888887766

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.63  E-value=0.0023  Score=52.78  Aligned_cols=104  Identities=21%  Similarity=0.304  Sum_probs=69.0

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----cccc--------------ccCCHHHHHhhCCeeEEecCCChH
Q 021361          147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYK--------------YYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       147 vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~--------------~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      |+|+|.|.||.-+|-+|+..|.+|..+.|.....    .+..              ......+....+|+|++++... +
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence            6899999999999999999999999999877110    1100              0112235678899999999754 3


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 021361          209 THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGA  253 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga  253 (313)
                      +...+.. ....+++++.++-.--| +-.++.+.+.+...++.++
T Consensus        80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g  122 (151)
T PF02558_consen   80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGG  122 (151)
T ss_dssp             HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEE
T ss_pred             hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEE
Confidence            4444443 55666777777766554 5556667666655566543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.63  E-value=0.0093  Score=54.21  Aligned_cols=61  Identities=18%  Similarity=0.244  Sum_probs=45.9

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhc-CCcEE-EECCCCccc-----ccccccCCHHHHHhhCCeeEEecCC
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAF-GCPIS-YHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .+|+|+|+ |.||+.+++.+... ++++. ++|+..+..     .+...+.+++++++.+|+|+.++|.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p   70 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTP   70 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCH
Confidence            37999998 99999999998864 68865 577765432     1233457899999899999977753

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.61  E-value=0.005  Score=48.12  Aligned_cols=76  Identities=7%  Similarity=0.120  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHhcCCcEEEECCCCcccc--------cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCc
Q 021361          154 RIGTAIAKRVEAFGCPISYHSRSEKSDA--------NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSG  225 (313)
Q Consensus       154 ~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga  225 (313)
                      +-+..+++.|+..|++|.+|||.-....        +.....++++.++.+|+|+++++.. +-..+--.+....|+++.
T Consensus        17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~   95 (106)
T PF03720_consen   17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPP   95 (106)
T ss_dssp             -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSE
T ss_pred             CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCC
Confidence            4577899999999999999999875431        2444678999999999999999753 333332244567788899


Q ss_pred             EEEEc
Q 021361          226 ILINI  230 (313)
Q Consensus       226 ~~in~  230 (313)
                      +|+++
T Consensus        96 ~iiD~  100 (106)
T PF03720_consen   96 VIIDG  100 (106)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99996

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.57  E-value=0.0038  Score=55.05  Aligned_cols=88  Identities=23%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             ccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-------c---ccccCCHHHHHhhCCeeEEecCCC
Q 021361          137 ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------N---YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       137 ~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------~---~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +...+|+||+|.|||.|.+|..=++.|...|++|+++++....+.       .   .......+++. .+++|+.+++..
T Consensus         5 Pl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~-~~~lviaAt~d~   83 (210)
T COG1648           5 PLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLD-DAFLVIAATDDE   83 (210)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhc-CceEEEEeCCCH
Confidence            456689999999999999999999999999999999998773210       0   01111233333 377777776532


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEc
Q 021361          207 EETHHIVNRKVIDALGPSGILINI  230 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~  230 (313)
                      +     +|+..+..+++-.++||+
T Consensus        84 ~-----ln~~i~~~a~~~~i~vNv  102 (210)
T COG1648          84 E-----LNERIAKAARERRILVNV  102 (210)
T ss_pred             H-----HHHHHHHHHHHhCCceec
Confidence            2     455566666666677776

>PLN02527 aspartate carbamoyltransferase

Probab=96.57  E-value=0.02  Score=53.42  Aligned_cols=89  Identities=21%  Similarity=0.368  Sum_probs=63.3

Q ss_pred             cCCCEEEEEcCC---hhHHHHHHHHHhc-CCcEEEECCCCccc----------cc--ccccCCHHHHHhhCCeeEEecCC
Q 021361          142 FSGKSVGIVGLG---RIGTAIAKRVEAF-GCPISYHSRSEKSD----------AN--YKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       142 l~g~~vgiiG~G---~iG~~~a~~l~~~-g~~V~~~~~~~~~~----------~~--~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      +.|++|+++|-+   ++.++++..+..+ |++|.+..|..-..          .+  .....++++.++++|+|.... .
T Consensus       149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~-~  227 (306)
T PLN02527        149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR-I  227 (306)
T ss_pred             cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC-c
Confidence            789999999975   6889999998887 99998887754211          11  233578999999999998843 2


Q ss_pred             ChH--------h-----hhccCHHHHhhcCCCcEEEEcC
Q 021361          206 TEE--------T-----HHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       206 ~~~--------t-----~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ..+        .     ...++.+.++.++++++|..+.
T Consensus       228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl  266 (306)
T PLN02527        228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL  266 (306)
T ss_pred             chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence            111        1     1345667777777777777654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.56  E-value=0.0054  Score=55.38  Aligned_cols=87  Identities=20%  Similarity=0.237  Sum_probs=57.8

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-------------cc-----------------cc----
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-------------AN-----------------YK----  184 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~~----  184 (313)
                      ..|+.++|+|||+|.+|..+++.|...|. ++.++|...-..             .+                 ..    
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            57999999999999999999999999997 577776532110             00                 00    


Q ss_pred             --cc--CCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEc
Q 021361          185 --YY--TNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI  230 (313)
Q Consensus       185 --~~--~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~  230 (313)
                        ..  .+.+++++++|+|+.++ .+.+++..+++...+.   +.-+|..
T Consensus       108 ~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~---~ip~v~~  153 (245)
T PRK05690        108 NARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAA---KKPLVSG  153 (245)
T ss_pred             eccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHh---CCEEEEe
Confidence              00  12456778888888776 4666777777654443   3335554

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.53  E-value=0.019  Score=53.43  Aligned_cols=89  Identities=17%  Similarity=0.218  Sum_probs=65.2

Q ss_pred             cCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCCCcc-c---------cc--ccccCCHHHHHhhCCeeEEecCCC
Q 021361          142 FSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRSEKS-D---------AN--YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       142 l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~~~~-~---------~~--~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +.|++|+++|-|   ++.++++..+..+|++|.+..|..-. .         .+  .....++++.++++|+|..-. ..
T Consensus       148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~  226 (301)
T TIGR00670       148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ  226 (301)
T ss_pred             CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc
Confidence            789999999995   99999999999999999988876431 1         12  223578999999999887732 11


Q ss_pred             -------hHh-----hhccCHHHHhhcCCCcEEEEcC
Q 021361          207 -------EET-----HHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       207 -------~~t-----~~~i~~~~l~~mk~ga~~in~~  231 (313)
                             ++.     ..-++.+.++.++++++|..+.
T Consensus       227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl  263 (301)
T TIGR00670       227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL  263 (301)
T ss_pred             ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence                   010     2245677788888888887664

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.53  E-value=0.015  Score=52.55  Aligned_cols=88  Identities=15%  Similarity=0.276  Sum_probs=59.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS  224 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~g  224 (313)
                      .++-|+|.|.+++.+++.++.+|++|+++|++++......        +..++.+....|          .+.+..+.++
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~--------~~~~~~~~~~~~----------~~~~~~~~~~  162 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDL--------PDGVATLVTDEP----------EAEVAEAPPG  162 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccC--------CCCceEEecCCH----------HHHHhcCCCC
Confidence            4899999999999999999999999999997754211111        123332221111          1222335567


Q ss_pred             cEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          225 GILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       225 a~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                      +.+|-+.++--.|.+.|..+|++...
T Consensus       163 t~vvi~th~h~~D~~~L~~aL~~~~~  188 (246)
T TIGR02964       163 SYFLVLTHDHALDLELCHAALRRGDF  188 (246)
T ss_pred             cEEEEEeCChHHHHHHHHHHHhCCCC
Confidence            77777788888899988888854433

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.48  E-value=0.0089  Score=54.04  Aligned_cols=97  Identities=21%  Similarity=0.235  Sum_probs=67.7

Q ss_pred             cccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcc-----------cccccccCCHHHHHhhCCeeEEecCC
Q 021361          138 LGSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKS-----------DANYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       138 ~~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~-----------~~~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .|.+|+..+++|+|+ |.||..+|+.|.+.+.+....-|....           ..+.....|++....+.|+++.....
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~  240 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM  240 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence            478999999999997 999999999999988875544433221           12223345666666666666665533


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                        .+-..|+.+.   +|||+.+++-|+..=+|+.
T Consensus       241 --~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         241 --PKGVEIFPQH---LKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             --CCCceechhh---ccCCeEEEcCCcCcccccc
Confidence              3344577754   7999999999988766654

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.45  E-value=0.025  Score=53.48  Aligned_cols=91  Identities=11%  Similarity=0.119  Sum_probs=66.7

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEec
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      .+.|++|+++|= .++.++++..+..+|++|.++.|..-..              .+  +....++++.++++|+|..-.
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  230 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV  230 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence            588999999997 6788999999999999999888764211              01  223578999999999998822


Q ss_pred             -----CCC---hH------hhhccCHHHHhhcCCCcEEEEcC
Q 021361          204 -----SLT---EE------THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       204 -----p~~---~~------t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                           ...   ++      ....++++.++.+|++++|..+.
T Consensus       231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL  272 (338)
T PRK02255        231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL  272 (338)
T ss_pred             cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence                 110   01      02456788888888888888776

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.45  E-value=0.012  Score=57.95  Aligned_cols=108  Identities=13%  Similarity=0.164  Sum_probs=69.7

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------cccccc--CCHHHHHhhCCeeEEecCCChH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------ANYKYY--TNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~~~--~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      .+++++|+|+|+|..|.++|+.|+..|++|.++|+.....          .+....  ....+.+.++|+|+.. |.-+.
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~   89 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI   89 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence            4678999999999999999999999999999999764311          122111  2234556789998886 43322


Q ss_pred             hh-----------hccCH-HHH-hhcCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          209 TH-----------HIVNR-KVI-DALGPSGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       209 t~-----------~~i~~-~~l-~~mk~ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                      +.           .++++ +.+ ...+...+-|--+.|+.-..+-+...|+...
T Consensus        90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g  143 (458)
T PRK01710         90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG  143 (458)
T ss_pred             CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            21           12222 222 2223234556666788888887888887533

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.44  E-value=0.015  Score=56.41  Aligned_cols=86  Identities=13%  Similarity=0.205  Sum_probs=62.8

Q ss_pred             cCCCEEEEEcC----------ChhHHHHHHHHHhcCCcEEEECCCCcccc--cccccCCHHHHHhhCCeeEEecCCChHh
Q 021361          142 FSGKSVGIVGL----------GRIGTAIAKRVEAFGCPISYHSRSEKSDA--NYKYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       142 l~g~~vgiiG~----------G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      +.|++|+|+|+          .+-...+++.|...|++|.+|||......  ......++++.++.+|+|++++...+ .
T Consensus       311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~-~  389 (411)
T TIGR03026       311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDE-F  389 (411)
T ss_pred             ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHH-H
Confidence            68999999998          45778899999999999999999754321  11224688999999999999997643 2


Q ss_pred             hhccCHHHHh-hcCCCcEEEEc
Q 021361          210 HHIVNRKVID-ALGPSGILINI  230 (313)
Q Consensus       210 ~~~i~~~~l~-~mk~ga~~in~  230 (313)
                      + -++-+.++ .|+ ..+++|.
T Consensus       390 ~-~~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       390 K-DLDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             h-ccCHHHHHHhcC-CCEEEeC
Confidence            2 24544444 354 4577774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.38  E-value=0.0075  Score=55.99  Aligned_cols=57  Identities=12%  Similarity=0.237  Sum_probs=42.1

Q ss_pred             EEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc---------------cc--ccCCHHHHHhhCCeeEEecC
Q 021361          147 VGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN---------------YK--YYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       147 vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~---------------~~--~~~~l~~l~~~aDvv~l~~p  204 (313)
                      |+|||.|.||..+|..+...|. +|+.+|+.++...+               ..  ...+. +.+++||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999999987665 99999987643110               01  12344 45899999999774

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.37  E-value=0.0095  Score=53.63  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~  176 (313)
                      ..|++++|.|+|.|.+|..+|+.|...|. ++..+|+.
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46899999999999999999999999997 47777754

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.37  E-value=0.027  Score=52.53  Aligned_cols=90  Identities=12%  Similarity=0.187  Sum_probs=65.6

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-----------cc--ccccCCHHHHHhhCCeeEEec----
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-----------AN--YKYYTNIIDLASNCQILIVAC----  203 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----------~~--~~~~~~l~~l~~~aDvv~l~~----  203 (313)
                      +.|++|+++|- +++.++++..+..+|++|.+..|..-..           .+  .....++++.++++|+|..-.    
T Consensus       150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~  229 (304)
T PRK00779        150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM  229 (304)
T ss_pred             cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence            77899999998 7899999999999999999888754221           11  223578999999999998741    


Q ss_pred             CCC---hH-----hhhccCHHHHhhcCCCcEEEEcC
Q 021361          204 SLT---EE-----THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       204 p~~---~~-----t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ...   .+     ...-++++.++.+|++++|..+.
T Consensus       230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl  265 (304)
T PRK00779        230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL  265 (304)
T ss_pred             ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence            110   11     12345677787788888887765

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.33  E-value=0.025  Score=53.44  Aligned_cols=91  Identities=10%  Similarity=0.069  Sum_probs=65.9

Q ss_pred             ccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .+.|++|++||=+  ++.++++..+..+|++|.++.|..-..              .+  +....++++.++++|+|..-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999986  688999999999999999888754211              12  22457899999999999873


Q ss_pred             c----CCC-h--Hh------hhccCHHHHhhc-CCCcEEEEcC
Q 021361          203 C----SLT-E--ET------HHIVNRKVIDAL-GPSGILINIG  231 (313)
Q Consensus       203 ~----p~~-~--~t------~~~i~~~~l~~m-k~ga~~in~~  231 (313)
                      .    ... +  ..      ...++.+.++.. |++++|..+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            2    110 0  11      224677888876 7889988875

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.30  E-value=0.0085  Score=58.44  Aligned_cols=60  Identities=13%  Similarity=0.158  Sum_probs=44.7

Q ss_pred             EEEEEcCChhHHHHHH---HH---HhcCCcEEEECCCCcccc-----------------cccccCCHHHHHhhCCeeEEe
Q 021361          146 SVGIVGLGRIGTAIAK---RV---EAFGCPISYHSRSEKSDA-----------------NYKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~---~l---~~~g~~V~~~~~~~~~~~-----------------~~~~~~~l~~l~~~aDvv~l~  202 (313)
                      +|+|||.|.+|...+-   .+   ...|.+|..||+.++...                 ......++++.++.||+|+.+
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a   81 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT   81 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence            7999999999998555   22   334678999999864311                 112346788999999999999


Q ss_pred             cCC
Q 021361          203 CSL  205 (313)
Q Consensus       203 ~p~  205 (313)
                      +|.
T Consensus        82 i~~   84 (423)
T cd05297          82 IQV   84 (423)
T ss_pred             eEe
Confidence            983

linked to 3D####ucture

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.27  E-value=0.013  Score=54.77  Aligned_cols=91  Identities=22%  Similarity=0.316  Sum_probs=59.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------ccc--cCCHHHHHhhCCeeEEecCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKY--YTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~--~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      .||+|||.|.+|..+|-.|...|.  ++..+|...+...+              ...  ..+.++ +++||+|+++.-..
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~   82 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR   82 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence            589999999999999999986665  68889986643211              011  245555 89999999965432


Q ss_pred             h---Hhh-hccC---------HHHHhhcCCCcEEEEcCCCCccCH
Q 021361          207 E---ETH-HIVN---------RKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       207 ~---~t~-~~i~---------~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      +   .++ .++.         .+.+....|.+++++++  .++|.
T Consensus        83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~  125 (312)
T cd05293          83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDI  125 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHH
Confidence            1   122 1111         12334457889999987  44443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.27  E-value=0.019  Score=54.48  Aligned_cols=61  Identities=25%  Similarity=0.273  Sum_probs=42.8

Q ss_pred             EEEEEcCChhHHHHHHHHHh-cCCcEEE-ECCCCccc------------------------ccccccCCHHHHHhhCCee
Q 021361          146 SVGIVGLGRIGTAIAKRVEA-FGCPISY-HSRSEKSD------------------------ANYKYYTNIIDLASNCQIL  199 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~-~g~~V~~-~~~~~~~~------------------------~~~~~~~~l~~l~~~aDvv  199 (313)
                      +|||+|+|.||+.+++.+.. -++++.+ +++.++..                        .+.....++++++.++|+|
T Consensus         3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV   82 (341)
T PRK04207          3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV   82 (341)
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE
Confidence            79999999999999998875 4677654 44333100                        0111234678888899999


Q ss_pred             EEecCCC
Q 021361          200 IVACSLT  206 (313)
Q Consensus       200 ~l~~p~~  206 (313)
                      +.|+|..
T Consensus        83 IdaT~~~   89 (341)
T PRK04207         83 VDATPGG   89 (341)
T ss_pred             EECCCch
Confidence            9998754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.27  E-value=0.037  Score=51.19  Aligned_cols=103  Identities=13%  Similarity=0.164  Sum_probs=74.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCC--CcccccccccCCHHHHHhhCCeeEEecCCChHhh----------h
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS--EKSDANYKYYTNIIDLASNCQILIVACSLTEETH----------H  211 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~--~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~----------~  211 (313)
                      |++++|||.-.=-..+++.|...|++|..|...  ...-.++..+.+.++.++++|+|++=+|.+.+..          -
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~   80 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV   80 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence            689999999998999999999999998776543  2222345555667777999999999998655421          1


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      -++++.+++|+++++ +-+|    ++..++.++.++.++.
T Consensus        81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~  115 (287)
T TIGR02853        81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK  115 (287)
T ss_pred             cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence            246889999997665 4444    3445555566777766

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.26  E-value=0.33  Score=44.57  Aligned_cols=180  Identities=19%  Similarity=0.200  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhc----CC-------cEEE
Q 021361          104 VADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAF----GC-------PISY  172 (313)
Q Consensus       104 vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~----g~-------~V~~  172 (313)
                      +|=.+++-+++.+|-                   .++.|...+|.|+|.|..|-.+|+.+...    |.       +++.
T Consensus         4 Ta~V~lAgllnAlk~-------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~   64 (279)
T cd05312           4 TAAVALAGLLAALRI-------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWL   64 (279)
T ss_pred             HHHHHHHHHHHHHHH-------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEE
Confidence            555677777777663                   24668899999999999999999999876    87       6888


Q ss_pred             ECCCCc-----cc-cc-----c---c--ccCCHHHHHh--hCCeeEEecCCChHhhhccCHHHHhhcC---CCcEEEEcC
Q 021361          173 HSRSEK-----SD-AN-----Y---K--YYTNIIDLAS--NCQILIVACSLTEETHHIVNRKVIDALG---PSGILINIG  231 (313)
Q Consensus       173 ~~~~~~-----~~-~~-----~---~--~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~~l~~mk---~ga~~in~~  231 (313)
                      +|+..-     .. ..     .   .  ...++.|+++  ++|+++=+.    ...+.+.++.++.|.   +..++.=.|
T Consensus        65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLS  140 (279)
T cd05312          65 VDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALS  140 (279)
T ss_pred             EcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence            887641     00 00     0   1  2358999999  889877533    224789999999998   889999999


Q ss_pred             CCCccCHHHHHHHHH--hCC-ceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHHHH
Q 021361          232 RGAHIDEPELVSALL--EGR-LAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEET-----SKAMADLVIENLVAH  302 (313)
Q Consensus       232 rg~~vd~~al~~al~--~g~-~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~-----~~~~~~~~~~ni~~~  302 (313)
                      ......|-.-.++.+  +|+ +.+.+.-.-+-+..-. ...-+..|+++=|=++-..-.+     .++|...+++-|-.+
T Consensus       141 NPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~  220 (279)
T cd05312         141 NPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASL  220 (279)
T ss_pred             CcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHh
Confidence            887644444444443  466 4322221111111001 1355678999999876433222     356666666666666


Q ss_pred             HcCC
Q 021361          303 FSNK  306 (313)
Q Consensus       303 ~~g~  306 (313)
                      ..-+
T Consensus       221 ~~~~  224 (279)
T cd05312         221 VTDE  224 (279)
T ss_pred             CCcc
Confidence            5543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.26  E-value=0.011  Score=48.48  Aligned_cols=85  Identities=15%  Similarity=0.272  Sum_probs=51.0

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcE
Q 021361          147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGI  226 (313)
Q Consensus       147 vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~  226 (313)
                      +-|+|.|.+++.+++.++.+|++|.++|++++.             +..++-+. +.+. ++..     +.+ .+.+++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~~-~~~~-~~~~-----~~~-~~~~~t~   59 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEVI-CIPP-DDIL-----EDL-EIDPNTA   59 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH-HHHH-----HHC--S-TT-E
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCccE-ecCh-HHHH-----hcc-CCCCCeE
Confidence            468999999999999999999999999987541             12344322 2221 1111     111 3666777


Q ss_pred             EEEcCCCCccCHHHHHHHHHhCCceEEE
Q 021361          227 LINIGRGAHIDEPELVSALLEGRLAGAG  254 (313)
Q Consensus       227 ~in~~rg~~vd~~al~~al~~g~~~ga~  254 (313)
                      +| +.++.-.|.+.|.++|++. ..+.+
T Consensus        60 Vv-~th~h~~D~~~L~~~l~~~-~~YiG   85 (136)
T PF13478_consen   60 VV-MTHDHELDAEALEAALASP-ARYIG   85 (136)
T ss_dssp             EE---S-CCCHHHHHHHHTTSS--SEEE
T ss_pred             EE-EcCCchhHHHHHHHHHcCC-CCEEE
Confidence            66 8888889999999888873 44343

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.24  E-value=0.017  Score=55.47  Aligned_cols=37  Identities=19%  Similarity=0.330  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~  176 (313)
                      ..|++++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 58888875

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=96.23  E-value=0.019  Score=53.59  Aligned_cols=91  Identities=22%  Similarity=0.291  Sum_probs=63.3

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHh-------cCCcEEEECCCCc--c------------c------c------cccccCC
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEA-------FGCPISYHSRSEK--S------------D------A------NYKYYTN  188 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~-------~g~~V~~~~~~~~--~------------~------~------~~~~~~~  188 (313)
                      ..-++|+|||.|+.|+.+|+.+..       |..+|..|-+...  .            .      .      ......+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            345799999999999999999863       2234543332211  1            0      0      1223478


Q ss_pred             HHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          189 IIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       189 l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      +.+++.+||+++..+|.+- +.. +.++...+.|+++..|....|=
T Consensus        99 l~ea~~dADilvf~vPhQf-~~~-ic~~l~g~vk~~~~aISL~KG~  142 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVPHQF-IPR-ICEQLKGYVKPGATAISLIKGV  142 (372)
T ss_pred             HHHHhccCCEEEEeCChhh-HHH-HHHHHhcccCCCCeEEEeecce
Confidence            9999999999999999632 222 4566888899999999988763

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.22  E-value=0.14  Score=46.36  Aligned_cols=176  Identities=18%  Similarity=0.138  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC-----------cEEE
Q 021361          104 VADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC-----------PISY  172 (313)
Q Consensus       104 vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-----------~V~~  172 (313)
                      +|=-+++-+++.+|-                   .|+.|.+.+|.|+|.|..|-.+|+.|...+.           +++.
T Consensus         4 TaaV~lAgllnAlk~-------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~   64 (254)
T cd00762           4 TASVAVAGLLAALKV-------------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWX   64 (254)
T ss_pred             hHHHHHHHHHHHHHH-------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEE
Confidence            455677777777662                   2456889999999999999999999987665           5888


Q ss_pred             ECCCCc----c--c----cc-------ccccCCHHHHHh--hCCeeEEecCCChHhhhccCHHHHhhcC---CCcEEEEc
Q 021361          173 HSRSEK----S--D----AN-------YKYYTNIIDLAS--NCQILIVACSLTEETHHIVNRKVIDALG---PSGILINI  230 (313)
Q Consensus       173 ~~~~~~----~--~----~~-------~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~~l~~mk---~ga~~in~  230 (313)
                      +|+..-    .  .    ..       .....++.|+++  +.|+++=..    ...+.+.++.++.|.   +..++.=.
T Consensus        65 vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaL  140 (254)
T cd00762          65 VDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFAL  140 (254)
T ss_pred             ECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEEC
Confidence            887531    0  0    00       012358999999  899877533    235789999999998   88999999


Q ss_pred             CCCCccCHHHHHHHHHh--CC-ceEEEccCCCCCCCCCc---ccCCCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHH
Q 021361          231 GRGAHIDEPELVSALLE--GR-LAGAGLDVYENEPEVPE---QMLGLNNVVLLPHVGSDTEET-----SKAMADLVIENL  299 (313)
Q Consensus       231 ~rg~~vd~~al~~al~~--g~-~~ga~lDV~~~EP~~~~---~l~~~pnvi~TPHia~~t~~~-----~~~~~~~~~~ni  299 (313)
                      |.....-|-.-.++.+-  |+ +.+-+.-.+..+-  +.   ..-+..|+++=|=++-..-.+     .++|...+++-|
T Consensus       141 SNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~--~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aL  218 (254)
T cd00762         141 SNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL--NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAI  218 (254)
T ss_pred             CCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc--CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHH
Confidence            88776444333344433  43 3322221111111  11   244778999999776332222     255555555555


Q ss_pred             HHHHc
Q 021361          300 VAHFS  304 (313)
Q Consensus       300 ~~~~~  304 (313)
                      -.+..
T Consensus       219 A~~v~  223 (254)
T cd00762         219 ASSVT  223 (254)
T ss_pred             HhhCC
Confidence            55544

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.22  E-value=0.011  Score=56.62  Aligned_cols=58  Identities=24%  Similarity=0.447  Sum_probs=44.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc--c--c---cc---CCHHHHHhhCCeeEE
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN--Y--K---YY---TNIIDLASNCQILIV  201 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--~--~---~~---~~l~~l~~~aDvv~l  201 (313)
                      .++|||||.|..|+.+++.++.+|++|.++|+.+.....  +  .   .+   ..+.++++.||+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            378999999999999999999999999999987654211  0  0   01   236667888998764

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.16  E-value=0.017  Score=54.83  Aligned_cols=83  Identities=16%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhc-CCcEE-EECCCC--cccc--------cc-c-ccC--CHHHHHhhCCeeEEecCCCh
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAF-GCPIS-YHSRSE--KSDA--------NY-K-YYT--NIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~--~~~~--------~~-~-~~~--~l~~l~~~aDvv~l~~p~~~  207 (313)
                      .+|+|+|. |.+|+.+++.|..+ +.++. .++++.  .+..        +. . .+.  +.+++..++|+|++|+|...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            37999998 99999999999977 67776 335332  1110        10 0 112  45666678999999999642


Q ss_pred             HhhhccCHHHHhh-cCCCcEEEEcCCC
Q 021361          208 ETHHIVNRKVIDA-LGPSGILINIGRG  233 (313)
Q Consensus       208 ~t~~~i~~~~l~~-mk~ga~~in~~rg  233 (313)
                      + .     +.... .+.|..+|+.|-.
T Consensus        81 s-~-----~~~~~~~~~G~~VIDlS~~  101 (346)
T TIGR01850        81 S-A-----ELAPELLAAGVKVIDLSAD  101 (346)
T ss_pred             H-H-----HHHHHHHhCCCEEEeCChh
Confidence            2 2     22222 2568889998843

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.11  E-value=0.023  Score=52.87  Aligned_cols=108  Identities=19%  Similarity=0.250  Sum_probs=70.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc------ccccc-----------ccCCHHHHHhhCCeeEEecCCCh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS------DANYK-----------YYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~------~~~~~-----------~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      .+|+|+|.|.||.-+|-+|...|.+|..++|..+.      ..+..           ......+....+|+|++++-.. 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence            37999999999999999999999999999986421      11110           0011112245789999998643 


Q ss_pred             HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEc
Q 021361          208 ETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGL  255 (313)
Q Consensus       208 ~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~l  255 (313)
                      ++...+ +.....+.+++.+|-.- -++-.++.+.+.+.+.++.++..
T Consensus        82 ~~~~al-~~l~~~l~~~t~vv~lQ-NGv~~~e~l~~~~~~~~v~~g~~  127 (305)
T PRK05708         82 DAEPAV-ASLAHRLAPGAELLLLQ-NGLGSQDAVAARVPHARCIFASS  127 (305)
T ss_pred             hHHHHH-HHHHhhCCCCCEEEEEe-CCCCCHHHHHHhCCCCcEEEEEe
Confidence            333333 33555677888766653 34456677777776666665443

>PRK08328 hypothetical protein; Provisional

Probab=96.09  E-value=0.018  Score=51.51  Aligned_cols=37  Identities=27%  Similarity=0.449  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~  176 (313)
                      ..|++++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            56899999999999999999999999998 47777754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.08  E-value=0.0097  Score=53.01  Aligned_cols=64  Identities=17%  Similarity=0.282  Sum_probs=47.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc-------ccc-------cCCHHHH-HhhCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN-------YKY-------YTNIIDL-ASNCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-------~~~-------~~~l~~l-~~~aDvv~l~~p~~~~  208 (313)
                      +++.|+|+|.+|..+|+.|...|++|..+++..+....       ...       ...|.++ +.++|+++.++..+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~   79 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV   79 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence            47999999999999999999999999999987653211       111       1224444 6789999998876443

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.07  E-value=0.02  Score=54.61  Aligned_cols=84  Identities=13%  Similarity=0.270  Sum_probs=62.2

Q ss_pred             cCCCEEEEEcCC----------hhHHHHHHHHHhcCCcEEEECCCCcccc-----cccccCCHHHHHhhCCeeEEecCCC
Q 021361          142 FSGKSVGIVGLG----------RIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       142 l~g~~vgiiG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      |+||+|||+|+-          .-...++++|+..|.+|.+|||-.....     +.....++++++++||+++++..+.
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~  387 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD  387 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH
Confidence            889999999985          3567899999999999999999764321     2455689999999999999988653


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEE
Q 021361          207 EETHHIVNRKVIDALGPSGILIN  229 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in  229 (313)
                      + .+ -++-+.+ .|| +.++++
T Consensus       388 e-f~-~~d~~~~-~m~-~~~v~D  406 (414)
T COG1004         388 E-FR-DLDFEKL-LMK-TPVVID  406 (414)
T ss_pred             H-Hh-ccChhhh-hcc-CCEEEe
Confidence            2 22 2343344 565 455555

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.06  E-value=0.013  Score=56.39  Aligned_cols=93  Identities=12%  Similarity=0.192  Sum_probs=60.9

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhc-CCcEEEECCCCcccc--c----------ccccCCHHH-HHhhCCeeEEecCCCh
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAF-GCPISYHSRSEKSDA--N----------YKYYTNIID-LASNCQILIVACSLTE  207 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~--~----------~~~~~~l~~-l~~~aDvv~l~~p~~~  207 (313)
                      .-++|+|+|. |.+|+.+.+.|... +++|..+.+......  .          .....+++. .++++|+|++++|.. 
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-  115 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-  115 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-
Confidence            4568999998 89999999999887 778877654322110  0          001122222 258899999999853 


Q ss_pred             HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHH
Q 021361          208 ETHHIVNRKVIDALGPSGILINIGRGAHIDEPEL  241 (313)
Q Consensus       208 ~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al  241 (313)
                           ...+....|+.|..+|+.+..-..+.++.
T Consensus       116 -----~s~~i~~~~~~g~~VIDlSs~fRl~~~~~  144 (381)
T PLN02968        116 -----TTQEIIKALPKDLKIVDLSADFRLRDIAE  144 (381)
T ss_pred             -----HHHHHHHHHhCCCEEEEcCchhccCCccc
Confidence                 23344444567899999986655555433

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.04  E-value=0.037  Score=54.15  Aligned_cols=107  Identities=15%  Similarity=0.203  Sum_probs=69.7

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------cccc--ccCCHHHHHhhCCeeEEecCCChH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------ANYK--YYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~--~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      .+++|++.|+|.|.+|.++|+.|...|++|.++|+.....          .+..  .....++...++|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            3679999999999999999999999999999999875221          0111  112344566789999987654433


Q ss_pred             hhhc----------cC-HHHHhh-cCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          209 THHI----------VN-RKVIDA-LGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       209 t~~~----------i~-~~~l~~-mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      ...+          +. .+.+.. .+.-.+-|--+.|+..-.+-|...|+.
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            2211          11 112222 232244455557888888878888865

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.03  E-value=0.017  Score=50.31  Aligned_cols=37  Identities=19%  Similarity=0.352  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~  176 (313)
                      +.|++++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            579999999999999999999999999985 7888765

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.01  E-value=0.047  Score=51.02  Aligned_cols=89  Identities=16%  Similarity=0.259  Sum_probs=61.6

Q ss_pred             cCCCEEEEEcC---ChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCCh-----
Q 021361          142 FSGKSVGIVGL---GRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTE-----  207 (313)
Q Consensus       142 l~g~~vgiiG~---G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~-----  207 (313)
                      +.|++|+++|=   +++.++++..+..+|+ +|.+..|..-..     .......++++.++++|+|.. .....     
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~-~~~~~er~~~  233 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT-LRLQKERHDN  233 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE-Cccccccccc
Confidence            77999999998   5999999999999999 898888754221     113345789999999999987 22210     


Q ss_pred             -H----h--hhccCHHHHhhcCCCcEEEEcC
Q 021361          208 -E----T--HHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       208 -~----t--~~~i~~~~l~~mk~ga~~in~~  231 (313)
                       .    .  ...++.+.++.+|++++|.-+.
T Consensus       234 ~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcL  264 (310)
T PRK13814        234 SVDIDAFRGSFRLTPEKLYSAKPDAIVMHPG  264 (310)
T ss_pred             hhHHHHhCCCcccCHHHHHhcCCCCEEECCC
Confidence             0    0  1234555555566666665554

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.99  E-value=0.22  Score=51.93  Aligned_cols=156  Identities=13%  Similarity=0.173  Sum_probs=107.3

Q ss_pred             CCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC
Q 021361           89 KAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC  168 (313)
Q Consensus        89 ~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~  168 (313)
                      ..|++.|. +.++  +|=.+++-+++.+|-                   .|+.+...+|.|.|.|.-|-.+++.|...|.
T Consensus       152 ~~ip~f~D-D~~G--Ta~v~lA~l~na~~~-------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~  209 (752)
T PRK07232        152 MDIPVFHD-DQHG--TAIISAAALLNALEL-------------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGA  209 (752)
T ss_pred             cCCCeecc-ccch--HHHHHHHHHHHHHHH-------------------hCCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence            36899888 4444  666778888887663                   2567888999999999999999999999998


Q ss_pred             ---cEEEECCCCc----c---ccc-----c--cccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          169 ---PISYHSRSEK----S---DAN-----Y--KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       169 ---~V~~~~~~~~----~---~~~-----~--~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                         +++.+|+..-    .   ...     +  ....++.|+++.+|+++= +.    ..+.+.++.++.|.+..++.=.|
T Consensus       210 ~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG-~s----~~g~~~~~~v~~M~~~piifals  284 (752)
T PRK07232        210 KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLG-LS----AAGVLTPEMVKSMADNPIIFALA  284 (752)
T ss_pred             CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEE-cC----CCCCCCHHHHHHhccCCEEEecC
Confidence               6888887531    1   000     0  113589999999997664 32    25789999999999999999998


Q ss_pred             CCCcc-CHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCC
Q 021361          232 RGAHI-DEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVG  281 (313)
Q Consensus       232 rg~~v-d~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia  281 (313)
                      ....- ..+..+++ ..|.+.+-+   -..      .--+..|+++=|=++
T Consensus       285 NP~~E~~p~~a~~~-~~~~i~atG---rs~------~pnQ~NN~~~FPgi~  325 (752)
T PRK07232        285 NPDPEITPEEAKAV-RPDAIIATG---RSD------YPNQVNNVLCFPYIF  325 (752)
T ss_pred             CCCccCCHHHHHHh-cCCEEEEEC---CcC------CCCcccceeecchhh
Confidence            87752 22323322 223344222   111      124557888888665

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.99  E-value=0.032  Score=50.97  Aligned_cols=60  Identities=20%  Similarity=0.254  Sum_probs=43.3

Q ss_pred             EEEEEc-CChhHHHHHHHHHh-cCCcEE-EECCCCccc-------------ccccccCCHHHHHhhCCeeEEecCC
Q 021361          146 SVGIVG-LGRIGTAIAKRVEA-FGCPIS-YHSRSEKSD-------------ANYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~-------------~~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      +|+|+| +|.||+.+++.+.. -++++. ++|+.....             .+...+.+++++...+|+|+.+.|.
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p   78 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP   78 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence            799999 69999999999875 588864 577432211             1233457888885579999998853

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=95.97  E-value=0.029  Score=52.88  Aligned_cols=90  Identities=13%  Similarity=0.164  Sum_probs=64.4

Q ss_pred             cCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEec
Q 021361          142 FSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       142 l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      +.|++|++||-+  ++.++++..+..+|++|.+..|..-..              .+  .....+++++++++|+|..-+
T Consensus       153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  232 (331)
T PRK02102        153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV  232 (331)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            789999999997  789999999999999998887754221              11  223578999999999998842


Q ss_pred             CC-------ChH-----hhhccCHHHHh-hcCCCcEEEEcC
Q 021361          204 SL-------TEE-----THHIVNRKVID-ALGPSGILINIG  231 (313)
Q Consensus       204 p~-------~~~-----t~~~i~~~~l~-~mk~ga~~in~~  231 (313)
                      =.       .++     ...-++++.++ .+|++++|.-+.
T Consensus       233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence            10       011     12345677777 468888887765

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=95.97  E-value=0.051  Score=50.69  Aligned_cols=90  Identities=13%  Similarity=0.195  Sum_probs=65.5

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEec-
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVAC-  203 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~-  203 (313)
                      +.|.+|+++|- +++.++++..+..+|++|.+..|..-..              .+  .....++++.++++|+|..-. 
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w  225 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW  225 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            78999999997 6888999999999999998888654221              11  223578999999999998732 


Q ss_pred             -CCC-----hH-----hhhccCHHHHhhcCCCcEEEEcC
Q 021361          204 -SLT-----EE-----THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       204 -p~~-----~~-----t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                       ...     ++     ....++++.++.+|++++|.-+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl  264 (304)
T TIGR00658       226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL  264 (304)
T ss_pred             ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence             000     01     12356778888888888887765

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.97  E-value=0.036  Score=51.05  Aligned_cols=102  Identities=20%  Similarity=0.262  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc----cc------ccCCHHHHH--hhCCeeEEecCCCh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN----YK------YYTNIIDLA--SNCQILIVACSLTE  207 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~----~~------~~~~l~~l~--~~aDvv~l~~p~~~  207 (313)
                      ...|+++.|+|.|..+++++..|+..|+ +|++++|+.++...    ..      ......++-  .++|+|+.++|.--
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm  202 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM  202 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence            4579999999999999999999999996 69999998764211    00      011222221  16999999999743


Q ss_pred             Hhh---hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          208 ETH---HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       208 ~t~---~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      .-.   ..++   .+.++++.++.++--.+. +. .|++..++
T Consensus       203 ~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~T-plL~~A~~  240 (283)
T COG0169         203 AGPEGDSPVP---AELLPKGAIVYDVVYNPL-ET-PLLREARA  240 (283)
T ss_pred             CCCCCCCCCc---HHhcCcCCEEEEeccCCC-CC-HHHHHHHH
Confidence            322   1333   466888999999876664 33 44444444

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.96  E-value=0.016  Score=57.02  Aligned_cols=91  Identities=16%  Similarity=0.187  Sum_probs=59.6

Q ss_pred             cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------c-cccc--CCHHHHHhhCCeeEEecCCC
Q 021361          136 FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------N-YKYY--TNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       136 ~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~-~~~~--~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +|..-+|+||+|.|||.|.++..=++.|..+|++|.++++.-....      + ....  .=..+.++.+++|+.++...
T Consensus         4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~   83 (457)
T PRK10637          4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD   83 (457)
T ss_pred             eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH
Confidence            3556689999999999999999988999999999999987643221      0 1100  11234567888877776543


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      +     +|.+.....+...+++|++
T Consensus        84 ~-----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         84 A-----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             H-----HhHHHHHHHHHcCcEEEEC
Confidence            2     3444444444445555543

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.96  E-value=0.036  Score=54.51  Aligned_cols=108  Identities=21%  Similarity=0.199  Sum_probs=68.1

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEec--CCC-h----H
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVAC--SLT-E----E  208 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~--p~~-~----~  208 (313)
                      ++.|++|.|+|+|..|.++|+.|+..|++|.++|......     .+......-.+-+.++|+|+.+-  |.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            4778999999999999999999999999999999754311     12221111122356799877533  211 1    1


Q ss_pred             hh---h----ccCH-HHHhh-c-----CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          209 TH---H----IVNR-KVIDA-L-----GPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       209 t~---~----~i~~-~~l~~-m-----k~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      ..   .    ++.+ +.+.. +     +...+-|.-+.|+.--.+-+...|+..
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~  139 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA  139 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            11   1    1332 22222 2     333556666689988888888888763

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.94  E-value=0.037  Score=48.86  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~  176 (313)
                      ..|+.++|+|||+|.+|..+|+.|...|.. +..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            468999999999999999999999999985 8888765

>PRK08223 hypothetical protein; Validated

Probab=95.92  E-value=0.027  Score=51.87  Aligned_cols=80  Identities=11%  Similarity=0.147  Sum_probs=54.8

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------c--c--
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------Y--K--  184 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~--~--  184 (313)
                      ..|++.+|.|||+|.+|..+++.|...|. ++..+|...-.             ..+                 .  .  
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~  102 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF  102 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            46999999999999999999999999998 47776643210             000                 0  0  


Q ss_pred             ----ccCCHHHHHhhCCeeEEecCCC-hHhhhccCHHHHh
Q 021361          185 ----YYTNIIDLASNCQILIVACSLT-EETHHIVNRKVID  219 (313)
Q Consensus       185 ----~~~~l~~l~~~aDvv~l~~p~~-~~t~~~i~~~~l~  219 (313)
                          ...+.+++++++|+|+-++..- -+++.+++..-.+
T Consensus       103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~  142 (287)
T PRK08223        103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ  142 (287)
T ss_pred             ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence                0135678888899888666321 2567777765433

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.89  E-value=0.014  Score=55.81  Aligned_cols=79  Identities=14%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------cc--c-
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------YK--Y-  185 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~~--~-  185 (313)
                      ..|++++|.|||+|.+|..+++.|...|. ++..+|...-.             ..+                 ..  . 
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            57999999999999999999999999998 68887764210             000                 00  0 


Q ss_pred             -----cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          186 -----YTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       186 -----~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                           ..+..++++++|+|+.|+ .+.+++.++++...+
T Consensus       117 ~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~  154 (370)
T PRK05600        117 RERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEI  154 (370)
T ss_pred             eeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHH
Confidence                 124567888899887665 466777777764433

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.89  E-value=0.04  Score=54.49  Aligned_cols=98  Identities=11%  Similarity=0.187  Sum_probs=69.7

Q ss_pred             ccCCCEEEEEcC----------ChhHHHHHHHHHhcCCcEEEECCCCcccc---------------------------cc
Q 021361          141 KFSGKSVGIVGL----------GRIGTAIAKRVEAFGCPISYHSRSEKSDA---------------------------NY  183 (313)
Q Consensus       141 ~l~g~~vgiiG~----------G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------------------------~~  183 (313)
                      .+.|++|+|+|+          .+-...+++.|...|.+|.+||+.-....                           ..
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            588999999998          55788999999999999999999743210                           01


Q ss_pred             cccCCHHHHHhhCCeeEEecCCChHhhhccCHH-HHhhcCCCcEEEEcCCCCccCHHHHH
Q 021361          184 KYYTNIIDLASNCQILIVACSLTEETHHIVNRK-VIDALGPSGILINIGRGAHIDEPELV  242 (313)
Q Consensus       184 ~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~-~l~~mk~ga~~in~~rg~~vd~~al~  242 (313)
                      ..+.++.+.+++||+|++++...+ .+. ++-+ ..+.|++..+++|. |+ ++|.+.+.
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~  456 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR  456 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence            223466789999999999997643 232 3433 35557766688884 54 45765554

>PRK12862 malic enzyme; Reviewed

Probab=95.87  E-value=0.27  Score=51.45  Aligned_cols=155  Identities=12%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC-
Q 021361           90 AVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC-  168 (313)
Q Consensus        90 gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-  168 (313)
                      +|++.|. +.++  +|=.+++-+++.+|-                   .|+.+...+|.|.|.|.-|-.+|+.|...|. 
T Consensus       161 ~ip~f~D-D~~G--Ta~v~la~l~~a~~~-------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  218 (763)
T PRK12862        161 KIPVFHD-DQHG--TAIIVAAALLNGLKL-------------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVK  218 (763)
T ss_pred             CCceEec-Cccc--HHHHHHHHHHHHHHH-------------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence            6999998 4444  666778888887663                   2567889999999999999999999999998 


Q ss_pred             --cEEEECCCCc----c---ccc-----c--cccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          169 --PISYHSRSEK----S---DAN-----Y--KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       169 --~V~~~~~~~~----~---~~~-----~--~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                        +++.+|+..-    .   ...     +  ....++.|+++.+|+++=..     +.+.+.++.++.|.+..++.=.|.
T Consensus       219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifalsN  293 (763)
T PRK12862        219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFALAN  293 (763)
T ss_pred             cccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeCCC
Confidence              6888886531    0   000     0  11358999999999776532     257899999999999999999887


Q ss_pred             CCcc-CHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCC
Q 021361          233 GAHI-DEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVG  281 (313)
Q Consensus       233 g~~v-d~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia  281 (313)
                      ...- ..+..+++ ..|.+.+-+-   .      ..--+..|+++=|=++
T Consensus       294 P~~E~~p~~a~~~-~~~~i~atGr---s------~~p~Q~NN~~~FPgi~  333 (763)
T PRK12862        294 PTPEILPEEARAV-RPDAIIATGR---S------DYPNQVNNVLCFPYIF  333 (763)
T ss_pred             CcccCCHHHHHHh-cCCEEEEECC---c------CCCCcccceeeccchh
Confidence            7642 22223332 2233442221   1      1124567888888766

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.86  E-value=0.045  Score=51.85  Aligned_cols=107  Identities=12%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc----------CCcEE-EECCCCc-------cc---------cc-cc------ccCCHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF----------GCPIS-YHSRSEK-------SD---------AN-YK------YYTNII  190 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~----------g~~V~-~~~~~~~-------~~---------~~-~~------~~~~l~  190 (313)
                      -+|||+|+|.||+.+++.+...          +++|. ++|++..       ..         .+ ..      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            3799999999999999998754          45654 4554321       00         00 00      123788


Q ss_pred             HHHh--hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc-cCHHHHHHHHHhCCce
Q 021361          191 DLAS--NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH-IDEPELVSALLEGRLA  251 (313)
Q Consensus       191 ~l~~--~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~-vd~~al~~al~~g~~~  251 (313)
                      +++.  +.|+|+.++|...++...--.-....|+.|.-+|....+.+ ...+.|.++.++.+..
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~  146 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR  146 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence            8884  68999999986544322111222455666766665433333 2456777777776554

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.85  E-value=0.047  Score=53.11  Aligned_cols=91  Identities=14%  Similarity=0.197  Sum_probs=66.1

Q ss_pred             ccCCCEEEEEcCC---hhHHHHHHHHHhc-CCcEEEECCCCccc-c---------c--ccccCCHHHHHhhCCeeEEecC
Q 021361          141 KFSGKSVGIVGLG---RIGTAIAKRVEAF-GCPISYHSRSEKSD-A---------N--YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       141 ~l~g~~vgiiG~G---~iG~~~a~~l~~~-g~~V~~~~~~~~~~-~---------~--~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .+.|++|+++|-+   ++.++++..+..+ |++|.+..|..-.. .         +  +..+.++++.++++|+|....-
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            4889999999994   8999999998876 99998888754321 0         1  2335789999999999988442


Q ss_pred             CC-----hH-----hhhccCHHHHhh-cCCCcEEEEcC
Q 021361          205 LT-----EE-----THHIVNRKVIDA-LGPSGILINIG  231 (313)
Q Consensus       205 ~~-----~~-----t~~~i~~~~l~~-mk~ga~~in~~  231 (313)
                      -.     +.     ....++.+.++. .|++++|..+.
T Consensus       318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL  355 (429)
T PRK11891        318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL  355 (429)
T ss_pred             hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence            10     10     113457788887 88888888665

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.85  E-value=0.023  Score=55.47  Aligned_cols=65  Identities=17%  Similarity=0.252  Sum_probs=48.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccc-------cCCHHHH-HhhCCeeEEecCCChHh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKY-------YTNIIDL-ASNCQILIVACSLTEET  209 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~-------~~~l~~l-~~~aDvv~l~~p~~~~t  209 (313)
                      ++|.|+|+|.+|+.+++.|...|++|.+++++++..      .+...       ...++++ +.++|.|+++++....+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n   79 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETN   79 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHH
Confidence            379999999999999999999999999999876431      11111       1234445 67899999999864443

>PLN02342 ornithine carbamoyltransferase

Probab=95.83  E-value=0.089  Score=49.91  Aligned_cols=90  Identities=13%  Similarity=0.139  Sum_probs=65.3

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc----------c---cccccCCHHHHHhhCCeeEEec----
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD----------A---NYKYYTNIIDLASNCQILIVAC----  203 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~---~~~~~~~l~~l~~~aDvv~l~~----  203 (313)
                      +.|++|+++|= .++.++++..+..+|++|.+..|..-..          .   .+....++++.++++|+|..-.    
T Consensus       192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~  271 (348)
T PLN02342        192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM  271 (348)
T ss_pred             cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc
Confidence            78999999997 3578888889999999998888754221          1   1234578999999999998752    


Q ss_pred             CCChH--------hhhccCHHHHhhcCCCcEEEEcC
Q 021361          204 SLTEE--------THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       204 p~~~~--------t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      -..+.        ....++++.++.+|++++|..+.
T Consensus       272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL  307 (348)
T PLN02342        272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL  307 (348)
T ss_pred             ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence            11111        12456788888888888888775

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.83  E-value=0.015  Score=55.39  Aligned_cols=37  Identities=16%  Similarity=0.312  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~  176 (313)
                      ..|++++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            56899999999999999999999999998 47777754

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.81  E-value=0.031  Score=53.02  Aligned_cols=89  Identities=16%  Similarity=0.239  Sum_probs=55.5

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhc-CCcEE-EECCCCccc-cc-----cc-----ccCCHHH-HHhhCCeeEEecCCChHh
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAF-GCPIS-YHSRSEKSD-AN-----YK-----YYTNIID-LASNCQILIVACSLTEET  209 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~-~~-----~~-----~~~~l~~-l~~~aDvv~l~~p~~~~t  209 (313)
                      .+|+|+|. |.+|+.+++.|... ++++. +.++..... ..     ..     .+.++++ ...++|+|++|+|...+.
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~   82 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM   82 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence            58999997 99999999999876 67764 455432211 00     11     1223333 456899999999964332


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      . + -.   ..++.|..+||.|-.=-.+.
T Consensus        83 ~-~-v~---~a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         83 D-L-AP---QLLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             H-H-HH---HHHhCCCEEEECCcccCCCC
Confidence            2 1 11   22356899999985544433

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.81  E-value=0.016  Score=54.02  Aligned_cols=60  Identities=17%  Similarity=0.252  Sum_probs=45.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhcC--CcEEEECCCCccccc-------cc--------ccCCHHHHHhhCCeeEEecCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFG--CPISYHSRSEKSDAN-------YK--------YYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~-------~~--------~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +|+|||.|.+|..+|..|...|  .+|..+|+......+       ..        ...+. +.+++||+|+++.+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~   78 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN   78 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence            7999999999999999999888  479999987643211       00        01233 5588999999999863

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.77  E-value=0.022  Score=56.72  Aligned_cols=109  Identities=16%  Similarity=0.156  Sum_probs=67.8

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------c--ccccc--CCHHHHHhhCCeeEEec--CCC--
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------A--NYKYY--TNIIDLASNCQILIVAC--SLT--  206 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------~--~~~~~--~~l~~l~~~aDvv~l~~--p~~--  206 (313)
                      +.+++|.|+|+|..|.++|+.|+..|++|.++|......       .  +....  ....+.+.++|+|+..-  |.+  
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~   84 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA   84 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence            568999999999999999999999999999999654221       0  11111  12344566899998863  322  


Q ss_pred             ---hHh-------hhccCH-HHHh-hc--------CCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          207 ---EET-------HHIVNR-KVID-AL--------GPSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       207 ---~~t-------~~~i~~-~~l~-~m--------k~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                         |..       ..++.+ +.+. .+        ++-.+-|--+-|+---..-+...|++...
T Consensus        85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~  148 (498)
T PRK02006         85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK  148 (498)
T ss_pred             ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence               211       122322 2221 12        12244555557888777778888876443

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=95.77  E-value=0.034  Score=52.47  Aligned_cols=90  Identities=16%  Similarity=0.224  Sum_probs=64.9

Q ss_pred             cCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEec
Q 021361          142 FSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       142 l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      +.|++|++||-+  ++.++++..+..+|++|.+..|..-..              .+  .....++++.++++|+|..-.
T Consensus       153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~  232 (332)
T PRK04284        153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV  232 (332)
T ss_pred             cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence            779999999975  889999999999999999888753211              11  234578999999999998742


Q ss_pred             CC--------ChH-----hhhccCHHHHhhcC-CCcEEEEcC
Q 021361          204 SL--------TEE-----THHIVNRKVIDALG-PSGILINIG  231 (313)
Q Consensus       204 p~--------~~~-----t~~~i~~~~l~~mk-~ga~~in~~  231 (313)
                      =.        .++     ....++++.++.++ |+++|..+.
T Consensus       233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence            00        001     12345778888885 588888775

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.76  E-value=0.026  Score=53.38  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~  176 (313)
                      ..|+.++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999999 68888865

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.75  E-value=0.016  Score=49.04  Aligned_cols=62  Identities=18%  Similarity=0.210  Sum_probs=48.0

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc---ccc-------ccCCHHHHHhhCCeeEEecCCChH
Q 021361          147 VGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA---NYK-------YYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       147 vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---~~~-------~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      |.|+|. |.+|+.+++.|...|++|++..|++.+..   +.+       ...++.+.++.+|.|+.+++.+..
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence            678995 99999999999999999999999876432   111       123567788899999999975433

...

>PRK11579 putative oxidoreductase; Provisional

Probab=95.75  E-value=0.02  Score=54.10  Aligned_cols=64  Identities=14%  Similarity=0.219  Sum_probs=46.3

Q ss_pred             CEEEEEcCChhHHH-HHHHHHhc-CCcEE-EECCCCcccc----cccccCCHHHHHh--hCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTA-IAKRVEAF-GCPIS-YHSRSEKSDA----NYKYYTNIIDLAS--NCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~----~~~~~~~l~~l~~--~aDvv~l~~p~~~~  208 (313)
                      -+|||||+|.||+. .+..++.. ++++. ++|+..+...    +...+.+++++++  +.|+|++++|...+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H   77 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH   77 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            38999999999985 56666543 67865 5777654321    2345689999996  57999999997544

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=95.75  E-value=0.033  Score=46.25  Aligned_cols=84  Identities=15%  Similarity=0.241  Sum_probs=56.2

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccccc---ccCCHHHHHhhCCeeEEecCCChHhhhccC---H
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYK---YYTNIIDLASNCQILIVACSLTEETHHIVN---R  215 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~---~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~---~  215 (313)
                      ..|++|++||+=   +.+++.++..+.++.++|+.++......   .....++++++||+|++.-    .|  ++|   .
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTG----sT--lvN~Ti~   79 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITG----ST--LVNGTID   79 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEEC----HH--CCTTTHH
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEe----ee--eecCCHH
Confidence            468999999961   2277888888899999999885432211   2346788999999999854    22  243   3


Q ss_pred             HHHhhcCCCcEEEEcCCCC
Q 021361          216 KVIDALGPSGILINIGRGA  234 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~  234 (313)
                      ..|++.+++..++=+|-..
T Consensus        80 ~iL~~~~~~~~vil~GpS~   98 (147)
T PF04016_consen   80 DILELARNAREVILYGPSA   98 (147)
T ss_dssp             HHHHHTTTSSEEEEESCCG
T ss_pred             HHHHhCccCCeEEEEecCc
Confidence            4677777777777776443

; PDB: 3L5O_B 3NPG_A.

>PRK07411 hypothetical protein; Validated

Probab=95.75  E-value=0.025  Score=54.64  Aligned_cols=83  Identities=17%  Similarity=0.182  Sum_probs=57.6

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------cc----
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------YK----  184 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~~----  184 (313)
                      ..|+..+|+|||+|.+|..+++.|...|. ++..+|...-.             ..+                 .+    
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            46899999999999999999999999998 47777753210             000                 00    


Q ss_pred             --c--cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCC
Q 021361          185 --Y--YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGP  223 (313)
Q Consensus       185 --~--~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~  223 (313)
                        .  ..+..++++++|+|+.|+ .+.+++.++++...+.-+|
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence              0  123456888999887766 4667788887665554443

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=95.74  E-value=0.035  Score=52.40  Aligned_cols=91  Identities=10%  Similarity=0.126  Sum_probs=63.7

Q ss_pred             ccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .+.|++|++||-+  ++.++++..+..+|+++.++.|..-..              .+  .....++++.++++|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            4789999999976  689999999999999998888754211              11  23457899999999999874


Q ss_pred             cCCC--------h-----HhhhccCHHHHhhc-CCCcEEEEcC
Q 021361          203 CSLT--------E-----ETHHIVNRKVIDAL-GPSGILINIG  231 (313)
Q Consensus       203 ~p~~--------~-----~t~~~i~~~~l~~m-k~ga~~in~~  231 (313)
                      .=..        +     .....++++.++.. |++++|..+.
T Consensus       233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL  275 (336)
T PRK03515        233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL  275 (336)
T ss_pred             CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence            2000        0     01234566677764 6777777765

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.72  E-value=0.016  Score=57.53  Aligned_cols=106  Identities=13%  Similarity=0.217  Sum_probs=68.0

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cccccc--CCHHHHHhhCCeeEEecCCChHhh----
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYY--TNIIDLASNCQILIVACSLTEETH----  210 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~--~~l~~l~~~aDvv~l~~p~~~~t~----  210 (313)
                      +.|++|.|+|+|.+|.+.++.|+..|++|.++|+.....     .+....  ....+.++++|+|+.+-...+...    
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~   89 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA   89 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence            478999999999999999999999999999999654321     122221  123455678998888654333211    


Q ss_pred             ------hccCHHHHh-hc-------CC-CcEEEEcCCCCccCHHHHHHHHHh
Q 021361          211 ------HIVNRKVID-AL-------GP-SGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       211 ------~~i~~~~l~-~m-------k~-ga~~in~~rg~~vd~~al~~al~~  247 (313)
                            .++++-.|. .+       ++ ..+-|--+-|+.-..+-+...|+.
T Consensus        90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence                  123322221 11       12 234455557888888878888875

>PRK12861 malic enzyme; Reviewed

Probab=95.70  E-value=0.33  Score=50.59  Aligned_cols=178  Identities=10%  Similarity=0.105  Sum_probs=116.8

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC-
Q 021361           90 AVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC-  168 (313)
Q Consensus        90 gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-  168 (313)
                      .|++.|. +.++  +|=.+++-+++.+|-                   .|+.|...+|.|.|.|.-|-.+++.+...|. 
T Consensus       157 ~ipvf~D-D~qG--Ta~v~lA~llnal~~-------------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~  214 (764)
T PRK12861        157 KIPVFHD-DQHG--TAITVSAAFINGLKV-------------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGLP  214 (764)
T ss_pred             CCCeecc-ccch--HHHHHHHHHHHHHHH-------------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence            7999998 4444  666788888887763                   2567889999999999999999999999998 


Q ss_pred             --cEEEECCCCc-----cc--cc-----c--cccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          169 --PISYHSRSEK-----SD--AN-----Y--KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       169 --~V~~~~~~~~-----~~--~~-----~--~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                        +++.+|+..-     ..  ..     +  ....++.|+++.+|+++= +.    ..+.+.++.++.|.+..++.=.|.
T Consensus       215 ~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLsN  289 (764)
T PRK12861        215 VENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALAN  289 (764)
T ss_pred             hhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECCC
Confidence              6888886431     00  00     0  123589999999997654 32    257999999999999999999887


Q ss_pred             CCcc-CHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHHc
Q 021361          233 GAHI-DEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEE-----TSKAMADLVIENLVAHFS  304 (313)
Q Consensus       233 g~~v-d~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~-----~~~~~~~~~~~ni~~~~~  304 (313)
                      ...- ..+..++  ..|+.. .+.    ...   ..--+..|+++=|=++=..-.     -.+.|.-.+++-|-.+..
T Consensus       290 PtpE~~pe~a~~--~~g~ai-vaT----Grs---~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~  357 (764)
T PRK12861        290 PTPEIFPELAHA--TRDDVV-IAT----GRS---DYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE  357 (764)
T ss_pred             CCccCCHHHHHh--cCCCEE-EEe----CCc---CCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence            6641 2222222  334422 222    111   123456789999977632222     124455455555544443

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.70  E-value=0.016  Score=53.52  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS  179 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~  179 (313)
                      +.||++.|+|.|..|++++-.|...|+ +|++++|+.++
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~k  163 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSR  163 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence            558999999999999999999999998 58999998653

>PLN02602 lactate dehydrogenase

Probab=95.68  E-value=0.046  Score=51.94  Aligned_cols=86  Identities=19%  Similarity=0.335  Sum_probs=56.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------cccc--CCHHHHHhhCCeeEEecCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKYY--TNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~~--~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ++|+|||.|.+|..+|-.|...|.  ++..+|...+...+              ....  .+.+ .+++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECCCCC
Confidence            699999999999999999986665  68889986643211              1111  2344 489999999986432


Q ss_pred             h---Hhh-hccC---------HHHHhhcCCCcEEEEcC
Q 021361          207 E---ETH-HIVN---------RKVIDALGPSGILINIG  231 (313)
Q Consensus       207 ~---~t~-~~i~---------~~~l~~mk~ga~~in~~  231 (313)
                      .   .++ .++.         .+.+....|++++|+++
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            1   122 1221         12344456789999987

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.67  E-value=0.081  Score=51.66  Aligned_cols=107  Identities=17%  Similarity=0.232  Sum_probs=68.6

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---------cccccc--CCHHHHHhh-CCeeEEecCCC---
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---------ANYKYY--TNIIDLASN-CQILIVACSLT---  206 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~~~~~~--~~l~~l~~~-aDvv~l~~p~~---  206 (313)
                      ++||++.|+|.|.+|.++|+.|...|++|.++|+.....         .+....  ....+++.+ +|+|+......   
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~   82 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN   82 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence            679999999999999999999999999999999754221         122211  233445554 89888755222   


Q ss_pred             hHh-------hhccCHH-HHhhc-CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          207 EET-------HHIVNRK-VIDAL-GPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       207 ~~t-------~~~i~~~-~l~~m-k~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      +..       ..++.+. ++..+ +...+-|--+.|+..-.+-+...|+..
T Consensus        83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence            211       1233333 22333 333455666678888888888888753

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.66  E-value=0.0079  Score=49.58  Aligned_cols=91  Identities=18%  Similarity=0.345  Sum_probs=58.5

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCccccc---------------ccccCCHHHHHhhCCeeEEecCC--
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSDAN---------------YKYYTNIIDLASNCQILIVACSL--  205 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv~l~~p~--  205 (313)
                      ||+|||. |.+|..+|-.|...+.  ++..+|+......+               .....+..+.+++||+|+++.-.  
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~   81 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPR   81 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccccc
Confidence            7999999 9999999999986554  79999988543211               11123567778899999998743  


Q ss_pred             ChH-hh-hccC---------HHHHhhcCCCcEEEEcCCCCccCH
Q 021361          206 TEE-TH-HIVN---------RKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       206 ~~~-t~-~~i~---------~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      .+. ++ .++.         .+.+....|+++++.+  +.++|.
T Consensus        82 ~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivv--tNPvd~  123 (141)
T PF00056_consen   82 KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVV--TNPVDV  123 (141)
T ss_dssp             STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHH
T ss_pred             cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEe--CCcHHH
Confidence            221 11 1111         1233445578888888  444553

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.61  E-value=0.028  Score=44.06  Aligned_cols=81  Identities=22%  Similarity=0.293  Sum_probs=52.2

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCChHhhhcc
Q 021361          147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       147 vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      |-|+|+|.+|+.+++.|+..+.+|.+.++.++..     .+...    ..+.+.+    ++++|.++++.+....  ++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~--n~~   78 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE--NLL   78 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH--HHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH--HHH
Confidence            5699999999999999999777899999876432     12111    1233332    5689999998875433  333


Q ss_pred             CHHHHhhcCCCcEEEE
Q 021361          214 NRKVIDALGPSGILIN  229 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in  229 (313)
                      -...++.+-+...++-
T Consensus        79 ~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   79 IALLARELNPDIRIIA   94 (116)
T ss_dssp             HHHHHHHHTTTSEEEE
T ss_pred             HHHHHHHHCCCCeEEE
Confidence            3445555555555543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.60  E-value=0.032  Score=55.99  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=34.8

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.+|++.|+|.|.+|++++..|...|++|++++|+.+
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e  413 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE  413 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            57899999999999999999999999999999998754

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.59  E-value=0.042  Score=50.44  Aligned_cols=62  Identities=23%  Similarity=0.309  Sum_probs=42.8

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCcccccc-c-ccCCHH-HH-HhhCCeeEEecCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDANY-K-YYTNII-DL-ASNCQILIVACSL  205 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~-~-~~~~l~-~l-~~~aDvv~l~~p~  205 (313)
                      ++++.|+|.|..+++++-.|...|+. |++++|+.++.... . ...+.. ++ ...+|+|+.++|.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~  188 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPI  188 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCcc
Confidence            46899999999999999999999985 99999987543211 0 001111 11 1347777777774

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.58  E-value=0.013  Score=56.21  Aligned_cols=60  Identities=20%  Similarity=0.403  Sum_probs=43.0

Q ss_pred             EEEEcCChhHHHHHHHHHhcC-C-cEEEECCCCcccc---------ccc-------ccCCHHHHHhhCCeeEEecCCC
Q 021361          147 VGIVGLGRIGTAIAKRVEAFG-C-PISYHSRSEKSDA---------NYK-------YYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       147 vgiiG~G~iG~~~a~~l~~~g-~-~V~~~~~~~~~~~---------~~~-------~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      |+|+|.|.+|+.+++.|...+ . +|.+.+|+.++..         ...       ...+++++++++|+|+.|+|..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence            789999999999999998766 4 7999999876410         111       1134778899999999999753

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.53  E-value=0.023  Score=56.16  Aligned_cols=109  Identities=14%  Similarity=0.199  Sum_probs=69.1

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cccccc--CCHHHHHhhCCeeEEecC---CChHh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYY--TNIIDLASNCQILIVACS---LTEET  209 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~--~~l~~l~~~aDvv~l~~p---~~~~t  209 (313)
                      .+.+++|.|+|+|..|+++|+.|...|++|.++|+.....      .+....  ....+.+.++|+|+.+-.   .++..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~   91 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL   91 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence            5789999999999999999999999999999999754321      122221  122345668898887532   22322


Q ss_pred             h-------hccCHHHHhh-------c-CC-CcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          210 H-------HIVNRKVIDA-------L-GP-SGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       210 ~-------~~i~~~~l~~-------m-k~-ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                      .       .++.+-.+..       + ++ ..+-|--+-|+..-.+-+...|+...
T Consensus        92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            1       1233323321       1 12 24455555788888888888887643

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.51  E-value=0.041  Score=55.85  Aligned_cols=62  Identities=21%  Similarity=0.409  Sum_probs=43.9

Q ss_pred             cHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECC
Q 021361          101 TDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSR  175 (313)
Q Consensus       101 ~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~  175 (313)
                      ....||.++-|=|-++|             |.--+..--..|++.+|.|+|.|.+|..+|+.|.+.|.. +..+|.
T Consensus       308 P~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~  370 (664)
T TIGR01381       308 PKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN  370 (664)
T ss_pred             HHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence            45667776666555443             541111012578999999999999999999999999984 777663

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.48  E-value=0.039  Score=55.95  Aligned_cols=65  Identities=20%  Similarity=0.420  Sum_probs=49.0

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc--c--c---ccCC---HHHHHhhCCeeEEecC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN--Y--K---YYTN---IIDLASNCQILIVACS  204 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--~--~---~~~~---l~~l~~~aDvv~l~~p  204 (313)
                      ..+..|+|||||.|..|+.+++.++.+|++|.++|+.+.....  +  .   .+.+   +.++++++|+|.....
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            3578999999999999999999999999999999987653211  0  0   1233   5566788999876544

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=95.48  E-value=0.049  Score=51.41  Aligned_cols=92  Identities=11%  Similarity=0.105  Sum_probs=66.2

Q ss_pred             ccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .+.|++|+++|-+  ++.++++..+..+|++|.+..|..-..              .+  .....++++.++++|+|..-
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  232 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD  232 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999986  789999999999999998888754111              01  22357899999999999874


Q ss_pred             c------CCC--hH-----hhhccCHHHHhhc-CCCcEEEEcCC
Q 021361          203 C------SLT--EE-----THHIVNRKVIDAL-GPSGILINIGR  232 (313)
Q Consensus       203 ~------p~~--~~-----t~~~i~~~~l~~m-k~ga~~in~~r  232 (313)
                      .      ...  ++     ...-++.+.++.. |++++|..+.-
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP  276 (334)
T PRK12562        233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLP  276 (334)
T ss_pred             CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCC
Confidence            3      100  01     1234577888875 78888888753

>PRK13529 malate dehydrogenase; Provisional

Probab=95.44  E-value=0.95  Score=45.46  Aligned_cols=211  Identities=15%  Similarity=0.200  Sum_probs=135.6

Q ss_pred             cCCCceEEEEcCCCCCc-CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCccccccc
Q 021361           64 SLPTLEIVASYSVGLDK-IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKF  142 (313)
Q Consensus        64 ~~~~Lk~i~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l  142 (313)
                      .+|+. +|+.-=-+..+ +.+..-.+..|++.|..- .+  +|-.+++-+++..|-                   .|+.|
T Consensus       237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi-QG--TaaV~LAgll~A~r~-------------------~g~~l  293 (563)
T PRK13529        237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI-QG--TGAVTLAGLLAALKI-------------------TGEPL  293 (563)
T ss_pred             hCCCe-EEehhhcCCchHHHHHHHhccCCCeecccc-ch--HHHHHHHHHHHHHHH-------------------hCCCh
Confidence            35665 66665444443 344333455799999843 33  677788888888773                   24568


Q ss_pred             CCCEEEEEcCChhHHHHHHHHHh----cCC-------cEEEECCCCc----c-cc-c-----cc------------ccCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEA----FGC-------PISYHSRSEK----S-DA-N-----YK------------YYTN  188 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~----~g~-------~V~~~~~~~~----~-~~-~-----~~------------~~~~  188 (313)
                      ...+|.|+|.|..|-.+|+.+..    .|.       +++.+|+..-    . .. .     ++            ...+
T Consensus       294 ~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~  373 (563)
T PRK13529        294 SDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVIS  373 (563)
T ss_pred             hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCC
Confidence            89999999999999999999886    587       6888887531    0 00 0     00            1147


Q ss_pred             HHHHHhhC--CeeEEecCCChHhhhccCHHHHhhcCC---CcEEEEcCCCCccCHHHHHHHHH--hCCceEEEccCCCCC
Q 021361          189 IIDLASNC--QILIVACSLTEETHHIVNRKVIDALGP---SGILINIGRGAHIDEPELVSALL--EGRLAGAGLDVYENE  261 (313)
Q Consensus       189 l~~l~~~a--Dvv~l~~p~~~~t~~~i~~~~l~~mk~---ga~~in~~rg~~vd~~al~~al~--~g~~~ga~lDV~~~E  261 (313)
                      +.|+++..  |+++=+.    ..-+.+.++.++.|.+   ..++.=.|......|-.-.++.+  +|+...|     ..-
T Consensus       374 L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~A-----tGs  444 (563)
T PRK13529        374 LLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVA-----TGS  444 (563)
T ss_pred             HHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEE-----ECC
Confidence            89999987  8776533    2246899999999977   88999998877755544455554  4654433     122


Q ss_pred             CCCC-------cccCCCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHHcCC
Q 021361          262 PEVP-------EQMLGLNNVVLLPHVGSDTEE-----TSKAMADLVIENLVAHFSNK  306 (313)
Q Consensus       262 P~~~-------~~l~~~pnvi~TPHia~~t~~-----~~~~~~~~~~~ni~~~~~g~  306 (313)
                      |.++       ...-+..|+++=|=++-..-.     -.+.|...+++-|-.+..-+
T Consensus       445 pf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~  501 (563)
T PRK13529        445 PFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVPLA  501 (563)
T ss_pred             CCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCccc
Confidence            2221       124466789999977633222     12556666666665555443

>PRK07877 hypothetical protein; Provisional

Probab=95.44  E-value=0.075  Score=55.10  Aligned_cols=94  Identities=16%  Similarity=0.288  Sum_probs=62.7

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCcc------------ccc-----------------c--cc-
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKS------------DAN-----------------Y--KY-  185 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~------------~~~-----------------~--~~-  185 (313)
                      ..|++++|+|+|+| +|..+|..|...|.  ++..+|...-.            ..+                 .  .. 
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            46899999999999 99999999998884  67776643210            000                 0  00 


Q ss_pred             -----cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccC
Q 021361          186 -----YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID  237 (313)
Q Consensus       186 -----~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd  237 (313)
                           ..+++++++++|+|+-|+- +-+++.++++...++=+  .++.-.+-++.+|
T Consensus       182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~  235 (722)
T PRK07877        182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI--PVLMATSDRGLLD  235 (722)
T ss_pred             eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence                 1368888999998888774 66888888876555322  2333344334444

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.36  E-value=0.042  Score=53.07  Aligned_cols=37  Identities=16%  Similarity=0.299  Sum_probs=32.7

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~  176 (313)
                      ..|++.+|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            46899999999999999999999999998 47777754

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.35  E-value=0.034  Score=54.91  Aligned_cols=106  Identities=12%  Similarity=0.151  Sum_probs=68.0

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc--------cccc--cCCHHHHHhhCCeeEEecCCChH---
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA--------NYKY--YTNIIDLASNCQILIVACSLTEE---  208 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~~~~--~~~l~~l~~~aDvv~l~~p~~~~---  208 (313)
                      ++||+|+|+|+|.-|.+.|+.|...|++|.++|.......        +...  .....+.+.++|+|+..-...+.   
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            5689999999999999999999999999999995432110        1011  11123456789988875433222   


Q ss_pred             h-------hhccCHHH--Hhh-cC-----CCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          209 T-------HHIVNRKV--IDA-LG-----PSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       209 t-------~~~i~~~~--l~~-mk-----~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      .       ..++++-.  +.. ++     ...+-|--+.|+.-...-+...|+.
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~  139 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA  139 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            1       12344333  233 32     1345566667888888888888875

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=95.34  E-value=0.059  Score=41.21  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=44.3

Q ss_pred             CCEEEEEcCChhHHHHHHHH-HhcCCcE-EEECCCCccc----ccccccCCHHHHHhh--CCeeEEecCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRV-EAFGCPI-SYHSRSEKSD----ANYKYYTNIIDLASN--CQILIVACSL  205 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l-~~~g~~V-~~~~~~~~~~----~~~~~~~~l~~l~~~--aDvv~l~~p~  205 (313)
                      ..++.|+|.|+.|++++... ...|+++ .++|..++..    .+...+.+++++.+.  .|+-++++|.
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~   72 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPA   72 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-H
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCH
Confidence            35899999999999987544 4667764 4566655432    334455688888887  9999999984

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=95.31  E-value=0.13  Score=47.54  Aligned_cols=104  Identities=14%  Similarity=0.177  Sum_probs=71.4

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCc-EEEECCC--CcccccccccCCHHHHHhh--CCeeEEecCCChHhhhccCHHH
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCP-ISYHSRS--EKSDANYKYYTNIIDLASN--CQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~-V~~~~~~--~~~~~~~~~~~~l~~l~~~--aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      ..+|.|.|. |.+|..+.+.|..+|+. ++.++|.  .....+...+.+++++...  .|+.++++|. +.+...+.+ .
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l~e-~   85 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAILE-A   85 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHHHH-H
Confidence            347899998 77999999999999986 3456776  4555677778899999987  8999999994 333434332 2


Q ss_pred             HhhcC-CCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          218 IDALG-PSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk-~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+ .. +.++++.-+-+ +-+++.|.+..++..+.
T Consensus        86 ~~-~gvk~avI~s~Gf~-~~~~~~l~~~a~~~gir  118 (291)
T PRK05678         86 ID-AGIDLIVCITEGIP-VLDMLEVKAYLERKKTR  118 (291)
T ss_pred             HH-CCCCEEEEECCCCC-HHHHHHHHHHHHHcCCE
Confidence            22 22 23444444332 33344888888887765

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.31  E-value=0.073  Score=49.35  Aligned_cols=30  Identities=20%  Similarity=0.520  Sum_probs=26.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC-cEEEECC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC-PISYHSR  175 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~  175 (313)
                      +|.|+|.|.+|..+|+.|...|. ++..+|.
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~   31 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDS   31 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            58999999999999999999998 4776663

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=95.30  E-value=0.1  Score=48.80  Aligned_cols=62  Identities=10%  Similarity=0.210  Sum_probs=49.2

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc------------cc-ccccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD------------AN-YKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~~-~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .+.|++|++||- +++.++++..+..+|++|.+..|..-..            .+ .....++++.++++|+|..-
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence            478999999997 6899999999999999999888754210            01 22357899999999999883

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.27  E-value=0.052  Score=52.85  Aligned_cols=68  Identities=9%  Similarity=0.088  Sum_probs=53.5

Q ss_pred             ccccCCCEEEEEcC----------ChhHHHHHHHHHhcC-CcEEEECCCCcccc----cccccCCHHHHHhhCCeeEEec
Q 021361          139 GSKFSGKSVGIVGL----------GRIGTAIAKRVEAFG-CPISYHSRSEKSDA----NYKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       139 ~~~l~g~~vgiiG~----------G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~----~~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      +..++|++|+|+|+          .+-+..+++.|+..| .+|.+|||......    ......++++.++.||+|++++
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV  394 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence            45578999999998          457788999999996 99999999754321    1112468999999999999999


Q ss_pred             CCC
Q 021361          204 SLT  206 (313)
Q Consensus       204 p~~  206 (313)
                      +..
T Consensus       395 ~~~  397 (415)
T PRK11064        395 DHS  397 (415)
T ss_pred             CCH
Confidence            864

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.27  E-value=0.49  Score=45.64  Aligned_cols=179  Identities=17%  Similarity=0.198  Sum_probs=114.7

Q ss_pred             cCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcC
Q 021361           88 DKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFG  167 (313)
Q Consensus        88 ~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g  167 (313)
                      +..|+|.|..- ++  +|=.+++-+++.+|-                   .|+.|+..+|.+.|.|.-|-++++.++..|
T Consensus       165 ~~~IPvFhDDq-qG--Taiv~lA~llnalk~-------------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g  222 (432)
T COG0281         165 RMNIPVFHDDQ-QG--TAIVTLAALLNALKL-------------------TGKKLKDQKIVINGAGAAGIAIADLLVAAG  222 (432)
T ss_pred             cCCCCcccccc-cH--HHHHHHHHHHHHHHH-------------------hCCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence            45688888743 33  666778888887662                   367899999999999999999999999999


Q ss_pred             C---cEEEECCCCcc----cc----cccc---------cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEE
Q 021361          168 C---PISYHSRSEKS----DA----NYKY---------YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGIL  227 (313)
Q Consensus       168 ~---~V~~~~~~~~~----~~----~~~~---------~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~  227 (313)
                      +   +|+.+|+..--    ..    ..+.         ... ++.+..+|+++-+-     ..+.+.++..+.|.++.++
T Consensus       223 ~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiI  296 (432)
T COG0281         223 VKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPII  296 (432)
T ss_pred             CCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEE
Confidence            8   58999986421    10    0100         011 44677899766433     1288999999999999998


Q ss_pred             EEcCCCCc-cCHHHHHHHHHhC-CceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHH
Q 021361          228 INIGRGAH-IDEPELVSALLEG-RLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEET-----SKAMADLVIENLV  300 (313)
Q Consensus       228 in~~rg~~-vd~~al~~al~~g-~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~-----~~~~~~~~~~ni~  300 (313)
                      .=.+-... +..+++.++ ..| .+-+      ...|..   --|..|+++-|-|+-..-++     .+.|...+++-|-
T Consensus       297 falaNP~pEi~Pe~a~~~-~~~aaiva------TGrsd~---PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA  366 (432)
T COG0281         297 FALANPTPEITPEDAKEW-GDGAAIVA------TGRSDY---PNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIA  366 (432)
T ss_pred             eecCCCCccCCHHHHhhc-CCCCEEEE------eCCCCC---cccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHH
Confidence            88876553 222222222 222 2321      122211   12778999999887443332     2556666666666


Q ss_pred             HHHc
Q 021361          301 AHFS  304 (313)
Q Consensus       301 ~~~~  304 (313)
                      .+.+
T Consensus       367 ~~~~  370 (432)
T COG0281         367 DLAR  370 (432)
T ss_pred             hhcc
Confidence            5544

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.26  E-value=0.058  Score=47.43  Aligned_cols=38  Identities=32%  Similarity=0.511  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +++|+++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367999999998 67999999999999999999998764

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.26  E-value=0.8  Score=40.75  Aligned_cols=42  Identities=19%  Similarity=0.115  Sum_probs=36.6

Q ss_pred             ccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          137 ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       137 ~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +..-.++|++|.|||.|.++..=++.|..+|++|+++++...
T Consensus        18 pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~   59 (223)
T PRK05562         18 FISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS   59 (223)
T ss_pred             eeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            445577899999999999999988999999999999988654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.26  E-value=0.19  Score=41.12  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=28.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~  177 (313)
                      +|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 588888653

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=95.26  E-value=0.41  Score=43.26  Aligned_cols=86  Identities=14%  Similarity=0.198  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhcCCcEEEECCCCccc----------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCc
Q 021361          156 GTAIAKRVEAFGCPISYHSRSEKSD----------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSG  225 (313)
Q Consensus       156 G~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga  225 (313)
                      |..||-.+...|++|...+|+.+-.          .+++..++-.+..+.+.+.++-+|.-..|.++. ++.++.+++|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            6778889999999999999876532          345556677788999999999999988887664 56899999999


Q ss_pred             EEEEcCCCCccCHHHHHHHH
Q 021361          226 ILINIGRGAHIDEPELVSAL  245 (313)
Q Consensus       226 ~~in~~rg~~vd~~al~~al  245 (313)
                      +++|+-.-+.+   .|+..|
T Consensus       112 VicnTCT~sp~---vLy~~L  128 (340)
T COG4007         112 VICNTCTVSPV---VLYYSL  128 (340)
T ss_pred             EecccccCchh---HHHHHh
Confidence            99999775544   455555

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.25  E-value=0.061  Score=45.89  Aligned_cols=32  Identities=28%  Similarity=0.402  Sum_probs=28.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCc-EEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~  177 (313)
                      +|+|||+|.+|..+++.|...|.. +..+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999995 88887653

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.21  E-value=0.094  Score=49.26  Aligned_cols=85  Identities=18%  Similarity=0.317  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----cccccc-----CCHHHHHh---hCCeeEEecCCChH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKYY-----TNIIDLAS---NCQILIVACSLTEE  208 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~~-----~~l~~l~~---~aDvv~l~~p~~~~  208 (313)
                      .|++|.|+|.|.+|...++.++..|. +|++.++++++.     .++...     .++.++..   ..|+++-++.....
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~  248 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSS  248 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHH
Confidence            58899999999999999999999999 588888765432     222111     13334332   26888776643211


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCC
Q 021361          209 THHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                          + ...++.++++..++.+|.
T Consensus       249 ----~-~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        249 ----I-NTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             ----H-HHHHHHhhcCCEEEEEcc
Confidence                1 245677888888888875

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.21  E-value=0.063  Score=49.78  Aligned_cols=85  Identities=14%  Similarity=0.147  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccccccc--ccCCHHH-HHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDANYK--YYTNIID-LASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~--~~~~l~~-l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      +|+++.|+|.|.+|...++.++.+|++ |.+.++..+......  ...+.++ .-...|+|+-++....    .+ ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~----~~-~~~~  218 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPS----LI-DTLV  218 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHH----HH-HHHH
Confidence            477899999999999999999999998 556666543321111  0111111 1124677777665321    11 2456


Q ss_pred             hhcCCCcEEEEcCC
Q 021361          219 DALGPSGILINIGR  232 (313)
Q Consensus       219 ~~mk~ga~~in~~r  232 (313)
                      +.++++..++.+|-
T Consensus       219 ~~l~~~G~iv~~G~  232 (308)
T TIGR01202       219 RRLAKGGEIVLAGF  232 (308)
T ss_pred             HhhhcCcEEEEEee
Confidence            77888888887763

>PRK05086 malate dehydrogenase; Provisional

Probab=95.18  E-value=0.065  Score=50.14  Aligned_cols=89  Identities=13%  Similarity=0.237  Sum_probs=55.6

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHh---cCCcEEEECCCCccc---c---ccc--c------cCCHHHHHhhCCeeEEecCCC
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEA---FGCPISYHSRSEKSD---A---NYK--Y------YTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~---~g~~V~~~~~~~~~~---~---~~~--~------~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ++|+|||. |.+|..++..+..   .+.++..+|+.+...   .   ...  .      ..++.+.++++|+|++++-..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            48999999 9999999988743   445788888764321   0   001  0      235567889999999987642


Q ss_pred             hH---hh-hccC------HH---HHhhcCCCcEEEEcCCC
Q 021361          207 EE---TH-HIVN------RK---VIDALGPSGILINIGRG  233 (313)
Q Consensus       207 ~~---t~-~~i~------~~---~l~~mk~ga~~in~~rg  233 (313)
                      ..   ++ .++.      .+   .++...+.+++++++-.
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP  120 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP  120 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            21   11 1111      22   23334577899998543

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=95.17  E-value=0.02  Score=45.22  Aligned_cols=95  Identities=17%  Similarity=0.253  Sum_probs=59.1

Q ss_pred             cCChhHHHHHHHHHhc----CCcE-EEECCCC--ccc-----ccccccCCHHHHHh--hCCeeEEecCCChHhhhccCHH
Q 021361          151 GLGRIGTAIAKRVEAF----GCPI-SYHSRSE--KSD-----ANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       151 G~G~iG~~~a~~l~~~----g~~V-~~~~~~~--~~~-----~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      |+|.||+.+++.+...    +++| .+++++.  ...     .......++++++.  +.|+|+=|.+..+..     .-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence            8999999999999865    6776 4566661  111     12344678999998  899999986543222     23


Q ss_pred             HHhhcCCCcEEEEcCCCCcc---CHHHHHHHHHhCCc
Q 021361          217 VIDALGPSGILINIGRGAHI---DEPELVSALLEGRL  250 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg~~v---d~~al~~al~~g~~  250 (313)
                      ..+.|+.|.-+|-.+.+.+.   ..+.|.++.++++.
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~  112 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV  112 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence            45567888889998888887   33445555554443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=95.12  E-value=0.11  Score=49.41  Aligned_cols=62  Identities=10%  Similarity=0.148  Sum_probs=47.0

Q ss_pred             ccCCCEEEEEcCC--------hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhC
Q 021361          141 KFSGKSVGIVGLG--------RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNC  196 (313)
Q Consensus       141 ~l~g~~vgiiG~G--------~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~a  196 (313)
                      .|+|++|+|+|.|        ++.++++..+..+|++|.+..|..-..              .+  ...+.++++.++++
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            4789999999853        455788889999999999888764211              11  22457899999999


Q ss_pred             CeeEEe
Q 021361          197 QILIVA  202 (313)
Q Consensus       197 Dvv~l~  202 (313)
                      |+|..-
T Consensus       247 Dvvyt~  252 (357)
T TIGR03316       247 DIVYPK  252 (357)
T ss_pred             CEEEEC
Confidence            999875

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=95.12  E-value=0.16  Score=47.74  Aligned_cols=98  Identities=10%  Similarity=0.129  Sum_probs=62.0

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCC-------cEEEECCCCcc--ccc---------------ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGC-------PISYHSRSEKS--DAN---------------YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~---------------~~~~~~l~~l~~~aDvv  199 (313)
                      ++|+|||. |.+|..+|-.|...|.       ++..+|.....  ..+               .....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            58999999 9999999999886665       68888884332  111               01123456789999999


Q ss_pred             EEecCCCh---Hhhh-cc--CH-------HHHhhcC-CCcEEEEcCCCCccCHHHHHHH
Q 021361          200 IVACSLTE---ETHH-IV--NR-------KVIDALG-PSGILINIGRGAHIDEPELVSA  244 (313)
Q Consensus       200 ~l~~p~~~---~t~~-~i--~~-------~~l~~mk-~ga~~in~~rg~~vd~~al~~a  244 (313)
                      +++.-...   .++. ++  |.       ..+.... |++++|+++  .++|.-.-+-.
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~  139 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAM  139 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHH
Confidence            99875422   1211 11  11       1223334 588999986  66666654443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.11  E-value=0.037  Score=54.45  Aligned_cols=108  Identities=18%  Similarity=0.250  Sum_probs=70.0

Q ss_pred             cCCCEEEEEcCChhHHH-HHHHHHhcCCcEEEECCCCccc------cccccc-CCHHHHHhhCCeeEEecCCCh---Hhh
Q 021361          142 FSGKSVGIVGLGRIGTA-IAKRVEAFGCPISYHSRSEKSD------ANYKYY-TNIIDLASNCQILIVACSLTE---ETH  210 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~-~a~~l~~~g~~V~~~~~~~~~~------~~~~~~-~~l~~l~~~aDvv~l~~p~~~---~t~  210 (313)
                      .++++|.|+|+|..|.+ +|+.|+..|++|.++|......      .+.... ....+.+.++|+|+..--..+   ..+
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            56789999999999999 7999999999999999764321      122211 122344568998887543322   221


Q ss_pred             -------hccCHH-HHhhc-CC-CcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          211 -------HIVNRK-VIDAL-GP-SGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       211 -------~~i~~~-~l~~m-k~-ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                             .++++. ++..+ ++ -.+-|--+.|+.--..-+...|+...
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   234433 33333 33 34555556788888888888887654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.09  E-value=0.12  Score=47.01  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~  178 (313)
                      .|.+|.|+|.|.+|..+++.++.+|.+ |++.+++.+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~  156 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD  156 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            588999999999999999999999997 887776554

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.08  E-value=0.27  Score=43.57  Aligned_cols=36  Identities=28%  Similarity=0.471  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.+|.|.|.|.+|+.+++.++..|.+|.+.+++.+
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~  169 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDE  169 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence            578999999999999999999999999998887653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=95.07  E-value=0.13  Score=48.60  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=47.0

Q ss_pred             cccCCCEEEEEcC---ChhHHHHHHHHH-hcCCcEEEECCCCccc----------cc--ccccCCHHHHHhhCCeeEE
Q 021361          140 SKFSGKSVGIVGL---GRIGTAIAKRVE-AFGCPISYHSRSEKSD----------AN--YKYYTNIIDLASNCQILIV  201 (313)
Q Consensus       140 ~~l~g~~vgiiG~---G~iG~~~a~~l~-~~g~~V~~~~~~~~~~----------~~--~~~~~~l~~l~~~aDvv~l  201 (313)
                      ..+.|++|+++|=   +++..+++..+. .+|++|.+..|..-..          .+  .....++++.++++|+|..
T Consensus       155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt  232 (338)
T PRK08192        155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYL  232 (338)
T ss_pred             CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEE
Confidence            3588999999999   578888888766 4599998888754211          01  2335789999999999988

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.07  E-value=0.092  Score=46.50  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .+.|+++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            367899999996 8999999999999999998887754

>PRK04148 hypothetical protein; Provisional

Probab=95.03  E-value=0.047  Score=44.57  Aligned_cols=62  Identities=15%  Similarity=0.232  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----c-----ccccCCHHHHHhhCCeeEEecCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----N-----YKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~-----~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      +++++..||+| -|..+|+.|...|++|++.|.++....     .     ...+..--++-+.+|+|-..-|-
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp   87 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPP   87 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence            56899999999 999999999999999999998876321     1     11123344566677777666653

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.99  E-value=0.042  Score=55.53  Aligned_cols=83  Identities=19%  Similarity=0.230  Sum_probs=56.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~~  211 (313)
                      .++-|+|+|++|+.+++.|+..|.++++.|.+++..     .+...    ..+.+-+    ++++|.++++++.+.++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            568999999999999999999999999999876532     11111    1222222    4689999999987766655


Q ss_pred             ccCHHHHhhcCCCcEEEE
Q 021361          212 IVNRKVIDALGPSGILIN  229 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in  229 (313)
                      ++.. . ..+.++..+|-
T Consensus       498 iv~~-~-~~~~~~~~iia  513 (558)
T PRK10669        498 IVAS-A-REKRPDIEIIA  513 (558)
T ss_pred             HHHH-H-HHHCCCCeEEE
Confidence            5443 2 22345555554

>PRK06349 homoserine dehydrogenase; Provisional

Probab=94.97  E-value=0.11  Score=50.85  Aligned_cols=103  Identities=19%  Similarity=0.275  Sum_probs=62.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc----------CCcE-EEECCCCcccc-----cccccCCHHHHHh--hCCeeEEecCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF----------GCPI-SYHSRSEKSDA-----NYKYYTNIIDLAS--NCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~----------g~~V-~~~~~~~~~~~-----~~~~~~~l~~l~~--~aDvv~l~~p~~  206 (313)
                      -+|||+|+|.+|+.+++.+...          +.+| .+++++.....     ....+.++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            4799999999999999887542          3444 45676654322     1234578999996  479999887653


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGRGAHI-DEPELVSALLEGRLA  251 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~rg~~v-d~~al~~al~~g~~~  251 (313)
                      .....    -..+.|+.|.-+|..-.+... .-+.|.++.++.+..
T Consensus        84 ~~~~~----~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         84 EPARE----LILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             hHHHH----HHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            22111    122446666655543332222 236677777666553

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=94.97  E-value=0.049  Score=51.61  Aligned_cols=56  Identities=25%  Similarity=0.469  Sum_probs=42.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc--cc-----ccCC---HHHHHhhCCeeEE
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN--YK-----YYTN---IIDLASNCQILIV  201 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--~~-----~~~~---l~~l~~~aDvv~l  201 (313)
                      +|||||.|..|+.+++.++.+|++|+++|..+.....  +.     .+.+   +.++++.||+|..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence            5899999999999999999999999999987643211  10     1223   6667888898754

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.97  E-value=0.043  Score=54.05  Aligned_cols=104  Identities=11%  Similarity=0.116  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc------cc-ccCCHHHHHhhCCeeEEecCCChH---hh--
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN------YK-YYTNIIDLASNCQILIVACSLTEE---TH--  210 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~------~~-~~~~l~~l~~~aDvv~l~~p~~~~---t~--  210 (313)
                      .||+|+|+|+|.-|.+.++.|+. |++|.++|........      .. ......+.+.++|+|+..-...+.   ..  
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a   83 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA   83 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence            47899999999999999999995 9999999954322110      01 111123456789988775433222   11  


Q ss_pred             -----hccCHH-HH-hhcCC-CcEEEEcCCCCccCHHHHHHHHHh
Q 021361          211 -----HIVNRK-VI-DALGP-SGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       211 -----~~i~~~-~l-~~mk~-ga~~in~~rg~~vd~~al~~al~~  247 (313)
                           .++++- ++ ..++. ..+-|--+.|+.....-+...|+.
T Consensus        84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~  128 (454)
T PRK01368         84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS  128 (454)
T ss_pred             HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence                 233333 32 33333 244455557888888888888876

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=94.96  E-value=0.081  Score=56.89  Aligned_cols=64  Identities=19%  Similarity=0.221  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhc-CCc-------------EEEECCCCcccc-------c---ccc-cCCHHHH---Hh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAF-GCP-------------ISYHSRSEKSDA-------N---YKY-YTNIIDL---AS  194 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~-g~~-------------V~~~~~~~~~~~-------~---~~~-~~~l~~l---~~  194 (313)
                      +.|+|+|||.|.||+..|+.|... +.+             |.+.|++.+...       +   ... +.+.+++   ++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            477999999999999999999754 333             788887764321       1   111 3455555   46


Q ss_pred             hCCeeEEecCCC
Q 021361          195 NCQILIVACSLT  206 (313)
Q Consensus       195 ~aDvv~l~~p~~  206 (313)
                      ++|+|++++|..
T Consensus       648 ~~DaVIsalP~~  659 (1042)
T PLN02819        648 QVDVVISLLPAS  659 (1042)
T ss_pred             CCCEEEECCCch
Confidence            899999999974

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.95  E-value=0.14  Score=50.00  Aligned_cols=94  Identities=15%  Similarity=0.174  Sum_probs=62.4

Q ss_pred             ccccCCCEEEEEcC----------ChhHHHHHHHHHhcCCcEEEECCCCcccccccc--cCCHHH-HHhhCCeeEEecCC
Q 021361          139 GSKFSGKSVGIVGL----------GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKY--YTNIID-LASNCQILIVACSL  205 (313)
Q Consensus       139 ~~~l~g~~vgiiG~----------G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--~~~l~~-l~~~aDvv~l~~p~  205 (313)
                      ++.++|++|+|+|+          .+-+..+++.|...|.+|.+|||.-........  ...+++ .++.||+|++++..
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h  388 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH  388 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence            45688999999999          457889999999999999999997322111010  111222 36789999999976


Q ss_pred             ChHhhhccCHHHHh-hcCCCcEEEEcCCCCc
Q 021361          206 TEETHHIVNRKVID-ALGPSGILINIGRGAH  235 (313)
Q Consensus       206 ~~~t~~~i~~~~l~-~mk~ga~~in~~rg~~  235 (313)
                      .+- + -++.+.+. .|+...++++ +|+-+
T Consensus       389 ~~f-~-~~~~~~~~~~~~~~~~iiD-~r~~~  416 (425)
T PRK15182        389 QQF-K-QMGSEDIRGFGKDKHVLYD-LKYVL  416 (425)
T ss_pred             HHh-h-cCCHHHHHHhcCCCCEEEE-CCCCC
Confidence            432 2 24544443 4554568888 46654

>PRK06392 homoserine dehydrogenase; Provisional

Probab=94.94  E-value=0.11  Score=49.02  Aligned_cols=105  Identities=10%  Similarity=0.217  Sum_probs=63.3

Q ss_pred             EEEEEcCChhHHHHHHHHHh--------cCCcEE-EECCCCc--cccc--------------cc-c-cC--CHHHHH-hh
Q 021361          146 SVGIVGLGRIGTAIAKRVEA--------FGCPIS-YHSRSEK--SDAN--------------YK-Y-YT--NIIDLA-SN  195 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~--------~g~~V~-~~~~~~~--~~~~--------------~~-~-~~--~l~~l~-~~  195 (313)
                      +|+|+|+|++|+.+++.|..        ++.+|. +.|++..  ...+              .. . ..  ++++++ .+
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~   81 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK   81 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence            79999999999999999876        455654 4454431  0110              00 0 12  456654 36


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI-DEPELVSALLEGRLA  251 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v-d~~al~~al~~g~~~  251 (313)
                      +|+|+=++|...+-... -.-+.+.|+.|.-+|-...|.+. ..+.|.+..++++..
T Consensus        82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~  137 (326)
T PRK06392         82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI  137 (326)
T ss_pred             CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence            89999888753211111 12234557788888888777765 456666666665443

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=94.93  E-value=0.16  Score=50.67  Aligned_cols=91  Identities=13%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             ccCCCEEEEEcC---ChhHHHHHHHHHhcC-CcEEEECCCCccc----------cc--ccccCCHHHHHhhCCee--EE-
Q 021361          141 KFSGKSVGIVGL---GRIGTAIAKRVEAFG-CPISYHSRSEKSD----------AN--YKYYTNIIDLASNCQIL--IV-  201 (313)
Q Consensus       141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g-~~V~~~~~~~~~~----------~~--~~~~~~l~~l~~~aDvv--~l-  201 (313)
                      .+.|++|+++|=   |++.++++..+..+| ++|.+..|..-..          .+  .....++++.++++|+.  .. 
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~  250 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF  250 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence            478999999998   589999999999998 9998887754311          12  22357899999999952  22 


Q ss_pred             ------ecCCC--h---H--hhhccCHHHHhhcCCCcEEEEcC
Q 021361          202 ------ACSLT--E---E--THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       202 ------~~p~~--~---~--t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                            .....  +   .  -...++.+.++.+|++++|+-+.
T Consensus       251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence                  12111  0   1  12356889999999999999887

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=94.91  E-value=0.28  Score=40.16  Aligned_cols=93  Identities=17%  Similarity=0.241  Sum_probs=66.3

Q ss_pred             HHHHHHHhcCCcEEEECCCCcc---------cccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEE
Q 021361          158 AIAKRVEAFGCPISYHSRSEKS---------DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI  228 (313)
Q Consensus       158 ~~a~~l~~~g~~V~~~~~~~~~---------~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~i  228 (313)
                      ..+++|...|++|++=.-....         ..|+....+.++++++||+|+-.-|.        ..+.++.|++|.++|
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p--------~~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPP--------SEEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCC--------CHHHHhhcCCCcEEE
Confidence            5678888889999875543322         13445556777999999998876654        356788899999999


Q ss_pred             EcCCCCccCHHHHHHHHHhCCceEEEccCCCC
Q 021361          229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYEN  260 (313)
Q Consensus       229 n~~rg~~vd~~al~~al~~g~~~ga~lDV~~~  260 (313)
                      -.....  ....+++.|.+.++...++|-...
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            876555  588899999999999888887544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.88  E-value=0.072  Score=52.15  Aligned_cols=108  Identities=15%  Similarity=0.222  Sum_probs=69.5

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---------cccccc--CCHHHHHhhCCeeEEecCCChH--
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---------ANYKYY--TNIIDLASNCQILIVACSLTEE--  208 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~~~~~~--~~l~~l~~~aDvv~l~~p~~~~--  208 (313)
                      +.++++.|+|.|.+|.++|+.|...|++|.++|......         .+....  ...++.+.++|+|+..--..+.  
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p   82 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP   82 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence            568999999999999999999999999999998754321         122211  1123455789998886544432  


Q ss_pred             -hh-------hccC-HHHHhh-cC---CCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          209 -TH-------HIVN-RKVIDA-LG---PSGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       209 -t~-------~~i~-~~~l~~-mk---~ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                       .+       .++. .+.+.. ++   ...+-|--+.|+.--.+-+...|+...
T Consensus        83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence             21       1222 233333 32   234555555788888888888887633

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.85  E-value=0.049  Score=55.54  Aligned_cols=88  Identities=27%  Similarity=0.368  Sum_probs=60.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCChHhh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTEETH  210 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~  210 (313)
                      ..++-|+|+|++|+.+++.|...|.++++.|.+++..     .+...    .++.+-+    +.+||.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            3579999999999999999999999999999877532     12111    1222222    568999999998766555


Q ss_pred             hccCHHHHhhcCCCcEEEEcCCC
Q 021361          211 HIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      .++  ...+.+.|...++--+|.
T Consensus       480 ~i~--~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        480 KIV--ELCQQHFPHLHILARARG  500 (601)
T ss_pred             HHH--HHHHHHCCCCeEEEEeCC
Confidence            433  234455566666654443

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=94.84  E-value=0.13  Score=49.56  Aligned_cols=62  Identities=11%  Similarity=0.279  Sum_probs=48.2

Q ss_pred             ccCCCEEEEEcC-----C---hhHHHHHHHHHhcCCcEEEECCCCcc---c-----------cc--ccccCCHHHHHhhC
Q 021361          141 KFSGKSVGIVGL-----G---RIGTAIAKRVEAFGCPISYHSRSEKS---D-----------AN--YKYYTNIIDLASNC  196 (313)
Q Consensus       141 ~l~g~~vgiiG~-----G---~iG~~~a~~l~~~g~~V~~~~~~~~~---~-----------~~--~~~~~~l~~l~~~a  196 (313)
                      .+.|++|+|+|-     |   ++.++++..+..+|++|.+..|..-.   .           .+  +..+.++++.++++
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            478999999985     5   56799999999999999988876421   0           01  22357999999999


Q ss_pred             CeeEEe
Q 021361          197 QILIVA  202 (313)
Q Consensus       197 Dvv~l~  202 (313)
                      |+|..-
T Consensus       264 DvVYtd  269 (395)
T PRK07200        264 DIVYPK  269 (395)
T ss_pred             CEEEEc
Confidence            999875

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.76  E-value=0.081  Score=51.68  Aligned_cols=87  Identities=24%  Similarity=0.240  Sum_probs=57.3

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------ccccc----cCCHHHH----HhhCCeeEEecCCC
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------ANYKY----YTNIIDL----ASNCQILIVACSLT  206 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------~~~~~----~~~l~~l----~~~aDvv~l~~p~~  206 (313)
                      +..+++.|+|+|.+|+.+++.|...|.+|+++++.++..       .+...    ..+.+.+    +.++|.|+++++.+
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            456899999999999999999999999999998876531       11111    1223222    46899998888765


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEc
Q 021361          207 EETHHIVNRKVIDALGPSGILINI  230 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~  230 (313)
                      ..+  ++-......+.+..+++-+
T Consensus       309 ~~n--~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        309 EAN--ILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             HHH--HHHHHHHHHhCCCeEEEEE
Confidence            433  3333334445555555543

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.76  E-value=0.09  Score=48.88  Aligned_cols=84  Identities=19%  Similarity=0.375  Sum_probs=56.1

Q ss_pred             EEEEcCChhHHHHHHHHHhcC--CcEEEECCCCccccc----------c----cc--cCCHHHHHhhCCeeEEecCCChH
Q 021361          147 VGIVGLGRIGTAIAKRVEAFG--CPISYHSRSEKSDAN----------Y----KY--YTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       147 vgiiG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~----------~----~~--~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      |+|||.|.+|..+|-.+...|  .++..+|+..+...+          .    ..  ..+ .+.+++||+|+++......
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            589999999999999998888  479999987653211          0    11  123 4688999999998864221


Q ss_pred             ---hh--------hccC--HHHHhhcCCCcEEEEcC
Q 021361          209 ---TH--------HIVN--RKVIDALGPSGILINIG  231 (313)
Q Consensus       209 ---t~--------~~i~--~~~l~~mk~ga~~in~~  231 (313)
                         ++        .++.  ...+....|++++++++
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence               11        1111  12334455889999987

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.76  E-value=0.44  Score=44.46  Aligned_cols=136  Identities=18%  Similarity=0.259  Sum_probs=81.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc------------ccc----ccccCCHHHHHhhCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS------------DAN----YKYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~------------~~~----~~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      .+|.|+|.|.||.-++-+|...|..|..+.|....            ..+    ......-.+.+..+|+|++++-.. +
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence            37999999999999999999999778888776631            011    001123334556899999988643 3


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCc--ccCCCCcEEEcCCCCCCc
Q 021361          209 THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE--QMLGLNNVVLLPHVGSDT  284 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~--~l~~~pnvi~TPHia~~t  284 (313)
                      +...+ +.....+++.+.++-. .-++=.++.+.......++. .++..+...-..+.  .......+.+.+..++.+
T Consensus        80 ~~~al-~~l~~~~~~~t~vl~l-qNG~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~  154 (307)
T COG1893          80 LEEAL-PSLAPLLGPNTVVLFL-QNGLGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD  154 (307)
T ss_pred             HHHHH-HHhhhcCCCCcEEEEE-eCCCcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence            33333 3456667778766644 33444555555555555444 22332221111111  344467788888777555

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.74  E-value=0.093  Score=49.04  Aligned_cols=66  Identities=23%  Similarity=0.342  Sum_probs=48.5

Q ss_pred             CEEEEEcCChhH-HHHHHHHHhcC--Cc-EEEECCCCccc------ccc-cccCCHHHHHhh--CCeeEEecCCChHhh
Q 021361          145 KSVGIVGLGRIG-TAIAKRVEAFG--CP-ISYHSRSEKSD------ANY-KYYTNIIDLASN--CQILIVACSLTEETH  210 (313)
Q Consensus       145 ~~vgiiG~G~iG-~~~a~~l~~~g--~~-V~~~~~~~~~~------~~~-~~~~~l~~l~~~--aDvv~l~~p~~~~t~  210 (313)
                      .++||||+|.++ +..+..+...+  ++ +.++|++++..      .+. ..+.+++++++.  .|+|++++|..-+..
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e   82 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE   82 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence            489999999776 55888888776  35 45678887642      222 357899999986  599999999765533

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.73  E-value=0.13  Score=47.78  Aligned_cols=83  Identities=18%  Similarity=0.125  Sum_probs=53.8

Q ss_pred             CCEEEEEcCChhHHHHHHHHHh-cCCcE-EEECCCCccc-------ccccc-cCCHHHHHh-----hCCeeEEecCCChH
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEA-FGCPI-SYHSRSEKSD-------ANYKY-YTNIIDLAS-----NCQILIVACSLTEE  208 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~-~g~~V-~~~~~~~~~~-------~~~~~-~~~l~~l~~-----~aDvv~l~~p~~~~  208 (313)
                      ..++||||.|+||+..+..+.. -++++ .++++.+++.       .+... +.+.+++++     +.|+|+.++|...+
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            4589999999999997776664 35675 4566655421       23332 467899985     58889999975433


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcC
Q 021361          209 THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      .+  .   .....+.|..+|+-+
T Consensus        84 ~e--~---a~~a~eaGk~VID~s  101 (302)
T PRK08300         84 VR--H---AAKLREAGIRAIDLT  101 (302)
T ss_pred             HH--H---HHHHHHcCCeEEECC
Confidence            22  1   122345677777765

>PRK15076 alpha-galactosidase; Provisional

Probab=94.70  E-value=0.053  Score=53.05  Aligned_cols=109  Identities=11%  Similarity=0.094  Sum_probs=67.9

Q ss_pred             CEEEEEcCChhHHHHHH--HH---Hhc-CCcEEEECCCCcccc-------------c----ccccCCHHHHHhhCCeeEE
Q 021361          145 KSVGIVGLGRIGTAIAK--RV---EAF-GCPISYHSRSEKSDA-------------N----YKYYTNIIDLASNCQILIV  201 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~--~l---~~~-g~~V~~~~~~~~~~~-------------~----~~~~~~l~~l~~~aDvv~l  201 (313)
                      .+|+|||.|++|-..+-  .+   .++ |.+|..+|...+...             +    .....++.+.++.||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            48999999999844433  22   223 458999998764321             0    1224577899999999999


Q ss_pred             ecCCC--hHhh-----------------hc----------cC-------HHHHhhcCCCcEEEEcCCCCccCHHHHHHHH
Q 021361          202 ACSLT--EETH-----------------HI----------VN-------RKVIDALGPSGILINIGRGAHIDEPELVSAL  245 (313)
Q Consensus       202 ~~p~~--~~t~-----------------~~----------i~-------~~~l~~mk~ga~~in~~rg~~vd~~al~~al  245 (313)
                      +.-..  ..-+                 ..          -+       .+.++...|++++||++-.-=+-..++. .+
T Consensus        82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~  160 (431)
T PRK15076         82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY  160 (431)
T ss_pred             eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence            88653  1110                 01          00       1234446789999999876655555555 23


Q ss_pred             HhCCceEEE
Q 021361          246 LEGRLAGAG  254 (313)
Q Consensus       246 ~~g~~~ga~  254 (313)
                      ...++.|.+
T Consensus       161 ~~~rviG~c  169 (431)
T PRK15076        161 PGIKTVGLC  169 (431)
T ss_pred             CCCCEEEEC
Confidence            445666665

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=94.68  E-value=0.27  Score=44.50  Aligned_cols=121  Identities=20%  Similarity=0.220  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhc----CC-------cEEE
Q 021361          104 VADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAF----GC-------PISY  172 (313)
Q Consensus       104 vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~----g~-------~V~~  172 (313)
                      +|--+++-+++..|-                   .|+.|.+.+|.|+|.|..|-.+|+.+...    |.       +++.
T Consensus         4 TaaV~lAgll~Al~~-------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~l   64 (255)
T PF03949_consen    4 TAAVVLAGLLNALRV-------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWL   64 (255)
T ss_dssp             HHHHHHHHHHHHHHH-------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEE
T ss_pred             hHHHHHHHHHHHHHH-------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEE
Confidence            566677888887663                   24568899999999999999999999887    87       4888


Q ss_pred             ECCCCc----c-c-c-----------cccccCCHHHHHhhC--CeeEEecCCChHhhhccCHHHHhhcCC---CcEEEEc
Q 021361          173 HSRSEK----S-D-A-----------NYKYYTNIIDLASNC--QILIVACSLTEETHHIVNRKVIDALGP---SGILINI  230 (313)
Q Consensus       173 ~~~~~~----~-~-~-----------~~~~~~~l~~l~~~a--Dvv~l~~p~~~~t~~~i~~~~l~~mk~---ga~~in~  230 (313)
                      +|+..-    . . .           ......++.|+++.+  |+++=..    ...+.+.++.++.|.+   ..++.=.
T Consensus        65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~L  140 (255)
T PF03949_consen   65 VDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFPL  140 (255)
T ss_dssp             EETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE-
T ss_pred             EeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEEC
Confidence            887531    1 0 0           001124899999998  9877643    2567899999999987   8999999


Q ss_pred             CCCCccCHHHHHHHHHh
Q 021361          231 GRGAHIDEPELVSALLE  247 (313)
Q Consensus       231 ~rg~~vd~~al~~al~~  247 (313)
                      |.....-|-.-.++.+-
T Consensus       141 SNPt~~aE~~peda~~~  157 (255)
T PF03949_consen  141 SNPTPKAECTPEDAYEW  157 (255)
T ss_dssp             SSSCGGSSS-HHHHHHT
T ss_pred             CCCCCcccCCHHHHHhh
Confidence            88777444444444443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.56  E-value=0.12  Score=48.76  Aligned_cols=85  Identities=21%  Similarity=0.360  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCC---Cccc-----cccccc----CCHHH--HHhhCCeeEEecCCChH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS---EKSD-----ANYKYY----TNIID--LASNCQILIVACSLTEE  208 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~---~~~~-----~~~~~~----~~l~~--l~~~aDvv~l~~p~~~~  208 (313)
                      .|.+|.|+|.|.+|...++.++..|++|++.+++   +++.     .++...    .+..+  .....|+|+-++.... 
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP-  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence            5889999999999999999999999999998874   2211     121111    11111  1234688887765321 


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCC
Q 021361          209 THHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                         .+ .+.++.|+++..++.+|.
T Consensus       251 ---~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ---LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             ---HH-HHHHHHccCCcEEEEEec
Confidence               12 345677888888877764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.53  E-value=0.19  Score=47.28  Aligned_cols=94  Identities=11%  Similarity=0.143  Sum_probs=59.8

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCC-------cEEEECCCCcc--ccc---------------ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGC-------PISYHSRSEKS--DAN---------------YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~---------------~~~~~~l~~l~~~aDvv  199 (313)
                      .+|+|||. |.+|..+|-.|...|.       ++..+|.....  ..+               .....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999999987674       68888885421  111               01123556889999999


Q ss_pred             EEecCCCh---Hhhh-cc--CH-------HHHhhcCC-CcEEEEcCCCCccCHHH
Q 021361          200 IVACSLTE---ETHH-IV--NR-------KVIDALGP-SGILINIGRGAHIDEPE  240 (313)
Q Consensus       200 ~l~~p~~~---~t~~-~i--~~-------~~l~~mk~-ga~~in~~rg~~vd~~a  240 (313)
                      +++.-...   .++. ++  |.       ..+....| +++++.++  .++|.-.
T Consensus        84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  136 (323)
T TIGR01759        84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA  136 (323)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            99875421   1221 11  11       12233444 88999886  5555544

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.52  E-value=0.044  Score=44.49  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=29.2

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE  177 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~  177 (313)
                      .++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            5799999999999999999999999 588887643

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd00704 MDH Malate dehydrogenase

Probab=94.41  E-value=0.32  Score=45.71  Aligned_cols=97  Identities=13%  Similarity=0.184  Sum_probs=61.1

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCC-------cEEEECCCC--ccccc---------------ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGC-------PISYHSRSE--KSDAN---------------YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~--~~~~~---------------~~~~~~l~~l~~~aDvv  199 (313)
                      .+|+|+|. |.+|..+|..|...|.       ++..+|+..  +...+               .....+..+.+++||+|
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV   80 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA   80 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence            37999999 9999999999886553       388888875  32211               01114567899999999


Q ss_pred             EEecCCCh---Hhhh-cc--CH-------HHHhhc-CCCcEEEEcCCCCccCHHHHHH
Q 021361          200 IVACSLTE---ETHH-IV--NR-------KVIDAL-GPSGILINIGRGAHIDEPELVS  243 (313)
Q Consensus       200 ~l~~p~~~---~t~~-~i--~~-------~~l~~m-k~ga~~in~~rg~~vd~~al~~  243 (313)
                      ++..-...   .++. ++  |.       ..++.. +|++++|.++  .++|.-+.+-
T Consensus        81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~  136 (323)
T cd00704          81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIA  136 (323)
T ss_pred             EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHH
Confidence            98764321   1221 11  11       123334 5888888885  6666555433

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.40  E-value=0.074  Score=46.95  Aligned_cols=60  Identities=12%  Similarity=0.204  Sum_probs=47.0

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-------cccc-------ccCCHHHHHhhCCeeEEecCCC
Q 021361          147 VGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-------ANYK-------YYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       147 vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------~~~~-------~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      |.|+|. |.+|+.+++.|...+++|.+..|...+.       .+..       ...++.+.++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            678996 9999999999999999999988876431       1221       1246777899999999999953

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=94.39  E-value=0.24  Score=46.93  Aligned_cols=105  Identities=12%  Similarity=0.060  Sum_probs=67.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc--CCcE-EEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCC-h-Hhhhcc
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF--GCPI-SYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLT-E-ETHHIV  213 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~--g~~V-~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~-~-~t~~~i  213 (313)
                      .+|||||. .+|+.-++.++..  ++++ .++|+..++.      .+...+.++++++++.|++++++|.+ + ....-+
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~   82 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL   82 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence            68999999 6899999988875  4775 4678876542      23345789999999999999999752 2 222222


Q ss_pred             CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 021361          214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGA  253 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga  253 (313)
                      .   .+.|+.|.-++.=---..-+.++|+++.++.++...
T Consensus        83 a---~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        83 A---RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             H---HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            2   233455543332211124566678888877766633

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=94.39  E-value=0.36  Score=45.08  Aligned_cols=106  Identities=19%  Similarity=0.310  Sum_probs=63.5

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCc--EEEECCCC--cccc-------------c--ccc--cCCHHHHHhhCCeeEEe
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCP--ISYHSRSE--KSDA-------------N--YKY--YTNIIDLASNCQILIVA  202 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~--V~~~~~~~--~~~~-------------~--~~~--~~~l~~l~~~aDvv~l~  202 (313)
                      .+|+|+|. |.+|..++..|...|..  |..+|+..  +...             +  ...  ..+. +.+++||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            47999998 99999999999988864  88889844  2110             0  011  1244 459999999999


Q ss_pred             cCCChH---hh-hc-------cC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHH----HHhCCceEE
Q 021361          203 CSLTEE---TH-HI-------VN--RKVIDALGPSGILINIGRGAHIDEPELVSA----LLEGRLAGA  253 (313)
Q Consensus       203 ~p~~~~---t~-~~-------i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~a----l~~g~~~ga  253 (313)
                      ......   ++ .+       +.  ...+....+++++|+++  .++|.-..+-.    +...++.|.
T Consensus        80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~  145 (309)
T cd05294          80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGL  145 (309)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeec
Confidence            863221   11 11       11  11234445677888776  55554443222    334455555

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.38  E-value=0.087  Score=38.56  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=31.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD  180 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~  180 (313)
                      ++.|||.|.+|-.+|..|+.+|.+|+.+.+.+...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58999999999999999999999999998877644

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=94.09  E-value=0.23  Score=47.13  Aligned_cols=85  Identities=25%  Similarity=0.410  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cccccc---CC---HHHHHhhCCeeEEecCCChHhh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYY---TN---IIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~---~~---l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      .|++|.|.|.|.+|..+++.++.+|.+|++.+.+.++.      .++...   .+   +.++....|+++-++... .+ 
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~-~~-  260 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAV-HA-  260 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCH-HH-
Confidence            58899999999999999999999999987766554321      122111   11   222223467777665421 11 


Q ss_pred             hccCHHHHhhcCCCcEEEEcCC
Q 021361          211 HIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~r  232 (313)
                        + ...++.++++..++.+|.
T Consensus       261 --~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        261 --L-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             --H-HHHHHHhcCCcEEEEeCC
Confidence              1 235666788888877764

>PRK14851 hypothetical protein; Provisional

Probab=94.05  E-value=0.13  Score=53.23  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSR  175 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~  175 (313)
                      ..|++++|+|+|+|.+|..+++.|...|. ++..+|.
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~   75 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF   75 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence            46899999999999999999999999998 4666663

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.05  E-value=0.11  Score=53.33  Aligned_cols=84  Identities=20%  Similarity=0.249  Sum_probs=57.3

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCChHhh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTEETH  210 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~  210 (313)
                      .++|-|+|+|++|+.+++.|...|.++.+.|.+++..     .+...    .++.+-+    ++++|.++++++.++.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            4689999999999999999999999999999877532     22211    1233322    458999999997665555


Q ss_pred             hccCHHHHhhcCCCcEEEE
Q 021361          211 HIVNRKVIDALGPSGILIN  229 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in  229 (313)
                      .++  ...+.+.|+..++-
T Consensus       480 ~i~--~~ar~~~p~~~iia  496 (621)
T PRK03562        480 QLV--ELVKEHFPHLQIIA  496 (621)
T ss_pred             HHH--HHHHHhCCCCeEEE
Confidence            432  23444556655544

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=94.04  E-value=0.21  Score=46.22  Aligned_cols=88  Identities=17%  Similarity=0.225  Sum_probs=57.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------cc-------ccC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------YK-------YYT  187 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~~-------~~~  187 (313)
                      +|.|||.|.+|..+++.|...|. ++.++|...-.             ..+                 ..       ...
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            58999999999999999999998 47777743210             000                 00       011


Q ss_pred             CHHHHHhhCCeeEEecCCChHhhhccCHHHHhhc-----CCCcEEEEcCCCC
Q 021361          188 NIIDLASNCQILIVACSLTEETHHIVNRKVIDAL-----GPSGILINIGRGA  234 (313)
Q Consensus       188 ~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~m-----k~ga~~in~~rg~  234 (313)
                      ..++++++.|+|+.++- +.+++..+++......     +.+.-+|..|..+
T Consensus        81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G  131 (291)
T cd01488          81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG  131 (291)
T ss_pred             hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence            23578889999888764 5567777777555443     2335577776544

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.03  E-value=0.16  Score=47.60  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=50.7

Q ss_pred             CEEEEEc-CChhHHHHHHHHHhcCC-cEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh-c
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEAFGC-PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA-L  221 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~-m  221 (313)
                      .+|+||| .|-.|+.+.++|..... ++.....+.....     ...++.++++|++++++|.... .     +.... .
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~-----~~~~~~~~~~DvvFlalp~~~s-~-----~~~~~~~   71 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDA-----AARRELLNAADVAILCLPDDAA-R-----EAVALID   71 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcc-----cCchhhhcCCCEEEECCCHHHH-H-----HHHHHHH
Confidence            4799999 79999999999987653 5555443332211     2345667889999999985322 2     22222 2


Q ss_pred             CCCcEEEEcC
Q 021361          222 GPSGILINIG  231 (313)
Q Consensus       222 k~ga~~in~~  231 (313)
                      +.|..+||.|
T Consensus        72 ~~g~~VIDlS   81 (313)
T PRK11863         72 NPATRVIDAS   81 (313)
T ss_pred             hCCCEEEECC
Confidence            4688889888

>PRK05442 malate dehydrogenase; Provisional

Probab=93.99  E-value=0.46  Score=44.77  Aligned_cols=97  Identities=9%  Similarity=0.130  Sum_probs=59.8

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCC-------cEEEECCCCcc--ccc---------------ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGC-------PISYHSRSEKS--DAN---------------YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~---------------~~~~~~l~~l~~~aDvv  199 (313)
                      ++|+|||. |.+|..+|-.|...|.       ++..+|.....  ..+               .....+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999998875443       68888875421  111               11123556889999999


Q ss_pred             EEecCCCh---Hhhh-cc--C----HH---HHhh-cCCCcEEEEcCCCCccCHHHHHH
Q 021361          200 IVACSLTE---ETHH-IV--N----RK---VIDA-LGPSGILINIGRGAHIDEPELVS  243 (313)
Q Consensus       200 ~l~~p~~~---~t~~-~i--~----~~---~l~~-mk~ga~~in~~rg~~vd~~al~~  243 (313)
                      +++.-...   .++. ++  |    ++   .+.. .++.+++|.++  .++|.-..+-
T Consensus        85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~  140 (326)
T PRK05442         85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALIA  140 (326)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHH
Confidence            99775321   1221 11  1    11   2222 44688999987  5666555333

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.97  E-value=2.4  Score=42.83  Aligned_cols=188  Identities=19%  Similarity=0.196  Sum_probs=120.9

Q ss_pred             cCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHh--
Q 021361           88 DKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEA--  165 (313)
Q Consensus        88 ~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~--  165 (313)
                      +..|++.|..- .+  +|-.+++-+++..|-                   .++.|...+|.|+|.|..|-.+|+.+..  
T Consensus       287 r~~i~~FnDDi-QG--TaaV~lAgll~A~r~-------------------~g~~l~d~riv~~GAGsAgigia~ll~~~~  344 (581)
T PLN03129        287 RTTHLCFNDDI-QG--TAAVALAGLLAALRA-------------------TGGDLADQRILFAGAGEAGTGIAELIALAM  344 (581)
T ss_pred             ccCCCEecccc-ch--HHHHHHHHHHHHHHH-------------------hCCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence            45788888743 33  677788888887773                   2456889999999999999999999876  


Q ss_pred             ---cCC-------cEEEECCCCc----ccc---c--------ccccCCHHHHHhh--CCeeEEecCCChHhhhccCHHHH
Q 021361          166 ---FGC-------PISYHSRSEK----SDA---N--------YKYYTNIIDLASN--CQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       166 ---~g~-------~V~~~~~~~~----~~~---~--------~~~~~~l~~l~~~--aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                         .|.       +++.+|+..-    ...   .        .....++.|+++.  .|+++=..    ...+.+.++.+
T Consensus       345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi  420 (581)
T PLN03129        345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVL  420 (581)
T ss_pred             HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHH
Confidence               476       6888887541    100   0        1123589999998  89777533    22368999999


Q ss_pred             hhcC---CCcEEEEcCCCCccCHHHHHHHHH--hCCceEEEccCCCCCCCCC-------cccCCCCcEEEcCCCCCCcHH
Q 021361          219 DALG---PSGILINIGRGAHIDEPELVSALL--EGRLAGAGLDVYENEPEVP-------EQMLGLNNVVLLPHVGSDTEE  286 (313)
Q Consensus       219 ~~mk---~ga~~in~~rg~~vd~~al~~al~--~g~~~ga~lDV~~~EP~~~-------~~l~~~pnvi~TPHia~~t~~  286 (313)
                      +.|.   +..++.=.|.....-|-.-.++.+  +|+...|.     .-|.++       ...-+..|+++=|=++-..-.
T Consensus       421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~At-----GSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~  495 (581)
T PLN03129        421 EAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFAS-----GSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALL  495 (581)
T ss_pred             HHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEe-----CCCCCCeeeCCeeecCccccceeeccchhhHHHh
Confidence            9995   788988888765433333333333  46644331     122211       124466789999987633222


Q ss_pred             H-----HHHHHHHHHHHHHHHHcCC
Q 021361          287 T-----SKAMADLVIENLVAHFSNK  306 (313)
Q Consensus       287 ~-----~~~~~~~~~~ni~~~~~g~  306 (313)
                      +     .+.|...+++-|-.+..-+
T Consensus       496 ~~a~~Itd~m~~aAA~aLA~~v~~~  520 (581)
T PLN03129        496 SGAIRVTDDMLLAAAEALAAQVTEE  520 (581)
T ss_pred             cCCcCCCHHHHHHHHHHHHHhCCcc
Confidence            2     2556666666666555433

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=93.96  E-value=0.23  Score=48.30  Aligned_cols=103  Identities=14%  Similarity=0.207  Sum_probs=67.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----------cccccc--CCHHHHHhhCCeeEEecCCC---hHh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----------ANYKYY--TNIIDLASNCQILIVACSLT---EET  209 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----------~~~~~~--~~l~~l~~~aDvv~l~~p~~---~~t  209 (313)
                      ++.|||+|.+|.++|+.|+..|++|.++|......           .+....  .+ .+.+.++|+|+..-...   |..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            47899999999999999999999999999754311           122211  23 44567899887754332   221


Q ss_pred             h-------hccCH-HHH-hhcCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          210 H-------HIVNR-KVI-DALGPSGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       210 ~-------~~i~~-~~l-~~mk~ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                      .       .++.+ +++ ..++.-.+-|.-+.|+.--..-+...|+...
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            1       13333 233 3334345666666899888888888887644

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=93.96  E-value=0.31  Score=45.58  Aligned_cols=83  Identities=19%  Similarity=0.202  Sum_probs=54.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccc-------------cc-----------------cc------ccCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSD-------------AN-----------------YK------YYTN  188 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~-------------~~-----------------~~------~~~~  188 (313)
                      +|.|||+|.+|..+++.|...|.. +..+|...-..             .+                 ..      ...+
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            589999999999999999999984 77777543110             00                 00      0111


Q ss_pred             ---HHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          189 ---IIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       189 ---l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                         ..+.+++.|+|+.++ .+.+.+..+++....   .+.-+|+.+.
T Consensus        81 ~~~~~~f~~~~DvVv~a~-Dn~~ar~~in~~c~~---~~ip~I~~gt  123 (312)
T cd01489          81 PDFNVEFFKQFDLVFNAL-DNLAARRHVNKMCLA---ADVPLIESGT  123 (312)
T ss_pred             ccchHHHHhcCCEEEECC-CCHHHHHHHHHHHHH---CCCCEEEEec
Confidence               347788999888877 456667677765433   2345677654

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN00106 malate dehydrogenase

Probab=93.91  E-value=0.17  Score=47.54  Aligned_cols=92  Identities=14%  Similarity=0.256  Sum_probs=58.7

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCccc---c----c--cc-----ccCCHHHHHhhCCeeEEecCC
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSD---A----N--YK-----YYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~---~----~--~~-----~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      ..+||+|||. |.+|..+|..|...+.  ++..+|......   .    .  ..     ...++.+.+++||+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            3469999999 9999999999985554  688888765110   0    0  01     123457889999999997654


Q ss_pred             ChH---hhh-cc--C----H---HHHhhcCCCcEEEEcCCCC
Q 021361          206 TEE---THH-IV--N----R---KVIDALGPSGILINIGRGA  234 (313)
Q Consensus       206 ~~~---t~~-~i--~----~---~~l~~mk~ga~~in~~rg~  234 (313)
                      ...   ++. ++  |    .   +.+....|++++++++-.-
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            221   111 11  1    1   2333455789999985433

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=93.91  E-value=0.28  Score=45.26  Aligned_cols=64  Identities=22%  Similarity=0.225  Sum_probs=44.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHh-cCCcEE-EECCCCccc-------cccc-ccCCHHHHHh--hCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEA-FGCPIS-YHSRSEKSD-------ANYK-YYTNIIDLAS--NCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~-------~~~~-~~~~l~~l~~--~aDvv~l~~p~~~~  208 (313)
                      .+|||||.|.||+..+..+.. -++++. ++++.+++.       .+.. .+.+.+++++  +.|+|++++|...+
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H   77 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH   77 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH
Confidence            379999999999988766654 466764 567655431       2222 2457888886  57889999986544

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=93.90  E-value=0.16  Score=45.30  Aligned_cols=38  Identities=21%  Similarity=0.387  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.||++.|.|. |.||+.+++.|...|++|...+|+..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999996 89999999999999999999888754

>PRK08265 short chain dehydrogenase; Provisional

Probab=93.89  E-value=0.25  Score=44.42  Aligned_cols=38  Identities=24%  Similarity=0.321  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .++||++-|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999997 89999999999999999999988754

>PRK06523 short chain dehydrogenase; Provisional

Probab=93.83  E-value=0.4  Score=42.72  Aligned_cols=40  Identities=25%  Similarity=0.281  Sum_probs=35.0

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ...++||++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus         4 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          4 FLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             CcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            34688999999996 79999999999999999999888654

>PLN02214 cinnamoyl-CoA reductase

Probab=93.82  E-value=0.19  Score=47.33  Aligned_cols=64  Identities=20%  Similarity=0.263  Sum_probs=47.5

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc------------cccc-------ccCCHHHHHhhCCeeE
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD------------ANYK-------YYTNIIDLASNCQILI  200 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~~~~-------~~~~l~~l~~~aDvv~  200 (313)
                      .+++++|.|.|. |.||+.+++.|...|++|.+..|+.+..            ....       ...+++++++.+|+|+
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            367899999998 9999999999999999999888764321            0011       1134667788899887


Q ss_pred             EecC
Q 021361          201 VACS  204 (313)
Q Consensus       201 l~~p  204 (313)
                      -+..
T Consensus        87 h~A~   90 (342)
T PLN02214         87 HTAS   90 (342)
T ss_pred             EecC
Confidence            7664

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=93.81  E-value=0.36  Score=47.30  Aligned_cols=97  Identities=11%  Similarity=0.152  Sum_probs=62.0

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhc-------CC--cEEEECCCCccccc---------------ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAF-------GC--PISYHSRSEKSDAN---------------YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~-------g~--~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv  199 (313)
                      .+|+|||. |.+|..+|-.|...       |.  +++.+|+..+...+               .....+..+.+++||+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            58999999 99999999988765       44  68888887654311               11123456889999999


Q ss_pred             EEecCCCh---Hhh-hcc--C-------HHHHhh-cCCCcEEEEcCCCCccCHHHHHH
Q 021361          200 IVACSLTE---ETH-HIV--N-------RKVIDA-LGPSGILINIGRGAHIDEPELVS  243 (313)
Q Consensus       200 ~l~~p~~~---~t~-~~i--~-------~~~l~~-mk~ga~~in~~rg~~vd~~al~~  243 (313)
                      ++..-...   .++ .++  |       ...+.. ..+++++|.++  .++|.-..+-
T Consensus       181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~  236 (444)
T PLN00112        181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALIC  236 (444)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHH
Confidence            99775421   111 111  1       123344 46788998876  5555555443

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=93.79  E-value=5.1  Score=40.34  Aligned_cols=213  Identities=15%  Similarity=0.136  Sum_probs=132.1

Q ss_pred             hcCCCceEEEEcCCCCCc-CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccc
Q 021361           63 DSLPTLEIVASYSVGLDK-IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSK  141 (313)
Q Consensus        63 ~~~~~Lk~i~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~  141 (313)
                      ..+|+ -+|+.-=-+..+ +.+..-.+..|++.|..- .  .+|-.+++-+|+..|-                   .++.
T Consensus       238 ~~~P~-~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDi-Q--GTaaV~lAgll~Alr~-------------------~g~~  294 (559)
T PTZ00317        238 SRWPN-AVVQFEDFSNNHCFDLLERYQNKYRCFNDDI-Q--GTGAVIAAGFLNALKL-------------------SGVP  294 (559)
T ss_pred             HhCCC-eEEehhhcCCccHHHHHHHhccCCCEecccc-h--hHHHHHHHHHHHHHHH-------------------hCCC
Confidence            34677 366665444444 333333334589988743 3  3677788889988773                   2456


Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHh----cCC-------cEEEECCCCc----c---ccc-----c-----cc---cCCHH
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEA----FGC-------PISYHSRSEK----S---DAN-----Y-----KY---YTNII  190 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~----~g~-------~V~~~~~~~~----~---~~~-----~-----~~---~~~l~  190 (313)
                      |...+|.|+|.|..|-.+|+.+..    .|.       +++.+|+..-    .   ...     +     ..   ..++.
T Consensus       295 l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~  374 (559)
T PTZ00317        295 PEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLE  374 (559)
T ss_pred             hhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHH
Confidence            889999999999999999998873    687       6888886531    0   000     0     11   34899


Q ss_pred             HHHhhC--CeeEEecCCChHhhhccCHHHHhhcCC---CcEEEEcCCCCccCHHHHHHHHH--hCCceEEEccCCCCCCC
Q 021361          191 DLASNC--QILIVACSLTEETHHIVNRKVIDALGP---SGILINIGRGAHIDEPELVSALL--EGRLAGAGLDVYENEPE  263 (313)
Q Consensus       191 ~l~~~a--Dvv~l~~p~~~~t~~~i~~~~l~~mk~---ga~~in~~rg~~vd~~al~~al~--~g~~~ga~lDV~~~EP~  263 (313)
                      |+++..  |+++=+.    ...+.+.++.++.|.+   ..++.=.|.....-|-.-.++.+  +|+...|.  -..-+|.
T Consensus       375 e~v~~~KPtvLIG~S----~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~At--Gspf~pv  448 (559)
T PTZ00317        375 DVVRFVKPTALLGLS----GVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVAS--GSPFPPV  448 (559)
T ss_pred             HHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEE--CCCCCCc
Confidence            999988  8777533    2246889999999874   88999888776544444444443  56644331  1111221


Q ss_pred             C-Cc---ccCCCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHHc
Q 021361          264 V-PE---QMLGLNNVVLLPHVGSDTEE-----TSKAMADLVIENLVAHFS  304 (313)
Q Consensus       264 ~-~~---~l~~~pnvi~TPHia~~t~~-----~~~~~~~~~~~ni~~~~~  304 (313)
                      . +.   ..-+..|+++=|=++-..-.     -.+.|...+++-+-.+..
T Consensus       449 ~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~  498 (559)
T PTZ00317        449 TLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLVS  498 (559)
T ss_pred             ccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHHhhCC
Confidence            1 11   24466799999977632222     235566666666655554

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=93.79  E-value=0.19  Score=46.35  Aligned_cols=62  Identities=18%  Similarity=0.239  Sum_probs=45.1

Q ss_pred             CCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccc---------c----ccc-------ccCCHHHHHhhCCeeEE
Q 021361          143 SGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSD---------A----NYK-------YYTNIIDLASNCQILIV  201 (313)
Q Consensus       143 ~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~----~~~-------~~~~l~~l~~~aDvv~l  201 (313)
                      +|++|.|.| .|-||+.+++.|...|++|.+..|.....         .    ...       ....++++++.+|+|+.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            378999999 69999999999999999998877654321         0    001       11346677888998877


Q ss_pred             ecC
Q 021361          202 ACS  204 (313)
Q Consensus       202 ~~p  204 (313)
                      +..
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            654

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=93.71  E-value=0.57  Score=44.28  Aligned_cols=62  Identities=6%  Similarity=0.018  Sum_probs=46.2

Q ss_pred             c-CCCEEEEEcCC-------hhHHHHHHHHHhcCCcEEEECC-CCccc--------------cc--ccccCCHHHHHhhC
Q 021361          142 F-SGKSVGIVGLG-------RIGTAIAKRVEAFGCPISYHSR-SEKSD--------------AN--YKYYTNIIDLASNC  196 (313)
Q Consensus       142 l-~g~~vgiiG~G-------~iG~~~a~~l~~~g~~V~~~~~-~~~~~--------------~~--~~~~~~l~~l~~~a  196 (313)
                      + .|++|+|+|.|       ++.++++..+..+|++|.+..| ..-..              .+  .....++++.++++
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a  245 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA  245 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            5 68999776543       7888999999999999999888 32110              01  22357899999999


Q ss_pred             CeeEEec
Q 021361          197 QILIVAC  203 (313)
Q Consensus       197 Dvv~l~~  203 (313)
                      |+|..-.
T Consensus       246 Dvvy~~~  252 (335)
T PRK04523        246 DVVYAKS  252 (335)
T ss_pred             CEEEece
Confidence            9998743

>PTZ00325 malate dehydrogenase; Provisional

Probab=93.70  E-value=0.16  Score=47.73  Aligned_cols=64  Identities=13%  Similarity=0.187  Sum_probs=44.5

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcC--CcEEEECCCCccc---c------cccc--cC---CHHHHHhhCCeeEEecC
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFG--CPISYHSRSEKSD---A------NYKY--YT---NIIDLASNCQILIVACS  204 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g--~~V~~~~~~~~~~---~------~~~~--~~---~l~~l~~~aDvv~l~~p  204 (313)
                      ++.++|+|||. |.+|..+|..|...+  .++..+|+.....   .      ....  ..   +..+.++.||+|++++-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            56679999999 999999999998444  5788888732110   0      0111  11   12678999999998775


Q ss_pred             C
Q 021361          205 L  205 (313)
Q Consensus       205 ~  205 (313)
                      .
T Consensus        86 ~   86 (321)
T PTZ00325         86 V   86 (321)
T ss_pred             C
Confidence            4

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.70  E-value=0.11  Score=52.39  Aligned_cols=64  Identities=14%  Similarity=0.225  Sum_probs=47.2

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--------------c------ccc----c---CCHHHHH
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--------------N------YKY----Y---TNIIDLA  193 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~------~~~----~---~~l~~l~  193 (313)
                      -.|++|.|.|. |.||+.+++.|...|++|.++.|+.....              +      ...    .   .++.+.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            46889999997 89999999999999999998888654210              0      110    1   2345567


Q ss_pred             hhCCeeEEecCC
Q 021361          194 SNCQILIVACSL  205 (313)
Q Consensus       194 ~~aDvv~l~~p~  205 (313)
                      .++|+|+.++..
T Consensus       158 ggiDiVVn~AG~  169 (576)
T PLN03209        158 GNASVVICCIGA  169 (576)
T ss_pred             cCCCEEEEcccc
Confidence            889999888753

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.69  E-value=0.2  Score=44.25  Aligned_cols=38  Identities=32%  Similarity=0.513  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +++++++.|+|. |.+|+.+++.|...|++|++.+|+..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999996 88999999999999999999999764

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=93.67  E-value=0.38  Score=44.43  Aligned_cols=38  Identities=32%  Similarity=0.483  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSE  177 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~  177 (313)
                      +.|+..+|.|+|+|.+|..+|+.|...|.+ |..+|...
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            568999999999999999999999999985 88888654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK10206 putative oxidoreductase; Provisional

Probab=93.67  E-value=0.14  Score=48.47  Aligned_cols=63  Identities=11%  Similarity=0.254  Sum_probs=43.3

Q ss_pred             EEEEEcCChhHHH-HHHHHHh--cCCcEE-EECCCCccc-----c-cccccCCHHHHHh--hCCeeEEecCCChH
Q 021361          146 SVGIVGLGRIGTA-IAKRVEA--FGCPIS-YHSRSEKSD-----A-NYKYYTNIIDLAS--NCQILIVACSLTEE  208 (313)
Q Consensus       146 ~vgiiG~G~iG~~-~a~~l~~--~g~~V~-~~~~~~~~~-----~-~~~~~~~l~~l~~--~aDvv~l~~p~~~~  208 (313)
                      ++||||+|.+++. .+..+..  -++++. ++|+.++..     . ....+.+++++++  +.|+|++++|...+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H   77 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH   77 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence            7999999998754 3454432  357764 688865322     1 1334678999996  57999999997554

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=93.64  E-value=0.59  Score=43.20  Aligned_cols=104  Identities=13%  Similarity=0.149  Sum_probs=70.9

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcE-EEECCC--CcccccccccCCHHHHHhh--CCeeEEecCCChHhhhccCHHH
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPI-SYHSRS--EKSDANYKYYTNIIDLASN--CQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V-~~~~~~--~~~~~~~~~~~~l~~l~~~--aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      ..+|.|.|. |.+|..+-+.+...|.++ ..+++.  .....+...+.+++|+...  .|+.++++|. +.+...+.+ .
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l~e-~   83 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAIFE-A   83 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHHHH-H
Confidence            346888885 899999999999999883 446666  4445677778899999987  7999999994 333434332 2


Q ss_pred             HhhcC-CCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          218 IDALG-PSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk-~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+ .. +.++++.-+-++ -+++.|.+..++..+.
T Consensus        84 ~~-~Gvk~avIis~Gf~e-~~~~~l~~~a~~~gir  116 (286)
T TIGR01019        84 ID-AGIELIVCITEGIPV-HDMLKVKRYMEESGTR  116 (286)
T ss_pred             HH-CCCCEEEEECCCCCH-HHHHHHHHHHHHcCCE
Confidence            22 22 234444444333 3677888888887655

ATP citrate lyases appear to form an outgroup.

>CHL00194 ycf39 Ycf39; Provisional

Probab=93.64  E-value=0.13  Score=47.82  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=44.4

Q ss_pred             EEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccc-----cccc-------ccCCHHHHHhhCCeeEEecC
Q 021361          146 SVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYK-------YYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~-------~~~~l~~l~~~aDvv~l~~p  204 (313)
                      +|.|.| .|.+|+.+++.|...|++|.+.+|+....     .+.+       ...++.++++.+|+|+.+.+
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            689999 59999999999999999999998875321     1111       12346677899998887654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.63  E-value=0.11  Score=51.30  Aligned_cols=108  Identities=15%  Similarity=0.198  Sum_probs=68.4

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------cccccc--CCHHHHHhhCCeeEEecCCC
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------ANYKYY--TNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~~~--~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +..+.+++|.|||.|.+|.++|+.|+..|++|.++|+.....          .+....  .... ....+|+|+.+.-..
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGWR   89 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCcC
Confidence            345789999999999999999999999999999998654211          122111  1111 345689998876433


Q ss_pred             hHhh----------hccCH-HHH-hhcCC----CcEEEEcCCCCccCHHHHHHHHHh
Q 021361          207 EETH----------HIVNR-KVI-DALGP----SGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       207 ~~t~----------~~i~~-~~l-~~mk~----ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      +.+.          .++++ +++ ..+.+    ..+-|--+.|+.--..-+...|+.
T Consensus        90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            3221          13332 232 33422    235555557887777777778865

>PRK12937 short chain dehydrogenase; Provisional

Probab=93.63  E-value=0.34  Score=42.63  Aligned_cols=35  Identities=31%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCC
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      +.++++.|.|. |.||+.+|+.|...|++|+...++
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~   38 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG   38 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            57899999995 999999999999999998776554

>PRK08374 homoserine dehydrogenase; Provisional

Probab=93.54  E-value=0.59  Score=44.19  Aligned_cols=114  Identities=17%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHh--------cC--CcEEE-ECCCCcc--cccc----------------cc-------cCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEA--------FG--CPISY-HSRSEKS--DANY----------------KY-------YTN  188 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~--------~g--~~V~~-~~~~~~~--~~~~----------------~~-------~~~  188 (313)
                      -+|+|+|+|++|+.+++.|..        +|  .+|.+ .|++...  ..+.                .+       ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            489999999999999998876        66  44443 3433210  0010                00       116


Q ss_pred             HHHHH--hhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc-cCHHHHHHHHHhCCce-EEEccCCCCCCC
Q 021361          189 IIDLA--SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH-IDEPELVSALLEGRLA-GAGLDVYENEPE  263 (313)
Q Consensus       189 l~~l~--~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~-vd~~al~~al~~g~~~-ga~lDV~~~EP~  263 (313)
                      +++++  ..+|+|+-+.+.. ...    .-..+.++.|.-+|-...|.+ ...+.|.+..++.+.. .+.-.|.-.-|.
T Consensus        83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi  156 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI  156 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence            77887  4799999777432 212    122344566666665555533 3555666665554432 244556566664

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=93.53  E-value=0.21  Score=53.81  Aligned_cols=89  Identities=12%  Similarity=0.176  Sum_probs=62.1

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc--------------------------------cccc--c---
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK--------------------------------SDAN--Y---  183 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~--------------------------------~~~~--~---  183 (313)
                      .+.-.++.|+|.|++|+..++.+..+|++ . .++..-                                ...+  +   
T Consensus       200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~  277 (1042)
T PLN02819        200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA  277 (1042)
T ss_pred             CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence            34457899999999999999999988665 1 111000                                0000  0   


Q ss_pred             cc------c-CC-HHHHHhhCCeeEEecCCChHhhhccCHH-HHhhcCCCc----EEEEcC
Q 021361          184 KY------Y-TN-IIDLASNCQILIVACSLTEETHHIVNRK-VIDALGPSG----ILINIG  231 (313)
Q Consensus       184 ~~------~-~~-l~~l~~~aDvv~l~~p~~~~t~~~i~~~-~l~~mk~ga----~~in~~  231 (313)
                      .+      + .. +++.+..+|+++.++-..+..-.++.++ ..+.||+|.    +++|++
T Consensus       278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence            00      0 11 3567889999999997777777889888 777899998    889876

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.51  E-value=0.25  Score=47.70  Aligned_cols=64  Identities=20%  Similarity=0.207  Sum_probs=52.3

Q ss_pred             cCCCEEEEEcCC----------hhHHHHHHHHHhcCCcEEEECCCCcccc--cccccCCHHHHHhhCCeeEEecCC
Q 021361          142 FSGKSVGIVGLG----------RIGTAIAKRVEAFGCPISYHSRSEKSDA--NYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       142 l~g~~vgiiG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .+|++|+|+|+.          +-+..+++.|...|.+|.+|||......  +.....++.++++.||+|++..-.
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNRMA  369 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcCCc
Confidence            368999999994          4677899999999999999999754322  445678999999999999997743

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.49  E-value=0.13  Score=48.03  Aligned_cols=60  Identities=18%  Similarity=0.298  Sum_probs=43.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc----------------ccccCCHHHHHhhCCeeEEecCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN----------------YKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----------------~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      ||+|||.|.+|..+|-.|...|.  ++..+|...+...+                .....+-.+.+++||+|+++.-.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~   78 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP   78 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence            58999999999999998876665  68889986543211                01112335788999999997654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.49  E-value=0.36  Score=47.25  Aligned_cols=105  Identities=13%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---------cccccc--CCHHHHHhhCCeeEEecCCC---hHh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---------ANYKYY--TNIIDLASNCQILIVACSLT---EET  209 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~~~~~~--~~l~~l~~~aDvv~l~~p~~---~~t  209 (313)
                      +-+++|+|+|.+|.++|+.|...|++|.++|......         .+....  ..-.+.+.++|+|+.+-...   |..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~   85 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL   85 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence            4589999999999999999999999999999754321         022221  11234466899887754222   221


Q ss_pred             h-------hccCH-HHHhh-cCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          210 H-------HIVNR-KVIDA-LGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       210 ~-------~~i~~-~~l~~-mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      .       .++.+ +.+.. ++...+-|--+.|+.--.+-+...|+..
T Consensus        86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~  133 (448)
T PRK03803         86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA  133 (448)
T ss_pred             HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence            1       13332 33333 3433455555678888888888888753

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=93.49  E-value=0.2  Score=53.64  Aligned_cols=66  Identities=23%  Similarity=0.364  Sum_probs=53.8

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc--------------------------cccc--------ccC
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD--------------------------ANYK--------YYT  187 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------------------~~~~--------~~~  187 (313)
                      =.|++|+|||-|..|-+.|..|...|+.|.+|.|+...-                          .+..        ...
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence            369999999999999999999999999999999876420                          1111        136


Q ss_pred             CHHHHHhhCCeeEEecCCCh
Q 021361          188 NIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       188 ~l~~l~~~aDvv~l~~p~~~  207 (313)
                      +++++.++-|.|++++-.|.
T Consensus      1863 s~d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGSTT 1882 (2142)
T ss_pred             cHHHHhhccCeEEEEeCCCC
Confidence            89999999999999986553

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.48  E-value=0.33  Score=45.46  Aligned_cols=91  Identities=11%  Similarity=0.231  Sum_probs=58.1

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCccc------cc---cccc----C-CHHHHHhhCCeeEEecCCCh-
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSD------AN---YKYY----T-NIIDLASNCQILIVACSLTE-  207 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~------~~---~~~~----~-~l~~l~~~aDvv~l~~p~~~-  207 (313)
                      ||+|||. |.+|..+|-.|...+.  ++..+|......      ..   ....    . ++.+.++.||+|+++..... 
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            5899999 9999999999876664  688888765110      00   1111    1 24678999999999876421 


Q ss_pred             --Hhh-hcc--C-------HHHHhhcCCCcEEEEcCCCCccCH
Q 021361          208 --ETH-HIV--N-------RKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       208 --~t~-~~i--~-------~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                        .++ .++  |       .+.+..-.|++++|+++  .++|.
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs--NPvDv  121 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT--NPVNS  121 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec--Cchhh
Confidence              111 122  1       12334457899999984  55654

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=93.38  E-value=0.25  Score=46.24  Aligned_cols=85  Identities=16%  Similarity=0.191  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCH-HHHHhhCCeeEEecCCChHhhhccCHH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNI-IDLASNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l-~~l~~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      .|.+|.|.|.|.+|...++.++..|.+|++.+++.++.     .++....+. ++.-...|+++.+.... .   . -..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence            47899999999999999999999999998888776532     222211111 11112357666655432 1   2 234


Q ss_pred             HHhhcCCCcEEEEcCC
Q 021361          217 VIDALGPSGILINIGR  232 (313)
Q Consensus       217 ~l~~mk~ga~~in~~r  232 (313)
                      .++.++++..++.+|.
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            6778899998888774

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.35  E-value=0.38  Score=45.21  Aligned_cols=88  Identities=15%  Similarity=0.237  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHh-cC-CcEEEECCCCcccccc---cccCCHHHHHh--hCCeeEEecCCChHhhhccCH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEA-FG-CPISYHSRSEKSDANY---KYYTNIIDLAS--NCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~---~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      .|.+|.|+|.|.+|...++.++. +| .+|++.++++++....   ......+++..  ..|+|+-++... .+...++ 
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~~-  240 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAIN-  240 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHHH-
Confidence            47899999999999999999886 54 6798888876432111   11111222222  368888777531 0111122 


Q ss_pred             HHHhhcCCCcEEEEcCC
Q 021361          216 KVIDALGPSGILINIGR  232 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~r  232 (313)
                      ..++.++++..++.+|-
T Consensus       241 ~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         241 QIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             HHHHhCcCCcEEEEEee
Confidence            35677899888888763

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=93.34  E-value=0.58  Score=44.02  Aligned_cols=93  Identities=11%  Similarity=0.144  Sum_probs=57.8

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCC-------cEEEECCCCcc--ccc-------cc--------ccCCHHHHHhhCCeeE
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGC-------PISYHSRSEKS--DAN-------YK--------YYTNIIDLASNCQILI  200 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~-------~~--------~~~~l~~l~~~aDvv~  200 (313)
                      +|+|||. |.+|..+|..|...|.       ++..+|+....  ..+       ..        ...+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999987554       48888885432  111       00        0124468899999999


Q ss_pred             EecCCChH---hh-hccC---------HHHHhhc-CCCcEEEEcCCCCccCHHH
Q 021361          201 VACSLTEE---TH-HIVN---------RKVIDAL-GPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       201 l~~p~~~~---t~-~~i~---------~~~l~~m-k~ga~~in~~rg~~vd~~a  240 (313)
                      +..-....   ++ .++.         ...+... ++++++|.++  .++|.-.
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            87654211   11 1221         1223334 5788888876  5555544

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=93.27  E-value=0.19  Score=47.36  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=32.4

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      +++++|.|.|. |-||+.+++.|...|.+|+++++..
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            56799999995 9999999999999999999998754

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=93.14  E-value=0.5  Score=45.21  Aligned_cols=35  Identities=43%  Similarity=0.646  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .|.+|.|.|.|.+|..+++.++.+|.+|++.+++.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~  212 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS  212 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence            58899999999999999999999999988877654

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.13  E-value=0.46  Score=42.66  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCCC
Q 021361          141 KFSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       141 ~l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .++||++.|.|.+   .||+++|+.|...|++|+..+|+.
T Consensus         7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            4789999999986   799999999999999998887764

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.12  E-value=0.12  Score=45.59  Aligned_cols=37  Identities=19%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ++|+++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~   40 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE   40 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            67999999998 99999999999999999998888753

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=93.12  E-value=0.29  Score=45.33  Aligned_cols=62  Identities=24%  Similarity=0.260  Sum_probs=44.5

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc---------c----ccc-------ccCCHHHHHhhCCeeEE
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD---------A----NYK-------YYTNIIDLASNCQILIV  201 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~----~~~-------~~~~l~~l~~~aDvv~l  201 (313)
                      .||++.|.|. |.||+.+++.|...|++|.+..|+....         .    ...       ...+++++++++|+|+.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            3789999995 9999999999999999998776554311         0    011       12346677888998877


Q ss_pred             ecC
Q 021361          202 ACS  204 (313)
Q Consensus       202 ~~p  204 (313)
                      +..
T Consensus        84 ~A~   86 (325)
T PLN02989         84 TAS   86 (325)
T ss_pred             eCC
Confidence            764

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=93.11  E-value=0.2  Score=46.35  Aligned_cols=92  Identities=14%  Similarity=0.260  Sum_probs=66.9

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cc--------------cccc----------CCH
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----AN--------------YKYY----------TNI  189 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~--------------~~~~----------~~l  189 (313)
                      +-...+.++-++|+|.+|-..+...+..|+-|..++-.+...     .+              +-..          .-+
T Consensus       159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~  238 (356)
T COG3288         159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV  238 (356)
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence            445778889999999999999999999999998888654221     01              1100          114


Q ss_pred             HHHHhhCCeeEEec--CCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          190 IDLASNCQILIVAC--SLTEETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       190 ~~l~~~aDvv~l~~--p~~~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      .+.+++.|+|+...  |..+. -.++.++..+.||||+++||.+
T Consensus       239 a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         239 AEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence            45678899988753  33332 3378899999999999999974

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=93.09  E-value=0.22  Score=46.85  Aligned_cols=29  Identities=28%  Similarity=0.457  Sum_probs=23.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhcC----CcEEEEC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFG----CPISYHS  174 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g----~~V~~~~  174 (313)
                      +|||+|+|+||+.+.+.|...+    ++|...+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn   33 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN   33 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence            5899999999999999987653    6776554

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.09  E-value=0.21  Score=48.15  Aligned_cols=39  Identities=21%  Similarity=0.298  Sum_probs=34.6

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      ++...|++|.|+|. |.||+.+++.|...|++|.+++|..
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            45567899999997 9999999999999999999988865

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=93.02  E-value=0.23  Score=45.95  Aligned_cols=117  Identities=14%  Similarity=0.174  Sum_probs=72.8

Q ss_pred             HhhcC-CCceEEEEcCCCCCcCChhhhhcCCc-EEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCccc
Q 021361           61 LIDSL-PTLEIVASYSVGLDKIDLDKCKDKAV-RVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFEL  138 (313)
Q Consensus        61 ~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI-~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~  138 (313)
                      .++.+ ++.=+|=+...|+-++   ++..-++ +|.|+.+....-=. .++.=++...+.                   .
T Consensus        97 tl~ayg~D~iViRH~~egaa~~---~a~~~~~~pvINaGDG~~qHPT-Q~LLDl~TI~~~-------------------~  153 (316)
T COG0540          97 TLSAYGVDAIVIRHPEEGAARL---LAEFSGVNPVINAGDGSHQHPT-QALLDLYTIREE-------------------F  153 (316)
T ss_pred             HHHhhCCCEEEEeCccccHHHH---HHHhcCCCceEECCCCCCCCcc-HHHHHHHHHHHH-------------------h
Confidence            44444 5555555566666654   2222356 79997654332111 222222222221                   2


Q ss_pred             ccccCCCEEEEEc---CChhHHHHHHHHHhcCCcEEEECCCCccc----------cc-c-cccCCHHHHHhhCCeeEE
Q 021361          139 GSKFSGKSVGIVG---LGRIGTAIAKRVEAFGCPISYHSRSEKSD----------AN-Y-KYYTNIIDLASNCQILIV  201 (313)
Q Consensus       139 ~~~l~g~~vgiiG---~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~-~-~~~~~l~~l~~~aDvv~l  201 (313)
                      |+ +.|++|+|+|   +|+..++.++.|+.||.+|..+.|..-..          .+ . ......++.+.++|++.+
T Consensus       154 G~-~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~  230 (316)
T COG0540         154 GR-LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM  230 (316)
T ss_pred             CC-cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence            22 8899999999   89999999999999999999998864222          11 1 223455669999998865

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=93.00  E-value=0.28  Score=44.13  Aligned_cols=87  Identities=18%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCcccc-----c-ccccCC-HHHH--HhhCCeeEEecCCChHhhhc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDA-----N-YKYYTN-IIDL--ASNCQILIVACSLTEETHHI  212 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~-----~-~~~~~~-l~~l--~~~aDvv~l~~p~~~~t~~~  212 (313)
                      .|.++.|.|.|.+|..+++.++..|.+ |++.+++.++..     + ...... .+..  -...|+++.++....     
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~-----  171 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS-----  171 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH-----
Confidence            478999999999999999999999999 888877654321     1 110000 1111  124787777654322     


Q ss_pred             cCHHHHhhcCCCcEEEEcCCCC
Q 021361          213 VNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       213 i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      .-...++.+++++.++++|-.+
T Consensus       172 ~~~~~~~~l~~~g~~~~~g~~~  193 (277)
T cd08255         172 ALETALRLLRDRGRVVLVGWYG  193 (277)
T ss_pred             HHHHHHHHhcCCcEEEEEeccC
Confidence            1234677899999999987543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK08324 short chain dehydrogenase; Validated

Probab=92.96  E-value=0.22  Score=51.56  Aligned_cols=39  Identities=33%  Similarity=0.456  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +.+.||++.|.| .|.||+.+++.|...|++|+..+|+..
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            457899999999 599999999999999999999998764

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=92.94  E-value=0.24  Score=46.10  Aligned_cols=83  Identities=17%  Similarity=0.257  Sum_probs=54.0

Q ss_pred             EEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc---------------ccccCCHHHHHhhCCeeEEecCCCh---H
Q 021361          149 IVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN---------------YKYYTNIIDLASNCQILIVACSLTE---E  208 (313)
Q Consensus       149 iiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv~l~~p~~~---~  208 (313)
                      |||.|.+|..+|..|...+.  ++..+|...+...+               .....+-.+.+++||+|+++.-...   .
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~   80 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE   80 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence            69999999999999987665  68999986643211               1112244578899999999765421   1


Q ss_pred             hh--------hccC--HHHHhhcCCCcEEEEcC
Q 021361          209 TH--------HIVN--RKVIDALGPSGILINIG  231 (313)
Q Consensus       209 t~--------~~i~--~~~l~~mk~ga~~in~~  231 (313)
                      ++        .++.  .+.+....|.+++++++
T Consensus        81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  113 (299)
T TIGR01771        81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT  113 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            11        1111  12334457889999886

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=92.92  E-value=0.17  Score=47.31  Aligned_cols=64  Identities=14%  Similarity=0.220  Sum_probs=45.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc--CCcEEEECCCCcccccc---------------cccC-CHHHHHhhCCeeEEec--C
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF--GCPISYHSRSEKSDANY---------------KYYT-NIIDLASNCQILIVAC--S  204 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~---------------~~~~-~l~~l~~~aDvv~l~~--p  204 (313)
                      ++|+|||.|.+|+.+|-.|...  +-++..+|...+...+.               .... +-.+.++.||+|+++.  |
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p   80 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP   80 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence            4899999999999999999644  44788999885432220               0111 1256788999999988  5


Q ss_pred             CChH
Q 021361          205 LTEE  208 (313)
Q Consensus       205 ~~~~  208 (313)
                      ..|.
T Consensus        81 rKpG   84 (313)
T COG0039          81 RKPG   84 (313)
T ss_pred             CCCC
Confidence            5554

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.91  E-value=0.61  Score=43.40  Aligned_cols=85  Identities=21%  Similarity=0.315  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccc-----ccccc---c--CCHHH---HHh--hCCeeEEecCCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSD-----ANYKY---Y--TNIID---LAS--NCQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~-----~~~~~---~--~~l~~---l~~--~aDvv~l~~p~~  206 (313)
                      .|.+|.|+|.|.+|..+++.++.+|++ |++.+++.++.     .++..   .  .+.++   +..  ..|+++-+....
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~  242 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT  242 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence            488999999999999999999999999 98888765432     11111   0  11122   222  367777665421


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                       .   . ....+..+++++.++.+|.
T Consensus       243 -~---~-~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         243 -A---A-RRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             -H---H-HHHHHHHhhcCCEEEEEcC
Confidence             1   1 1234666788888777764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=92.84  E-value=0.25  Score=44.90  Aligned_cols=61  Identities=20%  Similarity=0.165  Sum_probs=44.8

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--cc-------cccCCHHHHH------hh-CCeeEEecCCC
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--NY-------KYYTNIIDLA------SN-CQILIVACSLT  206 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--~~-------~~~~~l~~l~------~~-aDvv~l~~p~~  206 (313)
                      +|.|+|. |.+|+.+++.|...|++|.+..|++++..  +.       ....++.+++      +. +|.|+++.|..
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~   78 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI   78 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence            3678887 99999999999999999999998875321  11       1123455666      45 89999888754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=92.83  E-value=0.99  Score=42.06  Aligned_cols=88  Identities=13%  Similarity=0.201  Sum_probs=56.6

Q ss_pred             cCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccc--------------ccc--ccCCHHHHHhhCCeeEEecC
Q 021361          142 FSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDA--------------NYK--YYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       142 l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~~~--~~~~l~~l~~~aDvv~l~~p  204 (313)
                      +.|++|+++|=+ ++.++++..+..+|++|.+..|..-...              +..  ...+. +.++++|+|..-.-
T Consensus       145 l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~w  223 (302)
T PRK14805        145 VSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDTW  223 (302)
T ss_pred             cCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeece
Confidence            789999999984 5678889999999999998887542211              111  23554 56899999987331


Q ss_pred             C---C----hHh-----hhccCHHHHhhcCCCcEEEEcC
Q 021361          205 L---T----EET-----HHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       205 ~---~----~~t-----~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      .   .    +..     ..-++++.++.+|++ +|..+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~l  261 (302)
T PRK14805        224 ISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHCQ  261 (302)
T ss_pred             EeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECCC
Confidence            0   0    111     134456666666654 555544

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.80  E-value=0.12  Score=44.99  Aligned_cols=37  Identities=30%  Similarity=0.436  Sum_probs=33.0

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~  176 (313)
                      +.|++.+|.|||+|.+|..+++.|...|.. +..+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            468999999999999999999999999985 7777754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.80  E-value=0.41  Score=45.46  Aligned_cols=85  Identities=16%  Similarity=0.192  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----cccccc-----CCHHHHHh-----hCCeeEEecCCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKYY-----TNIIDLAS-----NCQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~~-----~~l~~l~~-----~aDvv~l~~p~~  206 (313)
                      .|.+|.|.|.|.+|..+++.++..|+ +|++.++++++.     .++...     .+..+.+.     ..|+++-++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            47899999999999999999999999 588888766432     122110     11111111     368877766432


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ..     -...++.++++..++.+|-
T Consensus       271 ~~-----~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         271 PA-----LETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             HH-----HHHHHHHHhcCCEEEEEcc
Confidence            21     1234667888888888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02427 UDP-apiose/xylose synthase

Probab=92.77  E-value=0.26  Score=47.11  Aligned_cols=65  Identities=11%  Similarity=0.176  Sum_probs=46.8

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhc-CCcEEEECCCCccc-----c-------cccc-------cCCHHHHHhhCC
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAF-GCPISYHSRSEKSD-----A-------NYKY-------YTNIIDLASNCQ  197 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~-g~~V~~~~~~~~~~-----~-------~~~~-------~~~l~~l~~~aD  197 (313)
                      |+.+..++|.|.|. |-||+.+++.|... |++|.+++++....     .       ..+.       ..+++++++++|
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            56778889999995 99999999999987 58999998764321     0       1111       124566788899


Q ss_pred             eeEEec
Q 021361          198 ILIVAC  203 (313)
Q Consensus       198 vv~l~~  203 (313)
                      +|+-+.
T Consensus        89 ~ViHlA   94 (386)
T PLN02427         89 LTINLA   94 (386)
T ss_pred             EEEEcc
Confidence            876655

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.75  E-value=0.26  Score=47.08  Aligned_cols=61  Identities=18%  Similarity=0.251  Sum_probs=43.6

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-c----cccc----c---CCHHHHHhhCCeeEEec
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-A----NYKY----Y---TNIIDLASNCQILIVAC  203 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-~----~~~~----~---~~l~~l~~~aDvv~l~~  203 (313)
                      .+++|.|.|. |-||+.+++.|...|++|.+.+|..... .    ....    .   .++..+++++|+|+-+.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            5689999998 9999999999999999999998754211 0    0110    1   22344567899887665

>PRK06701 short chain dehydrogenase; Provisional

Probab=92.72  E-value=0.41  Score=43.95  Aligned_cols=38  Identities=32%  Similarity=0.307  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          140 SKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       140 ~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      ..+.||++.|.|. |.||..+++.|...|++|..++++.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4688999999995 7899999999999999998888764

>PRK09186 flagellin modification protein A; Provisional

Probab=92.69  E-value=0.26  Score=43.71  Aligned_cols=37  Identities=27%  Similarity=0.408  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ++||++.|.|. |.||+.+|+.|...|++|.+.+|+.+
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~   39 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKE   39 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChH
Confidence            57899999997 78999999999999999998887653

>PRK08264 short chain dehydrogenase; Validated

Probab=92.69  E-value=0.29  Score=42.94  Aligned_cols=39  Identities=28%  Similarity=0.382  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCC-cEEEECCCCcc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGC-PISYHSRSEKS  179 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~-~V~~~~~~~~~  179 (313)
                      ++.++++.|+|. |.+|+.+|+.|...|+ +|...+|+.+.
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~   43 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES   43 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence            367899999995 9999999999999999 99999887643

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=92.67  E-value=0.53  Score=44.02  Aligned_cols=90  Identities=11%  Similarity=0.257  Sum_probs=58.2

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCccc--------c-c-cccc-----CCHHHHHhhCCeeEEecCCCh
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSD--------A-N-YKYY-----TNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~--------~-~-~~~~-----~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      +|+|||. |.+|..+|-.|...|.  ++..+|.. ...        . . ....     .++.+.+++||+|+++.-...
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            7999999 9999999999987774  68888876 211        0 0 1111     123578999999999875422


Q ss_pred             ---Hhhh-cc--C-------HHHHhhcCCCcEEEEcCCCCccCH
Q 021361          208 ---ETHH-IV--N-------RKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       208 ---~t~~-~i--~-------~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                         .++. ++  |       .+.+....|++++|+++  .++|.
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvDv  122 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS--NPVNS  122 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc--Cchhh
Confidence               1221 22  1       12334456899999985  44554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05884 short chain dehydrogenase; Provisional

Probab=92.64  E-value=0.39  Score=42.16  Aligned_cols=33  Identities=18%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ++.|.|. |.||+.+++.|...|++|+..+|+.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~   35 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD   35 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5778876 89999999999999999999888754

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.61  E-value=0.41  Score=45.05  Aligned_cols=36  Identities=19%  Similarity=0.383  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.+|.|+|.|.+|..+++.++..|.+|++.+++++
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~  201 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE  201 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence            478999999999999999999999999988887654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=92.59  E-value=0.28  Score=43.17  Aligned_cols=39  Identities=26%  Similarity=0.323  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +.+.++++.|.| .|.+|+.+++.|...|++|++.+|+..
T Consensus         2 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~   41 (251)
T PRK12826          2 RDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD   41 (251)
T ss_pred             CCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346789999999 699999999999999999999988753

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=92.57  E-value=0.3  Score=48.71  Aligned_cols=137  Identities=18%  Similarity=0.221  Sum_probs=89.6

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +..+.|+..-|+|-.. +|..++..|+.....|..+-..         ..++.+.+.++|+|+.++--    .+++-.+ 
T Consensus       157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG~----PefVKgd-  222 (935)
T KOG4230|consen  157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIGQ----PEFVKGD-  222 (935)
T ss_pred             CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcCC----cceeecc-
Confidence            4468999999999887 5899999999988888876432         24799999999999998843    3445443 


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE  297 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~  297 (313)
                        .+|||+++|++|---+-|...     ++|.-  ..=||-.++-.   +.    --.+||-=||.-.=+..-+.+.+++
T Consensus       223 --WiKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Ak---ev----as~ITPVPGGVGPMTVAMLmqNtve  286 (935)
T KOG4230|consen  223 --WIKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAK---EV----ASFITPVPGGVGPMTVAMLMQNTVE  286 (935)
T ss_pred             --cccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhh---hh----hhccccCCCCcchHHHHHHHHHHHH
Confidence              468999999998654443221     22322  24466333321   00    1357887777655555445555555


Q ss_pred             HHHHHHcC
Q 021361          298 NLVAHFSN  305 (313)
Q Consensus       298 ni~~~~~g  305 (313)
                      .-.|++.+
T Consensus       287 aAKR~r~e  294 (935)
T KOG4230|consen  287 AAKRQREE  294 (935)
T ss_pred             HHHHHHHh
Confidence            55565554

>PRK06153 hypothetical protein; Provisional

Probab=92.51  E-value=0.12  Score=49.49  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS  176 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~  176 (313)
                      .|++++|+|||+|.+|..++..|.+.|. ++..+|..
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            6899999999999999999999999998 57777743

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.50  E-value=0.57  Score=43.69  Aligned_cols=85  Identities=26%  Similarity=0.418  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccc---cCC---HHHHHhhCCeeEEecCCChHhhh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKY---YTN---IIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~---~~~---l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      .|.++.|.|.|.+|+.+++.++.+|++|++.+++.+...     +...   ..+   ..+.-...|+++-+.+...    
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~----  244 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH----  244 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence            467999999999999999999999999988887654211     1110   001   1112234666666555321    


Q ss_pred             ccCHHHHhhcCCCcEEEEcCC
Q 021361          212 IVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~r  232 (313)
                       .....++.+++++.++++|.
T Consensus       245 -~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         245 -DLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             -hHHHHHHHhcCCCEEEEEec
Confidence             12334566666667776654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK05717 oxidoreductase; Validated

Probab=92.47  E-value=0.57  Score=41.72  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .+.||++.|.|. |.||+.+|+.|...|++|...+++.
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~   44 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR   44 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            578999999996 8999999999999999999888764

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=92.46  E-value=1.1  Score=41.54  Aligned_cols=90  Identities=13%  Similarity=0.253  Sum_probs=67.4

Q ss_pred             cCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEecC
Q 021361          142 FSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       142 l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      |+|+|+..+|=| +++.++......+||+|.+..|..-..              .+  .....++++.++.+|+|..=+.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence            899999999977 588999999999999998877754321              11  2345799999999999986544


Q ss_pred             CC--hHhh-----------hccCHHHHhhcCCCcEEEEcC
Q 021361          205 LT--EETH-----------HIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       205 ~~--~~t~-----------~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ..  .+.+           .-++.+.++..+++++|..|-
T Consensus       231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL  270 (310)
T COG0078         231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL  270 (310)
T ss_pred             ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence            21  1111           456788888888888888875

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.46  E-value=0.46  Score=42.45  Aligned_cols=36  Identities=22%  Similarity=0.434  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCC
Q 021361          141 KFSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       141 ~l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      .+.||++.|.|.+   .||+++|+.|...|++|+..+|+
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            3789999999986   89999999999999999888775

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=92.46  E-value=0.22  Score=48.36  Aligned_cols=64  Identities=22%  Similarity=0.384  Sum_probs=47.1

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--------ccc-------ccCCHHHHHhhCCeeEEecC
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--------NYK-------YYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~~~-------~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .++||++.|.|. |.||+++++.|...|++|.+.+|+.+...        ...       ...++.+.+.+.|+++.+..
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAG  254 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHG  254 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCC
Confidence            578999999998 89999999999999999998887653210        000       01234556778999987653

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=92.45  E-value=0.26  Score=44.27  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=30.9

Q ss_pred             ccCCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCC
Q 021361          141 KFSGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      ++.||++-|.|.   +.||+++|+.|...|++|+...++
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~   41 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP   41 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            468999999997   489999999999999998766543

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.41  E-value=0.57  Score=44.22  Aligned_cols=85  Identities=21%  Similarity=0.292  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccc-----ccccc-----cCCHHH----HHh--hCCeeEEecCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSD-----ANYKY-----YTNIID----LAS--NCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~-----~~~~~-----~~~l~~----l~~--~aDvv~l~~p~  205 (313)
                      .|.+|.|.|.|.+|...++.++..|.+ |++.+++.++.     .+...     ..+..+    +..  ..|+|+-++..
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~  255 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR  255 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            478999999999999999999999996 88887765432     11110     011111    221  36777765542


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                       +.+   + ...+..++++..+|.+|-
T Consensus       256 -~~~---~-~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       256 -PET---Y-KQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             -HHH---H-HHHHHHhccCCEEEEECC
Confidence             111   1 224566777887777764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK12367 short chain dehydrogenase; Provisional

Probab=92.39  E-value=0.25  Score=44.30  Aligned_cols=65  Identities=23%  Similarity=0.380  Sum_probs=46.8

Q ss_pred             cccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-----cc----c--c--ccCCHHHHHhhCCeeEEecC
Q 021361          140 SKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-----AN----Y--K--YYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       140 ~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~----~--~--~~~~l~~l~~~aDvv~l~~p  204 (313)
                      ..++||++.|.|. |.||+.+|+.|...|++|++.+|+....     ..    .  .  ...+.++.+.+.|+++.+..
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG   88 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG   88 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence            3578999999997 6799999999999999999888765111     00    0  0  01234456677999988774

>PRK06841 short chain dehydrogenase; Provisional

Probab=92.39  E-value=0.54  Score=41.73  Aligned_cols=38  Identities=37%  Similarity=0.460  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.||++.|.|. |.||..+|+.|...|++|+..+|+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~   50 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED   50 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999995 99999999999999999998888653

>PRK06196 oxidoreductase; Provisional

Probab=92.39  E-value=0.34  Score=44.95  Aligned_cols=38  Identities=18%  Similarity=0.322  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.||++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999998 78999999999999999999888754

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.36  E-value=0.21  Score=48.79  Aligned_cols=106  Identities=14%  Similarity=0.094  Sum_probs=65.5

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cccccc--CCHHHHHhhCCeeEEecCCChHhh---
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYY--TNIIDLASNCQILIVACSLTEETH---  210 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~--~~l~~l~~~aDvv~l~~p~~~~t~---  210 (313)
                      +.+++|.|+|+|..|.+.++.|+..|++|.++|......      .+....  ....+.++..|+|+..-...++..   
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   83 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALAHPSLS   83 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHH
Confidence            468899999999999999999999999999999654321      121111  112345667886665432222211   


Q ss_pred             -------hccCH-HHHhhc-CCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          211 -------HIVNR-KVIDAL-GPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       211 -------~~i~~-~~l~~m-k~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                             .++.+ +.+..+ +.-.+-|--+.|+.--.+-|...|+.
T Consensus        84 ~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         84 AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             HHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence                   12222 333333 32344455557888888888888875

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=92.35  E-value=0.28  Score=44.48  Aligned_cols=57  Identities=12%  Similarity=0.208  Sum_probs=42.3

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhC--CeeEEecCC
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNC--QILIVACSL  205 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~a--Dvv~l~~p~  205 (313)
                      +|.|+|. |.+|+.+++.|...|++|.+.+|...   ......++.++++.+  |+|+.+...
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCcc
Confidence            4788995 99999999999999999999988621   111223566677765  988876653

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK14852 hypothetical protein; Provisional

Probab=92.29  E-value=0.33  Score=51.70  Aligned_cols=160  Identities=12%  Similarity=0.084  Sum_probs=88.5

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-------------------cc--
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-------------------YK--  184 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-------------------~~--  184 (313)
                      ..|+.++|+|||+|.+|..+++.|...|. ++...|...-.             ..+                   ..  
T Consensus       328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~  407 (989)
T PRK14852        328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF  407 (989)
T ss_pred             HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence            36899999999999999999999999998 46666532210             000                   00  


Q ss_pred             ----ccCCHHHHHhhCCeeEEecCC-ChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361          185 ----YYTNIIDLASNCQILIVACSL-TEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE  259 (313)
Q Consensus       185 ----~~~~l~~l~~~aDvv~l~~p~-~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~  259 (313)
                          ...+.+++++++|+|+-++-. .-+.+..++...   .+.+.-+|..+-.+..-.-..  ....|.   ..-|.|+
T Consensus       408 ~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c---~~~~IP~I~ag~~G~~g~v~v--~~p~~~---~~~~~f~  479 (989)
T PRK14852        408 PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRA---LELGIPVITAGPLGYSCALLV--FMPGGM---NFDSYFG  479 (989)
T ss_pred             ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHH---HHcCCCEEEeeccccCeeEEE--EcCCCC---CHHHhCC
Confidence                014577888999999987743 112333333322   233444555443110000000  000000   0011222


Q ss_pred             CCC-----------------CCCc-ccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361          260 NEP-----------------EVPE-QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP  307 (313)
Q Consensus       260 ~EP-----------------~~~~-~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  307 (313)
                      -||                 .+-+ ..++..++-+.=+.+-++.-+..-....+.....+++-|+.
T Consensus       480 ~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~  545 (989)
T PRK14852        480 IDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRR  545 (989)
T ss_pred             CCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCC
Confidence            222                 1111 23345566555566666666777788889999999999883

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=92.28  E-value=0.29  Score=46.11  Aligned_cols=66  Identities=14%  Similarity=0.210  Sum_probs=47.0

Q ss_pred             ccccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcccc----------cccc-------cCCHHHHHhhCCeeE
Q 021361          139 GSKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------NYKY-------YTNIIDLASNCQILI  200 (313)
Q Consensus       139 ~~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------~~~~-------~~~l~~l~~~aDvv~  200 (313)
                      +++-++++|.|.| .|-||+.+++.|...|++|++.+|......          ....       ...+++++++.|+|+
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            5677899999999 599999999999999999988777543210          1111       123556677788776


Q ss_pred             EecC
Q 021361          201 VACS  204 (313)
Q Consensus       201 l~~p  204 (313)
                      -+..
T Consensus        85 h~A~   88 (353)
T PLN02896         85 HVAA   88 (353)
T ss_pred             ECCc
Confidence            6554

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=92.25  E-value=0.17  Score=45.23  Aligned_cols=120  Identities=18%  Similarity=0.273  Sum_probs=72.1

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------cc----
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------YK----  184 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~~----  184 (313)
                      ..|++++|.|+|+|.+|..+++.|...|. +++.+|...-.             ..+                 .+    
T Consensus         7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~   86 (231)
T cd00755           7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV   86 (231)
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            35889999999999999999999999998 57777753210             000                 00    


Q ss_pred             --c--cCCHHHHHh-hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCH-----------------HHHH
Q 021361          185 --Y--YTNIIDLAS-NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE-----------------PELV  242 (313)
Q Consensus       185 --~--~~~l~~l~~-~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~-----------------~al~  242 (313)
                        .  ..+.++++. +.|+|+.|+- +...+..+++...+ . .=.++...|-|+-.|.                 ..+.
T Consensus        87 ~~~i~~~~~~~l~~~~~D~VvdaiD-~~~~k~~L~~~c~~-~-~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R  163 (231)
T cd00755          87 EEFLTPDNSEDLLGGDPDFVVDAID-SIRAKVALIAYCRK-R-KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVR  163 (231)
T ss_pred             eeecCHhHHHHHhcCCCCEEEEcCC-CHHHHHHHHHHHHH-h-CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHH
Confidence              0  024556664 6899888774 33444444432222 1 1245555666655442                 3456


Q ss_pred             HHHHhCCceEEEcc-CCCCCCC
Q 021361          243 SALLEGRLAGAGLD-VYENEPE  263 (313)
Q Consensus       243 ~al~~g~~~ga~lD-V~~~EP~  263 (313)
                      +.|++.++.. .+. ||..|++
T Consensus       164 ~~Lrk~~~~~-~~~~v~S~E~~  184 (231)
T cd00755         164 KRLRKRGIFF-GVPVVYSTEPP  184 (231)
T ss_pred             HHHHHcCCCC-CeEEEeCCCCC
Confidence            6677776651 234 5777764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=92.24  E-value=0.38  Score=45.27  Aligned_cols=94  Identities=10%  Similarity=0.115  Sum_probs=58.7

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcC-------CcEEEECCCCcc--ccc----c-----------cccCCHHHHHhhCCee
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFG-------CPISYHSRSEKS--DAN----Y-----------KYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g-------~~V~~~~~~~~~--~~~----~-----------~~~~~l~~l~~~aDvv  199 (313)
                      .+|+|+|. |.+|..++..|...+       .+|..+|+....  ..+    .           ....++.+.++.||+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            37999999 999999999998744       478889885421  111    0           0124567889999999


Q ss_pred             EEecCCChH---hh-hcc--CH-------HHHhhc-CCCcEEEEcCCCCccCHHH
Q 021361          200 IVACSLTEE---TH-HIV--NR-------KVIDAL-GPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       200 ~l~~p~~~~---t~-~~i--~~-------~~l~~m-k~ga~~in~~rg~~vd~~a  240 (313)
                      +.+.-....   ++ .++  |.       ..+... ++++++|.++  .++|.-.
T Consensus        83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  135 (325)
T cd01336          83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA  135 (325)
T ss_pred             EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence            987654221   11 111  11       123334 5788888876  3444433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=92.22  E-value=0.63  Score=44.17  Aligned_cols=81  Identities=19%  Similarity=0.300  Sum_probs=50.5

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHh-cCCc---EEEE-CC-CCcccccc-----cc-cCCHHHHHhhCCeeEEecCCChHhh
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEA-FGCP---ISYH-SR-SEKSDANY-----KY-YTNIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~-~g~~---V~~~-~~-~~~~~~~~-----~~-~~~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      +.+|||||. |.+|+.+.+.|.. -.++   +..+ +. +..+....     .. ..+.++ ++++|++++++|.. .  
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~--   80 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-V--   80 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-H--
Confidence            468999998 9999999999984 6666   4333 32 22221111     11 123444 47899999999853 2  


Q ss_pred             hccCHHHHhh-cCCCcEEEEcC
Q 021361          211 HIVNRKVIDA-LGPSGILINIG  231 (313)
Q Consensus       211 ~~i~~~~l~~-mk~ga~~in~~  231 (313)
                         .+++... .+.|..+|+.|
T Consensus        81 ---s~~~~~~~~~~G~~VID~S   99 (347)
T PRK06728         81 ---SRQFVNQAVSSGAIVIDNT   99 (347)
T ss_pred             ---HHHHHHHHHHCCCEEEECc
Confidence               2222222 35688899887

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.21  E-value=0.43  Score=45.31  Aligned_cols=85  Identities=22%  Similarity=0.365  Sum_probs=57.9

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc------ccccc----C-C----HHHHH--hhCCeeEEecCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA------NYKYY----T-N----IIDLA--SNCQILIVACSL  205 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~------~~~~~----~-~----l~~l~--~~aDvv~l~~p~  205 (313)
                      +.++.|+|.|.||...++.++.+|. +|++.|+++++..      +....    . .    ..++-  ..+|+++-|+..
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~  248 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS  248 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence            3399999999999999999999997 5778888775421      11111    1 1    11222  248999998872


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                       +.   .+ ...++.++++..++.+|=.
T Consensus       249 -~~---~~-~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         249 -PP---AL-DQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             -HH---HH-HHHHHHhcCCCEEEEEecc
Confidence             22   11 3466778999988888854

>PRK06128 oxidoreductase; Provisional

Probab=92.21  E-value=0.25  Score=45.46  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=31.5

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCC
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      .++||++.|.|. |.||+.+|+.|...|++|.+..+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            588999999996 889999999999999998776554

>PRK06172 short chain dehydrogenase; Provisional

Probab=92.17  E-value=0.27  Score=43.62  Aligned_cols=38  Identities=29%  Similarity=0.336  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.||++.|.|. |.||+.+++.|...|++|+..+|+.+
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   42 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA   42 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            477999999996 78999999999999999999998754

>PRK07890 short chain dehydrogenase; Provisional

Probab=92.16  E-value=0.44  Score=42.31  Aligned_cols=37  Identities=24%  Similarity=0.454  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +.+|++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~   40 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE   40 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            57899999996 79999999999999999999988654

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.13  E-value=0.29  Score=45.09  Aligned_cols=60  Identities=15%  Similarity=0.258  Sum_probs=44.3

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc-----ccc-------ccCCHHHHHhhCCeeEEecC
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYK-------YYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~-------~~~~l~~l~~~aDvv~l~~p  204 (313)
                      ++|.|.|. |.+|+.+++.|...|++|.+.+|+.....     +..       ...++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            36889985 99999999999999999999988754321     111       11346677888998887664

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=92.09  E-value=0.24  Score=42.64  Aligned_cols=60  Identities=18%  Similarity=0.270  Sum_probs=43.8

Q ss_pred             EEEEEcCChhHHHHHHHH--HhcCCcE-EEECCCCccc----cc--ccccCCHHHHHh--hCCeeEEecCC
Q 021361          146 SVGIVGLGRIGTAIAKRV--EAFGCPI-SYHSRSEKSD----AN--YKYYTNIIDLAS--NCQILIVACSL  205 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l--~~~g~~V-~~~~~~~~~~----~~--~~~~~~l~~l~~--~aDvv~l~~p~  205 (313)
                      ++.|||.|++|++++..-  +..||++ .++|..++..    .+  ....++++..++  +.|+.++|+|.
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa  156 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA  156 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence            699999999999999753  4788986 5788776521    11  122356777777  68889999985

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=92.07  E-value=0.38  Score=45.27  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ++|++|.|.|. |.||+.+++.|...|++|++.+|...
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~   39 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP   39 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence            46899999996 89999999999999999999887654

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK06398 aldose dehydrogenase; Validated

Probab=92.07  E-value=0.6  Score=41.85  Aligned_cols=38  Identities=21%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +++||++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            478999999996 58999999999999999999888754

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.05  E-value=0.86  Score=44.55  Aligned_cols=106  Identities=14%  Similarity=0.196  Sum_probs=65.1

Q ss_pred             cCC-CEEEEEcCChhHHHHHHHHHhc--CCcEEEECCCCccc------cccccc-C-CHHHHHhhCCeeEEecCCChH--
Q 021361          142 FSG-KSVGIVGLGRIGTAIAKRVEAF--GCPISYHSRSEKSD------ANYKYY-T-NIIDLASNCQILIVACSLTEE--  208 (313)
Q Consensus       142 l~g-~~vgiiG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~------~~~~~~-~-~l~~l~~~aDvv~l~~p~~~~--  208 (313)
                      ++| ++|.|||+|..|.+.++.|...  |++|.++|......      .+.... . .-.+.+.++|+|+..-...+.  
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p   83 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP   83 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence            456 7899999999999999999877  58899999654221      122221 1 122345789988775433222  


Q ss_pred             -hh-------hccCH-HHHh-hcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          209 -TH-------HIVNR-KVID-ALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       209 -t~-------~~i~~-~~l~-~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                       .+       .++.+ +.+. .++...+-|--+-|+.--.+-+...|+.
T Consensus        84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  132 (438)
T PRK04663         84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA  132 (438)
T ss_pred             HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence             11       13322 3332 3343345555557888877777787775

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=91.99  E-value=0.36  Score=41.58  Aligned_cols=62  Identities=19%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccccc---c-------cccCCHHHHHhhCCeeEEecCCC
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDAN---Y-------KYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~---~-------~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      .+|+|||. |.+|+.+++-++..|++|+++-|++.+...   .       ...+++.+.+...|+|+.+....
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            47999996 899999999999999999999888765422   1       11245567888999999987543

>PLN02740 Alcohol dehydrogenase-like

Probab=91.98  E-value=0.65  Score=44.35  Aligned_cols=36  Identities=36%  Similarity=0.493  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~  178 (313)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.+++.+
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~  234 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE  234 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence            58899999999999999999999999 5888887654

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=91.95  E-value=0.57  Score=44.32  Aligned_cols=85  Identities=25%  Similarity=0.310  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccc---cCC---HHHHHhhCCeeEEecCCChHhh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKY---YTN---IIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~---~~~---l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      .|.++.|+|.|.+|..+++.++..|.+|++.+++.++.      .++..   ..+   +.++....|+++-+++....  
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~--  257 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP--  257 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence            57899999999999999999999999988777654321      12211   111   22222346887777653211  


Q ss_pred             hccCHHHHhhcCCCcEEEEcCC
Q 021361          211 HIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~r  232 (313)
                         -...++.++++..++.+|.
T Consensus       258 ---~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        258 ---LEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ---HHHHHHHhccCCEEEEECC
Confidence               1235677888888888874

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=91.90  E-value=0.36  Score=45.10  Aligned_cols=63  Identities=22%  Similarity=0.261  Sum_probs=44.5

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcC--CcEEEECCCCccc---------ccccc-------cCCHHHHHhhCCeeEEe
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFG--CPISYHSRSEKSD---------ANYKY-------YTNIIDLASNCQILIVA  202 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g--~~V~~~~~~~~~~---------~~~~~-------~~~l~~l~~~aDvv~l~  202 (313)
                      +.|++|.|.|. |.||+.+++.|...|  .+|.+++|.....         .....       ..++.+++++.|+|+.+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~   81 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA   81 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence            56899999996 899999999998876  6898888764321         01111       12456677889988765


Q ss_pred             cC
Q 021361          203 CS  204 (313)
Q Consensus       203 ~p  204 (313)
                      ..
T Consensus        82 Ag   83 (324)
T TIGR03589        82 AA   83 (324)
T ss_pred             cc
Confidence            43

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.86  E-value=0.29  Score=43.96  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          141 KFSGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .++||++.|.|.   +.||.++|+.|...|++|+..+|+.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~   43 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR   43 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence            378999999996   7999999999999999998887653

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=91.84  E-value=0.66  Score=45.73  Aligned_cols=67  Identities=18%  Similarity=0.277  Sum_probs=53.9

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc--------------------------cccc--------
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD--------------------------ANYK--------  184 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------------------~~~~--------  184 (313)
                      .....|++|+|||.|.-|-..|..|...|+.|++|.+....-                          .+.+        
T Consensus       118 ~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG  197 (457)
T COG0493         118 PGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG  197 (457)
T ss_pred             CCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence            345678999999999999999999999999999999876430                          1111        


Q ss_pred             ccCCHHHHHhhCCeeEEecCC
Q 021361          185 YYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       185 ~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      ...+++++.++.|.|++++..
T Consensus       198 ~~it~~~L~~e~Dav~l~~G~  218 (457)
T COG0493         198 RDITLEELLKEYDAVFLATGA  218 (457)
T ss_pred             CcCCHHHHHHhhCEEEEeccc
Confidence            125799999999999998764

>PRK08628 short chain dehydrogenase; Provisional

Probab=91.81  E-value=0.32  Score=43.29  Aligned_cols=38  Identities=29%  Similarity=0.335  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.|+++.|.| .|.||+.+|+.|...|++|.+.+|+..
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~   42 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP   42 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence            47899999999 478999999999999999988887654

>PRK07856 short chain dehydrogenase; Provisional

Probab=91.79  E-value=0.37  Score=42.89  Aligned_cols=38  Identities=26%  Similarity=0.382  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.||++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~   41 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAP   41 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChh
Confidence            367999999996 68999999999999999998888653

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.72  E-value=0.6  Score=42.20  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=31.7

Q ss_pred             cCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCC
Q 021361          142 FSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       142 l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      ++||++-|.|.|   .||+++|+.|...|++|+..+|+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999997   69999999999999999887775

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=91.68  E-value=0.34  Score=46.20  Aligned_cols=34  Identities=21%  Similarity=0.391  Sum_probs=31.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      +|+|||.|..|..+++.++.+|++|+++|+.+..
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~   34 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANA   34 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            5899999999999999999999999999987643

This enzyme is an alternative to PurN (TIGR00639)

>PRK06182 short chain dehydrogenase; Validated

Probab=91.64  E-value=0.85  Score=41.09  Aligned_cols=36  Identities=28%  Similarity=0.331  Sum_probs=32.0

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +++++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~   38 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD   38 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999995 89999999999999999999888754

>PRK12939 short chain dehydrogenase; Provisional

Probab=91.62  E-value=0.3  Score=43.05  Aligned_cols=38  Identities=18%  Similarity=0.407  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.|+++.|.|. |.||+.+|+.|...|++|.+.+|+.+
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~   42 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA   42 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            367899999996 89999999999999999988887654

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=91.56  E-value=0.63  Score=43.45  Aligned_cols=76  Identities=17%  Similarity=0.192  Sum_probs=49.4

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhc-CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCC
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAF-GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGP  223 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~  223 (313)
                      +|+|+|. |-.|..+.++|... .+++.........    . ..+.+++++++|++++++|... ...+. ...   .+.
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~----~-~~~~~~~~~~~D~vFlalp~~~-s~~~~-~~~---~~~   72 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK----D-AAERAKLLNAADVAILCLPDDA-AREAV-SLV---DNP   72 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc----C-cCCHhHhhcCCCEEEECCCHHH-HHHHH-HHH---HhC
Confidence            7999986 77899999999865 3465544322211    1 1246677789999999998542 22222 111   245


Q ss_pred             CcEEEEcC
Q 021361          224 SGILINIG  231 (313)
Q Consensus       224 ga~~in~~  231 (313)
                      |..+||.|
T Consensus        73 g~~VIDlS   80 (310)
T TIGR01851        73 NTCIIDAS   80 (310)
T ss_pred             CCEEEECC
Confidence            78888887

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK08862 short chain dehydrogenase; Provisional

Probab=91.47  E-value=0.28  Score=43.39  Aligned_cols=38  Identities=13%  Similarity=0.300  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +++||++.|.|.+. ||+++|+.|...|++|...+|+.+
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            36799999999876 999999999999999999888654

>PRK05866 short chain dehydrogenase; Provisional

Probab=91.32  E-value=0.32  Score=44.76  Aligned_cols=40  Identities=25%  Similarity=0.381  Sum_probs=35.7

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +..+.|+++.|.|. |.||+.+|+.|...|++|+..+|+.+
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~   75 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRED   75 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45788999999997 99999999999999999999988753

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=91.31  E-value=0.73  Score=45.06  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=28.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC------cEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC------PISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~------~V~~~~~~~  177 (313)
                      +|.|||.|.+|..+++.|...|.      ++.++|...
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~   38 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN   38 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence            48999999999999999999988      688888643

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=91.31  E-value=0.94  Score=43.81  Aligned_cols=83  Identities=7%  Similarity=0.043  Sum_probs=51.4

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---ccccc----cCCHHHH----HhhCCeeEEecCCChHhhhc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---ANYKY----YTNIIDL----ASNCQILIVACSLTEETHHI  212 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~~~  212 (313)
                      ..++-|+|+|.+|+.+++.|+..|.++.+.++.....   .+...    ..+.+.+    +++|+.|+++++.+.++...
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i  319 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV  319 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence            5689999999999999999999999988777542211   11111    1222222    45788888877765544432


Q ss_pred             cCHHHHhhcCCCcEEE
Q 021361          213 VNRKVIDALGPSGILI  228 (313)
Q Consensus       213 i~~~~l~~mk~ga~~i  228 (313)
                      +  ...+.+.|+..+|
T Consensus       320 v--L~ar~l~p~~kII  333 (393)
T PRK10537        320 V--LAAKEMSSDVKTV  333 (393)
T ss_pred             H--HHHHHhCCCCcEE
Confidence            2  2344555554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		1e-104
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		2e-41
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-30
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		3e-29
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		4e-25
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		5e-25
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		1e-24
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		4e-23
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		1e-21
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		5e-21
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		2e-20
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		2e-20
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		2e-15
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		2e-15
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		2e-15
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		4e-15
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		5e-15
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		3e-14
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		3e-14
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		2e-13
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		3e-13
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		3e-13
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		3e-13
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		5e-13
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		6e-13
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		2e-12
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		2e-12
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		4e-12
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		5e-12
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		5e-12
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		5e-12
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		7e-12
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		8e-12
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-11
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		2e-11
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		2e-11
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		3e-11
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		6e-11
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		8e-11
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		2e-10
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		3e-10
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		3e-08
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		3e-08
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		3e-08
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		4e-08
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		4e-08
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		6e-08
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		7e-07
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		7e-07
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		1e-06
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		1e-06
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		5e-06
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		9e-06
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		5e-05
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		1e-04

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  375 bits (962), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/313 (58%), Positives = 217/313 (69%)
Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           ME IGVLM  PMS YLEQEL  RF LF+ WTQ  +  F    + +IRAVVG++  GADAE
Sbjct: 21  MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 80
Query: 61  LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVC 120
           LID+LP LEIV+S+SVG             VRVTNTP                   RR+C
Sbjct: 81  LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140
Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
           E D++V+ G WK G F+L +KFSGK VGI+GLGRIG A+A+R EAF CPISY SRS+K +
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
            NY YY ++++LASN  IL+VAC LT ET HI+NR+VIDALGP G+LINIGRG H+DEPE
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260
Query: 241 LVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
           LVS            DV+E EPEVPE++ GL NVVLLPHVGS T ET K MADLV+ NL 
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 320
Query: 301 AHFSNKPLLTPVI 313
           AHFS KPLLTPV+
Sbjct: 321 AHFSGKPLLTPVV 333

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 147/305 (48%), Gaps = 2/305 (0%)
Query: 3   KIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELI 62
           K  +L+  P   ++  EL   +++ +L+ Q+      +    +IRAV      G   E  
Sbjct: 30  KPDLLLVEPXXPFVXDELQRNYSVHRLY-QAADRPALEAALPSIRAVATGGGAGLSNEWX 88
Query: 63  DSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEF 122
           + LP+L I+A   VG             + VT TP                   RRV + 
Sbjct: 89  EKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDG 148
Query: 123 DEFVKSGKWKNG-HFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA 181
           D  V+ G+W  G    LG    GK +G++GLG+IG A+A R EAFG  + Y +RS  S  
Sbjct: 149 DRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGV 208
Query: 182 NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPEL 241
           ++  + + +DLA +  +L V  + +  T +IV+  ++ ALGP GI++N+ RG  +DE  L
Sbjct: 209 DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDAL 268
Query: 242 VSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
           +             DV+ NEP +  +     N VL PH GS T ET  A   LV+ NL A
Sbjct: 269 IEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGKLVLANLAA 328
Query: 302 HFSNK 306
           HF+ +
Sbjct: 329 HFAGE 333

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 130/253 (51%), Gaps = 9/253 (3%)
Query: 58  DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
           D E+ ++ P L IVA+Y+VG             + VTNTP                   R
Sbjct: 58  DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117
Query: 118 RVCEFDEFVKSGKWK------NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
            V + D FV+SG+WK      +  + LG    GK++GI+GLGRIG AIAKR + F   I 
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL 177
Query: 172 YHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
           Y+SR+ K +   +    +  + DL      +++A  LT ET+H++N + +  +  + ILI
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI 237
Query: 229 NIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
           NI RG  +D   LV             DV+E EP   E++  L+NVVL PH+GS +    
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 289 KAMADLVIENLVA 301
           + MA+LV +NL+A
Sbjct: 298 EGMAELVAKNLIA 310

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 128/253 (50%), Gaps = 9/253 (3%)
Query: 58  DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
           D E+ ++ P L IVA+Y+VG             + VTNTP                   R
Sbjct: 58  DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117
Query: 118 RVCEFDEFVKSGKWK------NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
            V + D FV+SG+WK      +  + LG    GK++GI+GLGRIG AIAKR + F   I 
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRIL 177
Query: 172 YHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
           Y+SR+ K +   +    +  + DL      +++A  LT ET+H++N + +     + ILI
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 229 NIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
           NI RG  +D   LV             DV+E EP   E++  L+NVVL PH+GS +    
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 289 KAMADLVIENLVA 301
           +  A+LV +NL+A
Sbjct: 298 EGXAELVAKNLIA 310

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 113/249 (45%), Gaps = 6/249 (2%)
Query: 59  AELIDSL-PTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
           AE+I  L P L+ +A+ SVG             ++V +TP                   R
Sbjct: 85  AEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACR 144
Query: 118 RVCEFDEFVKSGKWKN-GHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR 175
           R  E D  V+SG W   G  +L G   +G+ +GI G GRIG AIA R   FG  I YH+R
Sbjct: 145 RGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNR 204
Query: 176 SEKSDA---NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
           +  S A      Y+  +  L     I ++A     E    ++   I  +    ++INI R
Sbjct: 205 TRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISR 264
Query: 233 GAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMA 292
           G  I++  L+             DV+ NEP +  +   L+N+ L PH+GS T ET  A  
Sbjct: 265 GDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAXG 324
Query: 293 DLVIENLVA 301
            L+I+ + A
Sbjct: 325 WLLIQGIEA 333

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 124/259 (47%), Gaps = 6/259 (2%)
Query: 58  DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
           DAE++D    L+++A YSVG             +RVT+TP                   R
Sbjct: 56  DAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGI--VGLGRIGTAIAKRVEAFGCPISYHSR 175
           RV E   + + G WK  H EL      + + +  VG+GRIG A+AKR  AFG  + YH+R
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR 175
Query: 176 SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
           + K    Y + + + +L     ++ +   LT ETH ++NR+ + A+    IL+N  RGA 
Sbjct: 176 TPKP-LPYPFLS-LEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGAL 233
Query: 236 IDEPELVSXXXXXXXXXXXXDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSKAMADL 294
           +D   LV             DV + EP  P   L  L N V+ PH+GS    T + MA++
Sbjct: 234 VDTEALVE-ALRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEV 292
Query: 295 VIENLVAHFSNKPLLTPVI 313
            +ENL+A    +    PV+
Sbjct: 293 AVENLLAVLEGREPPNPVV 311

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 117/259 (45%), Gaps = 8/259 (3%)
Query: 58  DAELIDSL-PTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXX 116
           D  ++D+    L+++++ SVG             +RV  TP                   
Sbjct: 66  DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 117 RRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYH 173
           RR+ E  E VK+G W +    +  G   +  +VGI+GLGRIG AIA+R++ FG     Y 
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 174 SRSEKSDANYKYYTNII---DLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
            R  + +   ++    +   +LA+    ++VACSLT  T  + N+     +  + + INI
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 231 GRGAHIDEPELVSXXXXXXXXXXXXDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSK 289
            RG  +++ +L              DV   EP      +L L N V+LPH+GS T  T  
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 290 AMADLVIENLVAHFSNKPL 308
            M+ L   NL+A    +P+
Sbjct: 306 TMSLLAANNLLAGLRGEPM 324

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 114/258 (44%), Gaps = 8/258 (3%)
Query: 58  DAELIDSL-PTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXX 116
           D  ++D+    L+++++ SVG             +RV  TP                   
Sbjct: 64  DKRILDAAGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 123
Query: 117 RRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYH 173
           RR+ E  E VK+G W +    +  G   +  +VGI+GLGRIG AIA+R++ FG     Y 
Sbjct: 124 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 183
Query: 174 SRSEKSDANYKYYTNII---DLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
            R  + +   ++    +   +LA+    ++VACSLT  T  + N+        + + INI
Sbjct: 184 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINI 243
Query: 231 GRGAHIDEPELVSXXXXXXXXXXXXDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSK 289
            RG  +++ +L              DV   EP      +L L N V+LPH+GS T  T  
Sbjct: 244 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 303
Query: 290 AMADLVIENLVAHFSNKP 307
             + L   NL+A    +P
Sbjct: 304 TXSLLAANNLLAGLRGEP 321

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 8/241 (3%)
Query: 60  ELIDSLP-TLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRR 118
           E+ID +P  ++ +++YS+G             ++V N P                   RR
Sbjct: 59  EVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARR 118
Query: 119 VCEFDEFVKSGKWKNGH-FEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---H 173
             E ++ +++  W      EL G K   K++GI G G IG A+AKR + F   I Y   H
Sbjct: 119 AGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH 178
Query: 174 SRSEKSDANYK--YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
             S   +A+Y+  ++ ++  L S  Q   +    T ET +  N+  I +L    I++N  
Sbjct: 179 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 238
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAM 291
           RG  +D   +V+            DV+  EP + E    L N  L PH+GS   +  + M
Sbjct: 239 RGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDM 298
Query: 292 A 292
           A
Sbjct: 299 A 299

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 12/251 (4%)
Query: 60  ELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRV 119
           E++++   L++++ +S G             + VT                      R++
Sbjct: 57  EVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKI 116
Query: 120 CEFDEFVKSGKWKNGHFELGSKFS------GKSVGIVGLGRIGTAIAKRVEAFGCPISYH 173
              D+F++ G+W++ H ++ + F       GK VGI+G+G IG AIA+R+  FG  + Y 
Sbjct: 117 HYADKFIRRGEWES-HAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYW 175
Query: 174 SRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
           SR  K +   +    Y +I +L     I+I+A  LT +T+HI+N + +  L     L+NI
Sbjct: 176 SRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKL-EGKYLVNI 234
Query: 231 GRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLN-NVVLLPHVGSDTEETSK 289
           GRGA +DE  +              DV+E EP    ++       VL PH      E  +
Sbjct: 235 GRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQE 294
Query: 290 AMADLVIENLV 300
            +    +ENL+
Sbjct: 295 DVGFRAVENLL 305

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 6/234 (2%)
Query: 58  DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
           DAE++ + P L+IVA   VG             V V N P                   R
Sbjct: 56  DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 115
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYH 173
           ++   D  ++   WK   F  G++  GK+VG+VGLGRIG  +A+R+ AFG  +     Y 
Sbjct: 116 QIPAADASLREHTWKRSSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV 174
Query: 174 SRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
           S +  +    +  + + DL +    + V    T ET  +++++ +    P  I++N  RG
Sbjct: 175 SPARAAQLGIELLS-LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARG 233
Query: 234 AHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEET 287
             +DE  L              DV+  EP     +  L  VV+ PH+G+ T E 
Sbjct: 234 GLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 287

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 6/234 (2%)
Query: 58  DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
           DAE++ + P L+IVA   VG             V V N P                   R
Sbjct: 57  DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 116
Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYH 173
           ++   D  ++   WK   F  G++  GK+VG+VGLGRIG  +A+R+ AFG  +     Y 
Sbjct: 117 QIPAADASLREHTWKRSSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV 175
Query: 174 SRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
           S +  +    +  + + DL +    + V    T ET  +++++ +    P  I++N  RG
Sbjct: 176 SPARAAQLGIELLS-LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARG 234
Query: 234 AHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEET 287
             +DE  L              DV+  EP     +  L  VV+ PH+G+ T E 
Sbjct: 235 GLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 288

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 15/239 (6%)
Query: 58  DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
           DA+ + + P L ++     G             V +T  P                   R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RVCEFDEFVKSGKWKNGHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
            +   D FV+SG+++       G+     +VG +G+G IG A+A R++ +G  + YH+R 
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHAR- 176
Query: 177 EKSDANYKYYTNIIDLA-----SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
           +  D   +    +  +A     ++   +++A  L  +T H+VN +++  + P  +L+N  
Sbjct: 177 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENE----PEVPEQ----MLGLNNVVLLPHVGS 282
           RG+ +DE  +++            DV+E E     + P+Q    +L   N +  PH+GS
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 15/239 (6%)
Query: 58  DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
           DA+ + + P L ++     G             V +T  P                   R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RVCEFDEFVKSGKWKNGHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
            +   D FV+SG+++       G+     +VG +G+G IG A+A R++ +G  + YH+R 
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHAR- 176
Query: 177 EKSDANYKYYTNIIDLA-----SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
           +  D   +    +  +A     ++   +++A  L  +T H+VN +++  + P  +L+N  
Sbjct: 177 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENE----PEVPEQ----MLGLNNVVLLPHVGS 282
           RG+ +DE  +++            DV+E E     + P+Q    +L   N +  PH+GS
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 4/253 (1%)
Query: 59  AELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRR 118
           A++I++   L++V     G             + V NTP                   R+
Sbjct: 81  ADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQ 140
Query: 119 VCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHS--R 175
           + +    +K GKW+   F +G++ +GK++GI+GLGRIG  +A R+++FG   I Y     
Sbjct: 141 IPQATASMKDGKWERKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIIS 199
Query: 176 SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
            E S +       + ++   C  + V   L   T  ++N            ++N  RG  
Sbjct: 200 PEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGI 259
Query: 236 IDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLV 295
           +DE  L+             DV+  EP     ++   NV+  PH+G+ T+E      + +
Sbjct: 260 VDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEI 319
Query: 296 IENLVAHFSNKPL 308
               V     K L
Sbjct: 320 AVQFVDMVKGKSL 332

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 15/239 (6%)
Query: 58  DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
           DA+ + + P L ++     G             V +T  P                   R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RVCEFDEFVKSGKWKNGHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
            +   D FV+SGK++       G+     +VG +G+G IG A+A R++ +G  + YH  +
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHE-A 176
Query: 177 EKSDANYKYYTNIIDLA-----SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
           +  D   +    +  +A     ++   +++A  L  +T H+VN +++  + P  +L+N  
Sbjct: 177 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENE----PEVPEQ----MLGLNNVVLLPHVGS 282
           RG+ +DE  +++            DV+E E     + P+Q    +L   N +  PH+GS
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 15/239 (6%)
Query: 58  DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
           DA+ + + P L ++     G             V +T  P                   R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RVCEFDEFVKSGKWKNGHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
            +   D FV+SGK++       G+     +VG +G+G IG A+A R++ +G  + YH  +
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHE-A 176
Query: 177 EKSDANYKYYTNIIDLA-----SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
           +  D   +    +  +A     ++   +++A  L  +T H+VN +++  + P  +L+N  
Sbjct: 177 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENE----PEVPEQ----MLGLNNVVLLPHVGS 282
           RG+ +DE  +++            DV+E E     + P+Q    +L   N +  PH+GS
Sbjct: 237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 128/306 (41%), Gaps = 10/306 (3%)
Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           M+++ VL+  P+     Q L     L  ++ +        E    + A++  +K      
Sbjct: 1   MKRMKVLVAAPLHEKAIQVLK-DAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRR 59
Query: 61  LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVC 120
           +I+S P L+++A   VG             + V N P                   R++ 
Sbjct: 60  VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIA 119
Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRS 176
             D  ++ G W      +G +  GK++GI+G GRIG  +AK   A G  I     Y +  
Sbjct: 120 FADRKMREGVWAKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEE 178
Query: 177 EKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI 236
              + N K+  ++  L     ++ +   L E T+H++N + +  +  + ILIN  RG  +
Sbjct: 179 RAKEVNGKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVV 237
Query: 237 DEPELVSXXXXXXXXXXXXDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAMADL 294
           D   LV             DV+E EP +P+   +   +NVVL PH+G+ T E  +     
Sbjct: 238 DTNALVKALKEGWIAGAGLDVFEEEP-LPKDHPLTKFDNVVLTPHIGASTVEAQERAGVE 296
Query: 295 VIENLV 300
           V E +V
Sbjct: 297 VAEKVV 302

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 15/239 (6%)
Query: 58  DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXR 117
           DA+ + + P L ++     G             V +T  P                   R
Sbjct: 59  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 118
Query: 118 RVCEFDEFVKSGKWKNGHFEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
            +   D FV+SG+++       G+     +VG +G G IG A A R++ +G  + YH+ +
Sbjct: 119 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHA-A 177
Query: 177 EKSDANYKYYTNIIDLA-----SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
           +  D   +    +  +A     ++   +++A  L  +T H+VN +++  + P  +L+N  
Sbjct: 178 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 237
Query: 232 RGAHIDEPELVSXXXXXXXXXXXXDVYENE----PEVPEQ----MLGLNNVVLLPHVGS 282
           RG+ +DE  +++            DV+E E     + P+Q    +L   N +  PH+GS
Sbjct: 238 RGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGS 296

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRSEKSDANYKYYTNIIDLASN 195
           ++  G+++GI+GLGR+G A+A R +AFG  +     Y S   +     +  + + DL  +
Sbjct: 164 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFH 223
Query: 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXX 255
              + + C L E  HH++N   +  +     L+N  RG  +DE  L              
Sbjct: 224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 283
Query: 256 DVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAM 291
           DV+E+EP    Q  +    N++  PH    +E+ S  M
Sbjct: 284 DVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM 321

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 15/226 (6%)
Query: 90  AVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGI 149
            +R++N P                   R + +    +++G ++     +G +   ++VG+
Sbjct: 91  GIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGV 150
Query: 150 VGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEE 208
           +G G IG    K  + FG   I+Y     K D     Y ++ DL     ++ +     E+
Sbjct: 151 MGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQ 210
Query: 209 THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPE----- 263
             HI+N    + + P  I+IN  R   ID   ++S            D YE E E     
Sbjct: 211 NTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNL 270
Query: 264 ---------VPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
                    + +++LG+ NVVL PH+   TE     M    +++LV
Sbjct: 271 AKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLV 316

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRSEKSDANYKYYTNIIDLAS 194
            ++  G+++GI+GLGR+G A+A R +AFG  +     Y S   +     +  + + DL  
Sbjct: 166 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLF 225
Query: 195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXX 254
           +   + + C L E  HH++N   +  +     L+N  RG  +DE  L             
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 255 XDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAM 291
            DV+E+EP    Q  +    N++  PH    +E+ S  M
Sbjct: 286 LDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM 324

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRSEKSDANYKYYTNIIDLAS 194
            ++  G+++GI+GLGR+G A+A R +AFG  +     Y S   +     +  + + DL  
Sbjct: 166 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLF 225
Query: 195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXX 254
           +   + + C L E  HH++N   +  +     L+N  RG  +DE  L             
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 255 XDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAM 291
            DV+E+EP    Q  +    N++  PH    +E+ S  M
Sbjct: 286 LDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM 324

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS-----EKSDANYKYYTNIIDLA 193
            ++  G+++G++G GR G A+A R +AFG  + ++        E+S    + YT + DL 
Sbjct: 147 AARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYT-LQDLL 205
Query: 194 SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXX 253
                + + C+L E  HH++N   I  +     L+N  RG  +DE  L            
Sbjct: 206 YQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGA 265
Query: 254 XXDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAMAD 293
             DV+E+EP    Q  +    N++  PH    +E+ S  M +
Sbjct: 266 ALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMRE 307

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 9/239 (3%)
Query: 71  VASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGK 130
           V  +SVG             + V N P                   RR+        +G 
Sbjct: 84  VGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGG 143
Query: 131 WKNGHFELGSK-FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTN 188
           W+     +GS+   GK++GIVG G IG+ +    E+ G  + Y+  S+K    N K   +
Sbjct: 144 WEK--TAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAAS 201
Query: 189 IIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXX 248
           + +L     ++ +    ++ T  ++    +  +     LIN  RG+ +D   L       
Sbjct: 202 LDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEG 261
Query: 249 XXXXXXXDVYENEP-----EVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAH 302
                  DV+  EP          + GL NV+L PH+G  TEE  + +   V   LV +
Sbjct: 262 HLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEY 320

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 122 FDEFVKSGKWK-NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE--- 177
           +++ VK G+W   G         GK++G VG GRIG  + +R++ FGC + YH R +   
Sbjct: 148 YNQVVK-GEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAP 206
Query: 178 --KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
             + +   K+  ++ ++   C ++++   LTE+T  + N+++I  L    +++N  RGA 
Sbjct: 207 ELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAI 266
Query: 236 IDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLG-LNNVVLLPHVGSDT 284
           ++   +V             DV++ +P   +     + N  + PH    T
Sbjct: 267 MERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 122 FDEFVKSGKWK-NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE--- 177
           +++ VK G+W   G         GK++G VG GRIG  + +R++ FGC + YH R +   
Sbjct: 142 YNQVVK-GEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAP 200
Query: 178 --KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
             + +   K+  ++ ++   C ++++   LTE+T  + N+++I  L    +++N  RGA 
Sbjct: 201 ELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAI 260
Query: 236 IDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLG-LNNVVLLPHVGSDT 284
           ++   +V             DV++ +P   +     + N  + PH    T
Sbjct: 261 MERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 6/159 (3%)
Query: 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRSEKSDANYKYYTNIIDLAS 194
            ++  G+++GI+GL R+G A+A R +AFG  +     Y S   +     +  + + DL  
Sbjct: 166 AARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLF 225
Query: 195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXX 254
           +   + + C L E  HH++N   +  +     L+N  RG  +DE  L             
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 255 XDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAM 291
            DV+E+EP    Q  +    N++  PH    +E+ S  M
Sbjct: 286 LDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM 324

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 124/309 (40%), Gaps = 18/309 (5%)
Query: 20  LAARFTLFKLWTQSCKNKFFQENSSAIRAVV--GDTKCGADAELIDSLPT-LEIVASYSV 76
           + A  T    + Q+ + K + +  + I+  V  G      +A+LI  LP+ L++ A+   
Sbjct: 30  IPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGA 89
Query: 77  GXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGK---WKN 133
           G             V   N+                    R     +   ++G    +  
Sbjct: 90  GFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNR 149
Query: 134 GHFELGSKF---SGKSVGIVGLGRIGTAIAKR-VEAFGCPISYH------SRSEKSDANY 183
            H E+G       G  +G VGLG I   IA++ V   G  + Y+      + +EK+    
Sbjct: 150 VHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-LGA 208
Query: 184 KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVS 243
           +   ++ +LA     + V+    + THH+++     A+ P   ++N  RG  I +  L++
Sbjct: 209 ERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIA 268
Query: 244 XXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAH- 302
                       DV+E EP+V ++++ + +V L  H+G    ET      L + N+    
Sbjct: 269 ALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328
Query: 303 FSNKPLLTP 311
              KPLLTP
Sbjct: 329 LQGKPLLTP 337

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 115/306 (37%), Gaps = 13/306 (4%)
Query: 16  LEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYS 75
           LE   AA +T  +    +  ++  +E+      +   ++     ++I++   L  + +++
Sbjct: 24  LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA 83
Query: 76  VGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN-- 133
           +G             + V N P                   R V E +     G W    
Sbjct: 84  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 143
Query: 134 -GHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTNIID 191
            G FE      GK +GI+G G IGT +    E+ G  + ++    K    N     ++ D
Sbjct: 144 AGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSD 199
Query: 192 LASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXX 251
           L +   ++ +       T +++  K I  + P  +LIN  RG  +D P L          
Sbjct: 200 LLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 259
Query: 252 XXXXDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNK 306
               DV+  EP          +   +NV+L PH+G  T+E  + +   V   L+ +  N 
Sbjct: 260 GAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 319
Query: 307 PLLTPV 312
             L+ V
Sbjct: 320 STLSAV 325

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 115/306 (37%), Gaps = 13/306 (4%)
Query: 16  LEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYS 75
           LE   AA +T  +    +  ++  +E+      +   ++     ++I++   L  + +++
Sbjct: 24  LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA 83
Query: 76  VGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN-- 133
           +G             + V N P                   R V E +     G W    
Sbjct: 84  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 143
Query: 134 -GHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTNIID 191
            G FE      GK +GI+G G IGT +    E+ G  + ++    K    N     ++ D
Sbjct: 144 AGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSD 199
Query: 192 LASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXX 251
           L +   ++ +       T +++  K I  + P  +LIN  RG  +D P L          
Sbjct: 200 LLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 259
Query: 252 XXXXDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNK 306
               DV+  EP          +   +NV+L PH+G  T+E  + +   V   L+ +  N 
Sbjct: 260 GAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 319
Query: 307 PLLTPV 312
             L+ V
Sbjct: 320 STLSAV 325

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 12/188 (6%)
Query: 135 HFELGSKF---SGKSVGIVGLGRIGTAIAKR-VEAFGCPISYH------SRSEKSDANYK 184
           H E+G       G  +G VGLG I   IA++ V   G  + Y+      + +EK+    +
Sbjct: 151 HLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-LGAE 209
Query: 185 YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSX 244
              ++ +LA     + V+    + THH+++     A+ P   ++N  RG  I +  L++ 
Sbjct: 210 RVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAA 269
Query: 245 XXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAH-F 303
                      DV+E EP+V ++++ + +V L  H+G    ET      L + N+     
Sbjct: 270 LKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLL 329
Query: 304 SNKPLLTP 311
             KPLLTP
Sbjct: 330 QGKPLLTP 337

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 9/196 (4%)
Query: 117 RRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
           R++  + E  K   W++  ++      G+++ I+G G IG  IA   + FG  +   SRS
Sbjct: 116 RQLPLYREQQKQRLWQSHPYQ---GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRS 172
Query: 177 EKSDANYKYYTNIIDL---ASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
            +  A +     +  L    +   +++     T ETHH+      +   P  IL N+GRG
Sbjct: 173 GRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRG 232
Query: 234 AHIDEPELVSXXXXXXXXXXXXDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSKAMA 292
             I+E +L++            DV+E EP      + G  N+++ PH  +        +A
Sbjct: 233 NAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPH--NSAYSFPDDVA 290
Query: 293 DLVIENLVAHFSNKPL 308
            + + N +     +PL
Sbjct: 291 QIFVRNYIRFIDGQPL 306

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 123/309 (39%), Gaps = 18/309 (5%)
Query: 20  LAARFTLFKLWTQSCKNKFFQENSSAIRAVV--GDTKCGADAELIDSLPT-LEIVASYSV 76
           + A  T    + Q+ + K + +  + I+  V  G      +A+LI  LP+ L++ A+   
Sbjct: 30  IPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGA 89
Query: 77  GXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGK---WKN 133
           G             V   N+                    R     +   ++G    +  
Sbjct: 90  GFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNR 149
Query: 134 GHFELGSKF---SGKSVGIVGLGRIGTAIAKR-VEAFGCPISYH------SRSEKSDANY 183
            H E+G       G  +G VGLG I   IA++ V   G  + Y+      + +EK+    
Sbjct: 150 VHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-LGA 208
Query: 184 KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVS 243
           +   ++ +LA     + V+    + THH+++     A+ P   ++N  RG  I +  L++
Sbjct: 209 ERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIA 268
Query: 244 XXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAH- 302
                       DV+E EP V ++++ + +V L  H+G    ET      L + N+    
Sbjct: 269 ALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328
Query: 303 FSNKPLLTP 311
              KPLLTP
Sbjct: 329 LQGKPLLTP 337

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 113/306 (36%), Gaps = 13/306 (4%)
Query: 16  LEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYS 75
           LE   AA +T  +    +  ++  +E+      +   ++     ++I++   L  +  + 
Sbjct: 23  LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFC 82
Query: 76  VGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN-- 133
           +G             + V N P                   R V E +     G W    
Sbjct: 83  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 142
Query: 134 -GHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTNIID 191
            G FE      GK +GI+G G IGT +    E+ G  + ++    K    N     ++ D
Sbjct: 143 AGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSD 198
Query: 192 LASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXX 251
           L +   ++ +       T +++  K I  + P  +LIN  RG  +D P L          
Sbjct: 199 LLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLA 258
Query: 252 XXXXDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNK 306
               DV+  EP          +   +NV+L PH+G  T+E  + +   V   L+ +  N 
Sbjct: 259 GAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 318
Query: 307 PLLTPV 312
             L+ V
Sbjct: 319 STLSAV 324

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 7/172 (4%)
Query: 117 RRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
           RR  ++        WK        +FS   VGI G G +G  +A+ ++A+G P+   SRS
Sbjct: 115 RRFDDYQALKNQALWKPLPEYTREEFS---VGIXGAGVLGAKVAESLQAWGFPLRCWSRS 171
Query: 177 EKSDANYKYYTNIIDLAS---NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
            KS    + Y    +L +     ++LI     T +T  I+N +++D L     ++N+ RG
Sbjct: 172 RKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARG 231
Query: 234 AHIDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLN-NVVLLPHVGSDT 284
            H+ E +L++            DV+  EP   E  L  +  V   PH+ + T
Sbjct: 232 VHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWRHPRVAXTPHIAAVT 283

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 110/261 (42%), Gaps = 15/261 (5%)
Query: 49  VVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXX 108
           +V  ++     ++I+    L+I+A   +G             ++V   P           
Sbjct: 50  IVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELT 109
Query: 109 XXXXXXXXRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC 168
                   R++       KSG +K      G + +GK++GIVG GRIGT +     A G 
Sbjct: 110 IGLMIAAARKMYTSMALAKSGIFKKIE---GLELAGKTIGIVGFGRIGTKVGIIANAMGM 166
Query: 169 PI------SYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALG 222
            +          ++EK +A      ++ +L  N  ++ +  +++++   I++    + + 
Sbjct: 167 KVLAYDILDIREKAEKINAK---AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMK 223
Query: 223 PSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVPE---QMLGLNNVVLLPH 279
            + I++N  R   ++   L+             DV+ NEP   E   ++L    V++  H
Sbjct: 224 DNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTH 283
Query: 280 VGSDTEETSKAMADLVIENLV 300
           +G+ T+E  K +A++  +NL+
Sbjct: 284 IGAQTKEAQKRVAEMTTQNLL 304

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 14/198 (7%)
Query: 117 RRVCEFDEFVKSGKWKNG---------HFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFG 167
           RR+ ++   +K G W+           +F +G    G+++GI G G+IG  +A    AFG
Sbjct: 124 RRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFG 183
Query: 168 CPISYHSR---SEKSDANYKYYTNIID-LASNCQILIVACSLTEETHHIVNRKVIDALGP 223
             +    R    E++ A+        D L     +L V   L +ET  I+    +  + P
Sbjct: 184 MNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKP 243
Query: 224 SGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENEPEVP-EQMLGLNNVVLLPHVGS 282
           + + +N  R   ++E  +V+            DV+E EP +    +L + N +  PH+G 
Sbjct: 244 TALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGY 303
Query: 283 DTEETSKAMADLVIENLV 300
              E+ +    +  +N++
Sbjct: 304 VERESYEMYFGIAFQNIL 321

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 101/246 (41%), Gaps = 18/246 (7%)
Query: 60  ELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRV 119
           EL+   P L+++ + SVG             + VT+ P                   +R+
Sbjct: 57  ELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRL 116
Query: 120 CEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS 179
              ++ VK   +      L  + +  ++G++G GRIG+ +A    AFG  +  +   ++ 
Sbjct: 117 KRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRE 176
Query: 180 DANYK--YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
           D   K   YT++ +L     ++ +    T+ETHH +N + I        LIN  RG  +D
Sbjct: 177 DLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVD 236
Query: 238 EPELVSXXXXXXXXXXXXDVYENEP----------EVPEQMLGL------NNVVLLPHVG 281
              L              DV+E+E           +  ++ L +      +NV++ PH+ 
Sbjct: 237 TDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIA 296
Query: 282 SDTEET 287
             T+++
Sbjct: 297 YYTDKS 302

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 110/306 (35%), Gaps = 13/306 (4%)
Query: 16  LEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYS 75
           LE   AA +T  +    +  ++  +E+      +   ++     ++I++   L  +  + 
Sbjct: 24  LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFC 83
Query: 76  VGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN-- 133
           +G             + V N P                   R V E +     G W    
Sbjct: 84  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 143
Query: 134 -GHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTNIID 191
            G FE      GK +GI+G G IGT +    E+ G  + ++    K    N     ++ D
Sbjct: 144 AGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQHLSD 199
Query: 192 LASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXX 251
           L +   ++ +       T +    K I    P  +LIN  RG  +D P L          
Sbjct: 200 LLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLA 259
Query: 252 XXXXDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNK 306
               DV+  EP          +   +NV+L PH+G  T+E  + +   V   L+ +  N 
Sbjct: 260 GAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 319
Query: 307 PLLTPV 312
             L+ V
Sbjct: 320 STLSAV 325

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 112/306 (36%), Gaps = 13/306 (4%)
Query: 16  LEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYS 75
           LE   AA +T  +    +  ++  +E+      +   ++     ++I++   L  + +++
Sbjct: 18  LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA 77
Query: 76  VGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSG---KWK 132
           +G             + V N P                   R V E +     G   K  
Sbjct: 78  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA 137
Query: 133 NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-ANYKYYTNIID 191
            G FE      GK +GI+G G IGT +    E+ G  + ++    K    N     ++ D
Sbjct: 138 AGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQHLSD 193
Query: 192 LASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXX 251
           L +   ++ +       T +    K I    P  +LIN  RG  +D P L          
Sbjct: 194 LLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKHLA 253
Query: 252 XXXXDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNK 306
               DV+  EP          +   +NV+L PH+G  T+E  + +   V   L+ +  N 
Sbjct: 254 GAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 313
Query: 307 PLLTPV 312
             L+ V
Sbjct: 314 STLSAV 319

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 11/194 (5%)
Query: 124 EFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR-----SE 177
           E+ + G W                VG V  GRIG A+ +R+  F   + Y  R     S 
Sbjct: 171 EWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESV 230
Query: 178 KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
           + + N  ++    D+   C ++ + C L  ET H++N + +        ++N  RG   D
Sbjct: 231 EKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD 290
Query: 238 EPELVSXXXXXXXXXXXXDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSKAMADL 294
              +              DV+  +P   + P + +  N   + PH+   T       A  
Sbjct: 291 RDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQARYAAG 348
Query: 295 VIENLVAHFSNKPL 308
             E L   F  +P+
Sbjct: 349 TREILECFFEGRPI 362

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 11/194 (5%)
Query: 124 EFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR-----SE 177
           E+ + G W                VG V  GRIG A+ +R+  F   + Y  R     S 
Sbjct: 171 EWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESV 230
Query: 178 KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
           + + N  ++    D+   C ++ + C L  ET H++N + +        ++N  RG   D
Sbjct: 231 EKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD 290
Query: 238 EPELVSXXXXXXXXXXXXDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSKAMADL 294
              +              DV+  +P   + P + +  N   + PH+   T       A  
Sbjct: 291 RDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQARYAAG 348
Query: 295 VIENLVAHFSNKPL 308
             E L   F  +P+
Sbjct: 349 TREILEXFFEGRPI 362

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 11/194 (5%)
Query: 124 EFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR-----SE 177
           E+ + G W                VG V  GRIG A+ +R+  F   + Y  R     S 
Sbjct: 170 EWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESV 229
Query: 178 KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
           + + N  ++    D+   C ++ + C L  ET H++N + +        ++N  RG   D
Sbjct: 230 EKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD 289
Query: 238 EPELVSXXXXXXXXXXXXDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSKAMADL 294
              +              DV+  +P   + P + +  N   + PH+   T       A  
Sbjct: 290 RDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQARYAAG 347
Query: 295 VIENLVAHFSNKPL 308
             E L   F  +P+
Sbjct: 348 TREILECFFEGRPI 361

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 17/199 (8%)
Query: 125 FVKSGKW-KNGHFELGS------KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
           ++ S  W +NG + +           G  VG V  GRIG  + + +  F   + Y  R  
Sbjct: 166 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 225
Query: 178 KSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
             +A     N  ++    D+   C ++ + C L  ET H++N + +        L+N  R
Sbjct: 226 LPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTAR 285
Query: 233 GAHIDEPELVSXXXXXXXXXXXXDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSK 289
           G   D   +V             DV+  +P   + P + +  N   + PH+   +     
Sbjct: 286 GKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNG--MTPHISGTSLSAQT 343
Query: 290 AMADLVIENLVAHFSNKPL 308
             A    E L  +F  +P+
Sbjct: 344 RYAAGTREILECYFEGRPI 362

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 17/199 (8%)
Query: 125 FVKSGKW-KNGHFELGS------KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
           ++ S  W +NG + +           G  VG V  GRIG  + + +  F   + Y  R  
Sbjct: 165 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 224
Query: 178 KSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
             +A     N  ++    D+   C ++ + C L  ET H++N + +        L+N  R
Sbjct: 225 LPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTAR 284
Query: 233 GAHIDEPELVSXXXXXXXXXXXXDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSK 289
           G   D   +V             DV+  +P   + P + +  N   + PH+   +     
Sbjct: 285 GKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNG--MTPHISGTSLSAQT 342
Query: 290 AMADLVIENLVAHFSNKPL 308
             A    E L  +F  +P+
Sbjct: 343 RYAAGTREILECYFEGRPI 361

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFG-----CPISYHSRSEKSDANYKYYTNIIDLA 193
           G     +++GIVG+G +G+ +  R+EA G     C     +R ++ D     +  + +L 
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGD-----FRTLDELV 168
Query: 194 SNCQILIVACSLTEE----THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXX 249
               +L     L ++    T H+ +  +I  L P  ILIN  RG  +D   L++      
Sbjct: 169 QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQ 228
Query: 250 XXXXXXDVYENEPEVPEQML 269
                 DV+E EP++   +L
Sbjct: 229 PLSVVLDVWEGEPDLNVALL 248

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 8/189 (4%)
Query: 117 RRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
           + + E +E  K+G ++     L     GK++GI+G G IG  +A   +AFG  +  ++RS
Sbjct: 98  KNILENNELXKAGIFRQSPTTL---LYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRS 154
Query: 177 EKSDANYKYYT-NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
              D N    + +  DL      +++A  LT++T   VN +++     +  ++N+ R   
Sbjct: 155 -SVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADV 213
Query: 236 IDEPELVSXXXXXXXXXXXXDVYENEPEVPEQMLGLNNVVLLPHV-GSDTEETSKAMADL 294
           + +P+ +             DV+ NEPE+ E    L N +L PHV G  + E       L
Sbjct: 214 VSKPDXIGFLKERSDVWYLSDVWWNEPEITET--NLRNAILSPHVAGGXSGEIXDIAIQL 271
Query: 295 VIENLVAHF 303
             EN+   F
Sbjct: 272 AFENVRNFF 280

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Query: 131 WKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE-KSDANYKYYTNI 189
           +K   F    +    +VG+VGLGRIG   A+     G  +      E K   +Y    ++
Sbjct: 133 FKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSL 192
Query: 190 IDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXX 249
            ++     I+ +     +E   +V R  +  +    IL+N  RG  +D   ++       
Sbjct: 193 DEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGK 252
Query: 250 XXXXXXDVYENEPEV------------P--EQMLGLNNVVLL-PHVGSDTEETSKAMADL 294
                 DV + E  V            P  E+++ L   VL+ PH+GS T+E  K M ++
Sbjct: 253 LGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEV 312
Query: 295 VIENL 299
             +NL
Sbjct: 313 SYQNL 317

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 9/191 (4%)
Query: 117 RRVCEFDEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR 175
           +R+ ++ E  K G + ++    L     G+ V ++GLG IGT + K + A G  +   SR
Sbjct: 99  KRIIQYGEKXKRGDYGRDVEIPL---IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSR 155
Query: 176 SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
           + K +  +++  ++ +     +  + A  L + T  +V  + +       + +N+GR   
Sbjct: 156 TPK-EGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEV 214
Query: 236 IDEPELVSXXXXXXXXXXXXDVY--ENEPEVPEQMLGLNNVVLLPHV--GSDTEETSKAM 291
           +D   ++             DV+   N+     +   L NVV  P V  G   E   +  
Sbjct: 215 LDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQX 274
Query: 292 ADLVIENLVAH 302
               + NL+ +
Sbjct: 275 VXEAVRNLITY 285

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDANYK--YYTNIIDLASNC 196
           S  +G+ + I G G+IG ++A +  A G   I  ++    +D  ++   +T   D  +  
Sbjct: 133 STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATA 192
Query: 197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXD 256
             ++ A  LT  THH+ + ++        +LINIGRG  +D   L++            D
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 257 VYENEPEVPEQMLGL-NNVVLLPHV 280
           V E EP   +  L   ++V++ PH+
Sbjct: 253 VTEPEPLPTDHPLWQRDDVLITPHI 277

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 138 LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS--RSEKSDANYKYYTNIIDLASN 195
           +G +   + VG+VG G IG    + +E FG  +  +   R+ + +    Y  ++ DL   
Sbjct: 140 IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQ 199
Query: 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXX 255
             ++ +         H++N + I  +    +++N+ RG  +D   ++             
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 256 DVYENE----------PEVPE----QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
           DVYE E           E P+     ++   NV++ PH    T    + M     +N + 
Sbjct: 260 DVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNMVVKAFDNNLE 319
Query: 302 HFSNKPLLTPV 312
               K   TPV
Sbjct: 320 LVEGKEAETPV 330

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 146 SVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDANYKYYTNIIDLASNCQILIVACS 204
           +VG++G+G IG+A+A+   A G   I+Y          +  YT+   +     I+ +   
Sbjct: 150 TVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTP 209
Query: 205 LTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXXDVYENE--- 261
           L   T +++  K +  +  S  LIN  RG  +D   L+             D    E   
Sbjct: 210 LFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSY 269
Query: 262 --------PEVPEQ---MLGLNNVVLLPHVGSDTEETSKAMADLVIEN 298
                    E+PE    +  + NVV+ PH    TE + + M  + + +
Sbjct: 270 FGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTD 317

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 74/191 (38%), Gaps = 16/191 (8%)
Query: 138 LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS--RSEKSDANYKYYTNIIDLASN 195
           +G +   + VG+VG G IG    + +E FG  +  +   R+ + +    Y  ++ DL   
Sbjct: 140 IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQ 199
Query: 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXX 255
             ++ +         H++N + I  +    +++N+ RG  +D   ++             
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 256 DVYENE----------PEVPE----QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
           DVYE E           E P+     ++   NV++ P     T    + M     +N + 
Sbjct: 260 DVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLE 319
Query: 302 HFSNKPLLTPV 312
               K   TPV
Sbjct: 320 LVEGKEAETPV 330

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 16/170 (9%)
Query: 138 LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYK--YYTNIIDLASN 195
           +G +   + VG+VG G IG    + +E FG  +  +   +  +   K  Y  ++ DL   
Sbjct: 140 IGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDSLDDLYKQ 199
Query: 196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSXXXXXXXXXXXX 255
             ++ +         H++N K I  +    +++N  RG  +D   ++             
Sbjct: 200 ADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVM 259
Query: 256 DVYENE----------PEVPEQMLG----LNNVVLLPHVGSDTEETSKAM 291
           D YE+E           E P++ L       NV++ PH    T    + M
Sbjct: 260 DTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNM 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-164
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	1e-156
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-128
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-116
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-111
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-110
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-108
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-107
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	1e-104
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	1e-100
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	1e-87
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	9e-85
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	3e-83
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	9e-77
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	3e-76
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	2e-75
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	9e-72
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	2e-69
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	2e-68
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	2e-64
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	4e-64
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	5e-63
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	8e-63
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	9e-63
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	1e-62
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	2e-62
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-60
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	1e-54
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	2e-53
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	8e-52
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	1e-46
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	3e-46
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	2e-11
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	8e-05
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	2e-04

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  459 bits (1184), Expect = e-164
 Identities = 218/313 (69%), Positives = 258/313 (82%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           ME IGVLM  PMS YLEQEL  RF LF+ WTQ  +  F    + +IRAVVG++  GADAE
Sbjct: 21  MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 80

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           LID+LP LEIV+S+SVGLDK+DL KC++K VRVTNTPDVLTDDVADLA+GL+LAVLRR+C
Sbjct: 81  LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
           E D++V+ G WK G F+L +KFSGK VGI+GLGRIG A+A+R EAF CPISY SRS+K +
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200

Query: 181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE 240
            NY YY ++++LASN  IL+VAC LT ET HI+NR+VIDALGP G+LINIGRG H+DEPE
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260

Query: 241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV 300
           LVSAL+EGRL GAGLDV+E EPEVPE++ GL NVVLLPHVGS T ET K MADLV+ NL 
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 320

Query: 301 AHFSNKPLLTPVI 313
           AHFS KPLLTPV+
Sbjct: 321 AHFSGKPLLTPVV 333

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  438 bits (1129), Expect = e-156
 Identities = 123/311 (39%), Positives = 183/311 (58%), Gaps = 2/311 (0%)

Query: 3   KIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELI 62
           K  +L+  PM  ++  EL   +++ +L+  + +    +    +IRAV      G   E +
Sbjct: 30  KPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPAL-EAALPSIRAVATGGGAGLSNEWM 88

Query: 63  DSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEF 122
           + LP+L I+A   VG DK+DL + + + + VT TP VL DDVADL + L+LAVLRRV + 
Sbjct: 89  EKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDG 148

Query: 123 DEFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA 181
           D  V+ G+W  G    LG    GK +G++GLG+IG A+A R EAFG  + Y +RS  S  
Sbjct: 149 DRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGV 208

Query: 182 NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPEL 241
           ++  + + +DLA +  +L V  + +  T +IV+  ++ ALGP GI++N+ RG  +DE  L
Sbjct: 209 DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDAL 268

Query: 242 VSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVA 301
           + AL  G +AGAGLDV+ NEP +  +     N VL+PH GS T ET  AM  LV+ NL A
Sbjct: 269 IEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAA 328

Query: 302 HFSNKPLLTPV 312
           HF+ +     V
Sbjct: 329 HFAGEKAPNTV 339

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  367 bits (945), Expect = e-128
 Identities = 101/319 (31%), Positives = 149/319 (46%), Gaps = 7/319 (2%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTL-FKLWTQSCKNKFFQENSSAIRAVVGDTKCGADA 59
                  +    +  +E EL  RF L   L             +     +         A
Sbjct: 26  HPIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITA 85

Query: 60  ELIDSL-PTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRR 118
           E+I  L P L+ +A+ SVG D ID+   +   ++V +TPDVL+D  A++A+ LVL   RR
Sbjct: 86  EVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRR 145

Query: 119 VCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
             E D  V+SG W        LG   +G+ +GI G+GRIG AIA R   FG  I YH+R+
Sbjct: 146 GYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRT 205

Query: 177 EKSDA---NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
             S A      Y+  +  L     I ++A     E    ++   I  +    ++INI RG
Sbjct: 206 RLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRG 265

Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMAD 293
             I++  L+ AL    L  AGLDV+ NEP +  +   L+N+ L PH+GS T ET  AM  
Sbjct: 266 DLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGW 325

Query: 294 LVIENLVAHFSNKPLLTPV 312
           L+I+ + A   +      +
Sbjct: 326 LLIQGIEALNQSDVPDNLI 344

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  337 bits (867), Expect = e-116
 Identities = 83/338 (24%), Positives = 151/338 (44%), Gaps = 26/338 (7%)

Query: 1   MEKIGVLMTTPMSNY---LEQELAARFTLFKLWT-------QSCKNKFFQENSSAIRAVV 50
           M +  VL+    + +   L  +   +F +            Q+ + K + +  + I+  V
Sbjct: 1   MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAV 60

Query: 51  GDTKCGA--DAELIDSLP-TLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADL 107
            +       +A+LI  LP +L++ A+   G D +DLD   ++ V   N+        +DL
Sbjct: 61  ENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDL 120

Query: 108 AVGLVLAVLRRVCEFDEFVKSGKWKNGHF------ELGSKFSGKSVGIVGLGRIGTAIAK 161
           A+ L+L+V R     +   ++G  +  +       +      G  +G VGLG I   IA+
Sbjct: 121 ALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIAR 180

Query: 162 R-VEAFGCPISYHSRSEKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNR 215
           + V   G  + Y+  +            +   ++ +LA     + V+    + THH+++ 
Sbjct: 181 KAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE 240

Query: 216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVV 275
               A+ P   ++N  RG  I +  L++AL  G+L  AGLDV+E EP+V ++++ + +V 
Sbjct: 241 AFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVT 300

Query: 276 LLPHVGSDTEETSKAMADLVIENLVAHFSN-KPLLTPV 312
           L  H+G    ET      L + N+       KPLLTP 
Sbjct: 301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPA 338

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  324 bits (833), Expect = e-111
 Identities = 114/264 (43%), Positives = 162/264 (61%), Gaps = 9/264 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           D E+ ++ P L IVA+Y+VG D ID+++   + + VTNTPDVLTD  ADLA  L+LA  R
Sbjct: 58  DKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATAR 117

Query: 118 RVCEFDEFVKSGKWKNGH------FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
            V + D FV+SG+WK         + LG    GK++GI+GLGRIG AIAKR + F   I 
Sbjct: 118 HVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL 177

Query: 172 YHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
           Y+SR+ K +   +    +  + DL      +++A  LT ET+H++N + +  +  + ILI
Sbjct: 178 YYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI 237

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
           NI RG  +D   LV AL EG +AGAGLDV+E EP   E++  L+NVVL PH+GS +    
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297

Query: 289 KAMADLVIENLVAHFSNKPLLTPV 312
           + MA+LV +NL+A    +   T V
Sbjct: 298 EGMAELVAKNLIAFKRGEIPPTLV 321

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  321 bits (825), Expect = e-110
 Identities = 82/263 (31%), Positives = 131/263 (49%), Gaps = 8/263 (3%)

Query: 58  DAELIDSLP-TLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVL 116
             E+ID +P  ++ +++YS+G D IDLD CK + ++V N P  +T   A++A+ L+L   
Sbjct: 57  RKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSA 116

Query: 117 RRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS 174
           RR  E ++ +++  W        +G K   K++GI G G IG A+AKR + F   I Y  
Sbjct: 117 RRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFD 176

Query: 175 RSEKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILIN 229
               S +        ++ ++  L S  Q   +    T ET +  N+  I +L    I++N
Sbjct: 177 THRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVN 236

Query: 230 IGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSK 289
             RG  +D   +V+AL  GRLA AG DV+  EP + E    L N  L PH+GS   +  +
Sbjct: 237 TARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQARE 296

Query: 290 AMADLVIENLVAHFSNKPLLTPV 312
            MA    + + A F    +   +
Sbjct: 297 DMAHQANDLIDALFGGADMSYAL 319

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  316 bits (813), Expect = e-108
 Identities = 105/259 (40%), Positives = 156/259 (60%), Gaps = 6/259 (2%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DAE++D    L+++A YSVG+D +DL+  +++ +RVT+TP VLT+  ADL + L+LAV R
Sbjct: 56  DAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115

Query: 118 RVCEFDEFVKSGKWKNGHFE--LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR 175
           RV E   + + G WK  H E  LG    G ++G+VG+GRIG A+AKR  AFG  + YH+R
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR 175

Query: 176 SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
           + K       + ++ +L     ++ +   LT ETH ++NR+ + A+    IL+N  RGA 
Sbjct: 176 TPKPLP--YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGAL 233

Query: 236 IDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVGSDTEETSKAMADL 294
           +D   LV A L G L GAGLDV + EP  P   +  L N V+ PH+GS    T + MA++
Sbjct: 234 VDTEALVEA-LRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEV 292

Query: 295 VIENLVAHFSNKPLLTPVI 313
            +ENL+A    +    PV+
Sbjct: 293 AVENLLAVLEGREPPNPVV 311

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  314 bits (807), Expect = e-107
 Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 8/263 (3%)

Query: 58  DAELIDSL-PTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVL 116
           D  ++D+    L+++++ SVG+D + LD+ K + +RV  TPDVLTD  A+LAV L+L   
Sbjct: 66  DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125

Query: 117 RRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYH 173
           RR+ E  E VK+G W +    +  G   +  +VGI+GLGRIG AIA+R++ FG     Y 
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185

Query: 174 SRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
            R  + +   ++   + +  +LA+    ++VACSLT  T  + N+     +  + + INI
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245

Query: 231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEP-EVPEQMLGLNNVVLLPHVGSDTEETSK 289
            RG  +++ +L  AL  G++A AGLDV   EP      +L L N V+LPH+GS T  T  
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305

Query: 290 AMADLVIENLVAHFSNKPLLTPV 312
            M+ L   NL+A    +P+ + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSEL 328

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  305 bits (784), Expect = e-104
 Identities = 56/259 (21%), Positives = 106/259 (40%), Gaps = 8/259 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
            AE +  +P L+ +   + GLD +  +      V V        D VA+ A+ L+LA  +
Sbjct: 41  TAEELAKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNADAVAEFALALLLAPYK 99

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
           R+ ++ E +K G +            G+ V ++GLG IGT + K + A G  +   SR+ 
Sbjct: 100 RIIQYGEKMKRGDYGRDVE--IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 157

Query: 178 KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
           K    +++  ++ +     +  + A  L + T  +V  + +  +    + +N+GR   +D
Sbjct: 158 KEGP-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLD 216

Query: 238 EPELVSALLEGRLAGAGLDVYENEPEVPEQ--MLGLNNVVLLPHVGSDT--EETSKAMAD 293
              ++  L E        DV+    +  +      L NVV  P V      E   + M  
Sbjct: 217 RDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVM 276

Query: 294 LVIENLVAHFSNKPLLTPV 312
             + NL+ + +        
Sbjct: 277 EAVRNLITYATGGRPRNIA 295

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  296 bits (760), Expect = e-100
 Identities = 71/268 (26%), Positives = 131/268 (48%), Gaps = 13/268 (4%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DA+ + + P L ++     G D  D+D C  + V +T  PD+LT   A+LA+GL + + R
Sbjct: 58  DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117

Query: 118 RVCEFDEFVKSGKWKNGHFE-LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
            +   D FV+SGK++       G+     +VG +G+G IG A+A R++ +G  + YH   
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAK 177

Query: 177 EKSDANYK----YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR 232
                  +          +L ++   +++A  L  +T H+VN +++  + P  +L+N  R
Sbjct: 178 ALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 237

Query: 233 GAHIDEPELVSALLEGRLAGAGLDVYENE--------PEVPEQMLGLNNVVLLPHVGSDT 284
           G+ +DE  +++AL  G+L G   DV+E E         ++   +L   N +  PH+GS  
Sbjct: 238 GSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 297

Query: 285 EETSKAMADLVIENLVAHFSNKPLLTPV 312
                 +     +N++   + +  +  V
Sbjct: 298 RAVRLEIERCAAQNILQALAGERPINAV 325

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  264 bits (677), Expect = 1e-87
 Identities = 79/264 (29%), Positives = 138/264 (52%), Gaps = 10/264 (3%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
             E++++   L++++ +S G D IDL++   + + VT    +L++ VA+  VGL++ ++R
Sbjct: 55  TREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMR 114

Query: 118 RVCEFDEFVKSGKWKNGHFE-----LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY 172
           ++   D+F++ G+W++               GK VGI+G+G IG AIA+R+  FG  + Y
Sbjct: 115 KIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYY 174

Query: 173 HSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILIN 229
            SR  K +   +    Y +I +L     I+I+A  LT +T+HI+N + +        L+N
Sbjct: 175 WSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERV-KKLEGKYLVN 233

Query: 230 IGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGL-NNVVLLPHVGSDTEETS 288
           IGRGA +DE  +  A+ +G+L G   DV+E EP    ++       VL PH      E  
Sbjct: 234 IGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQ 293

Query: 289 KAMADLVIENLVAHFSNKPLLTPV 312
           + +    +ENL+     +     V
Sbjct: 294 EDVGFRAVENLLKVLRGEVPEDLV 317

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  257 bits (658), Expect = 9e-85
 Identities = 65/318 (20%), Positives = 125/318 (39%), Gaps = 13/318 (4%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           M  +  LM         Q+L   +  +     +        +   I  + G+        
Sbjct: 1   MSLV--LMAQATKPEQLQQLQTTYPDWTFKDAA---AVTAADYDQIEVMYGNHP-LLKTI 54

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           L      L+ V   S G+D + L   +   V V NT  +  D +++  +  +L+V+R   
Sbjct: 55  LARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYH 114

Query: 121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD 180
                 +  +         S  +G+ + I G G+IG ++A +  A G  +   + +    
Sbjct: 115 AAWLNQRGARQWALPMT-TSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPA 173

Query: 181 ANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
            ++     +T   D  +    ++ A  LT  THH+ + ++        +LINIGRG  +D
Sbjct: 174 DHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVD 233

Query: 238 EPELVSALLEGRLAGAGLDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTEETSKAMADLV 295
              L++AL   +L+ A LDV E EP +P    +   ++V++ PH+          +  + 
Sbjct: 234 TTALMTALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIF 292

Query: 296 IENLVAHFSNKPLLTPVI 313
             N      +  L+   +
Sbjct: 293 AANFAQFVKDGTLVRNQV 310

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  255 bits (654), Expect = 3e-83
 Identities = 61/263 (23%), Positives = 104/263 (39%), Gaps = 7/263 (2%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
             E I     L++  +  +G D +DL    D+ V V       +  VA+  V ++L+++R
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVR 163

Query: 118 RVCEFDEFVKSGKWKNGHF-ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
                 E+ + G W                VG V  GRIG A+ +R+  F   + Y  R 
Sbjct: 164 NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRH 223

Query: 177 EKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
              ++     N  ++    D+   C ++ + C L  ET H++N + +        ++N  
Sbjct: 224 RLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283

Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVGSDTEETSKA 290
           RG   D   +  AL  GRLAG   DV+  +P   +     +    + PH+   T      
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQAR 343

Query: 291 MADLVIENLVAHFSNKPLLTPVI 313
            A    E L   F  +P+    +
Sbjct: 344 YAAGTREILECFFEGRPIRDEYL 366

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  235 bits (602), Expect = 9e-77
 Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 7/251 (2%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
             +        +++ + S G+D ID++   +  V  +N     +  VA+ A  L+LA  +
Sbjct: 40  IKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAK 98

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
            + E +E +K+G ++       +   GK++GI+G G IG  +A   +AFG  +  ++RS 
Sbjct: 99  NILENNELMKAGIFRQS---PTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSS 155

Query: 178 KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID 237
                     +  DL      +++A  LT++T  +VN +++     +  ++N+ R   + 
Sbjct: 156 VDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVS 215

Query: 238 EPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDT-EETSKAMADLVI 296
           +P+++  L E        DV+ NEPE+ E    L N +L PHV      E       L  
Sbjct: 216 KPDMIGFLKERSDVWYLSDVWWNEPEITE--TNLRNAILSPHVAGGMSGEIMDIAIQLAF 273

Query: 297 ENLVAHFSNKP 307
           EN+   F  + 
Sbjct: 274 ENVRNFFEGEG 284

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  235 bits (603), Expect = 3e-76
 Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 12/267 (4%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
             E ++    L I+     G D ID+    D  + V N P    ++ AD  +  +L + R
Sbjct: 76  TREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYR 135

Query: 118 RVCEFDEFVKSGKWKNGHFE------LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS 171
           R     + ++ G       +        ++  G+++GI+GLGR+G A+A R +AFG  + 
Sbjct: 136 RATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVL 195

Query: 172 YHSRSEKSDA----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGIL 227
           ++              +  + + DL  +   + + C L E  HH++N   +  +     L
Sbjct: 196 FYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFL 255

Query: 228 INIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ--MLGLNNVVLLPHVGSDTE 285
           +N  RG  +DE  L  AL EGR+ GA LDV+E+EP    Q  +    N++  PH    +E
Sbjct: 256 VNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSE 315

Query: 286 ETSKAMADLVIENLVAHFSNKPLLTPV 312
           + S  M +     +    + +   +  
Sbjct: 316 QASIEMREEAAREIRRAITGRIPDSLK 342

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  224 bits (574), Expect = 9e-72
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 7/263 (2%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
            AE I     L+++ +  +G D IDL       + V          VA+  +  +L ++R
Sbjct: 77  TAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMR 136

Query: 118 RVCEFDEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS 176
                   V  G+W   G         GK++G VG GRIG  + +R++ FGC + YH R 
Sbjct: 137 NFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRL 196

Query: 177 EKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG 231
           + +         K+  ++ ++   C ++++   LTE+T  + N+++I  L    +++N  
Sbjct: 197 QMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA 256

Query: 232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPHVGSDTEETSKA 290
           RGA ++   +V A+  G + G   DV++ +P   +     + N  + PH    T +    
Sbjct: 257 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLR 316

Query: 291 MADLVIENLVAHFSNKPLLTPVI 313
            A    + L  +F  +   T   
Sbjct: 317 YAAGTKDMLERYFKGEDFPTENY 339

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  217 bits (554), Expect = 2e-69
 Identities = 84/251 (33%), Positives = 133/251 (52%), Gaps = 5/251 (1%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
              +I+S P L+++A   VGLD ID++  K+K + V N P   +  VA+LAVGL+ +V R
Sbjct: 57  TRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVAR 116

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
           ++   D  ++ G W      +G +  GK++GI+G GRIG  +AK   A G  I  +    
Sbjct: 117 KIAFADRKMREGVWAKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP 175

Query: 178 KSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234
             +   +    + ++  L     ++ +   L E T+H++N + +  +  + ILIN  RG 
Sbjct: 176 NEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGP 235

Query: 235 HIDEPELVSALLEGRLAGAGLDVYENEPEVPE-QMLGLNNVVLLPHVGSDTEETSKAMAD 293
            +D   LV AL EG +AGAGLDV+E EP   +  +   +NVVL PH+G+ T E  +    
Sbjct: 236 VVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGV 295

Query: 294 LVIENLVAHFS 304
            V E +V    
Sbjct: 296 EVAEKVVKILK 306

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  215 bits (550), Expect = 2e-68
 Identities = 61/283 (21%), Positives = 118/283 (41%), Gaps = 19/283 (6%)

Query: 48  AVVGDTKCGADAELIDSLPT--LEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVA 105
            VV   +    AE + +L    +  ++  +VG+D ID+ K K+   ++TN P    + +A
Sbjct: 49  GVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIA 108

Query: 106 DLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEA 165
           + A      +LR+    DE V     +     +G +   + VG+VG G IG    + +E 
Sbjct: 109 EHAAIQAARILRQDKAMDEKVARHDLRWAPT-IGREVRDQVVGVVGTGHIGQVFMQIMEG 167

Query: 166 FGCPISYHSR--SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGP 223
           FG  +  +    + + +    Y  ++ DL     ++ +         H++N + I  +  
Sbjct: 168 FGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ 227

Query: 224 SGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ--------------ML 269
             +++N+ RG  +D   ++  L  G++ G  +DVYE E  +  +              ++
Sbjct: 228 DVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLI 287

Query: 270 GLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312
              NV++ P     T    + M     +N +     K   TPV
Sbjct: 288 ARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  206 bits (525), Expect = 2e-64
 Identities = 60/270 (22%), Positives = 103/270 (38%), Gaps = 15/270 (5%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDK--AVRVTNTPDVLTDDVADLAVGLVLAV 115
             E ID    L++V    VG D IDLD        + V          VA+  V  +L +
Sbjct: 75  TKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVL 134

Query: 116 LRRVCEFDEFVKSGKWKNGHF-ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC------ 168
           +R      E + +  W+     +      GK++  +G GRIG  + +R+  F        
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 194

Query: 169 PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI 228
                 +  +     +   NI +L +   I+ V   L   T  ++N++++        L+
Sbjct: 195 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNV-----VLLPHVGS 282
           N  RGA     ++ +AL  G+L G G DV+  +P   +     + N       + PH   
Sbjct: 255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSG 314

Query: 283 DTEETSKAMADLVIENLVAHFSNKPLLTPV 312
            T +     A   +  L + F+ K    P 
Sbjct: 315 TTLDAQTRYAQGTVNILESFFTGKFDYRPQ 344

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  204 bits (521), Expect = 4e-64
 Identities = 63/283 (22%), Positives = 113/283 (39%), Gaps = 18/283 (6%)

Query: 48  AVVGDTKCGADAELIDSLPTLEI--VASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVA 105
           AV+    C A+ + +D    L +  + + + G D ID +  K+    +   P    + +A
Sbjct: 48  AVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIA 107

Query: 106 DLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEA 165
           +LAV   + +LR             +K   F    +    +VG+VGLGRIG   A+    
Sbjct: 108 ELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHG 167

Query: 166 FGCPISYHSRSEKSD-ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS 224
            G  +      E     +Y    ++ ++     I+ +     +E   +V R  +  +   
Sbjct: 168 MGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDG 227

Query: 225 GILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ---------------ML 269
            IL+N  RG  +D   ++ A+  G+L G G DV + E  V  +               + 
Sbjct: 228 AILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVD 287

Query: 270 GLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312
               V++ PH+GS T+E  K M ++  +NL            +
Sbjct: 288 LYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  202 bits (516), Expect = 5e-63
 Identities = 66/268 (24%), Positives = 116/268 (43%), Gaps = 19/268 (7%)

Query: 58  DAELIDSLPTLEIVASYSV----GLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVL 113
             +L+D LP L+I++            IDL+ C DK V V           A+L   LV+
Sbjct: 62  TRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVM 120

Query: 114 AVLRRVCEFDEFVKSGKWKNGHFE---------LGSKFSGKSVGIVGLGRIGTAIAKRVE 164
           A  RR+ ++   +K G W+    +         +G    G+++GI G G+IG  +A    
Sbjct: 121 AAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR 180

Query: 165 AFGCPI----SYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA 220
           AFG  +      +S+       +    +   L     +L V   L +ET  I+    +  
Sbjct: 181 AFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTR 240

Query: 221 LGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVLLPH 279
           + P+ + +N  R   ++E  +V+AL  GR   A +DV+E EP +    +L + N +  PH
Sbjct: 241 MKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPH 300

Query: 280 VGSDTEETSKAMADLVIENLVAHFSNKP 307
           +G    E+ +    +  +N++       
Sbjct: 301 IGYVERESYEMYFGIAFQNILDILQGNV 328

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  206 bits (527), Expect = 8e-63
 Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 4/258 (1%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
           DAE++ + P L+IVA   VGLD +D+D    + V V N P       A+ A+ L+LA  R
Sbjct: 57  DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 116

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR-- 175
           ++   D  ++   WK   F  G++  GK+VG+VGLGRIG  +A+R+ AFG  +  +    
Sbjct: 117 QIPAADASLREHTWKRSSF-SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV 175

Query: 176 -SEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234
              ++        ++ DL +    + V    T ET  +++++ +    P  I++N  RG 
Sbjct: 176 SPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGG 235

Query: 235 HIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADL 294
            +DE  L  A+  G +  AGLDV+  EP     +  L  VV+ PH+G+ T E        
Sbjct: 236 LVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTD 295

Query: 295 VIENLVAHFSNKPLLTPV 312
           V E++    + + +   V
Sbjct: 296 VAESVRLALAGEFVPDAV 313

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  200 bits (512), Expect = 9e-63
 Identities = 71/254 (27%), Positives = 126/254 (49%), Gaps = 4/254 (1%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
            A++I++   L++V     G+D +DL+    K + V NTP+  +   A+L  G+++ + R
Sbjct: 80  TADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLAR 139

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS--- 174
           ++ +    +K GKW+   F +G++ +GK++GI+GLGRIG  +A R+++FG     +    
Sbjct: 140 QIPQATASMKDGKWERKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPII 198

Query: 175 RSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA 234
             E S +       + ++   C  + V   L   T  ++N            ++N  RG 
Sbjct: 199 SPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGG 258

Query: 235 HIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADL 294
            +DE  L+ AL  G+ AGA LDV+  EP     ++   NV+  PH+G+ T+E      + 
Sbjct: 259 IVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEE 318

Query: 295 VIENLVAHFSNKPL 308
           +    V     K L
Sbjct: 319 IAVQFVDMVKGKSL 332

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  200 bits (512), Expect = 1e-62
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 25/286 (8%)

Query: 48  AVVGDTKCGADAELIDSLPT--LEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVA 105
            +         A + + +    ++ +   +VG D ID+   K   +R++N P      +A
Sbjct: 47  GINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIA 106

Query: 106 DLAVGLVLAVLRRVCEFDEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVE 164
           + A+   L +LR + +    +++G + K G F +G +   ++VG++G G IG    K  +
Sbjct: 107 EFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVAIKLFK 165

Query: 165 AFGCPI----SYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA 220
            FG  +     Y  + +  D +   Y ++ DL     ++ +     E+  HI+N    + 
Sbjct: 166 GFGAKVIAYDPYPMKGDHPDFD---YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNL 222

Query: 221 LGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ------------- 267
           + P  I+IN  R   ID   ++S L  G+LAG G+D YE E E                 
Sbjct: 223 MKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWD 282

Query: 268 -MLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV 312
            +LG+ NVVL PH+   TE     M    +++LV   +     T V
Sbjct: 283 ELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEV 328

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  199 bits (509), Expect = 2e-62
 Identities = 63/259 (24%), Positives = 130/259 (50%), Gaps = 11/259 (4%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
             ++I+    L+I+A   +GLD ID ++ + + ++V   P   TD   +L +GL++A  R
Sbjct: 59  TKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAAR 118

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH---- 173
           ++       KSG +K      G + +GK++GIVG GRIGT +     A G  +  +    
Sbjct: 119 KMYTSMALAKSGIFKK--I-EGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD 175

Query: 174 SRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
            R +    N K  + + +L  N  ++ +  +++++   I++    + +  + I++N  R 
Sbjct: 176 IREKAEKINAKAVS-LEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234

Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENEP---EVPEQMLGLNNVVLLPHVGSDTEETSKA 290
             ++   L+  + +G++     DV+ NEP   E   ++L    V++  H+G+ T+E  K 
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294

Query: 291 MADLVIENLVAHFSNKPLL 309
           +A++  +NL+       ++
Sbjct: 295 VAEMTTQNLLNAMKELGMI 313

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  195 bits (497), Expect = 1e-60
 Identities = 69/318 (21%), Positives = 135/318 (42%), Gaps = 17/318 (5%)

Query: 1   MEKIGVLMTTPMSNYLEQELAARF--TLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGAD 58
            ++  +L++   ++Y     AA                   ++       ++ +      
Sbjct: 4   SQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSD---AEKLIGEAHILMAEPA--RA 58

Query: 59  AELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRR 118
             L+     L    S   G+D + LD    +  ++TN   +    +++   G +L+++R+
Sbjct: 59  KPLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQ 117

Query: 119 VCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178
           +  + E  K   W+           G+++ I+G G IG  IA   + FG  +   SRS +
Sbjct: 118 LPLYREQQKQRLWQ--SHPYQG-LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGR 174

Query: 179 SDANY-KYYT--NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH 235
             A + + Y    +  + +   +++     T ETHH+      +   P  IL N+GRG  
Sbjct: 175 ERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNA 234

Query: 236 IDEPELVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSKAMADL 294
           I+E +L++AL  G+L  A LDV+E EP   +  L G  N+++ PH  + +      +A +
Sbjct: 235 INEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS--FPDDVAQI 292

Query: 295 VIENLVAHFSNKPLLTPV 312
            + N +     +PL   +
Sbjct: 293 FVRNYIRFIDGQPLDGKI 310

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  179 bits (457), Expect = 1e-54
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 15/263 (5%)

Query: 60  ELIDSLPTLEIVASYSVGLDKIDLDKCK-----DKAVRVTNTPDV-LTDDVADLAVGLVL 113
             + +   L+ V     G+D I           D ++ +    D  +   + + AV  VL
Sbjct: 52  VEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVL 111

Query: 114 AVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH 173
              RR  ++        WK             SVGI+G G +G  +A+ ++A+G P+   
Sbjct: 112 HWFRRFDDYQALKNQALWKPLPEYT---REEFSVGIMGAGVLGAKVAESLQAWGFPLRCW 168

Query: 174 SRSEKSDANYKYYT---NIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI 230
           SRS KS    + Y     +    +  ++LI     T +T  I+N +++D L     ++N+
Sbjct: 169 SRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNL 228

Query: 231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQML-GLNNVVLLPHVGSDTEETSK 289
            RG H+ E +L++AL  G+L GA LDV+  EP   E  L     V + PH+ + T     
Sbjct: 229 ARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--A 286

Query: 290 AMADLVIENLVAHFSNKPLLTPV 312
              D +   +      +P+   V
Sbjct: 287 EAIDYISRTITQLEKGEPVTGQV 309

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  178 bits (454), Expect = 2e-53
 Identities = 73/264 (27%), Positives = 123/264 (46%), Gaps = 13/264 (4%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
             ++I++   L  + ++++G +++DLD    + + V N P   T  VA+L +G +L +LR
Sbjct: 60  TEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLR 119

Query: 118 RVCEFDEFVKSGKW---KNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHS 174
            V E +     G       G FE      GK +GI+G G IGT +    E+ G  + ++ 
Sbjct: 120 GVPEANAKAHRGVGNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYD 175

Query: 175 RSEK-SDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
              K    N     ++ DL +   ++ +       T +++  K I  + P  +LIN  RG
Sbjct: 176 IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 235

Query: 234 AHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-----MLGLNNVVLLPHVGSDTEETS 288
             +D P L  AL    LAGA +DV+  EP          +   +NV+L PH+G  T+E  
Sbjct: 236 TVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ 295

Query: 289 KAMADLVIENLVAHFSNKPLLTPV 312
           + +   V   L+ +  N   L+ V
Sbjct: 296 ENIGLEVAGKLIKYSDNGSTLSAV 319

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  175 bits (445), Expect = 8e-52
 Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 7/261 (2%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
             E+  +   L  V  +SVG ++++L   + + + V N P   T  VA+L +G ++ ++R
Sbjct: 71  TEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMR 130

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
           R+        +G W+        +  GK++GIVG G IG+ +    E+ G  + Y+  S+
Sbjct: 131 RIFPRSVSAHAGGWEKTAI-GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSD 189

Query: 178 K-SDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI 236
           K    N K   ++ +L     ++ +    ++ T  ++    +  +     LIN  RG+ +
Sbjct: 190 KLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV 249

Query: 237 DEPELVSALLEGRLAGAGLDVYENEPEVPEQM-----LGLNNVVLLPHVGSDTEETSKAM 291
           D   L   L EG LAGA +DV+  EP    +       GL NV+L PH+G  TEE  + +
Sbjct: 250 DLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERI 309

Query: 292 ADLVIENLVAHFSNKPLLTPV 312
              V   LV +      +  V
Sbjct: 310 GTEVTRKLVEYSDVGSTVGAV 330

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  160 bits (407), Expect = 1e-46
 Identities = 48/259 (18%), Positives = 98/259 (37%), Gaps = 27/259 (10%)

Query: 53  TKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLV 112
           T+       +   P +  V + ++G D +DLD   +  +  ++ P      V D  +G +
Sbjct: 47  TEV--SRAALAGSP-VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCL 103

Query: 113 LAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY 172
           LA+                       G+  + ++ G+VG G++G  + + +   G  +  
Sbjct: 104 LAMAEVR-------------------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLV 144

Query: 173 HSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEE----THHIVNRKVIDALGPSGILI 228
                ++      + ++  L +   ++ +   L  +    T H+++   + AL P   L+
Sbjct: 145 CDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLV 204

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
           N  RGA +D   L   L  G      LDV+E EP+  +  L    ++  PH+   + E  
Sbjct: 205 NASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQ-ADPELAARCLIATPHIAGYSLEGK 263

Query: 289 KAMADLVIENLVAHFSNKP 307
                 + +   A      
Sbjct: 264 LRGTAQIYQAYCAWRGIAE 282

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  159 bits (404), Expect = 3e-46
 Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 27/259 (10%)

Query: 53  TKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLV 112
           TK   +  L+   P +  V + + G D +D    K   +  +  P      V +     +
Sbjct: 50  TKV--NESLLSGTP-INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSAL 106

Query: 113 LAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY 172
           L +  R                    G     +++GIVG+G +G+ +  R+EA G     
Sbjct: 107 LMLAER-------------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL 147

Query: 173 HSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEE----THHIVNRKVIDALGPSGILI 228
                 +  +   +  + +L     +L     L ++    T H+ +  +I  L P  ILI
Sbjct: 148 CDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILI 207

Query: 229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS 288
           N  RG  +D   L++ L  G+     LDV+E EP++   +L   ++    H+   T E  
Sbjct: 208 NACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIG-TSHIAGYTLEGK 266

Query: 289 KAMADLVIENLVAHFSNKP 307
                 V E   A    + 
Sbjct: 267 ARGTTQVFEAYSAFIGREQ 285

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 12/97 (12%)

Query: 144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------NYKYYTNIIDLASNC 196
           G +V ++GLGR+G ++A++  A G  +   +R     A          + +       + 
Sbjct: 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDV 214

Query: 197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG 233
            + I           +V   V+  +     +I++   
Sbjct: 215 DVCINTI-----PALVVTANVLAEMPSHTFVIDLASK 246

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 146 SVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSEKSDA------NYKYYTNIIDLASNCQI 198
            + ++G G + T +AK +   G  I   +SR+E+S          +Y T++ ++    ++
Sbjct: 12  PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71

Query: 199 LIVACS 204
            IV+  
Sbjct: 72  YIVSLK 77

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 7/64 (10%), Positives = 16/64 (25%), Gaps = 5/64 (7%)

Query: 146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS-----DANYKYYTNIIDLASNCQILI 200
            +  VG G +     + ++         SRS        +        +        ++ 
Sbjct: 4   VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63

Query: 201 VACS 204
           V   
Sbjct: 64  VIVP 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.94
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.91
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.9
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.83
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.82
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.75
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.71
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.69
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.68
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.67
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.6
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.46
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.44
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.39
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.39
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.38
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.37
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.35
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.33
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.32
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.32
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.31
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.25
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.25
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.25
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.22
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.22
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.22
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.2
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.2
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.19
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.18
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.18
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.13
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.11
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.1
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.1
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.09
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.08
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.08
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.08
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.06
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.05
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.04
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.04
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.01
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.0
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.99
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.96
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.96
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.96
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.95
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.95
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.91
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.43
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.88
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.87
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.86
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.85
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.85
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.85
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.84
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.81
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.78
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.77
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.73
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.73
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.72
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.72
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.72
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.7
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.7
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.69
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.67
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.66
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.65
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.64
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.61
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.59
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.54
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.52
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.5
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.5
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.5
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.5
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.49
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.49
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.49
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.48
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.48
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.48
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.47
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.46
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.46
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.46
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.45
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.45
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.45
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.44
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.43
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.43
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.43
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.43
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.42
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.4
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.39
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.39
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.39
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.38
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.36
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.34
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.33
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.32
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.19
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.16
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.14
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.11
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.1
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.1
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.08
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.05
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.04
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.03
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.02
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.01
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.98
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.98
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.95
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.93
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.91
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.89
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.89
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.87
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.87
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.87
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.84
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.83
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.81
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.81
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.8
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.79
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.79
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.76
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.76
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.76
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.75
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.71
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.7
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.67
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.66
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.63
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.6
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.59
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.58
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.58
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.57
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.55
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.54
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.53
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.53
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.53
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.53
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.51
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.5
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.48
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.46
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.45
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.44
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.42
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.41
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.37
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.37
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.37
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.36
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.35
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.34
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.31
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.29
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.28
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.26
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.25
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.25
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.25
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.24
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.23
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.22
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.22
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.21
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.2
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.2
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.18
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.18
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.18
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.17
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.14
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.12
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.11
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.11
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.11
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.08
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.06
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.05
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	97.05
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.04
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	97.03
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	97.01
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.0
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.99
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.99
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.96
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.96
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.95
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.95
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.95
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.95
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.95
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.94
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.93
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.93
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.93
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.91
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.89
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.86
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.85
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.85
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.83
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.81
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.8
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.8
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.8
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.79
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.79
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.79
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.79
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.77
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.77
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.77
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.76
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.76
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.75
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.75
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.74
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.73
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.72
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	96.71
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.7
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.7
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.7
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.66
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.65
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.64
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.61
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.6
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.59
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.59
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.58
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.53
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.51
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.51
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.51
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.48
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.46
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.46
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.45
4had_A	350	Probable oxidoreductase protein; structural genomi	96.45
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	96.44
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.44
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.43
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.41
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.41
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.4
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.39
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	96.39
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.37
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.36
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.36
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	96.34
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.32
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.31
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.3
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.3
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	96.29
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.29
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.28
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.25
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.25
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.24
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	96.22
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.19
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.19
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.19
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.15
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.14
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.13
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.12
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.12
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.12
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.11
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.11
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.1
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	96.1
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.1
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.09
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.09
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.08
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.07
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.07
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.07
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.05
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.05
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.03
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.02
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.02
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.01
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.0
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.99
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.96
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.96
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.96
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	95.96
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.96
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.95
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.94
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	95.94
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.93
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.92
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.9
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.9
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.87
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.85
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.85
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.83
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.83
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.83
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.8
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.8
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.79
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.78
3on5_A	362	BH1974 protein; structural genomics, joint center	95.76
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.75
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	95.75
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.74
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.74
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.74
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.72
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.71
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.69
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.68
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.64
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	95.64
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.63
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.63
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.62
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.61
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.6
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.59
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.57
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	95.56
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.56
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.53
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.52
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	95.48
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	95.47
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.47
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.47
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.45
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	95.43
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.42
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.4
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.38
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.37
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.37
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	95.37
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.36
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.35
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.35
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.34
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.33
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	95.33
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.33
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.31
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	95.31
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.3
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.29
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.28
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	95.27
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.26
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.26
2csu_A	457	457AA long hypothetical protein; structural genomi	95.25
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.24
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	95.24
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.24
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.23
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	95.21
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	95.19
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.18
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.17
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.16
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.15
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.15
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.12
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.12
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.12
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.12
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.12
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	95.11
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.11
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.11
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.09
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	95.09
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.09
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.09
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.08
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.04
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.03
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.0
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	94.98
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.98
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	94.97
3npg_A	249	Uncharacterized DUF364 family protein; protein wit	94.96
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	94.91
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	94.89
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.89
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.87
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.86
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.86
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	94.85
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.84
3l5o_A	270	Uncharacterized protein from DUF364 family; RARE m	94.82
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.78
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.77
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.76
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	94.75
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.73
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	94.73
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	94.73
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.72
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.72
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	94.71
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.7
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.69
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	94.68
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	94.65
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.62
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	94.62
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	94.59
1lnq_A	336	MTHK channels, potassium channel related protein;	94.59
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.55
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.54
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	94.52
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	94.48
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.48
1spx_A	278	Short-chain reductase family member (5L265); paral	94.47
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	94.47
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	94.45
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	94.44
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	94.41
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	94.37
2h1q_A	270	Hypothetical protein; ZP_00559375.1, structural ge	94.37
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.36
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	94.35
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.34

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.6e-74  Score=540.81  Aligned_cols=312  Identities=39%  Similarity=0.670  Sum_probs=257.4

Q ss_pred             CCceEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361            1 MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK   80 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      |.||+||++++++++..+.|++.|++.........++++.+ .+++|++++++..++++++++++|+||||++.|+|+|+
T Consensus        28 ~~~~~vl~~~~~~~~~~~~L~~~~~v~~~~~~~~~~~~~~~-~~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~  106 (340)
T 4dgs_A           28 NVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAA-LPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGTDK  106 (340)
T ss_dssp             -----CEECSCCCHHHHHTHHHHSCCEETTCGGGHHHHHHH-GGGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSCCTT
T ss_pred             CCCCEEEEECCCCHHHHHHHhcCCcEEEeCCCCCHHHHHHH-hCCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCCccc
Confidence            67899999999999999999999987754322222333444 48999999988889999999999999999999999999


Q ss_pred             CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCC-CcccccccCCCEEEEEcCChhHHHH
Q 021361           81 IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNG-HFELGSKFSGKSVGIVGLGRIGTAI  159 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~-~~~~~~~l~g~~vgiiG~G~iG~~~  159 (313)
                      ||+++++++||.|+|+|++++++||||+++++|++.|++.++++.+++|.|.+. .++.+++|+|++|||||+|.||+.+
T Consensus       107 id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~v  186 (340)
T 4dgs_A          107 VDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRAL  186 (340)
T ss_dssp             BCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHH
T ss_pred             cCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999853 3456889999999999999999999


Q ss_pred             HHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          160 AKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       160 a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      |+++++|||+|++|||+.....+.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++
T Consensus       187 A~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~  266 (340)
T 4dgs_A          187 ASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDED  266 (340)
T ss_dssp             HHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC------
T ss_pred             HHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHH
Confidence            99999999999999998876555555679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          240 ELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       240 al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      +|+++|++|+++||+||||++||++++|||++|||++|||+||+|.++..++...+++|+.+|++|+++.+.||
T Consensus       267 aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          267 ALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             --------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCCTTBC-
T ss_pred             HHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999999888899999999999999999999999999999999999999999999997

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=3.6e-73  Score=532.61  Aligned_cols=313  Identities=32%  Similarity=0.475  Sum_probs=285.9

Q ss_pred             CCceEEEEeCCCChHHHHHHHhcCcEEEecC-CCcchhhHHhccCCceEEEeeCCCCCCHHHhhcC-CCceEEEEcCCCC
Q 021361            1 MEKIGVLMTTPMSNYLEQELAARFTLFKLWT-QSCKNKFFQENSSAIRAVVGDTKCGADAELIDSL-PTLEIVASYSVGL   78 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~   78 (313)
                      |.||+||++++++++..+.|++.|++..... .+...+++.+.++++|+++++...++++++|+++ |+||||++.|+|+
T Consensus        26 ~~~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~G~  105 (345)
T 4g2n_A           26 HPIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGY  105 (345)
T ss_dssp             -CCCEEEESSCCCHHHHHHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESSSCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcCCcc
Confidence            4589999999999999999999997764322 2335666777889999999987789999999997 7999999999999


Q ss_pred             CcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC--cccccccCCCEEEEEcCChhH
Q 021361           79 DKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIG  156 (313)
Q Consensus        79 d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~--~~~~~~l~g~~vgiiG~G~iG  156 (313)
                      |+||+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.+..  ...|++|+|++|||||+|.||
T Consensus       106 D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG  185 (345)
T 4g2n_A          106 DHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIG  185 (345)
T ss_dssp             TTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHH
T ss_pred             cccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhH
Confidence            999999999999999999999999999999999999999999999999999997321  235789999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEECCCCccc---ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          157 TAIAKRVEAFGCPISYHSRSEKSD---ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       157 ~~~a~~l~~~g~~V~~~~~~~~~~---~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      +.+|+++++|||+|++|||+....   .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||
T Consensus       186 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG  265 (345)
T 4g2n_A          186 RAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRG  265 (345)
T ss_dssp             HHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred             HHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCC
Confidence            999999999999999999986432   24444469999999999999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          234 AHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       234 ~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      +++|++||+++|++|+++||+||||++||..++|||++|||++|||+||+|.++.+++...+++|+.+|++|+++.|.|+
T Consensus       266 ~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~~~~V~  345 (345)
T 4g2n_A          266 DLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVPDNLIS  345 (345)
T ss_dssp             GGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             chhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999999999999656799999999999999999999999999999999999999999999885

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=1.1e-70  Score=514.10  Aligned_cols=310  Identities=25%  Similarity=0.447  Sum_probs=283.0

Q ss_pred             ceEEEEeCCCChHHHHHHHhcCcEEEecC-CCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361            3 KIGVLMTTPMSNYLEQELAARFTLFKLWT-QSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      +|+||++++++++..+.|++.++++.... .+...+++.+.++++|+++++...++++++++++|+||||++.|+|+|+|
T Consensus         2 ~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G~d~i   81 (330)
T 4e5n_A            2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNF   81 (330)
T ss_dssp             CCEEEECSCCCHHHHHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSCCTTB
T ss_pred             CCEEEEecCCCHHHHHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCccccc
Confidence            68999999999999999999986654322 23345667777899999999777899999999999999999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCc-CCCcccccccCCCEEEEEcCChhHHHHH
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWK-NGHFELGSKFSGKSVGIVGLGRIGTAIA  160 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~-~~~~~~~~~l~g~~vgiiG~G~iG~~~a  160 (313)
                      |++++.++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|. ......+++|+|++|||||+|.||+.+|
T Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA  161 (330)
T 4e5n_A           82 DVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMA  161 (330)
T ss_dssp             CHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHHH
T ss_pred             CHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997 2223457899999999999999999999


Q ss_pred             HHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          161 KRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       161 ~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                      +++++|||+|++|||+....     .+.. ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++
T Consensus       162 ~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~  240 (330)
T 4e5n_A          162 DRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV  240 (330)
T ss_dssp             HHTTTSCCEEEEECSSCCCHHHHHHHTEE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGG
T ss_pred             HHHHHCCCEEEEECCCCCcHhHHHhcCce-eCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCch
Confidence            99999999999999987321     1232 35899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEccCCCCC-------CCC-CcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361          236 IDEPELVSALLEGRLAGAGLDVYENE-------PEV-PEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP  307 (313)
Q Consensus       236 vd~~al~~al~~g~~~ga~lDV~~~E-------P~~-~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  307 (313)
                      +|+++|+++|++|++.||++|||++|       |++ ++|||++|||++|||+||+|.++.+++...+++|+.+|++|++
T Consensus       241 vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~  320 (330)
T 4e5n_A          241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGER  320 (330)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999       965 4599999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 021361          308 LLTPVI  313 (313)
Q Consensus       308 ~~~~v~  313 (313)
                      +.|.||
T Consensus       321 ~~~~vn  326 (330)
T 4e5n_A          321 PINAVN  326 (330)
T ss_dssp             CTTBSS
T ss_pred             CCCccC
Confidence            999886

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=9.5e-70  Score=518.54  Aligned_cols=311  Identities=24%  Similarity=0.405  Sum_probs=278.6

Q ss_pred             CceEEEEeCCCChHHHHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361            2 EKIGVLMTTPMSNYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK   80 (313)
Q Consensus         2 ~~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      .+++||+++++++...+.|++. |..+.+.......+++.+.++++|++++++..++++++++++|+||+|++.++|+|+
T Consensus        14 ~~~kIl~~~~i~~~~~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~   93 (416)
T 3k5p_A           14 DRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQ   93 (416)
T ss_dssp             GGSCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEECSSCCTT
T ss_pred             CCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEEEECccccCc
Confidence            3688999999999999999864 633443443445566777789999998888889999999999999999999999999


Q ss_pred             CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHH
Q 021361           81 IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIA  160 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a  160 (313)
                      ||+++++++||.|+|+|++++++|||++++++|++.|+++.+++.+++|.|.+.. ..+++++||+|||||+|.||+.+|
T Consensus        94 IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~-~~~~el~gktvGIIGlG~IG~~vA  172 (416)
T 3k5p_A           94 VELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA-IGSREVRGKTLGIVGYGNIGSQVG  172 (416)
T ss_dssp             BCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC-TTCCCSTTCEEEEECCSHHHHHHH
T ss_pred             cCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC-CCCccCCCCEEEEEeeCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998532 347899999999999999999999


Q ss_pred             HHHHhcCCcEEEECCCCcccc-cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          161 KRVEAFGCPISYHSRSEKSDA-NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       161 ~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      +++++|||+|++||++..... +.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++
T Consensus       173 ~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~  252 (416)
T 3k5p_A          173 NLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLE  252 (416)
T ss_dssp             HHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHH
T ss_pred             HHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHH
Confidence            999999999999999865432 2344579999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEccCCCCCCCCC-----cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          240 ELVSALLEGRLAGAGLDVYENEPEVP-----EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       240 al~~al~~g~~~ga~lDV~~~EP~~~-----~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      ||.++|++|++.||++|||++||+++     +|||++|||++|||+||+|.++.+++...+++|+.+|++|+++.+.||
T Consensus       253 aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~~~~~Vn  331 (416)
T 3k5p_A          253 ALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVN  331 (416)
T ss_dssp             HHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCCCTTBSS
T ss_pred             HHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCceee
Confidence            99999999999999999999999764     489999999999999999999999999999999999999999988876

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=8.2e-71  Score=515.59  Aligned_cols=270  Identities=25%  Similarity=0.419  Sum_probs=249.8

Q ss_pred             ccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHH
Q 021361           42 NSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCE  121 (313)
Q Consensus        42 ~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~  121 (313)
                      .++++|+++++...++++++|+++|+||+|+++|+|+||||+++++++||.|+|+|++++++||||+++++|++.|++..
T Consensus        39 ~l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~  118 (334)
T 3kb6_A           39 ELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKR  118 (334)
T ss_dssp             HHHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HhcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhcccc
Confidence            35678999998888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc--ccccCCHHHHHhhCCee
Q 021361          122 FDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN--YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       122 ~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--~~~~~~l~~l~~~aDvv  199 (313)
                      +++.++++.|.......+++|+|+++||||+|+||+.+|+++++|||+|.+||+.......  ...+.++++++++||+|
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDiv  198 (334)
T 3kb6_A          119 IEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVI  198 (334)
T ss_dssp             HHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEE
T ss_pred             ccccccccccccccccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEE
Confidence            9999999998754445688999999999999999999999999999999999997654321  12357899999999999


Q ss_pred             EEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-c------------
Q 021361          200 IVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-E------------  266 (313)
Q Consensus       200 ~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~------------  266 (313)
                      ++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. +            
T Consensus       199 slh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~  278 (334)
T 3kb6_A          199 SLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNL  278 (334)
T ss_dssp             EECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHH
T ss_pred             EEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999632 1            


Q ss_pred             ---ccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021361          267 ---QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTP  311 (313)
Q Consensus       267 ---~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  311 (313)
                         |||++|||++|||+||+|.++++++.+.+++|+.+|++|+++...
T Consensus       279 ~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~  326 (334)
T 3kb6_A          279 KILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIK  326 (334)
T ss_dssp             HHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGG
T ss_pred             cchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence               689999999999999999999999999999999999999987543

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=2.1e-69  Score=503.04  Aligned_cols=304  Identities=22%  Similarity=0.374  Sum_probs=270.3

Q ss_pred             CCceEEEEeCCCChHHHHHH-HhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCC
Q 021361            1 MEKIGVLMTTPMSNYLEQEL-AARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLD   79 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   79 (313)
                      |+|++||++.+..+.+.+.| ++.++.+++.... ..+.+.+.++++|+++++  +.+++++++++|+||||++.|+|+|
T Consensus         3 ~~~mkili~~~~~~~~~~~L~~~~~p~~~~~~~~-~~~~~~~~~~~ad~li~~--~~~~~~~l~~~~~Lk~I~~~~~G~d   79 (324)
T 3hg7_A            3 LSQRTLLLLSQDNAHYERLLKAAHLPHLRILRAD-NQSDAEKLIGEAHILMAE--PARAKPLLAKANKLSWFQSTYAGVD   79 (324)
T ss_dssp             -CCEEEEEESTTHHHHHHHHHHSCCTTEEEEECS-SHHHHHHHGGGCSEEEEC--HHHHGGGGGGCTTCCEEEESSSCCG
T ss_pred             ccccEEEEecCCCHHHHHHHhhccCCCeEEEeCC-ChhHHHHHhCCCEEEEEC--CCCCHHHHhhCCCceEEEECCCCCC
Confidence            56899999999999999999 7666433322211 234455667899999974  3456889999999999999999999


Q ss_pred             cCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHH
Q 021361           80 KIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAI  159 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~  159 (313)
                      ++|++++. +||.|+|+||+++++||||+++++|++.|++..+++.+++|.|.+.   .+++|+|++|||||+|.||+.+
T Consensus        80 ~id~~~~~-~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~---~~~~l~g~tvGIIGlG~IG~~v  155 (324)
T 3hg7_A           80 VLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH---PYQGLKGRTLLILGTGSIGQHI  155 (324)
T ss_dssp             GGSCTTSC-CSSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---CCCCSTTCEEEEECCSHHHHHH
T ss_pred             ccChHHHh-CCEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC---CCcccccceEEEEEECHHHHHH
Confidence            99998885 4999999999999999999999999999999999999999999742   4679999999999999999999


Q ss_pred             HHHHHhcCCcEEEECCCCcccccc---cccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCcc
Q 021361          160 AKRVEAFGCPISYHSRSEKSDANY---KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI  236 (313)
Q Consensus       160 a~~l~~~g~~V~~~~~~~~~~~~~---~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v  236 (313)
                      |++|++|||+|++|||+.+.....   ....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++
T Consensus       156 A~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~v  235 (324)
T 3hg7_A          156 AHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAI  235 (324)
T ss_dssp             HHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGB
T ss_pred             HHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhh
Confidence            999999999999999987543322   22468999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          237 DEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       237 d~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      |+++|+++|++|+++||+||||++||+++ +|||++|||++|||+||+|.+  .++.+.+++|+.+|++|+++.|.||
T Consensus       236 de~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~~~~~V~  311 (324)
T 3hg7_A          236 NEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQPLDGKID  311 (324)
T ss_dssp             CHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             CHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCCCcceEC
Confidence            99999999999999999999999999765 599999999999999999986  5799999999999999999999886

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=1.1e-68  Score=512.61  Aligned_cols=309  Identities=24%  Similarity=0.371  Sum_probs=272.6

Q ss_pred             ceEEEEeCCCChHHHHHHHhc-C-cEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361            3 KIGVLMTTPMSNYLEQELAAR-F-TLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK   80 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      |++||+++++.+...+.|++. | ++.. .......+++.+.++++|++++++.+++++++++++|+||+|++.|+|+||
T Consensus         4 ~~kil~~~~~~~~~~~~l~~~~~~~v~~-~~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~   82 (404)
T 1sc6_A            4 KIKFLLVEGVHQKALESLRAAGYTNIEF-HKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQ   82 (404)
T ss_dssp             SCCEEECSCCCHHHHHHHHHTTCCCEEE-CSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCCTT
T ss_pred             ceEEEEeCCCCHHHHHHHHhCCCcEEEE-cCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCcccCc
Confidence            578999999999888888764 6 4543 332334566667789999998887789999999999999999999999999


Q ss_pred             CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHH
Q 021361           81 IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIA  160 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a  160 (313)
                      ||+++++++||.|+|+|++++++||||++++||++.|+++++++.+++|.|.+.. ..+.+|+||++||||+|.||+.+|
T Consensus        83 iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~-~~~~el~gktlGiIGlG~IG~~vA  161 (404)
T 1sc6_A           83 VDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA-AGSFEARGKKLGIIGYGHIGTQLG  161 (404)
T ss_dssp             BCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC------CCCSTTCEEEEECCSHHHHHHH
T ss_pred             cCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccC-CCccccCCCEEEEEeECHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999997432 347899999999999999999999


Q ss_pred             HHHHhcCCcEEEECCCCccccc-ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          161 KRVEAFGCPISYHSRSEKSDAN-YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       161 ~~l~~~g~~V~~~~~~~~~~~~-~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      +++++|||+|++|||+.....+ .....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++
T Consensus       162 ~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~  241 (404)
T 1sc6_A          162 ILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIP  241 (404)
T ss_dssp             HHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHH
T ss_pred             HHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHH
Confidence            9999999999999997754433 444568999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEccCCCCCCCCC-----cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          240 ELVSALLEGRLAGAGLDVYENEPEVP-----EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       240 al~~al~~g~~~ga~lDV~~~EP~~~-----~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      +|.++|++|+++||++|||++||++.     +|||++|||++|||+|++|.++.+++...+++|+.+|++|+++.+.||
T Consensus       242 aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~~~~vn  320 (404)
T 1sc6_A          242 ALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVN  320 (404)
T ss_dssp             HHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCTTBSS
T ss_pred             HHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCcceec
Confidence            99999999999999999999999753     589999999999999999999999999999999999999999988876

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=4.7e-68  Score=496.72  Aligned_cols=313  Identities=70%  Similarity=1.151  Sum_probs=286.4

Q ss_pred             CCceEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361            1 MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK   80 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      |+||+|++++++.+...+.|++.+++..........+++.+.++++|++++++..++++++++++|+||||++.|+|+|+
T Consensus        21 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~  100 (333)
T 3ba1_A           21 MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDK  100 (333)
T ss_dssp             -CCCEEEECSCCCHHHHHHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSSCCTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcCccccc
Confidence            77899999999999988999888876543222223444666678999999877778999999999999999999999999


Q ss_pred             CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHH
Q 021361           81 IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIA  160 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a  160 (313)
                      ||+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.+.....+++|+|++|||||+|.||+.+|
T Consensus       101 id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~vA  180 (333)
T 3ba1_A          101 VDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVA  180 (333)
T ss_dssp             BCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHHHH
T ss_pred             cCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999974333457899999999999999999999


Q ss_pred             HHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          161 KRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       161 ~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                      ++++++|++|++|||+.+...+.....++++++++||+|++|+|.+++|+++++++.++.||+|++|||++||.++|+++
T Consensus       181 ~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~a  260 (333)
T 3ba1_A          181 ERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE  260 (333)
T ss_dssp             HHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHH
T ss_pred             HHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHH
Confidence            99999999999999988765555556789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          241 LVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       241 l~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      |.++|++|++.||++|||++||.+++|||++|||++|||+|++|.++..++.+.+++|+.+|++|+++.|.||
T Consensus       261 L~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  333 (333)
T 3ba1_A          261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTPVV  333 (333)
T ss_dssp             HHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCSSBCC
T ss_pred             HHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999877899999999999999999999999999999999999999999999987

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=3.8e-69  Score=501.89  Aligned_cols=303  Identities=21%  Similarity=0.314  Sum_probs=269.1

Q ss_pred             eEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHh-hcCCCceEEEEcCCCCCcCC
Q 021361            4 IGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELI-DSLPTLEIVASYSVGLDKID   82 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l-~~~~~Lk~i~~~~~G~d~id   82 (313)
                      ++||++++++++..+.|++.+..++....+.   ...+.++++|+++++. .++ ++++ +++|+||||++.|+|+|++|
T Consensus         2 ~kil~~~~~~~~~~~~L~~~~~~~~~~~~~~---~~~~~~~~ad~l~~~~-~~~-~~~l~~~~~~Lk~I~~~~~G~d~id   76 (324)
T 3evt_A            2 SLVLMAQATKPEQLQQLQTTYPDWTFKDAAA---VTAADYDQIEVMYGNH-PLL-KTILARPTNQLKFVQVISAGVDYLP   76 (324)
T ss_dssp             CEEEECSCCCHHHHHHHHHHCTTCEEEETTS---CCTTTGGGEEEEESCC-THH-HHHHHSTTCCCCEEECSSSCCTTSC
T ss_pred             cEEEEecCCCHHHHHHHHhhCCCeEEecCCc---cChHHhCCcEEEEECC-cCh-HHHHHhhCCCceEEEECCccccccC
Confidence            6899999999999999998764222211111   1123456889998865 346 8999 78999999999999999999


Q ss_pred             hhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHH-HHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHH
Q 021361           83 LDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEF-DEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAK  161 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~-~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~  161 (313)
                      ++++.++||.|+|+||+++++||||+++++|++.|++..+ ++.+++|.|.+..  .+++|+|++|||||+|.||+.+|+
T Consensus        77 ~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~--~~~~l~gktvGIiGlG~IG~~vA~  154 (324)
T 3evt_A           77 LKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM--TTSTLTGQQLLIYGTGQIGQSLAA  154 (324)
T ss_dssp             HHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS--CCCCSTTCEEEEECCSHHHHHHHH
T ss_pred             HHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC--CCccccCCeEEEECcCHHHHHHHH
Confidence            9999999999999999999999999999999999999999 9999999997532  478999999999999999999999


Q ss_pred             HHHhcCCcEEEECCCCcccccc---cccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361          162 RVEAFGCPISYHSRSEKSDANY---KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       162 ~l~~~g~~V~~~~~~~~~~~~~---~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      +|++|||+|++|||+.+.....   ....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+
T Consensus       155 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~  234 (324)
T 3evt_A          155 KASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT  234 (324)
T ss_dssp             HHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCH
T ss_pred             HHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhH
Confidence            9999999999999987654322   1246899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC-CCCCCCC
Q 021361          239 PELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNK-PLLTPVI  313 (313)
Q Consensus       239 ~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~-~~~~~v~  313 (313)
                      ++|+++|++|++.||++|||++||+++ +|||++|||++|||+||+|.++.+++.+.+++|+.+|++|+ ++.|.||
T Consensus       235 ~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~~~n~V~  311 (324)
T 3evt_A          235 TALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQVD  311 (324)
T ss_dssp             HHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSCBCC
T ss_pred             HHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCCCCceEC
Confidence            999999999999999999999999775 59999999999999999999999999999999999999765 6788875

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=2e-68  Score=500.04  Aligned_cols=308  Identities=21%  Similarity=0.295  Sum_probs=265.6

Q ss_pred             eEEEEeCCC--ChHHHHHHHh--cCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHH-HhhcCC--CceEEEEcCC
Q 021361            4 IGVLMTTPM--SNYLEQELAA--RFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE-LIDSLP--TLEIVASYSV   76 (313)
Q Consensus         4 ~~vl~~~~~--~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-~l~~~~--~Lk~i~~~~~   76 (313)
                      +||++....  .....+.+.+  .+++.. ..... .+++.+.++++|+++++...+++++ +|+++|  +||+|++.|+
T Consensus         2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   79 (343)
T 2yq5_A            2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKT-TDQAL-TSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIV   79 (343)
T ss_dssp             CEEEEESCCGGGHHHHHHHHHHHTCEEEE-ESSCC-STTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSS
T ss_pred             ceEEEEecCcccHHHHHHHHHhCCeEEEE-CCCCC-CHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECce
Confidence            678887632  2334445433  244433 22222 2344567899999999877899999 999986  6999999999


Q ss_pred             CCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHH-cCCCcCCCcccccccCCCEEEEEcCChh
Q 021361           77 GLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVK-SGKWKNGHFELGSKFSGKSVGIVGLGRI  155 (313)
Q Consensus        77 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~-~~~w~~~~~~~~~~l~g~~vgiiG~G~i  155 (313)
                      |+|+||+++++++||.|+|+|++++++||||+++++|++.|++..+++.++ +|.|.......+++|+|++|||||+|.|
T Consensus        80 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~I  159 (343)
T 2yq5_A           80 GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHI  159 (343)
T ss_dssp             CCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHH
T ss_pred             eecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHH
Confidence            999999999999999999999999999999999999999999999999999 8976542334688999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEECCCCccccc-ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          156 GTAIAKRVEAFGCPISYHSRSEKSDAN-YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       156 G~~~a~~l~~~g~~V~~~~~~~~~~~~-~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      |+.+|+++++|||+|++|||+...... .....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+
T Consensus       160 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~  239 (343)
T 2yq5_A          160 GSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGE  239 (343)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGG
T ss_pred             HHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCCh
Confidence            999999999999999999998764321 1224589999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEccCCCCCCC--CC------------cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 021361          235 HIDEPELVSALLEGRLAGAGLDVYENEPE--VP------------EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV  300 (313)
Q Consensus       235 ~vd~~al~~al~~g~~~ga~lDV~~~EP~--~~------------~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~  300 (313)
                      ++|+++|+++|++|++.||+||||++||+  +.            +|||++|||++|||+|++|.++++++.+.+++|+.
T Consensus       240 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni~  319 (343)
T 2yq5_A          240 LVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQL  319 (343)
T ss_dssp             GBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999993  33            27999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCC
Q 021361          301 AHFSNKPLLTPVI  313 (313)
Q Consensus       301 ~~~~g~~~~~~v~  313 (313)
                      +|++|+++.|.||
T Consensus       320 ~~l~g~~~~~~v~  332 (343)
T 2yq5_A          320 TIAKGGRPRSIVN  332 (343)
T ss_dssp             HHHTTCCCTTBC-
T ss_pred             HHHcCCCCCceEC
Confidence            9999999999886

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=4.1e-68  Score=500.10  Aligned_cols=309  Identities=23%  Similarity=0.377  Sum_probs=271.9

Q ss_pred             CCceEEEEeCCCChH-----HHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEe-eCCCCCCHHHhhcCCCceEEEEc
Q 021361            1 MEKIGVLMTTPMSNY-----LEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVG-DTKCGADAELIDSLPTLEIVASY   74 (313)
Q Consensus         1 m~~~~vl~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~-~~~~~~~~~~l~~~~~Lk~i~~~   74 (313)
                      |+ ++|++++.+...     .++.++ .+++..+.......+++.+.++++|++++ +...++++++++++|+||+|++.
T Consensus         1 ms-mki~~~d~~~~~~~~~~~~~~l~-~~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~   78 (352)
T 3gg9_A            1 MS-LKIAVLDDYQDAVRKLDCFSLLQ-DHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQT   78 (352)
T ss_dssp             -C-CEEEECCCTTCCGGGSGGGGGGT-TSEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEES
T ss_pred             Cc-eEEEEEcCccccchhhhhhhhhc-CceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEe
Confidence            77 789998876532     223443 36554432222245667778899999998 46689999999999999999999


Q ss_pred             CCCC----CcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC---------cccccc
Q 021361           75 SVGL----DKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH---------FELGSK  141 (313)
Q Consensus        75 ~~G~----d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~---------~~~~~~  141 (313)
                      |+|+    |+||+++++++||.|+|+||+ +++||||+++++|++.|++..+++.+++|.|.+..         ...+++
T Consensus        79 g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~  157 (352)
T 3gg9_A           79 GRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRV  157 (352)
T ss_dssp             SCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCC
T ss_pred             CcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCcc
Confidence            9999    999999999999999999999 99999999999999999999999999999997532         124789


Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      |+|++|||||+|.||+.+|+++++|||+|++|||+....    .++....++++++++||+|++|+|++++|+++++++.
T Consensus       158 l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~  237 (352)
T 3gg9_A          158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVAD  237 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHH
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHH
Confidence            999999999999999999999999999999999986422    3444456999999999999999999999999999999


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVI  296 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~  296 (313)
                      |+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||++. +|||++|||++|||+||+|.++.+++...++
T Consensus       238 l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~  317 (352)
T 3gg9_A          238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAF  317 (352)
T ss_dssp             HTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHH
T ss_pred             HhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999864 5999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCC
Q 021361          297 ENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       297 ~ni~~~~~g~~~~~~v~  313 (313)
                      +|+.+|++|+|+ |.||
T Consensus       318 ~ni~~~~~G~p~-~~Vn  333 (352)
T 3gg9_A          318 QNILDILQGNVD-SVAN  333 (352)
T ss_dssp             HHHHHHHTTCCT-TBSC
T ss_pred             HHHHHHHcCCCC-cccC
Confidence            999999999875 7765

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=5.8e-68  Score=500.09  Aligned_cols=296  Identities=19%  Similarity=0.321  Sum_probs=258.4

Q ss_pred             ChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEc-CCCCCcCChhhhhcCCc
Q 021361           13 SNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASY-SVGLDKIDLDKCKDKAV   91 (313)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~-~~G~d~id~~~~~~~gI   91 (313)
                      .++.++.|++.|+++.. ......+++.+...++++++.  .+++++++|+++|+||+|++. |+|+|+||+++++++||
T Consensus        45 ~~~~~~~L~~~~~v~~~-~~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI  121 (365)
T 4hy3_A           45 SDEARAALHSKYEIVEA-DPENIAGLGDDILGRARYIIG--QPPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRGI  121 (365)
T ss_dssp             CHHHHHHHHHHSEEEEC-CGGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSCC
T ss_pred             CHHHHHHHhCCcEEEEC-CCCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCCe
Confidence            45578889988987742 222223333334456777774  468999999999999999975 89999999999999999


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCC--CcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCc
Q 021361           92 RVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGK--WKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP  169 (313)
Q Consensus        92 ~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~--w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~  169 (313)
                      .|+|+|++++++||||+++++|++.|++..+++.+++|.  |.......+++|+||+|||||+|.||+.+|+++++|||+
T Consensus       122 ~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~  201 (365)
T 4hy3_A          122 HVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRAR  201 (365)
T ss_dssp             EEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCE
T ss_pred             EEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCE
Confidence            999999999999999999999999999999999999998  543222357899999999999999999999999999999


Q ss_pred             EEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHH
Q 021361          170 ISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSAL  245 (313)
Q Consensus       170 V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al  245 (313)
                      |++|||+....    .++. ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|++||+++|
T Consensus       202 V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  280 (365)
T 4hy3_A          202 IRVFDPWLPRSMLEENGVE-PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAV  280 (365)
T ss_dssp             EEEECSSSCHHHHHHTTCE-ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHH
T ss_pred             EEEECCCCCHHHHhhcCee-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHH
Confidence            99999986432    2332 468999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          246 LEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       246 ~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      ++|+|. |+||||++||+++ +|||++|||++|||+||+|.+++.++...+++||.+|++|+|+.+.||
T Consensus       281 ~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~~~~~vn  348 (365)
T 4hy3_A          281 SSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLPPMRCKR  348 (365)
T ss_dssp             HTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCCCCSSEE
T ss_pred             HcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence            999998 9999999999765 599999999999999999999999999999999999999999988764

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=2.9e-68  Score=500.71  Aligned_cols=294  Identities=21%  Similarity=0.356  Sum_probs=262.9

Q ss_pred             hHHHHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeCC--CCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCC
Q 021361           14 NYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDTK--CGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKA   90 (313)
Q Consensus        14 ~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~--~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~g   90 (313)
                      ....+.|++. ++++.........+++.+.++++|+++++..  .++++++++++|+||+|++.|+|+||||+++++++|
T Consensus        30 l~~~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~g  109 (351)
T 3jtm_A           30 LGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAG  109 (351)
T ss_dssp             GGCHHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTT
T ss_pred             HHHHHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcC
Confidence            3456777765 6665443332244567778899999998642  468999999999999999999999999999999999


Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCc-ccccccCCCEEEEEcCChhHHHHHHHHHhcCCc
Q 021361           91 VRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHF-ELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP  169 (313)
Q Consensus        91 I~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~-~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~  169 (313)
                      |.|+|+|++++.+||||+++++|++.|++..+++.+++|.|..... ..+.+|+|++|||||+|.||+.+|++|++|||+
T Consensus       110 I~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~  189 (351)
T 3jtm_A          110 LTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN  189 (351)
T ss_dssp             CEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCE
T ss_pred             eeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCE
Confidence            9999999999999999999999999999999999999999974221 236789999999999999999999999999999


Q ss_pred             EEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHH
Q 021361          170 ISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSA  244 (313)
Q Consensus       170 V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~a  244 (313)
                      |++|||++...     .++....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++
T Consensus       190 V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~a  269 (351)
T 3jtm_A          190 LLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDA  269 (351)
T ss_dssp             EEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHH
T ss_pred             EEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHH
Confidence            99999986432     2344456899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361          245 LLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP  307 (313)
Q Consensus       245 l~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  307 (313)
                      |++|++.||++|||++||++. +|||++|||++|||+||+|.++..++...+.+|+++|++|++
T Consensus       270 L~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~  333 (351)
T 3jtm_A          270 VESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGED  333 (351)
T ss_dssp             HHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999765 599999999999999999999999999999999999999996

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-66  Score=485.33  Aligned_cols=306  Identities=23%  Similarity=0.404  Sum_probs=268.7

Q ss_pred             CCceEEEEeCCCChHHHHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCC
Q 021361            1 MEKIGVLMTTPMSNYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLD   79 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   79 (313)
                      |++++|++++++.+...+.+++. +++.. .. ....+++.+.++++|+++++...++++++++++|+||||++.|+|+|
T Consensus        24 ~~~~~vli~~~~~~~~~~~l~~~~~~v~~-~~-~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d  101 (335)
T 2g76_A           24 ANLRKVLISDSLDPCCRKILQDGGLQVVE-KQ-NLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVD  101 (335)
T ss_dssp             --CCEEEECSCCCHHHHHHHHHHTCEEEE-CC-SCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSSSCT
T ss_pred             ccceEEEEcCCCCHHHHHHHHhCCCEEEE-CC-CCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCCCcc
Confidence            34568999999988888888765 44433 22 22345566677899999998777899999999999999999999999


Q ss_pred             cCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHH
Q 021361           80 KIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAI  159 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~  159 (313)
                      ++|+++++++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|.+.. ..+.+|+|++|||||+|.||+.+
T Consensus       102 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~l~g~tvgIIGlG~IG~~v  180 (335)
T 2g76_A          102 NVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKK-FMGTELNGKTLGILGLGRIGREV  180 (335)
T ss_dssp             TBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGG-GCBCCCTTCEEEEECCSHHHHHH
T ss_pred             hhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccC-CCCcCCCcCEEEEEeECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997422 24789999999999999999999


Q ss_pred             HHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          160 AKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       160 a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                      |+++++||++|++|||+....    .+.. ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++
T Consensus       181 A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~v  259 (335)
T 2g76_A          181 ATRMQSFGMKTIGYDPIISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGI  259 (335)
T ss_dssp             HHHHHTTTCEEEEECSSSCHHHHHHTTCE-ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTS
T ss_pred             HHHHHHCCCEEEEECCCcchhhhhhcCce-eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccc
Confidence            999999999999999986542    2232 35899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021361          236 IDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLT  310 (313)
Q Consensus       236 vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  310 (313)
                      +|+++|.++|++|++.||+||||++||..++|||++||+++|||+|++|.++..++.+.+++|+.+|++|+++.|
T Consensus       260 vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~n  334 (335)
T 2g76_A          260 VDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTG  334 (335)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC-------
T ss_pred             cCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999999666799999999999999999999999999999999999999999876

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=3.7e-66  Score=484.22  Aligned_cols=309  Identities=22%  Similarity=0.331  Sum_probs=271.2

Q ss_pred             EEEEeC--CCChHHHHHHHhcCcE-EEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCC--ceEEEEcCCCCC
Q 021361            5 GVLMTT--PMSNYLEQELAARFTL-FKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPT--LEIVASYSVGLD   79 (313)
Q Consensus         5 ~vl~~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~d   79 (313)
                      +|++.+  +......+.+.+.+.+ +.........+++.+.++++|+++++...++++++++++|+  ||||++.|+|+|
T Consensus         2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d   81 (331)
T 1xdw_A            2 KVLCYGVRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTD   81 (331)
T ss_dssp             EEEECSCCTTTHHHHHHHGGGTCCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSSCCT
T ss_pred             EEEEEecCccCHHHHHHHHHhcCeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEcccccc
Confidence            678854  5556667777665542 22223222335566678899999998778899999999998  999999999999


Q ss_pred             cCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHH
Q 021361           80 KIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAI  159 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~  159 (313)
                      +||+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.......+++++|++|||||+|.||+.+
T Consensus        82 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~  161 (331)
T 1xdw_A           82 HIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVA  161 (331)
T ss_dssp             TBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCSHHHHHH
T ss_pred             ccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999986312235789999999999999999999


Q ss_pred             HHHHHhcCCcEEEECCCCcccc-cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361          160 AKRVEAFGCPISYHSRSEKSDA-NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       160 a~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      |+++++|||+|++|||+..... ......++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+
T Consensus       162 A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~  241 (331)
T 1xdw_A          162 AQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDT  241 (331)
T ss_dssp             HHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCH
T ss_pred             HHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccH
Confidence            9999999999999999875431 111245899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCceEEEccCCCCCCC--C--------Cc----ccCCC-CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021361          239 PELVSALLEGRLAGAGLDVYENEPE--V--------PE----QMLGL-NNVVLLPHVGSDTEETSKAMADLVIENLVAHF  303 (313)
Q Consensus       239 ~al~~al~~g~~~ga~lDV~~~EP~--~--------~~----~l~~~-pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~  303 (313)
                      ++|.++|++|+++||+||||++||+  +        ++    |||++ |||++|||+||+|.++..++.+.+++|+.+|+
T Consensus       242 ~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~  321 (331)
T 1xdw_A          242 EAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLA  321 (331)
T ss_dssp             HHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999994  1        12    69999 99999999999999999999999999999999


Q ss_pred             cCCCCCCCCC
Q 021361          304 SNKPLLTPVI  313 (313)
Q Consensus       304 ~g~~~~~~v~  313 (313)
                      +|+++.|.||
T Consensus       322 ~g~~~~~~v~  331 (331)
T 1xdw_A          322 ETGDCPNKIK  331 (331)
T ss_dssp             HHSCCTTBCC
T ss_pred             cCCCCCCCCC
Confidence            9999999886

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.7e-66  Score=486.80  Aligned_cols=308  Identities=23%  Similarity=0.357  Sum_probs=267.5

Q ss_pred             EEEEeC--CCChHHHHHHHhcCc-EEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCC--ceEEEEcCCCCC
Q 021361            5 GVLMTT--PMSNYLEQELAARFT-LFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPT--LEIVASYSVGLD   79 (313)
Q Consensus         5 ~vl~~~--~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~d   79 (313)
                      +|++..  +......+.+.+.+. .+...... ..+++.+.++++|+++++...++++++++++|+  ||||++.|+|+|
T Consensus         2 kil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d   80 (333)
T 1dxy_A            2 KIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF-LDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD   80 (333)
T ss_dssp             EEEECSCCTTTHHHHHHHHHHHCCEEEECSSC-CCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred             EEEEEeccccCHHHHHHHHHhCCeEEEEcCCC-ChHHHHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcccC
Confidence            677754  445556667755433 12222222 223455567899999998778899999999988  999999999999


Q ss_pred             cCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHH
Q 021361           80 KIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAI  159 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~  159 (313)
                      +||+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.......+++|+|++|||||+|.||+.+
T Consensus        81 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~  160 (333)
T 1dxy_A           81 NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA  160 (333)
T ss_dssp             TBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHH
T ss_pred             ccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999985211235789999999999999999999


Q ss_pred             HHHHHhcCCcEEEECCCCcccc-cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361          160 AKRVEAFGCPISYHSRSEKSDA-NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       160 a~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      |+++++|||+|++|||+..... ......++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+
T Consensus       161 A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~  240 (333)
T 1dxy_A          161 IKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT  240 (333)
T ss_dssp             HHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCH
T ss_pred             HHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCH
Confidence            9999999999999999875431 111245899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCceEEEccCCCCCCC----------CC----cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 021361          239 PELVSALLEGRLAGAGLDVYENEPE----------VP----EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFS  304 (313)
Q Consensus       239 ~al~~al~~g~~~ga~lDV~~~EP~----------~~----~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~  304 (313)
                      ++|.++|++|+++||+||||++||+          .+    +|||++|||++|||+||+|.++..++.+.+++|+.+|++
T Consensus       241 ~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~~~  320 (333)
T 1dxy_A          241 QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLT  320 (333)
T ss_dssp             HHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999993          12    479999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q 021361          305 NKPLLTPVI  313 (313)
Q Consensus       305 g~~~~~~v~  313 (313)
                      |+++.|.||
T Consensus       321 g~~~~~~v~  329 (333)
T 1dxy_A          321 KGETSTEVT  329 (333)
T ss_dssp             HSCCTTEEC
T ss_pred             CCCCCceeC
Confidence            999988775

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=5.4e-66  Score=483.52  Aligned_cols=307  Identities=20%  Similarity=0.280  Sum_probs=268.7

Q ss_pred             eEEEEeC--CCChHHHHHHHhcC---cEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCC--ceEEEEcCC
Q 021361            4 IGVLMTT--PMSNYLEQELAARF---TLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPT--LEIVASYSV   76 (313)
Q Consensus         4 ~~vl~~~--~~~~~~~~~l~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~   76 (313)
                      ++|++..  +......+.+++.+   ++. ..... ..+++.+.++++|+++++...++++++++++|+  ||||++.|+
T Consensus         2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~-~~~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   79 (333)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVE-YTDKL-LTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV   79 (333)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEE-ECSSC-CCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             cEEEEEecCccCHHHHHHHHhhCCCcEEE-ECCCC-CcHHHHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCc
Confidence            5788764  33445667777655   333 22222 223455567899999998777899999999988  999999999


Q ss_pred             CCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhH
Q 021361           77 GLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIG  156 (313)
Q Consensus        77 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG  156 (313)
                      |+|+||+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.+. ...+++++|++|||||+|.||
T Consensus        80 G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~-~~~~~~l~g~~vgIiG~G~IG  158 (333)
T 1j4a_A           80 GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA-PTIGREVRDQVVGVVGTGHIG  158 (333)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCT-TCCBCCGGGSEEEEECCSHHH
T ss_pred             ccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccC-CcccccCCCCEEEEEccCHHH
Confidence            9999999999999999999999999999999999999999999999999999998632 235789999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEECCCCcccc--cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          157 TAIAKRVEAFGCPISYHSRSEKSDA--NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       157 ~~~a~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      +.+|++++++|++|++|||+.+...  ......++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+
T Consensus       159 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~  238 (333)
T 1j4a_A          159 QVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGP  238 (333)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGG
T ss_pred             HHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCc
Confidence            9999999999999999999876421  12223489999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEccCCCCCCC--CC--------c----ccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 021361          235 HIDEPELVSALLEGRLAGAGLDVYENEPE--VP--------E----QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLV  300 (313)
Q Consensus       235 ~vd~~al~~al~~g~~~ga~lDV~~~EP~--~~--------~----~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~  300 (313)
                      ++|+++|.++|++|+++||+||||++||+  ++        +    |||++|||++|||+||+|.++..++.+.+++|+.
T Consensus       239 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~  318 (333)
T 1j4a_A          239 LVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNL  318 (333)
T ss_dssp             GBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999993  22        2    5999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCC
Q 021361          301 AHFSNKPLLTPVI  313 (313)
Q Consensus       301 ~~~~g~~~~~~v~  313 (313)
                      +|++|+++.|.||
T Consensus       319 ~~~~g~~~~~~v~  331 (333)
T 1j4a_A          319 ELVEGKEAETPVK  331 (333)
T ss_dssp             HHHTTCCCSSBCC
T ss_pred             HHHcCCCCCcccc
Confidence            9999999999886

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=3.4e-65  Score=473.78  Aligned_cols=306  Identities=35%  Similarity=0.569  Sum_probs=275.7

Q ss_pred             eEEEEeCCCChHHHHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCC
Q 021361            4 IGVLMTTPMSNYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKID   82 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   82 (313)
                      |+||+++++.++..+.|++. +++..........+++.+.++++|+++++...++++++++++|+||||++.|+|+|++|
T Consensus         1 ~~vl~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   80 (311)
T 2cuk_A            1 MRVLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVD   80 (311)
T ss_dssp             CEEEESSCCSSSTTHHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCTTBC
T ss_pred             CEEEEeCCCCHHHHHHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCccccC
Confidence            57899888888878888877 76543222222445666678899999987767899999999999999999999999999


Q ss_pred             hhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCC--CcccccccCCCEEEEEcCChhHHHHH
Q 021361           83 LDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNG--HFELGSKFSGKSVGIVGLGRIGTAIA  160 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~vgiiG~G~iG~~~a  160 (313)
                      +++++++||.|+|+|++++++||||++++||++.|++..+++.+++|.|...  ....+++++|++|||||+|.||+.+|
T Consensus        81 ~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A  160 (311)
T 2cuk_A           81 LEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVA  160 (311)
T ss_dssp             HHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHH
T ss_pred             HHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999621  11247899999999999999999999


Q ss_pred             HHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          161 KRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       161 ~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                      ++++++|++|++|||+.+... . ...++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||+++|+++
T Consensus       161 ~~l~~~G~~V~~~d~~~~~~~-~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~a  238 (311)
T 2cuk_A          161 KRALAFGMRVVYHARTPKPLP-Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEA  238 (311)
T ss_dssp             HHHHHTTCEEEEECSSCCSSS-S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHH
T ss_pred             HHHHHCCCEEEEECCCCcccc-c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHH
Confidence            999999999999999876543 2 35689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCceEEEccCCCCCCCC-CcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021361          241 LVSALLEGRLAGAGLDVYENEPEV-PEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV  312 (313)
Q Consensus       241 l~~al~~g~~~ga~lDV~~~EP~~-~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v  312 (313)
                      |.++|+ |++.||++|||++||++ ++|||++||+++|||++++|.++..++.+.+++|+.+|++|+++.|.|
T Consensus       239 L~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  310 (311)
T 2cuk_A          239 LVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPV  310 (311)
T ss_dssp             HHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBC
T ss_pred             HHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence            999999 99999999999999965 469999999999999999999999999999999999999999998876

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=8.3e-66  Score=477.90  Aligned_cols=296  Identities=23%  Similarity=0.343  Sum_probs=259.0

Q ss_pred             ceEEEEeCCCC--hHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361            3 KIGVLMTTPMS--NYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK   80 (313)
Q Consensus         3 ~~~vl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      +++|++..+..  +.+.+.|++.++.+++...+.  .    ..+++|+++++.   .+++++++ |+||||++.|+|+|+
T Consensus         3 ~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~~~--~----~~~~ad~~i~~~---~~~~~l~~-~~Lk~I~~~~aG~d~   72 (315)
T 3pp8_A            3 AMEIIFYHPTFNAAWWVNALEKALPHARVREWKV--G----DNNPADYALVWQ---PPVEMLAG-RRLKAVFVLGAGVDA   72 (315)
T ss_dssp             CEEEEEECSSSCHHHHHHHHHHHSTTEEEEECCT--T----CCSCCSEEEESS---CCHHHHTT-CCCSEEEESSSCCHH
T ss_pred             ceEEEEEcCCCchHHHHHHHHHHCCCCEEEecCC--C----CccCcEEEEECC---CCHHHhCC-CCceEEEECCEeccc
Confidence            37888877654  456788888885433321111  1    346899999864   37999999 999999999999999


Q ss_pred             C-C-hhh---hhcCCcEEEeCCCCC-cHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCCh
Q 021361           81 I-D-LDK---CKDKAVRVTNTPDVL-TDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGR  154 (313)
Q Consensus        81 i-d-~~~---~~~~gI~v~n~~~~~-~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~  154 (313)
                      + | +++   +.++||.|+|+++.. +.+||||+++++|++.|++..+++.+++|.|...   .+++++|++|||||+|.
T Consensus        73 i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~---~~~~l~g~tvGIiG~G~  149 (315)
T 3pp8_A           73 ILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL---PEYTREEFSVGIMGAGV  149 (315)
T ss_dssp             HHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---CCCCSTTCCEEEECCSH
T ss_pred             ccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC---CCCCcCCCEEEEEeeCH
Confidence            9 7 876   788999999998764 7999999999999999999999999999999742   46899999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEECCCCcccccccc---cCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          155 IGTAIAKRVEAFGCPISYHSRSEKSDANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       155 iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~---~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ||+.+|+++++|||+|++|||+++...+...   ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|
T Consensus       150 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  229 (315)
T 3pp8_A          150 LGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLA  229 (315)
T ss_dssp             HHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECS
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECC
Confidence            9999999999999999999998765443322   2579999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021361          232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLT  310 (313)
Q Consensus       232 rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  310 (313)
                      ||+++|+++|+++|++|++.||+||||++||++. +|||++|||++|||+||+|.+  .++.+.+++|+.+|++|+++.|
T Consensus       230 RG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~~~~~  307 (315)
T 3pp8_A          230 RGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGEPVTG  307 (315)
T ss_dssp             CGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTCCCCC
T ss_pred             CChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999999999999999999865 599999999999999999986  5799999999999999999999


Q ss_pred             CCC
Q 021361          311 PVI  313 (313)
Q Consensus       311 ~v~  313 (313)
                      .||
T Consensus       308 ~V~  310 (315)
T 3pp8_A          308 QVD  310 (315)
T ss_dssp             BCC
T ss_pred             eEC
Confidence            886

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.7e-64  Score=471.00  Aligned_cols=306  Identities=28%  Similarity=0.469  Sum_probs=274.1

Q ss_pred             eEEEEeCCCChHHHHHHHhcCcEEEecCC-CcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCC-ceEEEEcCCCCCcC
Q 021361            4 IGVLMTTPMSNYLEQELAARFTLFKLWTQ-SCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPT-LEIVASYSVGLDKI   81 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~i   81 (313)
                      ++|+++.++.++..+.|++.+++...... ....+++.+.++++|+++++...++++++++++|+ ||||++.|+|+|+|
T Consensus         2 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~i   81 (320)
T 1gdh_A            2 KKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHI   81 (320)
T ss_dssp             CEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTTB
T ss_pred             cEEEEcCCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCcccccc
Confidence            67999998888888889887765432221 23445666678899999998777899999999999 99999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCC--CcccccccCCCEEEEEcCChhHHHH
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNG--HFELGSKFSGKSVGIVGLGRIGTAI  159 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~vgiiG~G~iG~~~  159 (313)
                      |+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|...  ....+.+++|++|||||+|.||+.+
T Consensus        82 d~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~  161 (320)
T 1gdh_A           82 DLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQAL  161 (320)
T ss_dssp             CHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHH
T ss_pred             cHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999621  1234789999999999999999999


Q ss_pred             HHHHHhcCCcEEEECC-CCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          160 AKRVEAFGCPISYHSR-SEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       160 a~~l~~~g~~V~~~~~-~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      |++++++|++|++||| +.+..    .+.....++++++++||+|++|+|.+++|+++++++.|+.||+|++|||+|||+
T Consensus       162 A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~  241 (320)
T 1gdh_A          162 AKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD  241 (320)
T ss_dssp             HHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGG
T ss_pred             HHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCc
Confidence            9999999999999999 76542    233334489999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021361          235 HIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLT  310 (313)
Q Consensus       235 ~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  310 (313)
                      ++|+++|.++|++|++.||++|||++||..++|||++||+++|||++++|.++..++...+ +|+.+|++|+++.+
T Consensus       242 ~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~~~  316 (320)
T 1gdh_A          242 LVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGADMS  316 (320)
T ss_dssp             GBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSCCT
T ss_pred             ccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCCcc
Confidence            9999999999999999999999999999555799999999999999999999999999999 99999999998865

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.2e-64  Score=469.46  Aligned_cols=301  Identities=32%  Similarity=0.529  Sum_probs=268.6

Q ss_pred             CCceEEEEeCCCChHHHHHHHh-cCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCC
Q 021361            1 MEKIGVLMTTPMSNYLEQELAA-RFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLD   79 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   79 (313)
                      |.+++|++++++.++..+.|++ .+++..  ......+++.+.++++|+++++..+++++++++++|+||||++.|+|+|
T Consensus         1 ~~~~~il~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   78 (307)
T 1wwk_A            1 MKRMKVLVAAPLHEKAIQVLKDAGLEVIY--EEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLD   78 (307)
T ss_dssp             ---CEEEECSCCCHHHHHHHHHTTCEEEE--CSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCCT
T ss_pred             CCceEEEEeCCCCHHHHHHHHhCCeEEEe--CCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence            5678999999988888888876 344432  2222345566678899999987766799999999999999999999999


Q ss_pred             cCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHH
Q 021361           80 KIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAI  159 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~  159 (313)
                      ++|+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.+. ...+++|+|++|||||+|.||+.+
T Consensus        79 ~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~-~~~~~~l~g~~vgIiG~G~IG~~~  157 (307)
T 1wwk_A           79 NIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKK-EAMGIELEGKTIGIIGFGRIGYQV  157 (307)
T ss_dssp             TBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTT-TCCBCCCTTCEEEEECCSHHHHHH
T ss_pred             ccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc-CcCCcccCCceEEEEccCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999742 234789999999999999999999


Q ss_pred             HHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          160 AKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       160 a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                      |++++++|++|++|||+....    .+.. ..++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||++
T Consensus       158 A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~  236 (307)
T 1wwk_A          158 AKIANALGMNILLYDPYPNEERAKEVNGK-FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPV  236 (307)
T ss_dssp             HHHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGG
T ss_pred             HHHHHHCCCEEEEECCCCChhhHhhcCcc-ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcc
Confidence            999999999999999987642    2233 34899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEccCCCCCCCC-CcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 021361          236 IDEPELVSALLEGRLAGAGLDVYENEPEV-PEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSN  305 (313)
Q Consensus       236 vd~~al~~al~~g~~~ga~lDV~~~EP~~-~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g  305 (313)
                      +|+++|.++|++|++.||++|||++||++ ++|||++||+++|||++++|.++..++.+.+++|+.+|++|
T Consensus       237 vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          237 VDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG  307 (307)
T ss_dssp             BCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999974 46999999999999999999999999999999999999986

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.1e-64  Score=470.78  Aligned_cols=301  Identities=23%  Similarity=0.420  Sum_probs=272.9

Q ss_pred             ceEEEEeCCCChHHHHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361            3 KIGVLMTTPMSNYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      +++|++++++.+...+.|++. +++. . ......+++.+.++++|++++++..++++++++++|+||||++.|+|+|++
T Consensus         5 ~mkil~~~~~~~~~~~~l~~~~~~v~-~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   82 (313)
T 2ekl_A            5 TVKALITDPIDEILIKTLREKGIQVD-Y-MPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNI   82 (313)
T ss_dssp             CCEEEECSCCCHHHHHHHHHTTCEEE-E-CTTCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCTTB
T ss_pred             ceEEEEECCCCHHHHHHHHhCCcEEE-e-CCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCCcc
Confidence            578999999888888888775 4443 2 222234556667789999998766789999999999999999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHH
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAK  161 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~  161 (313)
                      |++++.++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|..   ..+++++|++|||||+|.||+.+|+
T Consensus        83 d~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~~~~~l~g~~vgIIG~G~IG~~~A~  159 (313)
T 2ekl_A           83 DTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK---IEGLELAGKTIGIVGFGRIGTKVGI  159 (313)
T ss_dssp             CHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC---CCCCCCTTCEEEEESCSHHHHHHHH
T ss_pred             CHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC---CCCCCCCCCEEEEEeeCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999962   3478999999999999999999999


Q ss_pred             HHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccC
Q 021361          162 RVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID  237 (313)
Q Consensus       162 ~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd  237 (313)
                      +++++|++|++|||+.+..    .+.. ..++++++++||+|++|+|.+++|+++++++.|+.||+|+++||+|||+++|
T Consensus       160 ~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd  238 (313)
T 2ekl_A          160 IANAMGMKVLAYDILDIREKAEKINAK-AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVN  238 (313)
T ss_dssp             HHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBC
T ss_pred             HHHHCCCEEEEECCCcchhHHHhcCce-ecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccC
Confidence            9999999999999987642    2333 2589999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEccCCCCCCCCCc---ccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021361          238 EPELVSALLEGRLAGAGLDVYENEPEVPE---QMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLL  309 (313)
Q Consensus       238 ~~al~~al~~g~~~ga~lDV~~~EP~~~~---~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~  309 (313)
                      +++|.++|++|++.||++|||++||++++   |||++||+++|||+|++|.++.+++.+.+++|+.+|++|+|+.
T Consensus       239 ~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l~  313 (313)
T 2ekl_A          239 GKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGMI  313 (313)
T ss_dssp             HHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999998877   9999999999999999999999999999999999999999974

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=3e-65  Score=483.37  Aligned_cols=307  Identities=21%  Similarity=0.283  Sum_probs=266.7

Q ss_pred             ceEEEEeCCCChHHHHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeC--CCCCCHHHhhcCCCceEEEEcCCCCC
Q 021361            3 KIGVLMTTPMSNYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDT--KCGADAELIDSLPTLEIVASYSVGLD   79 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d   79 (313)
                      +|+||+.+...+...+.|++. +++..........+.+.+.++++|+++++.  ...+++++++++|+||||++.++|+|
T Consensus        17 ~~~vl~~d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   96 (364)
T 2j6i_A           17 EEKLYGCTENKLGIANWLKDQGHELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSD   96 (364)
T ss_dssp             CTTCTTBTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSSCCT
T ss_pred             CceEEEecCccHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence            455666666666666777663 555433222223355666778999998854  24689999999999999999999999


Q ss_pred             cCChhhhhcC--CcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCc-ccccccCCCEEEEEcCChhH
Q 021361           80 KIDLDKCKDK--AVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHF-ELGSKFSGKSVGIVGLGRIG  156 (313)
Q Consensus        80 ~id~~~~~~~--gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~-~~~~~l~g~~vgiiG~G~iG  156 (313)
                      ++|++++.++  ||.|+|+|++++.+||||++++||++.|++..+++.+++|.|..... ..+.+|+|++|||||+|+||
T Consensus        97 ~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG  176 (364)
T 2j6i_A           97 HIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIG  176 (364)
T ss_dssp             TBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHH
T ss_pred             cccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHH
Confidence            9999999999  99999999999999999999999999999999999999999963211 24679999999999999999


Q ss_pred             HHHHHHHHhcCCc-EEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEc
Q 021361          157 TAIAKRVEAFGCP-ISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI  230 (313)
Q Consensus       157 ~~~a~~l~~~g~~-V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~  230 (313)
                      +.+|++|++|||+ |++|||+....     .++....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+
T Consensus       177 ~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~  256 (364)
T 2j6i_A          177 YRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNT  256 (364)
T ss_dssp             HHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEEC
T ss_pred             HHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEEC
Confidence            9999999999998 99999876432     23333458999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCC--C---cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 021361          231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGL--N---NVVLLPHVGSDTEETSKAMADLVIENLVAHFS  304 (313)
Q Consensus       231 ~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~--p---nvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~  304 (313)
                      |||+++|+++|.++|++|++.||+||||++||++. +|||.+  |   ||++|||+||+|.++..++...+.+|+.+|++
T Consensus       257 arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~  336 (364)
T 2j6i_A          257 ARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFT  336 (364)
T ss_dssp             SCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999765 589999  9   99999999999999999999999999999999


Q ss_pred             CCCCC
Q 021361          305 NKPLL  309 (313)
Q Consensus       305 g~~~~  309 (313)
                      |+++.
T Consensus       337 g~~~~  341 (364)
T 2j6i_A          337 GKFDY  341 (364)
T ss_dssp             TCCCC
T ss_pred             CCCCC
Confidence            99443

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=2.4e-64  Score=479.65  Aligned_cols=295  Identities=22%  Similarity=0.364  Sum_probs=260.0

Q ss_pred             HHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeC--CCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEE
Q 021361           18 QELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDT--KCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVT   94 (313)
Q Consensus        18 ~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~   94 (313)
                      +.|++. +++....+.....+++.+.++++|++++..  ...+++++|+++|+||||++.++|+|+||+++++++||.|+
T Consensus        61 ~~l~~~g~~v~~~~~~~~~~~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~  140 (393)
T 2nac_A           61 KYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVA  140 (393)
T ss_dssp             HHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEE
T ss_pred             HHHHhCCCEEEEecCCCCCHHHHHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEE
Confidence            455553 344332222223345566678999998753  45789999999999999999999999999999999999999


Q ss_pred             eCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC-cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEE
Q 021361           95 NTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH  173 (313)
Q Consensus        95 n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~  173 (313)
                      |++++++++||||++++||++.|++..+++.+++|.|.... ...+.+|+|++|||||+|.||+.+|+++++|||+|++|
T Consensus       141 n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~  220 (393)
T 2nac_A          141 EVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYT  220 (393)
T ss_dssp             ECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEE
T ss_pred             eCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEE
Confidence            99999999999999999999999999999999999996311 12367899999999999999999999999999999999


Q ss_pred             CCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          174 SRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       174 ~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      ||+....     .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|.++|++|
T Consensus       221 d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  300 (393)
T 2nac_A          221 DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESG  300 (393)
T ss_dssp             CSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             cCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcC
Confidence            9986432     23333468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021361          249 RLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPV  312 (313)
Q Consensus       249 ~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v  312 (313)
                      ++.||++|||++||++. +|||++||+++|||+|++|.++..++...+++|+++|++|+++.|.+
T Consensus       301 ~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~  365 (393)
T 2nac_A          301 RLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEY  365 (393)
T ss_dssp             SEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGG
T ss_pred             CeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCccee
Confidence            99999999999999764 69999999999999999999999999999999999999999998864

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.5e-63  Score=468.53  Aligned_cols=312  Identities=22%  Similarity=0.332  Sum_probs=268.3

Q ss_pred             CCceEEEEeCCCC-hHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCC
Q 021361            1 MEKIGVLMTTPMS-NYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLD   79 (313)
Q Consensus         1 m~~~~vl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   79 (313)
                      |.||+|++.+... +..++.++..+++..+ +.....+++.....++++++++....+++++++++|+||||++.++|+|
T Consensus        19 ~~kp~i~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   97 (347)
T 1mx3_A           19 SHMPLVALLDGRDCTVEMPILKDVATVAFC-DAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFD   97 (347)
T ss_dssp             --CCEEEESSCSCCTTTHHHHTTTCEEEEC-CCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCT
T ss_pred             CCCCEEEEEcCCcchhhHHHhhccceEEec-CCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEcccccC
Confidence            4689999997432 2235667766655543 2222233333333577888887778899999999999999999999999


Q ss_pred             cCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCc-----ccc-cccCCCEEEEEcCC
Q 021361           80 KIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHF-----ELG-SKFSGKSVGIVGLG  153 (313)
Q Consensus        80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~-----~~~-~~l~g~~vgiiG~G  153 (313)
                      +||+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.+...     ..+ .+++|++|||||+|
T Consensus        98 ~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G  177 (347)
T 1mx3_A           98 NIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLG  177 (347)
T ss_dssp             TBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCS
T ss_pred             cccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeEC
Confidence            999999999999999999999999999999999999999999999999999963211     112 68999999999999


Q ss_pred             hhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEE
Q 021361          154 RIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILIN  229 (313)
Q Consensus       154 ~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in  229 (313)
                      .||+.+|++|++||++|++|||+....    .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||
T Consensus       178 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN  257 (347)
T 1mx3_A          178 RVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN  257 (347)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEE
Confidence            999999999999999999999976532    1233345899999999999999999999999999999999999999999


Q ss_pred             cCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC--CcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361          230 IGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV--PEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP  307 (313)
Q Consensus       230 ~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~--~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  307 (313)
                      +|||+++|+++|.++|++|++.||++|||+.||++  .+|||.+||+++|||+|++|.++..++.+.+++|+.+|++|++
T Consensus       258 ~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  337 (347)
T 1mx3_A          258 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRI  337 (347)
T ss_dssp             CSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999976  3589999999999999999999999999999999999999997


Q ss_pred             CC---CCCC
Q 021361          308 LL---TPVI  313 (313)
Q Consensus       308 ~~---~~v~  313 (313)
                      +.   |.||
T Consensus       338 ~~~l~~~v~  346 (347)
T 1mx3_A          338 PDSLKNCVN  346 (347)
T ss_dssp             TTTCSSBCC
T ss_pred             CcccCCCCC
Confidence            65   6664

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=3.2e-63  Score=467.29  Aligned_cols=311  Identities=24%  Similarity=0.388  Sum_probs=272.3

Q ss_pred             CCceEEEEeCC-CC--hHHHHHHHhcCcEEEecCCCcchhhHHhccC-----CceEEEee------CCCCCCHHHhhcCC
Q 021361            1 MEKIGVLMTTP-MS--NYLEQELAARFTLFKLWTQSCKNKFFQENSS-----AIRAVVGD------TKCGADAELIDSLP   66 (313)
Q Consensus         1 m~~~~vl~~~~-~~--~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~i~~~------~~~~~~~~~l~~~~   66 (313)
                      |+||+||++++ +.  +..++.|++.|++..+. .. ..+++.+.++     ++|+++..      ...++++++|+++|
T Consensus         1 m~~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~   78 (348)
T 2w2k_A            1 MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPAN-LT-THDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP   78 (348)
T ss_dssp             -CCCEEEECSSCCSSCHHHHHHHHHHSEEEECC-CC-CHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSC
T ss_pred             CCCcEEEEECCccccChHHHHHHHhcceEEecC-CC-CHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcc
Confidence            78899999987 43  56677888878765432 22 2334444444     78988864      24689999999998


Q ss_pred             -CceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCC---CcCCC---cccc
Q 021361           67 -TLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGK---WKNGH---FELG  139 (313)
Q Consensus        67 -~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~---w~~~~---~~~~  139 (313)
                       +||||++.++|+|++|+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.   |.+..   ...+
T Consensus        79 ~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~  158 (348)
T 2w2k_A           79 SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSA  158 (348)
T ss_dssp             TTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred             cCceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccC
Confidence             6999999999999999999999999999999999999999999999999999999999999999   94211   1347


Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHH-hcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~-~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      .+|+|++|||||+|.||+.+|++++ ++|++|++|||+....     .+.....++++++++||+|++|+|.+++|++++
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li  238 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI  238 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCB
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHh
Confidence            8999999999999999999999999 9999999999987532     133334589999999999999999999999999


Q ss_pred             CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHH
Q 021361          214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMAD  293 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~  293 (313)
                      +++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||++||....+||.+|||++|||+|++|.++..++..
T Consensus       239 ~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~  318 (348)
T 2w2k_A          239 DEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFER  318 (348)
T ss_dssp             CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHHHHHH
T ss_pred             hHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999995556899999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCC
Q 021361          294 LVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       294 ~~~~ni~~~~~g~~~~~~v~  313 (313)
                      .+++|+.+|++|+++.+.||
T Consensus       319 ~~~~ni~~~~~g~~~~~~v~  338 (348)
T 2w2k_A          319 LTMTNIDRFLLQGKPLLTPA  338 (348)
T ss_dssp             HHHHHHHHHHHTCCCCSSBC
T ss_pred             HHHHHHHHHHcCCCCcceec
Confidence            99999999999999998876

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=1e-62  Score=461.29  Aligned_cols=308  Identities=28%  Similarity=0.462  Sum_probs=276.6

Q ss_pred             CceEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361            2 EKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI   81 (313)
Q Consensus         2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      -|++|++++++.++..+.|++.+++... . ....+++.+.++++|+++++...++++++++++|+||||++.|+|+|++
T Consensus         1 m~~~il~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   78 (333)
T 2d0i_A            1 MRPKVGVLLKMKREALEELKKYADVEII-L-YPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNI   78 (333)
T ss_dssp             CCSEEEECSCCCHHHHHHHHTTSEEEEC-C-SCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTB
T ss_pred             CCcEEEEECCCCHHHHHHHHhcCCEEEe-C-CCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCcccccc
Confidence            0578999999988888899887765432 2 2234556666789999998777789999999999999999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC-cccc----cccCCCEEEEEcCChhH
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH-FELG----SKFSGKSVGIVGLGRIG  156 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~----~~l~g~~vgiiG~G~iG  156 (313)
                      |+++++++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.... ...+    ++|+|++|||||+|.||
T Consensus        79 d~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG  158 (333)
T 2d0i_A           79 DLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIG  158 (333)
T ss_dssp             CHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHH
T ss_pred             cHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHH
Confidence            999999999999999999999999999999999999999999999999995311 1235    78999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          157 TAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       157 ~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      +.+|+.++++|++|++|||+.+..    .+.. ..++++++++||+|++|+|.+++|+++++++.++.||+| +|||+||
T Consensus       159 ~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~sr  236 (333)
T 2d0i_A          159 KAIARRLIPFGVKLYYWSRHRKVNVEKELKAR-YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGR  236 (333)
T ss_dssp             HHHHHHHGGGTCEEEEECSSCCHHHHHHHTEE-ECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSC
T ss_pred             HHHHHHHHHCCCEEEEECCCcchhhhhhcCce-ecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCC
Confidence            999999999999999999987642    1222 348999999999999999999999999999899999999 9999999


Q ss_pred             CCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCC-cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021361          233 GAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLN-NVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTP  311 (313)
Q Consensus       233 g~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~p-nvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  311 (313)
                      |.++|+++|.++|++|++.||++|||++||++++|||++| |+++|||+|++|.++..++.+.+++|+.+|++|+++.|.
T Consensus       237 g~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~  316 (333)
T 2d0i_A          237 GALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPEDL  316 (333)
T ss_dssp             GGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             CcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcCc
Confidence            9999999999999999999999999999997767999999 999999999999999999999999999999999999988


Q ss_pred             CC
Q 021361          312 VI  313 (313)
Q Consensus       312 v~  313 (313)
                      ||
T Consensus       317 v~  318 (333)
T 2d0i_A          317 VN  318 (333)
T ss_dssp             SC
T ss_pred             cC
Confidence            75

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=2.6e-62  Score=458.88  Aligned_cols=310  Identities=39%  Similarity=0.599  Sum_probs=277.5

Q ss_pred             ceEEEEeCCCChHHHHHHHhcCcEEEecCC-CcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361            3 KIGVLMTTPMSNYLEQELAARFTLFKLWTQ-SCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      |++|+++.++.+...+.|++.+++...... +...+++.+.++++|+++++...++++++++++|+||||++.|+|+|++
T Consensus         2 ~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   81 (334)
T 2dbq_A            2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNI   81 (334)
T ss_dssp             CCEEEESSCCCHHHHHHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CcEEEEecCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCcccccc
Confidence            468999888888888889887765442222 2244566677889999999877789999999999999999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCc----C-C-CcccccccCCCEEEEEcCChh
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWK----N-G-HFELGSKFSGKSVGIVGLGRI  155 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~----~-~-~~~~~~~l~g~~vgiiG~G~i  155 (313)
                      |+++++++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|.    . . ....+++|+|++|||||+|.|
T Consensus        82 d~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~i  161 (334)
T 2dbq_A           82 DIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRI  161 (334)
T ss_dssp             CHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHH
T ss_pred             cHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHH
Confidence            999999999999999999999999999999999999999999999999995    1 1 112368999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          156 GTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       156 G~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      |+.+|++++++|++|++|||+.+..    .+.. ..++++++++||+|++|+|.+++++++++++.++.||+|++|||+|
T Consensus       162 G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~s  240 (334)
T 2dbq_A          162 GQAIAKRAKGFNMRILYYSRTRKEEVERELNAE-FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA  240 (334)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred             HHHHHHHHHhCCCEEEEECCCcchhhHhhcCcc-cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence            9999999999999999999987642    1222 3589999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021361          232 RGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTP  311 (313)
Q Consensus       232 rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  311 (313)
                      ||.++|+++|.++|++|++.||++|||++||...+|||.+|||++|||+|+.|.++..++...+++|+.+|++|+++.+.
T Consensus       241 rg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~  320 (334)
T 2dbq_A          241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPPTL  320 (334)
T ss_dssp             CGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             CCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence            99999999999999999999999999999994456999999999999999999999999999999999999999999988


Q ss_pred             CC
Q 021361          312 VI  313 (313)
Q Consensus       312 v~  313 (313)
                      ||
T Consensus       321 v~  322 (334)
T 2dbq_A          321 VN  322 (334)
T ss_dssp             SC
T ss_pred             cC
Confidence            76

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=8e-63  Score=456.13  Aligned_cols=290  Identities=21%  Similarity=0.324  Sum_probs=261.5

Q ss_pred             EEEEeCCCChHHHHHHHhc-CcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCCh
Q 021361            5 GVLMTTPMSNYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDL   83 (313)
Q Consensus         5 ~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      +||++.++.++..+.|++. +++.            .+.++++|+++++.   .+.++++++|+||||++.|+|+|++|+
T Consensus         2 ~il~~~~~~~~~~~~l~~~~~~v~------------~~~~~~~d~~i~~~---~~~~~l~~~~~Lk~I~~~~~G~d~id~   66 (303)
T 1qp8_A            2 ELYVNFELPPEAEEELRKYFKIVR------------GGDLGNVEAALVSR---ITAEELAKMPRLKFIQVVTAGLDHLPW   66 (303)
T ss_dssp             EEECCSCCCHHHHHHHHTTCEEEC------------SSCCTTBCCCCBSC---CCHHHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             EEEEccCCCHHHHHHHHhcCCccc------------hhhhCCCEEEEECC---CCHHHHhhCCCCcEEEECCcCcccccH
Confidence            7889888888888888765 3221            13467889988754   357999999999999999999999999


Q ss_pred             hhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHH
Q 021361           84 DKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l  163 (313)
                      +++ ++||.|+|++++++.+||||+++++|++.|++..+++.+++|.|...  ..+++++|++|||||+|.||+.+|+++
T Consensus        67 ~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~--~~~~~l~g~~vgIIG~G~IG~~~A~~l  143 (303)
T 1qp8_A           67 ESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD--VEIPLIQGEKVAVLGLGEIGTRVGKIL  143 (303)
T ss_dssp             TTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC--SCCCCCTTCEEEEESCSTHHHHHHHHH
T ss_pred             HHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCC--CCCCCCCCCEEEEEccCHHHHHHHHHH
Confidence            885 79999999999999999999999999999999999999999999632  124589999999999999999999999


Q ss_pred             HhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHH
Q 021361          164 EAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVS  243 (313)
Q Consensus       164 ~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~  243 (313)
                      ++||++|++|||+.. ..+.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|.+
T Consensus       144 ~~~G~~V~~~dr~~~-~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~  222 (303)
T 1qp8_A          144 AALGAQVRGFSRTPK-EGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLR  222 (303)
T ss_dssp             HHTTCEEEEECSSCC-CSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHH
T ss_pred             HHCCCEEEEECCCcc-ccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHH
Confidence            999999999999876 2233345689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCceEEEccCC-CCCCCCC-cccCCCCcEEEcCCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          244 ALLEGRLAGAGLDVY-ENEPEVP-EQMLGLNNVVLLPHVGSD--TEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       244 al~~g~~~ga~lDV~-~~EP~~~-~~l~~~pnvi~TPHia~~--t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      +|++|++.||++||| ++||++. +|||++||+++|||+||+  |.++.+++.+.+++|+.+|++|+++.|.||
T Consensus       223 aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~  296 (303)
T 1qp8_A          223 ILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIAK  296 (303)
T ss_dssp             HHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCBCC
T ss_pred             HHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCceeC
Confidence            999999999999999 8899764 599999999999999998  999999999999999999999999999876

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=8.4e-62  Score=454.83  Aligned_cols=311  Identities=32%  Similarity=0.506  Sum_probs=277.4

Q ss_pred             CceEEEEeCCCChHHHHHHHhc--CcEEEecCC-CcchhhHHhccCCceEEEeeCCCCCCHHHhhcC-CCceEEEEcCCC
Q 021361            2 EKIGVLMTTPMSNYLEQELAAR--FTLFKLWTQ-SCKNKFFQENSSAIRAVVGDTKCGADAELIDSL-PTLEIVASYSVG   77 (313)
Q Consensus         2 ~~~~vl~~~~~~~~~~~~l~~~--~~~~~~~~~-~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~~G   77 (313)
                      .+++|++++++.+...+.|++.  +++...... ....+++.+.++++|+++++...++++++++++ |+||||++.|+|
T Consensus         7 ~~~~il~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~G   86 (330)
T 2gcg_A            7 RLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVG   86 (330)
T ss_dssp             CCEEEEESSCCCHHHHHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESSSC
T ss_pred             CCCEEEEECCCCHHHHHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEECCcc
Confidence            4678999998888888888876  555432211 223456666778999999877778999999998 999999999999


Q ss_pred             CCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcC-C-CcccccccCCCEEEEEcCChh
Q 021361           78 LDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKN-G-HFELGSKFSGKSVGIVGLGRI  155 (313)
Q Consensus        78 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~-~-~~~~~~~l~g~~vgiiG~G~i  155 (313)
                      +|++|+++++++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|.. . ....+++++|++|||||+|.|
T Consensus        87 ~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~i  166 (330)
T 2gcg_A           87 IDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRI  166 (330)
T ss_dssp             CTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSHH
T ss_pred             cccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCHH
Confidence            99999999999999999999999999999999999999999999999999999963 1 123468999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEc
Q 021361          156 GTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINI  230 (313)
Q Consensus       156 G~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~  230 (313)
                      |+.+|+.++++|++|++||++....     .+... .++++++++||+|++|+|.+++++++++++.++.||+|++|||+
T Consensus       167 G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~  245 (330)
T 2gcg_A          167 GQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEF-VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI  245 (330)
T ss_dssp             HHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEEC
T ss_pred             HHHHHHHHHHCCCEEEEECCCCcchhHHHhcCcee-CCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEEC
Confidence            9999999999999999999876432     12333 38999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021361          231 GRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLL  309 (313)
Q Consensus       231 ~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~  309 (313)
                      |||+++|+++|.++|++|++.||++|||++||+++ +|||++|||++|||+|+.|.++..++...+++|+.+|++|+++.
T Consensus       246 srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~  325 (330)
T 2gcg_A          246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMP  325 (330)
T ss_dssp             SCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred             CCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999665 59999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 021361          310 TPVI  313 (313)
Q Consensus       310 ~~v~  313 (313)
                      |.||
T Consensus       326 ~~v~  329 (330)
T 2gcg_A          326 SELK  329 (330)
T ss_dssp             TEEC
T ss_pred             CCCC
Confidence            8876

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.2e-60  Score=438.15  Aligned_cols=279  Identities=24%  Similarity=0.339  Sum_probs=244.3

Q ss_pred             EEEEeCCCChHHHHHHHh---cCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361            5 GVLMTTPMSNYLEQELAA---RFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI   81 (313)
Q Consensus         5 ~vl~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      +|++..|++....+...+   .+.... +          +.++++|+++++. ..+      ++|+||||++.|+|+|+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~----------~~~~~ad~li~~~-~~~------~~~~Lk~I~~~~~G~d~i   63 (290)
T 3gvx_A            2 DVYVNFPADGHVREIAKTVLDGFDLHW-Y----------PDYYDAEAQVIKD-RYV------LGKRTKMIQAISAGVDHI   63 (290)
T ss_dssp             CEEECSCCCHHHHHHHHHHTTTSCEEE-T----------TSCCCCSEEEESS-CCC------CCSSCCEEEECSSCCTTS
T ss_pred             ceEEecCCcchHHHHHHHHhccccccc-C----------cchhhhhhhhhhh-hhh------hhhhhHHHHHHhcCCcee
Confidence            467777887766554433   333221 1          3567899999843 232      789999999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHH
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAK  161 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~  161 (313)
                      |++++.+++|.++| ++.++.+||||+++++|++.|++..+++.+++|.|.+..   .++|+|++|||||+|.||+.+|+
T Consensus        64 d~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~---~~~l~g~tvGIIGlG~IG~~vA~  139 (290)
T 3gvx_A           64 DVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP---TTLLYGKALGILGYGGIGRRVAH  139 (290)
T ss_dssp             CGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC---CCCCTTCEEEEECCSHHHHHHHH
T ss_pred             ecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCC---ceeeecchheeeccCchhHHHHH
Confidence            99999887766666 488999999999999999999999999999999997532   37899999999999999999999


Q ss_pred             HHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHH
Q 021361          162 RVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPEL  241 (313)
Q Consensus       162 ~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al  241 (313)
                      +|++|||+|++|||+...........++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|
T Consensus       140 ~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL  219 (290)
T 3gvx_A          140 LAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDM  219 (290)
T ss_dssp             HHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHH
T ss_pred             HHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcch
Confidence            99999999999999886654445556999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361          242 VSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVG-SDTEETSKAMADLVIENLVAHFSNKP  307 (313)
Q Consensus       242 ~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia-~~t~~~~~~~~~~~~~ni~~~~~g~~  307 (313)
                      .++|++|++.||++|||++||+  +|||++||+++|||+| ++|.++.+++.+.+++|+.+|++|+.
T Consensus       220 ~~aL~~g~i~ga~lDV~~~EP~--~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          220 IGFLKERSDVWYLSDVWWNEPE--ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             HHHHHHCTTCEEEESCCTTTTS--CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred             hhhhhhccceEEeeccccCCcc--cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence            9999999999999999999997  8999999999999999 89999999999999999999999974

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=8.6e-61  Score=452.07  Aligned_cols=279  Identities=20%  Similarity=0.317  Sum_probs=245.1

Q ss_pred             ceEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCC
Q 021361            3 KIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKID   82 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id   82 (313)
                      +++|++.+.+ +...+.+++..++......+..    .+.++++|+++++..+++++++++ .++||||++.|+|+||||
T Consensus         3 mmkIl~~~~~-p~~~~~~~~~~~v~~~~~~~~~----~~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~iD   76 (381)
T 3oet_A            3 AMKILVDENM-PYARELFSRLGEVKAVPGRPIP----VEELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDHVD   76 (381)
T ss_dssp             CCEEEEETTS-TTHHHHHTTSSEEEEECC---C----HHHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTTBC
T ss_pred             ceEEEECCCC-cHHHHHHhhCCcEEEeCCCCCC----HHHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEccccccccC
Confidence            5899998876 4455666666655433222222    234688999999887889999999 577999999999999999


Q ss_pred             hhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHH
Q 021361           83 LDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKR  162 (313)
Q Consensus        83 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~  162 (313)
                      +++++++||.|+|+||+++.+||||+++++|++.|+.                   +.+|+|++|||||+|.||+.+|++
T Consensus        77 ~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~-------------------g~~l~gktvGIIGlG~IG~~vA~~  137 (381)
T 3oet_A           77 EAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD-------------------GFSLRDRTIGIVGVGNVGSRLQTR  137 (381)
T ss_dssp             HHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT-------------------TCCGGGCEEEEECCSHHHHHHHHH
T ss_pred             HHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc-------------------CCccCCCEEEEEeECHHHHHHHHH
Confidence            9999999999999999999999999999999998852                   357999999999999999999999


Q ss_pred             HHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChH----hhhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361          163 VEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEE----THHIVNRKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       163 l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~----t~~~i~~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      +++|||+|.+|||+...........++++++++||+|++|+|++++    |+++++++.|++||+|++|||+|||+++|+
T Consensus       138 l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde  217 (381)
T 3oet_A          138 LEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDN  217 (381)
T ss_dssp             HHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCH
T ss_pred             HHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCH
Confidence            9999999999998654332233457899999999999999999999    999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021361          239 PELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKP  307 (313)
Q Consensus       239 ~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  307 (313)
                      ++|+++|++|++.||+||||++||+++++||.++ +++|||+||+|.++..++...+++|+.+|+.+.+
T Consensus       218 ~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~  285 (381)
T 3oet_A          218 AALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQ  285 (381)
T ss_dssp             HHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCc
Confidence            9999999999999999999999998877899875 8999999999999999999999999999998854

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=3.8e-60  Score=468.87  Aligned_cols=309  Identities=27%  Similarity=0.405  Sum_probs=278.6

Q ss_pred             CCceEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361            1 MEKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK   80 (313)
Q Consensus         1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      |++|+||+++++.+...+.|++.+++.. .. ....+++.+.++++|++++++.+++++++++++|+||||++.|+|+||
T Consensus         2 m~~~~vl~~~~~~~~~~~~l~~~~~v~~-~~-~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   79 (529)
T 1ygy_A            2 VSLPVVLIADKLAPSTVAALGDQVEVRW-VD-GPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDN   79 (529)
T ss_dssp             -CCCEEEECSSCCGGGGTTSCSSSEEEE-CC-TTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTT
T ss_pred             CCCcEEEEeCCCCHHHHHHHhcCceEEE-cC-CCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCcCc
Confidence            6789999999988887777776665543 22 223455666788999999987788999999999999999999999999


Q ss_pred             CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHH
Q 021361           81 IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIA  160 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a  160 (313)
                      +|++++.++||.|+|+|++++.+||||++++||++.|+++++++.+++|.|.+.. ..+.+|+|++|||||+|.||+.+|
T Consensus        80 id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~l~g~~vgIIG~G~IG~~vA  158 (529)
T 1ygy_A           80 VDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSS-FSGTEIFGKTVGVVGLGRIGQLVA  158 (529)
T ss_dssp             BCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG-CCBCCCTTCEEEEECCSHHHHHHH
T ss_pred             cCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccC-cCccccCCCEEEEEeeCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999997432 347899999999999999999999


Q ss_pred             HHHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCcc
Q 021361          161 KRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI  236 (313)
Q Consensus       161 ~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v  236 (313)
                      ++|+++|++|++|||+....    .+... .++++++++||+|++|+|.++.|+++++++.++.||+|+++||+|||+++
T Consensus       159 ~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv  237 (529)
T 1ygy_A          159 QRIAAFGAYVVAYDPYVSPARAAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV  237 (529)
T ss_dssp             HHHHTTTCEEEEECTTSCHHHHHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSB
T ss_pred             HHHHhCCCEEEEECCCCChhHHHhcCcEE-cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchh
Confidence            99999999999999986432    23333 38999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021361          237 DEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLLTPVI  313 (313)
Q Consensus       237 d~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  313 (313)
                      |+++|.++|++|++.||++|||+.||...+|||++||+++|||+++.|.++.+++...+++|+.+|+.|+++.+.|+
T Consensus       238 ~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~~~~v~  314 (529)
T 1ygy_A          238 DEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  314 (529)
T ss_dssp             CHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             hHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999999999999999999777799999999999999999999999999999999999999999877664

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.5e-58  Score=435.22  Aligned_cols=279  Identities=17%  Similarity=0.310  Sum_probs=244.0

Q ss_pred             eEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCCh
Q 021361            4 IGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDL   83 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      ++|++.+.++ ...+.+++..++.. ....   +...+.++++|++++++.+++++++++ +|+||||++.++|+||+|+
T Consensus         1 mkil~~~~~~-~~~~~~~~~~~v~~-~~~~---~~~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD~   74 (380)
T 2o4c_A            1 MRILADENIP-VVDAFFADQGSIRR-LPGR---AIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLDL   74 (380)
T ss_dssp             CEEEEETTCT-THHHHHGGGSEEEE-ECGG---GCSTTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBCH
T ss_pred             CEEEEecCch-HHHHHHHhCCcEEE-ecCC---cCChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhhH
Confidence            3688877654 34566666555433 2211   112234588999999877889999999 8999999999999999999


Q ss_pred             hhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHH
Q 021361           84 DKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l  163 (313)
                      ++++++||.|+|+||+++.+||||+++++|++.|+.                   +.+|+|++|||||+|+||+.+|++|
T Consensus        75 ~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~-------------------~~~l~g~tvGIIGlG~IG~~vA~~l  135 (380)
T 2o4c_A           75 DYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR-------------------GADLAERTYGVVGAGQVGGRLVEVL  135 (380)
T ss_dssp             HHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH-------------------TCCGGGCEEEEECCSHHHHHHHHHH
T ss_pred             HHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh-------------------hcccCCCEEEEEeCCHHHHHHHHHH
Confidence            999999999999999999999999999999999862                   2479999999999999999999999


Q ss_pred             HhcCCcEEEECCCCccc-ccccccCCHHHHHhhCCeeEEecCCChH----hhhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361          164 EAFGCPISYHSRSEKSD-ANYKYYTNIIDLASNCQILIVACSLTEE----THHIVNRKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       164 ~~~g~~V~~~~~~~~~~-~~~~~~~~l~~l~~~aDvv~l~~p~~~~----t~~~i~~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      +++|++|++|||+.... .+. ...++++++++||+|++|+|++++    |+++++++.|+.||+|++|||+|||+++|+
T Consensus       136 ~~~G~~V~~~d~~~~~~~~g~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~  214 (380)
T 2o4c_A          136 RGLGWKVLVCDPPRQAREPDG-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDN  214 (380)
T ss_dssp             HHTTCEEEEECHHHHHHSTTS-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCH
T ss_pred             HHCCCEEEEEcCChhhhccCc-ccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCH
Confidence            99999999999865432 222 346899999999999999999999    999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021361          239 PELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLL  309 (313)
Q Consensus       239 ~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~  309 (313)
                      ++|.++|++|++.||+||||++||+++++|+. +|+++|||+||+|.++..++...+++|+.+|++|++..
T Consensus       215 ~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~~  284 (380)
T 2o4c_A          215 QALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERV  284 (380)
T ss_dssp             HHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            99999999999999999999999987778887 49999999999999999999999999999999998643

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=3.8e-37  Score=299.21  Aligned_cols=222  Identities=14%  Similarity=0.189  Sum_probs=189.6

Q ss_pred             CCceEEE-EcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCC
Q 021361           66 PTLEIVA-SYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSG  144 (313)
Q Consensus        66 ~~Lk~i~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g  144 (313)
                      |+++.|+ .+++|+|++  +++.++||.|+|+++++. +|||+.       +|++....+....| |.+   ..+.+++|
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~---~~g~~L~G  277 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKR---ATDVMIAG  277 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHH---HHCCCCTT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhh---ccccccCC
Confidence            7899998 789999998  788999999999999999 999953       46665555555555 752   24678999


Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      ++|||||+|.||+.+|+++++||++|++||+++...     .++. ..++++++++||+|++|+    .|+++|+++.|+
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~-~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~  352 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYR-VVTMEYAADKADIFVTAT----GNYHVINHDHMK  352 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECS----SSSCSBCHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCE-eCCHHHHHhcCCEEEECC----CcccccCHHHHh
Confidence            999999999999999999999999999999987542     1332 358999999999999997    678999999999


Q ss_pred             hcCCCcEEEEcCCCCc-cCHHHHHHHHHhCCceEEEccCCCCCCCCC-cccCCC--CcEEEcCCCC-CCcHH-HHHHHHH
Q 021361          220 ALGPSGILINIGRGAH-IDEPELVSALLEGRLAGAGLDVYENEPEVP-EQMLGL--NNVVLLPHVG-SDTEE-TSKAMAD  293 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~-vd~~al~~al~~g~~~ga~lDV~~~EP~~~-~~l~~~--pnvi~TPHia-~~t~~-~~~~~~~  293 (313)
                      +||+|++|||+|||++ ||+++| ++|++|+|.    |+++.||+++ +|||.+  ||+++| |+| |++.+ ...++..
T Consensus       353 ~MK~gAilINvgrg~veID~~aL-~AL~~g~I~----~~~Dv~plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~  426 (494)
T 3d64_A          353 AMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK----PQVDHIIFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNSFTN  426 (494)
T ss_dssp             HCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE----TTEEEEECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHHHHH
T ss_pred             hCCCCcEEEEcCCCcchhchHHH-HhhhcCccc----eeEEEEECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHHHHH
Confidence            9999999999999999 699999 999999987    5555567654 589988  999999 999 66754 6778899


Q ss_pred             HHHHHHHHHHcCCCCCCCC
Q 021361          294 LVIENLVAHFSNKPLLTPV  312 (313)
Q Consensus       294 ~~~~ni~~~~~g~~~~~~v  312 (313)
                      .+++|+.+|++|+++.+.|
T Consensus       427 ~~~~ni~~~~~g~~~~n~V  445 (494)
T 3d64_A          427 QTLAQIELFTRGGEYANKV  445 (494)
T ss_dssp             HHHHHHHHHHHGGGSCSSE
T ss_pred             HHHHHHHHHHcCCCCCCce
Confidence            9999999999999998876

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=8.8e-37  Score=295.64  Aligned_cols=225  Identities=13%  Similarity=0.162  Sum_probs=196.1

Q ss_pred             CCCceEEE-EcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccC
Q 021361           65 LPTLEIVA-SYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFS  143 (313)
Q Consensus        65 ~~~Lk~i~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~  143 (313)
                      +|+++.|+ .+++|+|++  +++.++||.++|+++++. +|+|       +++|++..+.+.++.| |.+   ..+.++.
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r---~~~~~l~  256 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR---ATDFLIS  256 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH---HHCCCCT
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh---ccccccC
Confidence            37899998 789999998  788999999999999999 9999       4568888877788777 863   2356899


Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      |++|||||+|.||+.+|+++++||++|++||+++...     .++. ..++++++++||+|++|+    .|+++|+++.|
T Consensus       257 GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~-~~~l~ell~~aDiVi~~~----~t~~lI~~~~l  331 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFN-VVTLDEIVDKGDFFITCT----GNVDVIKLEHL  331 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECC----SSSSSBCHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCE-ecCHHHHHhcCCEEEECC----ChhhhcCHHHH
Confidence            9999999999999999999999999999999987542     2232 458999999999999995    78899999999


Q ss_pred             hhcCCCcEEEEcCCCCc-cCHHHHHH--HHHhCCceEEEccCCCCCCCCCcccCCC--CcEEEcCCCC-CCcHH-HHHHH
Q 021361          219 DALGPSGILINIGRGAH-IDEPELVS--ALLEGRLAGAGLDVYENEPEVPEQMLGL--NNVVLLPHVG-SDTEE-TSKAM  291 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~-vd~~al~~--al~~g~~~ga~lDV~~~EP~~~~~l~~~--pnvi~TPHia-~~t~~-~~~~~  291 (313)
                      +.||+|++|||+|||++ ||+++|.+  +|++|+|. +++|||+.++  .+|||.+  ||+++| |+| |++.+ ...++
T Consensus       332 ~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv~t-H~atghp~e~~~~s~  407 (479)
T 1v8b_A          332 LKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLLNL-GCATGHPAFVMSFSF  407 (479)
T ss_dssp             TTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBHHH-HSSCCSCHHHHHHHH
T ss_pred             hhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEEEE-eccCCCCchhHHHHH
Confidence            99999999999999999 99999999  99999998 8899984322  4588888  999999 999 66756 56788


Q ss_pred             HHHHHHHHHHHHcCC--CCCCCC
Q 021361          292 ADLVIENLVAHFSNK--PLLTPV  312 (313)
Q Consensus       292 ~~~~~~ni~~~~~g~--~~~~~v  312 (313)
                      ...+++|+.+|++|+  ++.|.|
T Consensus       408 a~~~~~ni~~~~~g~~~~l~n~V  430 (479)
T 1v8b_A          408 CNQTFAQLDLWQNKDTNKYENKV  430 (479)
T ss_dssp             HHHHHHHHHHHHTTTSSSCCSSE
T ss_pred             HHHHHHHHHHHHcCCCCcCCcce
Confidence            899999999999999  888764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=1.8e-29  Score=232.00  Aligned_cols=205  Identities=14%  Similarity=0.168  Sum_probs=163.0

Q ss_pred             CCceEEEEeCCC--ChHHHHHHHhc-CcEEEec-CCC-------cchhhHHhccCCceEEEee----------------C
Q 021361            1 MEKIGVLMTTPM--SNYLEQELAAR-FTLFKLW-TQS-------CKNKFFQENSSAIRAVVGD----------------T   53 (313)
Q Consensus         1 m~~~~vl~~~~~--~~~~~~~l~~~-~~~~~~~-~~~-------~~~~~l~~~~~~~~~i~~~----------------~   53 (313)
                      |++++|++.+..  ..+..+.|.+. +++.... +..       ...+.+.+.++++|+++++                .
T Consensus         3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence            678899888732  23445667653 5554321 111       1223445567889999985                2


Q ss_pred             CCCCCHHHhhcCCCceEEEEcCCCCCcCCh-hhhhcCCcEEEeCC------CCCcHHHHHHHHHHHHHHhhchHHHHHHH
Q 021361           54 KCGADAELIDSLPTLEIVASYSVGLDKIDL-DKCKDKAVRVTNTP------DVLTDDVADLAVGLVLAVLRRVCEFDEFV  126 (313)
Q Consensus        54 ~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~-~~~~~~gI~v~n~~------~~~~~~vAE~~l~~~l~~~r~~~~~~~~~  126 (313)
                      ..++++++++++|+||+|+   +|+|++|+ ++++++||.|+|++      ++++.+|||++++++|..           
T Consensus        83 ~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~-----------  148 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH-----------  148 (293)
T ss_dssp             CCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred             CccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh-----------
Confidence            3468999999999999997   89999998 89999999999998      789999999999998863           


Q ss_pred             HcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc--cCCHHHHHhhCCee
Q 021361          127 KSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY--YTNIIDLASNCQIL  199 (313)
Q Consensus       127 ~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~--~~~l~~l~~~aDvv  199 (313)
                                 .+.+++|++|||||+|.||+.+|++++++|++|++|||+.++.     .+...  ..++++++++||+|
T Consensus       149 -----------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvV  217 (293)
T 3d4o_A          149 -----------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVC  217 (293)
T ss_dssp             -----------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEE
T ss_pred             -----------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEE
Confidence                       1356899999999999999999999999999999999987532     12222  24788999999999


Q ss_pred             EEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          200 IVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       200 ~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                      ++|+|.     ++++++.++.||+++++||++||+.
T Consensus       218 i~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          218 INTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             EECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            999996     6889999999999999999999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.94  E-value=1.1e-26  Score=214.09  Aligned_cols=211  Identities=15%  Similarity=0.218  Sum_probs=157.4

Q ss_pred             CCceEEEEeCCC--ChHHHHHHHhc-CcEEEe-cCCCc-------chhhHHhccCCceEEEee----C----------CC
Q 021361            1 MEKIGVLMTTPM--SNYLEQELAAR-FTLFKL-WTQSC-------KNKFFQENSSAIRAVVGD----T----------KC   55 (313)
Q Consensus         1 m~~~~vl~~~~~--~~~~~~~l~~~-~~~~~~-~~~~~-------~~~~l~~~~~~~~~i~~~----~----------~~   55 (313)
                      |+.++|++.+.-  .....+.|.+. +++... +++..       ..+.+.+.++++|+++.+    .          ..
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence            677889998742  23445666654 444321 11111       122344556789999972    1          34


Q ss_pred             C--CCHHHhhcCCCceEEEEcCCCCCcCC-hhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCc
Q 021361           56 G--ADAELIDSLPTLEIVASYSVGLDKID-LDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWK  132 (313)
Q Consensus        56 ~--~~~~~l~~~~~Lk~i~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~  132 (313)
                      +  +++++++.+|++|+|+   +|+|++| ++++.++||.|+|+++.+  ++         ++.|+++.+     +|.|.
T Consensus        85 ~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~~  145 (300)
T 2rir_A           85 EVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTIM  145 (300)
T ss_dssp             CEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHHH
T ss_pred             CccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHHH
Confidence            5  8899999999999998   8999999 999999999999999964  33         334665543     33453


Q ss_pred             CCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccc--cCCHHHHHhhCCeeEEecCC
Q 021361          133 NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKY--YTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       133 ~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~--~~~l~~l~~~aDvv~l~~p~  205 (313)
                      ......+.+++|++|||||+|.||+.+|+.++++|++|++|||+.+...     +...  ..++++++++||+|++|+|.
T Consensus       146 ~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~  225 (300)
T 2rir_A          146 LAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS  225 (300)
T ss_dssp             HHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred             HHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh
Confidence            1111246789999999999999999999999999999999999875321     2221  35789999999999999996


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                           ++++++.++.||+|+++||++||+.
T Consensus       226 -----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          226 -----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             -----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             -----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence                 6889999999999999999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.91  E-value=2.5e-26  Score=223.79  Aligned_cols=223  Identities=15%  Similarity=0.179  Sum_probs=175.8

Q ss_pred             Cce-EEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCC
Q 021361           67 TLE-IVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGK  145 (313)
Q Consensus        67 ~Lk-~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~  145 (313)
                      +++ ++-.+++|+|++  .++.++||.++|+++++. +|+|+.       +|++.........+ |.+   ..+..+.|+
T Consensus       210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g-~~r---~~~~~l~Gk  275 (494)
T 3ce6_A          210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG-INR---GTDALIGGK  275 (494)
T ss_dssp             HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH-HHH---HHCCCCTTC
T ss_pred             CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH-HHh---ccCCCCCcC
Confidence            444 445789999998  778899999999999998 999953       34444333333333 432   113468999


Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      +|+|+|+|.||+.+|++++++|++|+++|+++...     .++. ..+++++++++|+|+.|++    +.++++++.++.
T Consensus       276 tV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~  350 (494)
T 3ce6_A          276 KVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATG----NKDIIMLEHIKA  350 (494)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSS----SSCSBCHHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCC----CHHHHHHHHHHh
Confidence            99999999999999999999999999999987542     2333 3578999999999999874    456889889999


Q ss_pred             cCCCcEEEEcCCCCc-cCHHHHHH-HHHhCCceEEEccCCCCCCCC-CcccCCCCcEE----EcCCCCCCcHHHHHHHHH
Q 021361          221 LGPSGILINIGRGAH-IDEPELVS-ALLEGRLAGAGLDVYENEPEV-PEQMLGLNNVV----LLPHVGSDTEETSKAMAD  293 (313)
Q Consensus       221 mk~ga~~in~~rg~~-vd~~al~~-al~~g~~~ga~lDV~~~EP~~-~~~l~~~pnvi----~TPHia~~t~~~~~~~~~  293 (313)
                      ||+|++++|+||++. +|.++|.+ +++++++. +.+|+++.++.. +-.++..+|++    +|||+++.+.+.   +..
T Consensus       351 mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s---~~~  426 (494)
T 3ce6_A          351 MKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNS---FAN  426 (494)
T ss_dssp             SCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHH---HHH
T ss_pred             cCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHH---HHH
Confidence            999999999999999 99999998 78888887 567987664411 12477788988    999999888765   477


Q ss_pred             HHHHHHHHHHcCCCCCCCC
Q 021361          294 LVIENLVAHFSNKPLLTPV  312 (313)
Q Consensus       294 ~~~~ni~~~~~g~~~~~~v  312 (313)
                      .+.++++.|.+|+++.+.|
T Consensus       427 qa~~ai~~~~~g~~~~~~V  445 (494)
T 3ce6_A          427 QTIAQIELWTKNDEYDNEV  445 (494)
T ss_dssp             HHHHHHHHHHTGGGCCSSE
T ss_pred             HHHHHHHHHHcCCCCCCEE
Confidence            8999999999998776543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.90  E-value=3.4e-23  Score=196.58  Aligned_cols=268  Identities=13%  Similarity=0.127  Sum_probs=187.0

Q ss_pred             CCChHHHHHHHh-cCcEEEecCC-----CcchhhHH-----------hccCCceEEEeeCCCCCCHHHhhcCCCceEEEE
Q 021361           11 PMSNYLEQELAA-RFTLFKLWTQ-----SCKNKFFQ-----------ENSSAIRAVVGDTKCGADAELIDSLPTLEIVAS   73 (313)
Q Consensus        11 ~~~~~~~~~l~~-~~~~~~~~~~-----~~~~~~l~-----------~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~   73 (313)
                      +++|+..++|.+ .+++.. ...     ....+++.           +.++++|+|+. -..++++++....|+..++..
T Consensus        17 ~ltP~~v~~L~~~G~~V~v-e~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~~-vk~p~~~e~~~l~~~~~l~~~   94 (377)
T 2vhw_A           17 AITPAGVAELTRRGHEVLI-QAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLK-VKEPIAAEYGRLRHGQILFTF   94 (377)
T ss_dssp             SCCHHHHHHHHHTTCEEEE-ETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEEC-SSCCCGGGGGGCCTTCEEEEC
T ss_pred             CcCHHHHHHHHhCCCEEEE-eCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEEE-eCCCChHHHhhcCCCCEEEEE
Confidence            478888888865 455432 110     11122222           23356888765 445667788777788888888


Q ss_pred             cCCCCCcCChhhhhcCCcEEE----------eCCCCCcHHHHHHHHHHHHHHh-hchHHHHHHHHcCCCcCCCccccccc
Q 021361           74 YSVGLDKIDLDKCKDKAVRVT----------NTPDVLTDDVADLAVGLVLAVL-RRVCEFDEFVKSGKWKNGHFELGSKF  142 (313)
Q Consensus        74 ~~~G~d~id~~~~~~~gI~v~----------n~~~~~~~~vAE~~l~~~l~~~-r~~~~~~~~~~~~~w~~~~~~~~~~l  142 (313)
                      ...++|.-.++++.++||.+.          |.|..  .+.||++..+++.+. |++.    ....|.|...  ....++
T Consensus        95 ~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~--s~~ae~ag~~a~~~a~r~l~----~~~~g~~~~~--~~~~~l  166 (377)
T 2vhw_A           95 LHLAASRACTDALLDSGTTSIAYETVQTADGALPLL--APMSEVAGRLAAQVGAYHLM----RTQGGRGVLM--GGVPGV  166 (377)
T ss_dssp             CCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT--HHHHHHHHHHHHHHHHHHTS----GGGTSCCCCT--TCBTTB
T ss_pred             ecccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc--CchHHHHHHHHHHHHHHHHH----HhcCCCcccc--cCCCCC
Confidence            888899988999999999998          44544  467799985554444 6663    2334443211  012379


Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cccc------ccCCHHHHHhhCCeeEEec--CCChH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYK------YYTNIIDLASNCQILIVAC--SLTEE  208 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~------~~~~l~~l~~~aDvv~l~~--p~~~~  208 (313)
                      .|++|+|+|+|.||+.+++.++++|++|+++|++.+..      .+..      ...+++++++++|+|+.++  |.+ .
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~  245 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-K  245 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-C
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-C
Confidence            99999999999999999999999999999999987542      1211      1235778889999999977  444 6


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcC--CCCccCHHHHHHHHHhCCceEEEccCCCC-CCCC-CcccCCCCcEE--EcCCCCC
Q 021361          209 THHIVNRKVIDALGPSGILINIG--RGAHIDEPELVSALLEGRLAGAGLDVYEN-EPEV-PEQMLGLNNVV--LLPHVGS  282 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~--rg~~vd~~al~~al~~g~~~ga~lDV~~~-EP~~-~~~l~~~pnvi--~TPHia~  282 (313)
                      +.++++++.++.||+|+++||+|  +|+                      ||+. ||.+ +.|++..+|++  +|||+++
T Consensus       246 t~~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i~~~phl~~  303 (377)
T 2vhw_A          246 APKLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLFYCVANMPA  303 (377)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEEECBTTGGG
T ss_pred             CcceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEEEecCCcch
Confidence            78899999999999999999999  432                      6777 8864 45899999998  9999999


Q ss_pred             CcHHHH---------HHHHHHHHHHH-HHHHcCCCCCCC
Q 021361          283 DTEETS---------KAMADLVIENL-VAHFSNKPLLTP  311 (313)
Q Consensus       283 ~t~~~~---------~~~~~~~~~ni-~~~~~g~~~~~~  311 (313)
                      .+....         ..+.+++.++. ..+..++++.+.
T Consensus       304 ~~~~~as~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~  342 (377)
T 2vhw_A          304 SVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKG  342 (377)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCChhhhhhcChHHhCc
Confidence            887632         22333444443 255555555443

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.83  E-value=7.8e-22  Score=188.81  Aligned_cols=155  Identities=18%  Similarity=0.220  Sum_probs=125.2

Q ss_pred             ccc-cCCCEEEEEcCChhHHHHHHHHHh-cCCcEEEECCCCcccccccccCCHHHHHhhCCe-eEEecCCChHhhhccCH
Q 021361          139 GSK-FSGKSVGIVGLGRIGTAIAKRVEA-FGCPISYHSRSEKSDANYKYYTNIIDLASNCQI-LIVACSLTEETHHIVNR  215 (313)
Q Consensus       139 ~~~-l~g~~vgiiG~G~iG~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDv-v~l~~p~~~~t~~~i~~  215 (313)
                      |.+ |+||+|||+|+|+||+.+|+++++ ||++|++++++....... ...+++++++.+|. .++ +|+ ++|++ |+.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~~-~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~  281 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNP-DGLNADEVLKWKNEHGSV-KDF-PGATN-ITN  281 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEE-EEECHHHHHHHHHHHSSS-TTC-TTSEE-ECH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccCc-cCCCHHHHHHHHHhcCEe-ecC-ccCee-eCH
Confidence            556 999999999999999999999999 999999985443221111 12367777775553 233 576 57787 798


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCC--cccCCCCcEEEcCCC----C--------
Q 021361          216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVP--EQMLGLNNVVLLPHV----G--------  281 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~--~~l~~~pnvi~TPHi----a--------  281 (313)
                      +.|..||+ .+|||++||++||+++ +++|+++.|.+++     +||+.+  ++|+..+||++|||+    |        
T Consensus       282 ~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E  354 (419)
T 1gtm_A          282 EELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFE  354 (419)
T ss_dssp             HHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHH
T ss_pred             HHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcceeeeeh
Confidence            89999988 5999999999999999 6999999999887     899765  389999999999999    5        


Q ss_pred             ---------CCcHHHHHHHHHHHHHHHHHHHc
Q 021361          282 ---------SDTEETSKAMADLVIENLVAHFS  304 (313)
Q Consensus       282 ---------~~t~~~~~~~~~~~~~ni~~~~~  304 (313)
                               +.+.+...++.+++.+|++++++
T Consensus       355 ~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~  386 (419)
T 1gtm_A          355 WVQNITGYYWTIEEVRERLDKKMTKAFYDVYN  386 (419)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence                     55677788899989999988874

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.82  E-value=1.9e-20  Score=177.20  Aligned_cols=272  Identities=17%  Similarity=0.159  Sum_probs=174.5

Q ss_pred             CCChHHHHHHHhc-CcEEE-ecC---CCcchhhHHh----------ccCCceEEEeeCCCCCCHHHhhcC-CCceEEEEc
Q 021361           11 PMSNYLEQELAAR-FTLFK-LWT---QSCKNKFFQE----------NSSAIRAVVGDTKCGADAELIDSL-PTLEIVASY   74 (313)
Q Consensus        11 ~~~~~~~~~l~~~-~~~~~-~~~---~~~~~~~l~~----------~~~~~~~i~~~~~~~~~~~~l~~~-~~Lk~i~~~   74 (313)
                      +++|+..++|.+. +++.. ...   .....+++.+          .+ ++|+|+... .++. +.++.+ |+++++...
T Consensus        17 ~l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~vk-~p~~-~~~~~l~~~~~~~~~~   93 (369)
T 2eez_A           17 ALTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKVK-EPLP-EEYGFLREGLILFTYL   93 (369)
T ss_dssp             SSCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECSS-CCCG-GGGGGCCTTCEEEECC
T ss_pred             CcCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEEC-CCCH-HHHhhcCCCcEEEEEe
Confidence            4678888888654 55432 100   1112222222          44 789888644 4444 446665 789999999


Q ss_pred             CCCCCcCChhhhhcCCcEEE---eCCCC-Cc----HHHHHHHH--HHHHHHhhchHHHHHHHHcCCCcCCCcccccccCC
Q 021361           75 SVGLDKIDLDKCKDKAVRVT---NTPDV-LT----DDVADLAV--GLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSG  144 (313)
Q Consensus        75 ~~G~d~id~~~~~~~gI~v~---n~~~~-~~----~~vAE~~l--~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g  144 (313)
                      ..+.|..+++++.++||.+.   +.+.. ..    .++++.+-  +.++++ +.+....  ..++.|...    ..++++
T Consensus        94 ~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~-~~l~~~~--~g~~~~~~~----~~~l~~  166 (369)
T 2eez_A           94 HLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGA-QFLEKPK--GGRGVLLGG----VPGVAP  166 (369)
T ss_dssp             CGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHH-HHTSGGG--TSCCCCTTC----BTBBCC
T ss_pred             cccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHH-HHHHHhc--CCCceecCC----CCCCCC
Confidence            99999999999999999998   44432 12    45555544  433333 2232210  011223211    246899


Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cccc------ccCCHHHHHhhCCeeEEecCCCh-Hhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYK------YYTNIIDLASNCQILIVACSLTE-ETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~------~~~~l~~l~~~aDvv~l~~p~~~-~t~~  211 (313)
                      ++|+|+|.|.||+.+++.++.+|++|+++|++++..      .+..      ...+++++++++|+|+.+++.+. .+..
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~  246 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPK  246 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------C
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccch
Confidence            999999999999999999999999999999986532      1111      12356778899999999998765 5778


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC-CcccCCCCcEE---------EcCCCC
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV-PEQMLGLNNVV---------LLPHVG  281 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~-~~~l~~~pnvi---------~TPHia  281 (313)
                      ++.++.++.||+|+++||+|-.             .|   |+ +|++  ||.. +.|++..+++.         +|||+|
T Consensus       247 li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~a  307 (369)
T 2eez_A          247 LVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTS  307 (369)
T ss_dssp             CSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGGSHHHH
T ss_pred             hHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHH
Confidence            8899999999999999999821             12   44 8998  5543 45788889999         889988


Q ss_pred             CC--cHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021361          282 SD--TEETSKAMADLVIENLVAHFSNKPLLTP  311 (313)
Q Consensus       282 ~~--t~~~~~~~~~~~~~ni~~~~~g~~~~~~  311 (313)
                      +.  +.+.+..+.+.+.++++.++.++++.+.
T Consensus       308 s~~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~  339 (369)
T 2eez_A          308 TFALTNQTLPYVLKLAEKGLDALLEDAALLKG  339 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHSCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcChhhhhcChHHhcC
Confidence            84  5566788889998888888887765544

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.75  E-value=2.2e-18  Score=164.62  Aligned_cols=185  Identities=13%  Similarity=0.233  Sum_probs=130.2

Q ss_pred             ceEEEeeCCCCCCHHHhhcC-CCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHH--
Q 021361           46 IRAVVGDTKCGADAELIDSL-PTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEF--  122 (313)
Q Consensus        46 ~~~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~--  122 (313)
                      +|+++... .+ +++.++.+ |++++|+..+.|+|+.|++++.++||.+.+.     +.|+|++.++.|.+++.....  
T Consensus        73 adiil~vk-~p-~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~~-----e~v~~~~~a~~l~~l~~~a~~ag  145 (401)
T 1x13_A           73 SEIILKVN-AP-LDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAM-----DSVPRISRAQSLDALSSMANIAG  145 (401)
T ss_dssp             SSEEECSS-CC-CHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEEG-----GGCCCSGGGGGGCHHHHHHHHHH
T ss_pred             CCeEEEeC-CC-CHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEEe-----ehhhhhhhhcccchHHHHHHHHH
Confidence            88888643 33 57778886 7899999999999999999999999999754     334444444322222221111  


Q ss_pred             HHHHHcC-----CCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccC-----
Q 021361          123 DEFVKSG-----KWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYT-----  187 (313)
Q Consensus       123 ~~~~~~~-----~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~-----  187 (313)
                      +..++.+     .|.........++.|++|+|+|+|.||..+++.++.+|++|+++|+++...     .+.....     
T Consensus       146 ~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~  225 (401)
T 1x13_A          146 YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE  225 (401)
T ss_dssp             HHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC----
T ss_pred             HHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccc
Confidence            1122222     221100000115889999999999999999999999999999999987532     2222111     


Q ss_pred             ----------------------CHHHHHhhCCeeEEe--cCCChHhhhccCHHHHhhcCCCcEEEEcC--CCCccCH
Q 021361          188 ----------------------NIIDLASNCQILIVA--CSLTEETHHIVNRKVIDALGPSGILINIG--RGAHIDE  238 (313)
Q Consensus       188 ----------------------~l~~l~~~aDvv~l~--~p~~~~t~~~i~~~~l~~mk~ga~~in~~--rg~~vd~  238 (313)
                                            +++++++++|+|+.+  +|.. .+..+++++.++.||+|+++||+|  ||+.+++
T Consensus       226 ~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          226 EAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             ----CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             cccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence                                  367888899999998  4432 355788999999999999999999  8887765

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.71  E-value=1.9e-17  Score=157.99  Aligned_cols=152  Identities=16%  Similarity=0.240  Sum_probs=116.6

Q ss_pred             EcCCCCCcCC-hhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEc
Q 021361           73 SYSVGLDKID-LDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVG  151 (313)
Q Consensus        73 ~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG  151 (313)
                      -+++|+..+. +.+..+.+|+|.|++........+...+..-++.+.+.    +.           .+.++.|++|||+|
T Consensus       154 eTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~----ra-----------tg~~L~GktVgIiG  218 (436)
T 3h9u_A          154 ETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIK----RA-----------TDVMIAGKTACVCG  218 (436)
T ss_dssp             CSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH----HH-----------HCCCCTTCEEEEEC
T ss_pred             ccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHH----Hh-----------cCCcccCCEEEEEe
Confidence            3677776652 33456799999999876555544444443333333221    11           24579999999999


Q ss_pred             CChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcE
Q 021361          152 LGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGI  226 (313)
Q Consensus       152 ~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~  226 (313)
                      +|.||+.+|++|+++|++|+++|+++...     .++. ..++++++++||+|++    ++.+.++|+++.|++||+|++
T Consensus       219 ~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~-~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~gAI  293 (436)
T 3h9u_A          219 YGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQ-VLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRDDAI  293 (436)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCTTEE
T ss_pred             eCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCe-ecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCCCcE
Confidence            99999999999999999999999987432     2222 4589999999999997    346789999999999999999


Q ss_pred             EEEcCCCCc-cCHHHHHHH
Q 021361          227 LINIGRGAH-IDEPELVSA  244 (313)
Q Consensus       227 ~in~~rg~~-vd~~al~~a  244 (313)
                      |||+|||.+ +|.++|.+.
T Consensus       294 VINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          294 VCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             EEECSSSGGGBCHHHHHHH
T ss_pred             EEEeCCCCCccCHHHHHhh
Confidence            999999997 999999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.69  E-value=2e-16  Score=150.27  Aligned_cols=220  Identities=9%  Similarity=0.129  Sum_probs=143.6

Q ss_pred             CCChHHHHHHHhc-CcEEEecCC-----CcchhhHH-----------hccCCceEEEeeCCCCC----CHHHhhcCC-Cc
Q 021361           11 PMSNYLEQELAAR-FTLFKLWTQ-----SCKNKFFQ-----------ENSSAIRAVVGDTKCGA----DAELIDSLP-TL   68 (313)
Q Consensus        11 ~~~~~~~~~l~~~-~~~~~~~~~-----~~~~~~l~-----------~~~~~~~~i~~~~~~~~----~~~~l~~~~-~L   68 (313)
                      +++|+..++|.+. +.+. ....     ....+.+.           +.++++|+|+... .++    +++.++.++ .+
T Consensus        17 ~l~P~~v~~L~~~G~~V~-ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v~-~p~~~~~~~~~i~~l~~~~   94 (384)
T 1l7d_A           17 AISPEVVKKLVGLGFEVI-VEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQ-RPMTAEEGTDEVALIKEGA   94 (384)
T ss_dssp             SCCHHHHHHHHHTTCEEE-EETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEE-CCCCGGGSCCGGGGSCTTC
T ss_pred             CCCHHHHHHHHhCCCEEE-EEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEec-CcccccCCHHHHHhhccCC
Confidence            4788888888764 4442 2111     11122222           3457899988753 455    788899886 59


Q ss_pred             eEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcC----CCcccc-cccC
Q 021361           69 EIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKN----GHFELG-SKFS  143 (313)
Q Consensus        69 k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~----~~~~~~-~~l~  143 (313)
                      +++.....+.|+.+++++.++||.+++... ..+.+++..+. +|+..+.+ ..+..+..+.|..    .....+ .++.
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~-~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~  171 (384)
T 1l7d_A           95 VLMCHLGALTNRPVVEALTKRKITAYAMEL-MPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGTVP  171 (384)
T ss_dssp             EEEEECCGGGCHHHHHHHHHTTCEEEEGGG-CCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEEEC
T ss_pred             EEEEEecccCCHHHHHHHHHCCCEEEEecc-ccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCCCC
Confidence            999999999999999999999999998421 11111122222 22222221 1111222222210    000011 3689


Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cccccc---C--------------------------CH
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYY---T--------------------------NI  189 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~---~--------------------------~l  189 (313)
                      |++|+|+|+|.+|..+++.++.+|++|+++|+++...     .+....   .                          .+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l  251 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV  251 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHH
Confidence            9999999999999999999999999999999987532     222211   0                          16


Q ss_pred             HHHHhhCCeeEEec--CCChHhhhccCHHHHhhcCCCcEEEEcC--CCCcc
Q 021361          190 IDLASNCQILIVAC--SLTEETHHIVNRKVIDALGPSGILINIG--RGAHI  236 (313)
Q Consensus       190 ~~l~~~aDvv~l~~--p~~~~t~~~i~~~~l~~mk~ga~~in~~--rg~~v  236 (313)
                      +++++++|+|+.++  |.. .+.++++++.++.||+|+++||++  ||+.+
T Consensus       252 ~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~  301 (384)
T 1l7d_A          252 LKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  301 (384)
T ss_dssp             HHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             HHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCe
Confidence            77888999999877  332 245678899999999999999999  77643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.68  E-value=9.2e-17  Score=153.09  Aligned_cols=151  Identities=15%  Similarity=0.187  Sum_probs=113.0

Q ss_pred             EcCCCCCcCC-hhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEc
Q 021361           73 SYSVGLDKID-LDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVG  151 (313)
Q Consensus        73 ~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG  151 (313)
                      -+++|+-.+- ....-...+++.|+.+.    +..+-+-....+.+.+.....+.           .+.++.||++||+|
T Consensus       190 eTtTGv~rL~~m~~~g~L~~PvinVnds----~tK~~fDn~yG~~eslvdgI~Ra-----------tg~~L~GKTVgVIG  254 (464)
T 3n58_A          190 ETTTGVNRLYQLQKKGLLPFPAINVNDS----VTKSKFDNKYGCKESLVDGIRRG-----------TDVMMAGKVAVVCG  254 (464)
T ss_dssp             CSHHHHHHHHHHHHHTCCCSCEEECTTS----HHHHTTHHHHHHHHHHHHHHHHH-----------HCCCCTTCEEEEEC
T ss_pred             ccccchHHHHHHHHcCCCCCCEEeeccH----hhhhhhhhhhcchHHHHHHHHHh-----------cCCcccCCEEEEEC
Confidence            3677776642 22334567899998654    44554444444444333222111           24679999999999


Q ss_pred             CChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcE
Q 021361          152 LGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGI  226 (313)
Q Consensus       152 ~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~  226 (313)
                      +|.||+.+|+++++||++|+++++.+...     .++. ..++++++++||+|+++.    .+.++|+++.|++||+|++
T Consensus       255 ~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~-vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GAI  329 (464)
T 3n58_A          255 YGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFE-VVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMCI  329 (464)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTEE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCce-eccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCeE
Confidence            99999999999999999999999876432     2333 358999999999999864    4688999999999999999


Q ss_pred             EEEcCCCCc-cCHHHHHH
Q 021361          227 LINIGRGAH-IDEPELVS  243 (313)
Q Consensus       227 ~in~~rg~~-vd~~al~~  243 (313)
                      |||+|||.. +|.++|.+
T Consensus       330 LINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          330 VGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             EEECSSSTTTBTCGGGTT
T ss_pred             EEEcCCCCcccCHHHHHh
Confidence            999999998 99999874

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.67  E-value=2.8e-18  Score=164.22  Aligned_cols=208  Identities=14%  Similarity=0.252  Sum_probs=157.5

Q ss_pred             CCceEEEEcCCCCCcCChhhhh-----cCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC--ccc
Q 021361           66 PTLEIVASYSVGLDKIDLDKCK-----DKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH--FEL  138 (313)
Q Consensus        66 ~~Lk~i~~~~~G~d~id~~~~~-----~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~--~~~  138 (313)
                      +.+++|+..++|+|++++.+..     ++++.++|.+|. ..+++++.+.+++.+.|++..... ...+.|....  ...
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~-~~~~~~s~a~~av~~  157 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETR-ISEGAVSIGSAAVEL  157 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSS-TTCSCCSHHHHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhh-hcCCCccHHHHHHHH
Confidence            4688899999999999998876     788999998887 568999999999999998865432 2234453100  001


Q ss_pred             c----cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc------ccccc--cCCHHHHHhhCCeeEEecCC
Q 021361          139 G----SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD------ANYKY--YTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       139 ~----~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~------~~~~~--~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .    .++.|++|+|||+|.||+.+++.|+.+|+ +|++++|+.++.      .+...  ..++.+++.++|+|+.|+|.
T Consensus       158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~  237 (404)
T 1gpj_A          158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA  237 (404)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred             HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence            1    14799999999999999999999999999 899999987542      12221  24678888999999999875


Q ss_pred             ChHhhhccCHHHHhh--cC----CCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC-CcccCCCCcEEE--
Q 021361          206 TEETHHIVNRKVIDA--LG----PSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV-PEQMLGLNNVVL--  276 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~--mk----~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~-~~~l~~~pnvi~--  276 (313)
                      +   ..+++.+.++.  ||    ++.++||++                             +|.. +.+++++|||++  
T Consensus       238 ~---~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d  285 (404)
T 1gpj_A          238 P---HPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRT  285 (404)
T ss_dssp             S---SCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEE
T ss_pred             C---CceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEe
Confidence            3   45677777776  42    456677665                             3543 457999999999  


Q ss_pred             cCCCCCCcHHHHH----------HHHHHHHHHHHHHHcCCC
Q 021361          277 LPHVGSDTEETSK----------AMADLVIENLVAHFSNKP  307 (313)
Q Consensus       277 TPHia~~t~~~~~----------~~~~~~~~ni~~~~~g~~  307 (313)
                      +||+++.+.++.+          .+....++++..|+.+.+
T Consensus       286 ~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~  326 (404)
T 1gpj_A          286 IDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLK  326 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999998887654          567777888888887654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.60  E-value=1.9e-15  Score=143.91  Aligned_cols=150  Identities=20%  Similarity=0.319  Sum_probs=110.5

Q ss_pred             EcCCCCCcC-ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEc
Q 021361           73 SYSVGLDKI-DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVG  151 (313)
Q Consensus        73 ~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG  151 (313)
                      -+++|+-.+ .....-+..++|.|..+....+--|..-+.--++...+.+    .           .+..+.|++|+|+|
T Consensus       163 eTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi~r----a-----------t~~~L~GktV~ViG  227 (435)
T 3gvp_A          163 ESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKR----T-----------TDMMFGGKQVVVCG  227 (435)
T ss_dssp             CCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHH----H-----------HCCCCTTCEEEEEC
T ss_pred             ccchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHHHHHHH----h-----------hCceecCCEEEEEe
Confidence            367777654 2233345789999998865555444333322222222211    0           24578999999999


Q ss_pred             CChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcE
Q 021361          152 LGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGI  226 (313)
Q Consensus       152 ~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~  226 (313)
                      +|.||+.+|++|++||++|+++|+++...     .++. ..++++++++||+|+++    +.|.++|+++.|+.||+|++
T Consensus       228 ~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~-v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~gai  302 (435)
T 3gvp_A          228 YGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFR-LVKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNSCI  302 (435)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTTEE
T ss_pred             eCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCE-eccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCCcE
Confidence            99999999999999999999999876421     2222 46899999999999995    46788999999999999999


Q ss_pred             EEEcCCCCc-cCHHHHH
Q 021361          227 LINIGRGAH-IDEPELV  242 (313)
Q Consensus       227 ~in~~rg~~-vd~~al~  242 (313)
                      |||+|||+. +|.++|.
T Consensus       303 lINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          303 VCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             EEECSSTTTTBTGGGGC
T ss_pred             EEEecCCCccCCHHHHH
Confidence            999999998 7877764

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.46  E-value=7.4e-14  Score=128.32  Aligned_cols=111  Identities=16%  Similarity=0.244  Sum_probs=97.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKV  217 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~  217 (313)
                      ++|||||+|.||..||++|...|++|++|||++++.     .+.....++.|+++.||+|++|+|..+..+.++.  ...
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            589999999999999999999999999999998653     3556678999999999999999999988888763  347


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV  257 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV  257 (313)
                      ++.+++|.++||++...+-+...+.+.+++..+.  .+|.
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            8889999999999999999999999999998887  5664

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.44  E-value=1.8e-13  Score=125.50  Aligned_cols=111  Identities=15%  Similarity=0.218  Sum_probs=94.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      +||||||+|.||..||+.|...|++|++|||++++.     .+.....++.|++++||+|++|+|..+..+..+....+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            589999999999999999999999999999988653     244557899999999999999999888888888888999


Q ss_pred             hcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361          220 ALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV  257 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV  257 (313)
                      .++++.++|+++...+-+.+.+.+.+.+..+.  .+|.
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda  121 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA  121 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence            99999999999999999999999999998887  4553

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.39  E-value=3.2e-13  Score=125.00  Aligned_cols=113  Identities=12%  Similarity=0.185  Sum_probs=95.8

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      ....++|||||+|.||..+|+.|...|++|.+|||+++..     .+.....++++++++||+|++++|....++.++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            3456799999999999999999999999999999987542     24455679999999999999999987777777653


Q ss_pred             -HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 021361          216 -KVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGA  253 (313)
Q Consensus       216 -~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga  253 (313)
                       +.++.+++|.++||++++.+.+.+.+.+.+.+..+...
T Consensus       108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~  146 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHL  146 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEE
Confidence             56778999999999999999999999999988776633

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.39  E-value=5.6e-13  Score=122.65  Aligned_cols=112  Identities=15%  Similarity=0.136  Sum_probs=95.4

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      .++..++|||||+|.||+.+|+.|...|++|.+|||+++..     .+.....++++++++||+|++++|.+..++.++.
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            34567899999999999999999999999999999987642     2344567999999999999999998777888775


Q ss_pred             HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          215 RKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+.+..+++|.++||++++.+.+.+.+.+.+.+..+.
T Consensus        85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~  121 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH  121 (306)
T ss_dssp             STTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred             ccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            3345668899999999999999999999999887665

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.38  E-value=1.1e-12  Score=120.90  Aligned_cols=113  Identities=14%  Similarity=0.141  Sum_probs=94.7

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      .+..+-++|||||+|.||..+|+.|...|++|.+|||+++..     .+.....++++++++||+|++++|....++.++
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~   95 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV   95 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence            344556799999999999999999999999999999987653     234456789999999999999999877777766


Q ss_pred             --CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          214 --NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       214 --~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                        ..+.+..+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        96 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence              24567789999999999999999999999999887665

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.37  E-value=5.4e-12  Score=116.58  Aligned_cols=161  Identities=17%  Similarity=0.171  Sum_probs=104.3

Q ss_pred             HcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccc-----ccc--cccCCHHH-HHhhC
Q 021361          127 KSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSD-----ANY--KYYTNIID-LASNC  196 (313)
Q Consensus       127 ~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~-----~~~--~~~~~l~~-l~~~a  196 (313)
                      ..+.|.+...+...++.-++|||||+|.||+.+|+.|+..|+  +|++|||+++..     .+.  ....++++ ++++|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~a   95 (314)
T 3ggo_A           16 PRGSHMKNIIKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSP   95 (314)
T ss_dssp             -------------CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCC
T ss_pred             ccccCcCcCCchhhhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccC
Confidence            344565433333344556899999999999999999999999  899999987532     222  23467888 89999


Q ss_pred             CeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC---C-CcccCCCC
Q 021361          197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE---V-PEQMLGLN  272 (313)
Q Consensus       197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~---~-~~~l~~~p  272 (313)
                      |+|++|+|... +..++ ++....+++++++++++.......+++.+.+.. ++.+. --++..|-.   . ...|+.-.
T Consensus        96 DvVilavp~~~-~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~-hPm~G~e~sG~~~A~~~Lf~g~  171 (314)
T 3ggo_A           96 DFVMLSSPVRT-FREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGG-HPIAGTEKSGVEYSLDNLYEGK  171 (314)
T ss_dssp             SEEEECSCGGG-HHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECE-EECCCCCCCSGGGCCTTTTTTC
T ss_pred             CEEEEeCCHHH-HHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEec-CcccCCcccchhhhhhhhhcCC
Confidence            99999999653 44444 556778999999999988776556677776654 33221 223443321   1 12577888


Q ss_pred             cEEEcCCCCCCcHHHHHHHH
Q 021361          273 NVVLLPHVGSDTEETSKAMA  292 (313)
Q Consensus       273 nvi~TPHia~~t~~~~~~~~  292 (313)
                      .+++||+- +.+.+..+.+.
T Consensus       172 ~~il~~~~-~~~~~~~~~v~  190 (314)
T 3ggo_A          172 KVILTPTK-KTDKKRLKLVK  190 (314)
T ss_dssp             EEEECCCT-TSCHHHHHHHH
T ss_pred             EEEEEeCC-CCCHHHHHHHH
Confidence            89999983 34555554433

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.35  E-value=3.7e-12  Score=117.46  Aligned_cols=136  Identities=10%  Similarity=0.142  Sum_probs=92.6

Q ss_pred             HHHcCCCc-CCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC--cc-----cccccccCCHHHHHhh
Q 021361          125 FVKSGKWK-NGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE--KS-----DANYKYYTNIIDLASN  195 (313)
Q Consensus       125 ~~~~~~w~-~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~--~~-----~~~~~~~~~l~~l~~~  195 (313)
                      ..+.+.|. +.+++......-++|||||+|.||..+|+.|...|+ +|.+|||++  +.     ..+.....++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~   83 (312)
T 3qsg_A            4 HHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGE   83 (312)
T ss_dssp             ---------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHH
T ss_pred             ccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhc
Confidence            44566665 333443334456799999999999999999999999 999999973  22     1244556789999999


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEccCCCCCC
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG--RLAGAGLDVYENEP  262 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g--~~~ga~lDV~~~EP  262 (313)
                      ||+|++++|.....+ .+ .+..+.++++.++||+++.......++.+.+.+.  .+....--|+.++|
T Consensus        84 aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~  150 (312)
T 3qsg_A           84 CDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVK  150 (312)
T ss_dssp             CSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCST
T ss_pred             CCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCch
Confidence            999999999876655 23 5677889999999999999999999999998875  44422222555444

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.33  E-value=2.5e-12  Score=117.71  Aligned_cols=108  Identities=14%  Similarity=0.216  Sum_probs=93.0

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      .++|||||+|.||..+|+.|...|++|.+|||+++..     .+.....+++++++ ||+|++++|.+..++..+ .+.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            3589999999999999999999999999999988653     23455679999999 999999999877777777 6678


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGA  253 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga  253 (313)
                      +.+++|.++||+++..+...+.+.+.+.+..+...
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~  127 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIHIV  127 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEE
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEE
Confidence            88999999999999999999999999987666533

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.32  E-value=3.3e-12  Score=116.16  Aligned_cols=107  Identities=15%  Similarity=0.315  Sum_probs=92.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhcc--CHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIV--NRKV  217 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i--~~~~  217 (313)
                      ++|||||+|.||+.+|+.|...|++|.+|||+++..     .+.....++++++++||+|++|+|.+..++..+  .++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            589999999999999999999999999999987653     234556799999999999999999777777766  2456


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ++.+++|.++||+++..+.+.+.+.+.+.+..+.
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            7889999999999999999999999999887665

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.32  E-value=3.7e-12  Score=119.73  Aligned_cols=117  Identities=13%  Similarity=0.242  Sum_probs=97.7

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhC---CeeEEecCCChHhhhcc
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNC---QILIVACSLTEETHHIV  213 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~a---Dvv~l~~p~~~~t~~~i  213 (313)
                      +++++|||||+|.||..+|+.|...|++|.+|||+++..     .+.....+++++++++   |+|++++|.. .++.++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            567899999999999999999999999999999987542     2344567999999999   9999999977 777776


Q ss_pred             CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCC
Q 021361          214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYEN  260 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~  260 (313)
                       .+.+..+++|.+|||++++...+...+.+.+.+..+......|+..
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence             4677889999999999999999999999999988777444445444

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.31  E-value=3.2e-12  Score=116.28  Aligned_cols=107  Identities=14%  Similarity=0.237  Sum_probs=91.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhcc--CHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIV--NRKV  217 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i--~~~~  217 (313)
                      ++|||||+|.||..+|+.|...|++|.+|||+++..     .+.....++++++++||+|++++|.+..++..+  ..+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            479999999999999999999999999999987653     234456799999999999999999776777766  2456


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ++.+++|.++||++++.+...+.+.+.+.+..+.
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            7789999999999999999999999999886665

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.25  E-value=4.1e-12  Score=116.57  Aligned_cols=108  Identities=18%  Similarity=0.186  Sum_probs=91.4

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc-cCCHHHHHhhCCeeEEecCCChHhhhccC--H
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY-YTNIIDLASNCQILIVACSLTEETHHIVN--R  215 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~-~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~  215 (313)
                      .++|||||+|.||..+|+.|...|++|.+|||+++..     .+... ..++++++++||+|++++|.+..++.++.  +
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            4689999999999999999999999999999987542     23344 57899999999999999998777777663  4


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +.++.+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            567789999999999999998889999999886655

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.25  E-value=2.3e-11  Score=110.03  Aligned_cols=141  Identities=18%  Similarity=0.174  Sum_probs=100.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccc-----cccc--ccCCHHHHHh-hCCeeEEecCCChHhhhccC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSD-----ANYK--YYTNIIDLAS-NCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~-----~~~~--~~~~l~~l~~-~aDvv~l~~p~~~~t~~~i~  214 (313)
                      ++|||||+|.||+.+|+.|+..|+  +|++||++++..     .+..  ...+++++++ +||+|++++|.. .+..++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence            489999999999999999999998  899999986532     1221  2457888898 999999999964 4455554


Q ss_pred             HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCC----CcccCCCCcEEEcCCCCCCcHHHHHH
Q 021361          215 RKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEV----PEQMLGLNNVVLLPHVGSDTEETSKA  290 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~----~~~l~~~pnvi~TPHia~~t~~~~~~  290 (313)
                       +....+++++++++++++.....+.+.+.+.++-+.  ..-++..|...    ..+++..++++++||.++. .+..+.
T Consensus        81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~--~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~-~~~~~~  156 (281)
T 2g5c_A           81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KKRLKL  156 (281)
T ss_dssp             -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC-HHHHHH
T ss_pred             -HHHhhCCCCcEEEECCCCcHHHHHHHHHhcccccee--eccccCCccCChhhhhhHHhCCCCEEEecCCCCC-HHHHHH
Confidence             466778999999999988876677788888764111  12234333211    1257777889999997654 444433

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.25  E-value=4.3e-11  Score=108.72  Aligned_cols=136  Identities=13%  Similarity=0.162  Sum_probs=100.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc------------------------------ccccCCHHHHHh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN------------------------------YKYYTNIIDLAS  194 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~------------------------------~~~~~~l~~l~~  194 (313)
                      ++|+|||.|.||..+|+.+...|++|++||++++....                              .....+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            68999999999999999999999999999998753110                              123468889999


Q ss_pred             hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcE
Q 021361          195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNV  274 (313)
Q Consensus       195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnv  274 (313)
                      +||+|+.++|.+.+.+..+-++..+.+++++++++.+.+  +..+.+.+.+.... ..+++..|.       |.+..+.+
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~~-~~ig~h~~~-------p~~~~~lv  154 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRGD-KFLALHFAN-------HVWVNNTA  154 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCGG-GEEEEEECS-------STTTSCEE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCCc-ceEEEccCC-------CcccCceE
Confidence            999999999998777776667788889999999965544  45677887775432 234444442       34566778


Q ss_pred             EEcCCCCCCcHHHHHHH
Q 021361          275 VLLPHVGSDTEETSKAM  291 (313)
Q Consensus       275 i~TPHia~~t~~~~~~~  291 (313)
                      .++||- ..+.+..+..
T Consensus       155 evv~~~-~t~~~~~~~~  170 (283)
T 4e12_A          155 EVMGTT-KTDPEVYQQV  170 (283)
T ss_dssp             EEEECT-TSCHHHHHHH
T ss_pred             EEEeCC-CCCHHHHHHH
Confidence            889983 3444444433

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.22  E-value=2.3e-10  Score=107.79  Aligned_cols=213  Identities=10%  Similarity=0.125  Sum_probs=127.7

Q ss_pred             CCChHHHHHHHhc-CcEEEecCC----C-cchhhHHh-------ccCCceEEEeeCCCCCCHHHhhcCCC-ceEEEEcCC
Q 021361           11 PMSNYLEQELAAR-FTLFKLWTQ----S-CKNKFFQE-------NSSAIRAVVGDTKCGADAELIDSLPT-LEIVASYSV   76 (313)
Q Consensus        11 ~~~~~~~~~l~~~-~~~~~~~~~----~-~~~~~l~~-------~~~~~~~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~   76 (313)
                      +++|+..++|.+. +++. ....    . .+++++.+       .++ +|+|+.-..  .+++.++.++. -.++...-.
T Consensus        39 altP~~v~~L~~~G~~V~-VE~gaG~~~~f~D~~Y~~aGa~i~~~~~-adiIlkVk~--p~~~e~~~l~~g~~l~~~lh~  114 (381)
T 3p2y_A           39 ALVPKVVEKLSARGLEVV-VESAAGAGALFSDADYERAGATIGDPWP-ADVVVKVNP--PTSDEISQLKPGSVLIGFLAP  114 (381)
T ss_dssp             SSCHHHHHHHHHTTCEEE-ECTTTTGGGTCCHHHHHHTTCEESCCTT-SSEEECSSC--CCHHHHTTSCTTCEEEECCCT
T ss_pred             cCCHHHHHHHHhCCCEEE-EeCCCCccCCCChHHHHHCCCEEeeeec-CCEEEEeCC--CChhHHhhccCCCEEEEEecc
Confidence            3678888887654 5443 2221    1 12233222       223 677776432  24666777654 445554444


Q ss_pred             CCCcCChhhhhcCCcEEEeCCCCC----c------HHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCE
Q 021361           77 GLDKIDLDKCKDKAVRVTNTPDVL----T------DDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKS  146 (313)
Q Consensus        77 G~d~id~~~~~~~gI~v~n~~~~~----~------~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~  146 (313)
                      -.|.=-++++.++||...--.-..    +      .+.+|.+=.+....        ....-++....-......+.+++
T Consensus       115 ~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~Av~~--------aa~~l~~~~~~l~~~~~~v~~~k  186 (381)
T 3p2y_A          115 RTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKAVLL--------GASLSTRFVPMLTTAAGTVKPAS  186 (381)
T ss_dssp             TTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHHHHH--------HHHHCSSCSSCEECSSCEECCCE
T ss_pred             ccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHHHHH--------HHHHhhhhhhhhhcccCCcCCCE
Confidence            444434578889999886532211    1      23333332111110        01111111100000123679999


Q ss_pred             EEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc-------------------------cCCHHHHHhhC
Q 021361          147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY-------------------------YTNIIDLASNC  196 (313)
Q Consensus       147 vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~-------------------------~~~l~~l~~~a  196 (313)
                      |+|||+|.||..+++.++++|++|+++|+++...     .+.++                         ..++++.++++
T Consensus       187 V~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~a  266 (381)
T 3p2y_A          187 ALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKF  266 (381)
T ss_dssp             EEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTC
T ss_pred             EEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcC
Confidence            9999999999999999999999999999987532     11111                         12577899999


Q ss_pred             CeeEEec--CCChHhhhccCHHHHhhcCCCcEEEEcC--CCCcc
Q 021361          197 QILIVAC--SLTEETHHIVNRKVIDALGPSGILINIG--RGAHI  236 (313)
Q Consensus       197 Dvv~l~~--p~~~~t~~~i~~~~l~~mk~ga~~in~~--rg~~v  236 (313)
                      |+|+.++  |.. .+..+++++.++.||||+++||++  +|+.+
T Consensus       267 DIVI~tv~iPg~-~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          267 DIVITTALVPGR-PAPRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             SEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             CEEEECCCCCCc-ccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence            9999876  432 345689999999999999999997  55443

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.22  E-value=4.5e-11  Score=109.42  Aligned_cols=136  Identities=18%  Similarity=0.167  Sum_probs=90.0

Q ss_pred             HHHHHHHcCCCcCCCcccccccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCee
Q 021361          121 EFDEFVKSGKWKNGHFELGSKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL  199 (313)
Q Consensus       121 ~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv  199 (313)
                      +++..+++..|.... +     ..++||||| +|.||..+|+.|+..|++|.+++|+..        .+..+.+++||+|
T Consensus         4 ~~~~~~~~~~~~~~~-~-----~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~--------~~~~~~~~~aDvV   69 (298)
T 2pv7_A            4 ESYANENQFGFKTIN-S-----DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW--------AVAESILANADVV   69 (298)
T ss_dssp             ---------CCCCSC-T-----TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG--------GGHHHHHTTCSEE
T ss_pred             hHHhhhhccCccccC-C-----CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc--------cCHHHHhcCCCEE
Confidence            444556667786311 1     246899999 999999999999999999999998764        2577889999999


Q ss_pred             EEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCC--CCcccCCCCcEEEc
Q 021361          200 IVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPE--VPEQMLGLNNVVLL  277 (313)
Q Consensus       200 ~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~--~~~~l~~~pnvi~T  277 (313)
                      ++++|... +..++. +....++++++++++++......+++.+.+   ..     ++....|.  +..+++....++++
T Consensus        70 ilavp~~~-~~~vl~-~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~-----~~v~~hP~~g~~~~~~~g~~~~l~  139 (298)
T 2pv7_A           70 IVSVPINL-TLETIE-RLKPYLTENMLLADLTSVKREPLAKMLEVH---TG-----AVLGLHPMFGADIASMAKQVVVRC  139 (298)
T ss_dssp             EECSCGGG-HHHHHH-HHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SS-----EEEEEEECSCTTCSCCTTCEEEEE
T ss_pred             EEeCCHHH-HHHHHH-HHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CC-----CEEeeCCCCCCCchhhcCCeEEEe
Confidence            99999654 565654 456678999999999876654444444432   11     12222332  11245555679999


Q ss_pred             CCC
Q 021361          278 PHV  280 (313)
Q Consensus       278 PHi  280 (313)
                      ||-
T Consensus       140 ~~~  142 (298)
T 2pv7_A          140 DGR  142 (298)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            974

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.20  E-value=1.7e-10  Score=109.45  Aligned_cols=185  Identities=12%  Similarity=0.188  Sum_probs=114.3

Q ss_pred             cCCceEEEeeCCCCCCHHHhhcCC-CceEEEEcCCCCCcCChhhhhcCCcEEEeC---CCCC-c------HHHHHHHHHH
Q 021361           43 SSAIRAVVGDTKCGADAELIDSLP-TLEIVASYSVGLDKIDLDKCKDKAVRVTNT---PDVL-T------DDVADLAVGL  111 (313)
Q Consensus        43 ~~~~~~i~~~~~~~~~~~~l~~~~-~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~---~~~~-~------~~vAE~~l~~  111 (313)
                      +.++|+|+.-..+  +++.++.++ +-.++...-..-|.=-++++.++||...--   +... +      .+.+|.+=.+
T Consensus        88 ~~~adiIlkVk~p--~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~  165 (405)
T 4dio_A           88 AKTADVILKVRRP--SAQEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQ  165 (405)
T ss_dssp             GGGCSEEEEEECC--CTTTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHH
T ss_pred             hccCCEEEEeCCC--ChhHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHH
Confidence            3467888864433  244455554 445555544433443457888899988653   3211 1      1333333211


Q ss_pred             HHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc-
Q 021361          112 VLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY-  185 (313)
Q Consensus       112 ~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~-  185 (313)
                      ...      .  ....-++....-......+.+.+|+|||+|.+|..+++.++++|++|+++|+++...     .+..+ 
T Consensus       166 Av~------~--aa~~l~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~  237 (405)
T 4dio_A          166 AVI------D--AAYEYDRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFI  237 (405)
T ss_dssp             HHH------H--HHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEEC
T ss_pred             HHH------H--HHHHhHhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCcee
Confidence            110      0  011111111000001135789999999999999999999999999999999987531     11111 


Q ss_pred             ----------------------------cCCHHHHHhhCCeeEEec--CCChHhhhccCHHHHhhcCCCcEEEEcC--CC
Q 021361          186 ----------------------------YTNIIDLASNCQILIVAC--SLTEETHHIVNRKVIDALGPSGILINIG--RG  233 (313)
Q Consensus       186 ----------------------------~~~l~~l~~~aDvv~l~~--p~~~~t~~~i~~~~l~~mk~ga~~in~~--rg  233 (313)
                                                  ..++++++++||+|+.++  |.. ....+++++.++.||||+++||++  +|
T Consensus       238 ~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~G  316 (405)
T 4dio_A          238 AVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERG  316 (405)
T ss_dssp             CCCC-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGT
T ss_pred             ecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCC
Confidence                                        125788899999999875  432 356688999999999999999998  66


Q ss_pred             CccCH
Q 021361          234 AHIDE  238 (313)
Q Consensus       234 ~~vd~  238 (313)
                      +.+..
T Consensus       317 G~~e~  321 (405)
T 4dio_A          317 GNIEG  321 (405)
T ss_dssp             CSBTT
T ss_pred             CCccc
Confidence            65443

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.20  E-value=2.9e-11  Score=113.02  Aligned_cols=103  Identities=16%  Similarity=0.262  Sum_probs=86.9

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHh-hCCeeEEecCCChHhhhccC
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLAS-NCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~-~aDvv~l~~p~~~~t~~~i~  214 (313)
                      +|.||+|+|+|+|+||+.+|++++.+|++|+++|+.....     .+.+ ..+.++++. +||+++-|     .+.+.|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~-~v~~~ell~~~~DIliP~-----A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-AVALEDVLSTPCDVFAPC-----AMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCE-EeChHHhhcCccceecHh-----HHHhhcC
Confidence            6899999999999999999999999999999999875421     1222 236778887 89998743     5788999


Q ss_pred             HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          215 RKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+.++.|| ..+++|.+++++.++++ .++|+++++.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 78999999999999888 5999999886

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.19  E-value=3.3e-11  Score=111.35  Aligned_cols=115  Identities=9%  Similarity=0.063  Sum_probs=92.3

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCc-------cc-----ccccccC-CHHHHHhhCCeeEEecCCChHh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEK-------SD-----ANYKYYT-NIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~-------~~-----~~~~~~~-~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      -++|||||+|.||..+|+.|...| ++|.+|||+++       ..     .+.  .. ++.+++++||+|++++|.....
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~  101 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATK  101 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHH
Confidence            368999999999999999999999 99999999862       11     122  45 7889999999999999987666


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP  262 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP  262 (313)
                      +.+  .+.+..++++.++||+++..+...+.+.+.+.+..+....--|+.++|
T Consensus       102 ~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~  152 (317)
T 4ezb_A          102 AVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVP  152 (317)
T ss_dssp             HHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCST
T ss_pred             HHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCch
Confidence            544  667788999999999999999999999999988766532223555443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.18  E-value=2.4e-11  Score=118.26  Aligned_cols=114  Identities=14%  Similarity=0.212  Sum_probs=94.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc--------cc--cccCCHHHHHhh---CCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA--------NY--KYYTNIIDLASN---CQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~~--~~~~~l~~l~~~---aDvv~l~~p~~~~t~~  211 (313)
                      ++|||||+|.||..+|+.|...|++|.+|||+++...        +.  ....+++++++.   +|+|++++|....++.
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~   84 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDD   84 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHH
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHHH
Confidence            5799999999999999999999999999999886421        11  124789999874   9999999998888887


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE  259 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~  259 (313)
                      ++ .+.+..|++|.++||++++...+...+.+.+.+..+.....-|+.
T Consensus        85 vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           85 FI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             HH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             HH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            77 567888999999999999999999999999988877644434443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.18  E-value=9.1e-12  Score=111.99  Aligned_cols=163  Identities=13%  Similarity=0.098  Sum_probs=115.1

Q ss_pred             ceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHH
Q 021361           46 IRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEF  125 (313)
Q Consensus        46 ~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~  125 (313)
                      +..+.+  ..+..++++..++++.-++....|+|.++.    +.|-.    .+.+.+.     .+++.++.|        
T Consensus        54 ~~G~~v--t~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~~----~g~ntd~-----~g~~~~l~~--------  110 (263)
T 2d5c_A           54 FRGVNL--TLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGRL----FGFNTDA-----PGFLEALKA--------  110 (263)
T ss_dssp             CSEEEE--CTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEECCHH-----HHHHHHHHH--------
T ss_pred             CceEEE--cccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCeE----EEeCCCH-----HHHHHHHHH--------
Confidence            344444  346778899999999998999999999864    34422    2334433     244444332        


Q ss_pred             HHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------cccccCCHHHHHhhCCee
Q 021361          126 VKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------NYKYYTNIIDLASNCQIL  199 (313)
Q Consensus       126 ~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~~~~~~~l~~l~~~aDvv  199 (313)
                                  .+.+++| +++|||.|.||+.+++.|...|++|.+++|+.++..      +.. ..+++++ +++|+|
T Consensus       111 ------------~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Div  175 (263)
T 2d5c_A          111 ------------GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLL  175 (263)
T ss_dssp             ------------TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEE
T ss_pred             ------------hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEE
Confidence                        1235789 999999999999999999999999999999865321      112 3567788 999999


Q ss_pred             EEecCCCh--HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          200 IVACSLTE--ETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       200 ~l~~p~~~--~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ++++|...  .+...+.   .+.+++|.++++++.+.. +. .|.+++++..+.
T Consensus       176 i~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~~  224 (263)
T 2d5c_A          176 VNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGLK  224 (263)
T ss_dssp             EECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTCE
T ss_pred             EEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcCE
Confidence            99999763  2223443   466899999999998743 33 477777765543

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.13  E-value=1.2e-10  Score=113.60  Aligned_cols=109  Identities=17%  Similarity=0.281  Sum_probs=91.1

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----c----cccccCCHHHHHhh---CCeeEEecCCChHh
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----A----NYKYYTNIIDLASN---CQILIVACSLTEET  209 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~----~~~~~~~l~~l~~~---aDvv~l~~p~~~~t  209 (313)
                      ++-++|||||+|.||+.+|+.|...|++|.+|+|+++..     .    +.....++++++++   +|+|++++|....+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            456789999999999999999999999999999987532     1    34445789999987   99999999987778


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +.++. +....+++|.++||++.|...+.+.+.+.+.+..+.
T Consensus        93 ~~vl~-~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           93 DAAID-SLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             HHHHH-HHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            87774 577889999999999999988888898988876554

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.11  E-value=7.3e-11  Score=105.00  Aligned_cols=91  Identities=18%  Similarity=0.326  Sum_probs=67.4

Q ss_pred             cccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc--------------c------ccccccCCHHHHHhhCC
Q 021361          138 LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS--------------D------ANYKYYTNIIDLASNCQ  197 (313)
Q Consensus       138 ~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--------------~------~~~~~~~~l~~l~~~aD  197 (313)
                      ...++.+++|||||+|.||+.+|+.|...|++|++|||+++.              .      .+.....++.+++++||
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   92 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAE   92 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCS
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCC
Confidence            456899999999999999999999999999999999998764              1      11223467899999999


Q ss_pred             eeEEecCCChHhhhccCHHH-HhhcCCCcEEEEcC
Q 021361          198 ILIVACSLTEETHHIVNRKV-IDALGPSGILINIG  231 (313)
Q Consensus       198 vv~l~~p~~~~t~~~i~~~~-l~~mk~ga~~in~~  231 (313)
                      +|++++|...... .+. +. ...+ ++.++|+++
T Consensus        93 vVilavp~~~~~~-~~~-~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           93 LVVNATEGASSIA-ALT-AAGAENL-AGKILVDIA  124 (245)
T ss_dssp             EEEECSCGGGHHH-HHH-HHCHHHH-TTSEEEECC
T ss_pred             EEEEccCcHHHHH-HHH-Hhhhhhc-CCCEEEECC
Confidence            9999999765443 222 22 3344 799999999

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.10  E-value=8.6e-11  Score=106.99  Aligned_cols=107  Identities=20%  Similarity=0.353  Sum_probs=88.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKV  217 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~  217 (313)
                      .+|+|||+|.||+.+++.|...|++|.+|||+++..     .+.....+++++++++|+|++++|.+..++.++.  .+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            389999999999999999999999999999986532     2344457899999999999999997777777662  345


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+.+++|.++|+++.|...+.+.+.+.+.+..+.
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  119 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  119 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            6779999999999999887788899988775443

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.10  E-value=6.5e-11  Score=107.49  Aligned_cols=135  Identities=16%  Similarity=0.167  Sum_probs=95.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc--CCcEEEECCCCccc-----ccc--cccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF--GCPISYHSRSEKSD-----ANY--KYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~-----~~~--~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      ++|||||+|.||+.+|+.|...  |++|++||++++..     .+.  ....++++++++||+|++++|... ...++. 
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~~-   84 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFIK-   84 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHHH-
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHHH-
Confidence            5899999999999999999876  67899999986532     122  234577888899999999999543 344543 


Q ss_pred             HHHhh-cCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEcc---CCCC---CCCC-CcccCCCCcEEEcCCCCCC
Q 021361          216 KVIDA-LGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLD---VYEN---EPEV-PEQMLGLNNVVLLPHVGSD  283 (313)
Q Consensus       216 ~~l~~-mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lD---V~~~---EP~~-~~~l~~~pnvi~TPHia~~  283 (313)
                      +.... ++++.++++++++.....+.+.+.+.+....  .++   ++..   .|.. ..+++.-++++++||.++.
T Consensus        85 ~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~  158 (290)
T 3b1f_A           85 ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTK  158 (290)
T ss_dssp             HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCC
T ss_pred             HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCC
Confidence            35566 8999999999988776667888877652222  122   2222   2221 1357777889999987643

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.09  E-value=2e-10  Score=104.61  Aligned_cols=107  Identities=14%  Similarity=0.217  Sum_probs=88.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKV  217 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~  217 (313)
                      .+|||||+|.||+.+++.|...|++|.+|||+++..     .+.....+++++++++|+|++++|.+..++..+.  .+.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            589999999999999999999999999999986532     2344457899999999999999997777777774  356


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+.++++.++|++++|...+.+.+.+.+.+..+.
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~  118 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGID  118 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            6778999999999999877788898888775443

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.08  E-value=2.4e-10  Score=110.61  Aligned_cols=141  Identities=15%  Similarity=0.213  Sum_probs=100.5

Q ss_pred             cCCCCCcCC-hhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcC
Q 021361           74 YSVGLDKID-LDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGL  152 (313)
Q Consensus        74 ~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~  152 (313)
                      +++|+..+- +.......|+|.|+.+....+..+...+.--++...+.      +         ..+..|.||+++|+|+
T Consensus       209 TttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~------r---------~tg~~L~GKtVvVtGa  273 (488)
T 3ond_A          209 TTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM------R---------ATDVMIAGKVAVVAGY  273 (488)
T ss_dssp             SHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH------H---------HHCCCCTTCEEEEECC
T ss_pred             ccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHHHHHHHH------H---------HcCCcccCCEEEEECC
Confidence            677877652 22334577999999775444433322222222211111      0         0234689999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEE
Q 021361          153 GRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGIL  227 (313)
Q Consensus       153 G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~  227 (313)
                      |.||+.+|+.|+++|++|+++++++...     .++ ...+++++++.+|+|+.+.    .+.++++.+.++.||+++++
T Consensus       274 GgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~-dv~~lee~~~~aDvVi~at----G~~~vl~~e~l~~mk~gaiV  348 (488)
T 3ond_A          274 GDVGKGCAAALKQAGARVIVTEIDPICALQATMEGL-QVLTLEDVVSEADIFVTTT----GNKDIIMLDHMKKMKNNAIV  348 (488)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCGGGTTTTCSEEEECS----SCSCSBCHHHHTTSCTTEEE
T ss_pred             CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCC-ccCCHHHHHHhcCEEEeCC----CChhhhhHHHHHhcCCCeEE
Confidence            9999999999999999999999976432     122 2357889999999999754    45778999999999999999


Q ss_pred             EEcCCCC
Q 021361          228 INIGRGA  234 (313)
Q Consensus       228 in~~rg~  234 (313)
                      +|+|++.
T Consensus       349 vNaG~~~  355 (488)
T 3ond_A          349 CNIGHFD  355 (488)
T ss_dssp             EESSSTT
T ss_pred             EEcCCCC
Confidence            9999983

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.08  E-value=4.1e-10  Score=110.15  Aligned_cols=106  Identities=15%  Similarity=0.240  Sum_probs=90.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------ccccccCCHHHHHhh---CCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------ANYKYYTNIIDLASN---CQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~~~~~l~~l~~~---aDvv~l~~p~~~~t~~  211 (313)
                      .+|||||+|.||+.+|+.|...|++|.+|||+++..          .+.....++++++++   +|+|++++|....++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~   90 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDA   90 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHH
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHH
Confidence            479999999999999999999999999999987542          133445789999887   9999999998778888


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+ ++....+++|.++|+++.+...+.+.+.+.+.+..+.
T Consensus        91 vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           91 LI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             HH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            77 4577889999999999999988888899988875554

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.08  E-value=2.2e-10  Score=106.85  Aligned_cols=132  Identities=11%  Similarity=0.129  Sum_probs=89.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhh----CCeeEEecCCChHhhhccCH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASN----CQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~----aDvv~l~~p~~~~t~~~i~~  215 (313)
                      ++|||||+|.||+++|+.|+..|++|++||++++..     .+.....++++++++    ||+|++|+|. ..+..++. 
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~-   86 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD-   86 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH-
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH-
Confidence            579999999999999999999999999999987532     233445688888765    6999999994 45666663 


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEE-ccCCCCCC-CC---CcccCCCCcEEEcCCCC
Q 021361          216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAG-LDVYENEP-EV---PEQMLGLNNVVLLPHVG  281 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~-lDV~~~EP-~~---~~~l~~~pnvi~TPHia  281 (313)
                      + +..++++++++|++..+.-..+++.+.+.  ...... -=++..|- -+   ...|+.-.++++||+-.
T Consensus        87 ~-l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~  154 (341)
T 3ktd_A           87 A-VHTHAPNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQL  154 (341)
T ss_dssp             H-HHHHCTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGG
T ss_pred             H-HHccCCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCC
Confidence            3 34468999999998765433344443332  122111 12333331 11   12577777899999744

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.06  E-value=2.8e-10  Score=103.31  Aligned_cols=105  Identities=10%  Similarity=0.155  Sum_probs=86.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH--HH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR--KV  217 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~--~~  217 (313)
                      .+|||||+|.||+.+|+.|...|++|.+|+ +++..     .+.....+++++++++|+|++++|...+++.++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            489999999999999999999999999999 66532     23344578999999999999999977667766642  45


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                      .+.+++|.++|+++.|...+.+.+.+.+.+..+
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  115 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGA  115 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            567899999999999988888899998887433

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.05  E-value=2.6e-10  Score=103.61  Aligned_cols=103  Identities=17%  Similarity=0.242  Sum_probs=83.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH--HHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR--KVI  218 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~--~~l  218 (313)
                      +|||||+|.||+.+++.|...|++|.+|||+++..     .+.....+++++++++|+|++++|.+..++.++..  ..+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~   81 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL   81 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGG
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHH
Confidence            69999999999999999999999999999987542     23444578999999999999999977777766543  255


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      +.+++|.++|+++...+-+.+.+.+.+.+.
T Consensus        82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           82 KKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             GTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            678999999998877776667777777653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.04  E-value=5.7e-10  Score=102.55  Aligned_cols=107  Identities=17%  Similarity=0.310  Sum_probs=86.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH--HH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR--KV  217 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~--~~  217 (313)
                      ++|||||+|.||+.+|+.|...|++|.+|||+++..     .+.....+++++++++|+|++++|....++..+..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            579999999999999999999999999999987643     23334568889999999999999976667665543  24


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ++.++++.++|+++++.....+.+.+.+......
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~  144 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR  144 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            5678999999999998877788888888664443

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.01  E-value=4.5e-10  Score=109.32  Aligned_cols=106  Identities=17%  Similarity=0.306  Sum_probs=88.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----c----cccccCCHHHHHhh---CCeeEEecCCChHhhhc
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----A----NYKYYTNIIDLASN---CQILIVACSLTEETHHI  212 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~----~~~~~~~l~~l~~~---aDvv~l~~p~~~~t~~~  212 (313)
                      ++|||||+|.||+.+|+.|...|++|.+|||+++..     .    +.....++++++++   +|+|++++|....++..
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            579999999999999999999999999999986532     1    33445789999887   99999999987777777


Q ss_pred             cCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       213 i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      + .+....+++|.++|+++.|...+.+.+.+.+.+..+.
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~  123 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN  123 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence            7 3566789999999999999888888888888765554

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.00  E-value=4.6e-10  Score=101.50  Aligned_cols=103  Identities=15%  Similarity=0.202  Sum_probs=83.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      ++|||||+|.||+.+++.|.. |++|.+|||+++...     +..... ++++++++|+|++++|....++..+ ++..+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            369999999999999999999 999999999875421     222333 7778889999999999766677665 45667


Q ss_pred             hcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          220 ALGPSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                      .+++|.++|+++.+...+.+.+.+.+.+..+
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  109 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGV  109 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            7899999999999988888899998887544

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.99  E-value=9.5e-10  Score=107.26  Aligned_cols=106  Identities=13%  Similarity=0.226  Sum_probs=88.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------ccccccCCHHHHHh---hCCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------ANYKYYTNIIDLAS---NCQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~~~~~l~~l~~---~aDvv~l~~p~~~~t~~  211 (313)
                      .+|||||+|.||+.+|..|...|++|.+|||+++..          .+.....+++++++   ++|+|++++|....++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            369999999999999999999999999999987532          22334568999875   89999999998777887


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+. +....+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        83 vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~  121 (482)
T 2pgd_A           83 FIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL  121 (482)
T ss_dssp             HHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            774 566789999999999999888888888888775554

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.96  E-value=9.8e-10  Score=106.71  Aligned_cols=130  Identities=12%  Similarity=0.163  Sum_probs=94.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc--CCcEEEECCCCcccc------------------------cccccCCHHHHHhhCCe
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF--GCPISYHSRSEKSDA------------------------NYKYYTNIIDLASNCQI  198 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~------------------------~~~~~~~l~~l~~~aDv  198 (313)
                      .+|+|||+|.||..+|..|...  |++|++||++++...                        +.....++++.+++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            4899999999999999999988  899999999764211                        12234678889999999


Q ss_pred             eEEecCCChHhhhc-----------c--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEcc---CCCCCC
Q 021361          199 LIVACSLTEETHHI-----------V--NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLD---VYENEP  262 (313)
Q Consensus       199 v~l~~p~~~~t~~~-----------i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lD---V~~~EP  262 (313)
                      |++|+|......+.           .  .++..+.+++|+++|+.++..+-..+.+.+.+.+....  .+|   ++.+|+
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~Pe~  163 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNPEF  163 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCHHH
Confidence            99999865433221           1  13355678999999999998888888888888875422  133   356666


Q ss_pred             CCCc----ccCCCCcEEE
Q 021361          263 EVPE----QMLGLNNVVL  276 (313)
Q Consensus       263 ~~~~----~l~~~pnvi~  276 (313)
                      ..+.    .+...+++++
T Consensus       164 ~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          164 LAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCTTSHHHHHHSCSCEEE
T ss_pred             hhcccchhhccCCCEEEE
Confidence            5443    2566677764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.96  E-value=6.3e-10  Score=103.68  Aligned_cols=131  Identities=18%  Similarity=0.197  Sum_probs=90.8

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      ..+++++|||||+|.||+.+|+.|+..|++|.+++++....      .+.... ++++++++||+|++++|.... ..++
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~~-~~v~   89 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQ-GRLY   89 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHH-HHHH
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHHH-HHHH
Confidence            35788999999999999999999999999999999986531      233333 888999999999999996543 5555


Q ss_pred             CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCc----ccCC---CCcEEEcCCCC
Q 021361          214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE----QMLG---LNNVVLLPHVG  281 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~----~l~~---~pnvi~TPHia  281 (313)
                      .++....+++|+++++++ |  +..  ..+.+.    .....||+...|..+.    .++.   -.++++|||-.
T Consensus        90 ~~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~  155 (338)
T 1np3_A           90 KEEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD  155 (338)
T ss_dssp             HHHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC
T ss_pred             HHHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC
Confidence            545667799999999874 2  222  111111    1123455555563332    2443   56788999854

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.96  E-value=2e-09  Score=98.29  Aligned_cols=135  Identities=18%  Similarity=0.165  Sum_probs=90.2

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------------cccccCCHHHHHhhCCeeEEecCCChHh
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------------NYKYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------~~~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      -+.|+|||||+|.||..+|+.+. .|++|++||++++...            +.....++++ +++||+|+.++|.+.+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            35689999999999999999999 9999999999875321            2333467776 89999999999999887


Q ss_pred             hhccCHHHHhhcCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHH
Q 021361          210 HHIVNRKVIDALGPSGILI-NIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETS  288 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~i-n~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~  288 (313)
                      +..+-.+ ++.+ ++++++ |+|.-.   .+.+.+.+.. .....++--|.  |.     ...+-+.+.|+-. .+.+.+
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~---~~~~a~~~~~-~~r~~G~Hf~~--Pv-----~~~~lveiv~g~~-t~~~~~  153 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVIS---VDDIAERLDS-PSRFLGVHWMN--PP-----HVMPLVEIVISRF-TDSKTV  153 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSC---HHHHHTTSSC-GGGEEEEEECS--ST-----TTCCEEEEEECTT-CCHHHH
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcC---HHHHHHHhhc-ccceEeEEecC--cc-----ccCCEEEEECCCC-CCHHHH
Confidence            7665444 5667 999885 777644   4455544422 22233444444  32     2345677777532 344444


Q ss_pred             HHHH
Q 021361          289 KAMA  292 (313)
Q Consensus       289 ~~~~  292 (313)
                      ++..
T Consensus       154 ~~~~  157 (293)
T 1zej_A          154 AFVE  157 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.95  E-value=3.1e-09  Score=95.72  Aligned_cols=137  Identities=18%  Similarity=0.219  Sum_probs=92.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccc--cccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANY--KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~--~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      +|+|||+|.||+.+++.|...|++|.+|+|+++..     .+.  ....+++++ +++|+|++++|. ..+..++. +..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~~-~l~   78 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTLE-KLI   78 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHHH-HHG
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHHH-HHH
Confidence            79999999999999999999999999999986532     122  124578888 899999999994 34555553 456


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCC---CCCC-cccCCCCcEEEcCCCCCCcHHHHH
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENE---PEVP-EQMLGLNNVVLLPHVGSDTEETSK  289 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~E---P~~~-~~l~~~pnvi~TPHia~~t~~~~~  289 (313)
                      ..+++++++|+++.......+.+.+.+.  ++.+. .-++..+   |... ..++.-+.++++|+-++ +.+..+
T Consensus        79 ~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~-~~~~~~  149 (279)
T 2f1k_A           79 PHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT-DPEQLA  149 (279)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECTTC-CHHHHH
T ss_pred             hhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCCCC-CHHHHH
Confidence            6789999999997766655555555433  33222 1233222   2111 14566667889997543 444433

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.95  E-value=1.3e-09  Score=106.22  Aligned_cols=105  Identities=18%  Similarity=0.320  Sum_probs=87.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cc-------ccccCCHHHHHhh---CCeeEEecCCChHh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------AN-------YKYYTNIIDLASN---CQILIVACSLTEET  209 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~-------~~~~~~l~~l~~~---aDvv~l~~p~~~~t  209 (313)
                      +|||||+|.||+.+|..|...|++|.+|+|+++..      .+       .....+++++++.   +|+|++++|....+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v   82 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT   82 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHHH
Confidence            69999999999999999999999999999986431      12       3345689998875   99999999987777


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +..+ ++....+++|.++|+++.|...+.+.+.+.+.+..+.
T Consensus        83 ~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~  123 (478)
T 1pgj_A           83 DSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR  123 (478)
T ss_dssp             HHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred             HHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence            7777 4566789999999999999888888898888875554

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.91  E-value=1.7e-09  Score=104.04  Aligned_cols=92  Identities=21%  Similarity=0.395  Sum_probs=72.0

Q ss_pred             ccccCC-CEEEEEcCChhHHHHHHHHHhc------CCcEEEECCCCc-c-----cccccc----cCCHHHHHhhCCeeEE
Q 021361          139 GSKFSG-KSVGIVGLGRIGTAIAKRVEAF------GCPISYHSRSEK-S-----DANYKY----YTNIIDLASNCQILIV  201 (313)
Q Consensus       139 ~~~l~g-~~vgiiG~G~iG~~~a~~l~~~------g~~V~~~~~~~~-~-----~~~~~~----~~~l~~l~~~aDvv~l  201 (313)
                      ...|+| ++|||||+|+||+++|+.|+..      |++|++..+... .     ..++..    ..++.+++++||+|++
T Consensus        48 ~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVIL  127 (525)
T 3fr7_A           48 PEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLL  127 (525)
T ss_dssp             HHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEE
T ss_pred             hHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEE
Confidence            356899 9999999999999999999988      999876555432 2     123332    2579999999999999


Q ss_pred             ecCCChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          202 ACSLTEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       202 ~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      ++|..... .++. +.+..||+|++ |-.+.|
T Consensus       128 aVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaG  156 (525)
T 3fr7_A          128 LISDAAQA-DNYE-KIFSHMKPNSI-LGLSHG  156 (525)
T ss_dssp             CSCHHHHH-HHHH-HHHHHSCTTCE-EEESSS
T ss_pred             CCChHHHH-HHHH-HHHHhcCCCCe-EEEeCC
Confidence            99986554 4555 68899999999 566677

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.43  E-value=1.5e-10  Score=100.12  Aligned_cols=90  Identities=14%  Similarity=0.258  Sum_probs=72.3

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++|||||+|.||+.+|+.|...|++|.+|+|+.+..    .+... .+++++++++|+|++++|.. .++.++  + 
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~-~~~~~~~~~aDvVilav~~~-~~~~v~--~-   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEV-LCYSEAASRSDVIVLAVHRE-HYDFLA--E-   91 (201)
Confidence            677899999999999999999999999999999986521    12222 37788899999999999964 566665  2 


Q ss_pred             HhhcCCCcEEEEcCCCCcc
Q 021361          218 IDALGPSGILINIGRGAHI  236 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~v  236 (313)
                      +..+++++++||+++|-..
T Consensus        92 l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 LADSLKGRVLIDVSNNQKM  110 (201)
Confidence            4456789999999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.88  E-value=8.9e-09  Score=99.41  Aligned_cols=175  Identities=14%  Similarity=0.147  Sum_probs=109.2

Q ss_pred             CCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC----cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEE
Q 021361           98 DVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH----FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYH  173 (313)
Q Consensus        98 ~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~----~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~  173 (313)
                      |-|-..|.|.+.+++|..-|         ..++|....    +.....-.=++|||||.|.||..+|..+...|++|++|
T Consensus        13 ~~~~~~~~~~~~~~~~~a~~---------~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~   83 (460)
T 3k6j_A           13 GENLYFQGSEVRSYLMEAHS---------LAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLV   83 (460)
T ss_dssp             SGGGGGCBCHHHHHHHHTTC---------CTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccchhhhhHHHHHHHHhHHH---------hhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            34444566666666666322         245676321    11111122368999999999999999999999999999


Q ss_pred             CCCCccc-------------cc-------------ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEE
Q 021361          174 SRSEKSD-------------AN-------------YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGIL  227 (313)
Q Consensus       174 ~~~~~~~-------------~~-------------~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~  227 (313)
                      |+++++.             .+             .....+++ .+++||+|+.++|.+.+.+.-+-++..+.++++++|
T Consensus        84 D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIl  162 (460)
T 3k6j_A           84 VRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIF  162 (460)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEE
T ss_pred             ECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEE
Confidence            9987521             11             11245665 688999999999988877765556677889999999


Q ss_pred             EEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHH
Q 021361          228 INIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMAD  293 (313)
Q Consensus       228 in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~  293 (313)
                      +..+.+  +....+.+.+... -..+++.-|.  |..     .++-+-+.|+-. .+.++.+.+..
T Consensus       163 asnTSs--l~i~~ia~~~~~p-~r~iG~Hffn--Pv~-----~m~LvEIv~g~~-Ts~e~~~~~~~  217 (460)
T 3k6j_A          163 GTNTSS--LDLNEISSVLRDP-SNLVGIHFFN--PAN-----VIRLVEIIYGSH-TSSQAIATAFQ  217 (460)
T ss_dssp             EECCSS--SCHHHHHTTSSSG-GGEEEEECCS--STT-----TCCEEEEECCSS-CCHHHHHHHHH
T ss_pred             EecCCC--hhHHHHHHhccCC-cceEEEEecc--hhh-----hCCEEEEEeCCC-CCHHHHHHHHH
Confidence            644333  4456666655432 2345566555  321     234466666522 34444444433

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.87  E-value=2.2e-09  Score=95.94  Aligned_cols=97  Identities=15%  Similarity=0.216  Sum_probs=76.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCC--Cccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRS--EKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~--~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      +|||||+|.||..+|+.|...|++|++|++.  ++..     .+..  .++++++++||+|++++|.....+.+  .+..
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~~   77 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRAG   77 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHHH
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHHH
Confidence            7999999999999999999999999999883  2211     1222  57888999999999999976666554  4566


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      +.+++  ++|+++.+...+.+.+.+.+.+.
T Consensus        78 ~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           78 RHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             TTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            77776  99999988877778888887653

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.86  E-value=3.6e-09  Score=91.82  Aligned_cols=79  Identities=22%  Similarity=0.379  Sum_probs=63.3

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      ++.+++|+|||+|.||..+|+.|...|++|.+|+|+++             .+++||+|++++| +..++.++. +....
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-------------~~~~aD~vi~av~-~~~~~~v~~-~l~~~   80 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------ATTLGEIVIMAVP-YPALAALAK-QYATQ   80 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-------------CSSCCSEEEECSC-HHHHHHHHH-HTHHH
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-------------HhccCCEEEEcCC-cHHHHHHHH-HHHHh
Confidence            57888999999999999999999999999999998754             3568999999999 566666654 34456


Q ss_pred             cCCCcEEEEcCCCCc
Q 021361          221 LGPSGILINIGRGAH  235 (313)
Q Consensus       221 mk~ga~~in~~rg~~  235 (313)
                      ++ ++++|++++|--
T Consensus        81 ~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           81 LK-GKIVVDITNPLN   94 (209)
T ss_dssp             HT-TSEEEECCCCBC
T ss_pred             cC-CCEEEEECCCCC
Confidence            77 999999999765

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.85  E-value=3.8e-09  Score=95.56  Aligned_cols=165  Identities=15%  Similarity=0.182  Sum_probs=113.0

Q ss_pred             CceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHH
Q 021361           45 AIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDE  124 (313)
Q Consensus        45 ~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~  124 (313)
                      +++.+.++  .+..++++..++.+.-.+....++|.++.    +.|-.    .|.|.+..     +++.++.+       
T Consensus        65 ~~~G~nvt--iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~----~g~nTd~~-----G~~~~l~~-------  122 (275)
T 2hk9_A           65 KVKGINVT--VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKA----YGYNTDWI-----GFLKSLKS-------  122 (275)
T ss_dssp             TCCEEEEC--TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEECCHHH-----HHHHHHHH-------
T ss_pred             CCCEEEEC--ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEE----EeecCCHH-----HHHHHHHH-------
Confidence            56667663  45677888888888888888888888753    34422    23344332     44444322       


Q ss_pred             HHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------cccccCCHHHHHhhCCe
Q 021361          125 FVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------NYKYYTNIIDLASNCQI  198 (313)
Q Consensus       125 ~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~~~~~~~l~~l~~~aDv  198 (313)
                                   .+.+++|++++|||.|.+|+.+++.|...|++|.+++|+.++..      +.....++.++++++|+
T Consensus       123 -------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDi  189 (275)
T 2hk9_A          123 -------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQV  189 (275)
T ss_dssp             -------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSE
T ss_pred             -------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCE
Confidence                         12247789999999999999999999999999999999865321      22233478888999999


Q ss_pred             eEEecCCChH--hhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          199 LIVACSLTEE--THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       199 v~l~~p~~~~--t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      |++++|....  +...++   ++.++++.++++++.   . ...+.+..++..+.
T Consensus       190 Vi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~-~t~ll~~a~~~g~~  237 (275)
T 2hk9_A          190 IVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---K-ETKLLKKAKEKGAK  237 (275)
T ss_dssp             EEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---S-CCHHHHHHHHTTCE
T ss_pred             EEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---C-hHHHHHHHHHCcCE
Confidence            9999997642  223343   456899999999988   2 33455555544333

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.85  E-value=1.3e-09  Score=97.65  Aligned_cols=96  Identities=15%  Similarity=0.326  Sum_probs=75.3

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCcccc------cccccCCHHHHHhhCCeeEEecCCChHhhhc
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDA------NYKYYTNIIDLASNCQILIVACSLTEETHHI  212 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~  212 (313)
                      +++.+.+|||||+|.||+.+++.|...|++ |.+|||+++...      +.....+++++++++|+|++++|.. ....+
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v   84 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAEL   84 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHH
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHH
Confidence            445667899999999999999999999999 899999865321      3334567888889999999999865 33444


Q ss_pred             cCHHHHhhcCCCcEEEEcCCCCccC
Q 021361          213 VNRKVIDALGPSGILINIGRGAHID  237 (313)
Q Consensus       213 i~~~~l~~mk~ga~~in~~rg~~vd  237 (313)
                      + ++..+.+++++++|+++.|-..+
T Consensus        85 ~-~~l~~~~~~~~ivv~~s~~~~~~  108 (266)
T 3d1l_A           85 L-QGIVEGKREEALMVHTAGSIPMN  108 (266)
T ss_dssp             H-HHHHTTCCTTCEEEECCTTSCGG
T ss_pred             H-HHHHhhcCCCcEEEECCCCCchH
Confidence            4 34556788999999999987653

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.85  E-value=1.2e-08  Score=97.88  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=82.9

Q ss_pred             cccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----------------------cccccCCHHHHHh
Q 021361          138 LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----------------------NYKYYTNIIDLAS  194 (313)
Q Consensus       138 ~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----------------------~~~~~~~l~~l~~  194 (313)
                      ++++..-.+|+|||+|.||..+|..|.. |++|++||++++...                       ......++++.++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            4566667799999999999999999998 999999999875310                       1233568899999


Q ss_pred             hCCeeEEecCCChHh-------hhcc--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          195 NCQILIVACSLTEET-------HHIV--NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       195 ~aDvv~l~~p~~~~t-------~~~i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                      +||+|++++|...+.       ..+.  -+...+ +++|+++|+.|.-.+-..+.+.+.+.+..+
T Consensus       109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            999999999965211       1111  134566 999999999999888888899888876544

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.84  E-value=3.8e-09  Score=99.24  Aligned_cols=103  Identities=16%  Similarity=0.221  Sum_probs=81.5

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------cccccCCHHHHHh-hCCeeEEecCCChHhhhcc
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------NYKYYTNIIDLAS-NCQILIVACSLTEETHHIV  213 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~~~~~~~l~~l~~-~aDvv~l~~p~~~~t~~~i  213 (313)
                      +|.||+|+|+|+|+||+.+|+.|..+|++|+++|++.....      +.. ..+.++++. +||+++.|.     +.+.|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~-~v~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEChHHHhccCCcEeeccc-----hHHHh
Confidence            68999999999999999999999999999999998764321      222 235566665 899998764     56688


Q ss_pred             CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          214 NRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +.+.++.|+ ..++++.+++++.+++ ..+.|+++.+.
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            888888884 5789999999988866 55667777664

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.81  E-value=2.6e-08  Score=90.94  Aligned_cols=100  Identities=15%  Similarity=0.179  Sum_probs=73.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c------------------ccccCCHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N------------------YKYYTNII  190 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~------------------~~~~~~l~  190 (313)
                      ++|+|||.|.||..+|..|...|++|++||++++...                +                  .....+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            5899999999999999999999999999999864311                0                  12246788


Q ss_pred             HHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361          191 DLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALL  246 (313)
Q Consensus       191 ~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~  246 (313)
                      +.+++||+|++++|.+.+.+.-+-++..+.++++++++....+  +..+.+.+.+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~  149 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATT  149 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcC
Confidence            8899999999999987665444444555668889998855444  34455655543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.78  E-value=6.2e-09  Score=84.65  Aligned_cols=85  Identities=24%  Similarity=0.344  Sum_probs=68.7

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------cc--cccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------NY--KYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~~--~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      |++|+|||.|.||+.+++.|...|++|.+++|+.+...      +.  ....+++++++++|+|++++|..   ..++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence            88999999999999999999999999999999875421      11  23468899999999999999875   334554


Q ss_pred             HHHhhcCCCcEEEEcCCCC
Q 021361          216 KVIDALGPSGILINIGRGA  234 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~  234 (313)
                         +.+++|.+++|++...
T Consensus        98 ---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           98 ---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             ---GGCCTTCEEEECCSSC
T ss_pred             ---HHcCCCCEEEEccCCc
Confidence               4578899999998754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.77  E-value=2.7e-08  Score=93.39  Aligned_cols=179  Identities=12%  Similarity=0.068  Sum_probs=115.6

Q ss_pred             CceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEEEeC---CCCC-----cHHHHHHHH--HHHHH
Q 021361           45 AIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNT---PDVL-----TDDVADLAV--GLVLA  114 (313)
Q Consensus        45 ~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~---~~~~-----~~~vAE~~l--~~~l~  114 (313)
                      ++|+|+... ++...+.....+++.++......++.-.++.+.++|+...|.   |...     ..++++.+-  +.+++
T Consensus        66 ~ad~i~~vk-sP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~g  144 (361)
T 1pjc_A           66 SREMVVKVK-EPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFG  144 (361)
T ss_dssp             TSSEEECSS-CCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEC-CCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHH
Confidence            688888644 444444444446776666665556554467788889888763   3321     245555554  44444


Q ss_pred             HhhchHHHHHHHHcCC-CcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccc---
Q 021361          115 VLRRVCEFDEFVKSGK-WKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKY---  185 (313)
Q Consensus       115 ~~r~~~~~~~~~~~~~-w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~---  185 (313)
                      +.. +..    ...|+ +.-..  . ..+++++|.|+|.|.+|+.+++.++.+|++|+++||++++..     +...   
T Consensus       145 A~n-t~~----~~~g~G~~l~~--l-~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~  216 (361)
T 1pjc_A          145 ARF-LER----QQGGRGVLLGG--V-PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVEL  216 (361)
T ss_dssp             HHH-TSG----GGTSCCCCTTC--B-TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEE
T ss_pred             HHH-Hhh----ccCCCceeccC--C-CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEe
Confidence            322 211    01121 11000  1 247889999999999999999999999999999999875321     1111   


Q ss_pred             ----cCCHHHHHhhCCeeEEecCCCh-HhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          186 ----YTNIIDLASNCQILIVACSLTE-ETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       186 ----~~~l~~l~~~aDvv~l~~p~~~-~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                          ..++.+.++++|+|+.+++... ....++.++.++.|+++++++|++-
T Consensus       217 ~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          217 LYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             EECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             eeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence                1245567789999999987533 2334567888999999999999984

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.73  E-value=3.8e-08  Score=87.67  Aligned_cols=99  Identities=24%  Similarity=0.426  Sum_probs=72.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcC----CcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFG----CPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      ..+|||||+|.||+.+++.|...|    .+|.+|||+++. .+.....+..++++++|+|++++|. ...+.++. +...
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~~-~l~~   80 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVLN-NIKP   80 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHHH-HSGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHHH-HHHH
Confidence            357999999999999999999888    689999998765 4555556888999999999999994 45554443 3445


Q ss_pred             hcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          220 ALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      .++ +..+|....|  ++.+.+.+.+..+
T Consensus        81 ~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           81 YLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             GCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             hcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            564 5555554433  3445666666554

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.73  E-value=9.1e-09  Score=89.58  Aligned_cols=90  Identities=21%  Similarity=0.288  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      .+++|+|||+|.||+.+++.|...|++|.+++|+.+...     +... .+++++++++|+|++++|. ...+.++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEE-EEHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCce-ecHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            456899999999999999999999999999999865321     2222 2788899999999999994 34555553   


Q ss_pred             HhhcCCCcEEEEcCCCCccC
Q 021361          218 IDALGPSGILINIGRGAHID  237 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd  237 (313)
                      ++.+.+++++|++++|-..+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            33333799999999987543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.72  E-value=5.2e-08  Score=89.94  Aligned_cols=101  Identities=19%  Similarity=0.249  Sum_probs=77.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcC----CcEEEECCCCc--cc-----ccccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFG----CPISYHSRSEK--SD-----ANYKYYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g----~~V~~~~~~~~--~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      ...+|||||+|.||..+|..|...|    .+|++|+|+.+  ..     .+.....+..+++++||+|++++| ......
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~   99 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPF   99 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHH
Confidence            3457999999999999999999999    78999999874  21     234445678899999999999999 455555


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      ++. +....++++.++|+++-|-  ..+.+.+.+.+
T Consensus       100 vl~-~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~  132 (322)
T 2izz_A          100 ILD-EIGADIEDRHIVVSCAAGV--TISSIEKKLSA  132 (322)
T ss_dssp             HHH-HHGGGCCTTCEEEECCTTC--CHHHHHHHHHT
T ss_pred             HHH-HHHhhcCCCCEEEEeCCCC--CHHHHHHHHhh
Confidence            553 4556688999999987664  34566666664

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.72  E-value=2.6e-08  Score=80.86  Aligned_cols=103  Identities=13%  Similarity=0.238  Sum_probs=81.4

Q ss_pred             cCCCEEEEEcC----ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          142 FSGKSVGIVGL----GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       142 l~g~~vgiiG~----G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      ++-++|+|||.    |.+|..+++.|...|++|+.++++.+...+...+.+++++....|++++++| .+....++.+ .
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~~~-~   89 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAKE-A   89 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHHH-H
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHHHH-H
Confidence            45679999999    9999999999999999999999887655667777899999999999999999 5666666643 4


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+ +..++++++++.    ..+++.+..++..+.
T Consensus        90 ~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           90 VE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             HH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             HH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            44 666777777743    257777877777666

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.72  E-value=7.5e-08  Score=92.56  Aligned_cols=132  Identities=13%  Similarity=0.076  Sum_probs=90.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------------------------cc-ccccCCHHHHHhhCCeeE
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------------------------AN-YKYYTNIIDLASNCQILI  200 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------------------~~-~~~~~~l~~l~~~aDvv~  200 (313)
                      +|+|||+|.||..+|..|...|++|+++|++++..                        .+ .....++++.+++||+|+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvvi   81 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSF   81 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEEE
Confidence            79999999999999999999999999999976431                        01 223467888899999999


Q ss_pred             EecCCChH---------hhhccCHHHHhhcCC---CcEEEEcCCCCccC-HHHHHHHHHh--CCceEEEcc-CCCCCCCC
Q 021361          201 VACSLTEE---------THHIVNRKVIDALGP---SGILINIGRGAHID-EPELVSALLE--GRLAGAGLD-VYENEPEV  264 (313)
Q Consensus       201 l~~p~~~~---------t~~~i~~~~l~~mk~---ga~~in~~rg~~vd-~~al~~al~~--g~~~ga~lD-V~~~EP~~  264 (313)
                      +|+|....         .+..+ ++..+.+++   ++++|+.+...+-. .+.+.+.+.+  |...+.... ++.+|...
T Consensus        82 iaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~~  160 (436)
T 1mv8_A           82 ICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR  160 (436)
T ss_dssp             ECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred             EEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECccccc
Confidence            99996554         33333 345566888   99999998776655 6677777766  322100112 23455544


Q ss_pred             Ccc----cCCCCcEEEcC
Q 021361          265 PEQ----MLGLNNVVLLP  278 (313)
Q Consensus       265 ~~~----l~~~pnvi~TP  278 (313)
                      +..    +...+.+++..
T Consensus       161 ~G~~~~~~~~~~~iv~G~  178 (436)
T 1mv8_A          161 ESTAIKDYDFPPMTVIGE  178 (436)
T ss_dssp             TTSHHHHHHSCSCEEEEE
T ss_pred             ccccchhccCCCEEEEEc
Confidence            432    34555666543

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.70  E-value=1.6e-08  Score=93.10  Aligned_cols=105  Identities=13%  Similarity=0.179  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhc-CC-cEEEECCCCcccc------c--ccccCCHHHHHhhCCeeEEecCCChHhhhc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAF-GC-PISYHSRSEKSDA------N--YKYYTNIIDLASNCQILIVACSLTEETHHI  212 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~-g~-~V~~~~~~~~~~~------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~  212 (313)
                      .+++|||||+|.||+.+++.|... |+ +|.+|||+.++..      +  ...+.+++++++++|+|++++|.   ...+
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v  210 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPI  210 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcc
Confidence            467999999999999999998764 87 7999999875421      2  33457899999999999999985   3456


Q ss_pred             cCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEcc
Q 021361          213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLD  256 (313)
Q Consensus       213 i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lD  256 (313)
                      +..   +.+++|.++++++....-. ..+.+.+.+...  ..+|
T Consensus       211 ~~~---~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~--~~vD  248 (312)
T 2i99_A          211 LFG---EWVKPGAHINAVGASRPDW-RELDDELMKEAV--LYVD  248 (312)
T ss_dssp             BCG---GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSE--EEES
T ss_pred             cCH---HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCE--EEEC
Confidence            654   5689999999998776633 444444433322  3566

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.70  E-value=2.2e-08  Score=88.85  Aligned_cols=99  Identities=18%  Similarity=0.262  Sum_probs=75.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC----cEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC----PISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      ++|||||+|.||+.+++.|...|+    +|.+|||++++.      .+.....+..+++++||+|++++|. ...+.++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            579999999999999999999998    999999987542      2344567899999999999999974 3445455 


Q ss_pred             HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          215 RKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      ++....++++.++|.+.-|-  ..+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            34556688999999766553  45667666644

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.69  E-value=5.1e-08  Score=86.79  Aligned_cols=96  Identities=18%  Similarity=0.275  Sum_probs=74.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      .+|||||+|.||+.+++.|...|.+|.+|||+++..      .+...+.+++++++++|+|++++| .....     +.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~-----~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFE-----TVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHH-----HHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHH-----HHH
Confidence            489999999999999999999999999999986532      134445689999999999999999 44433     344


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      ..+++|.++|+...|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            45678999999876643  45676766544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.67  E-value=7.6e-08  Score=92.95  Aligned_cols=102  Identities=14%  Similarity=0.188  Sum_probs=79.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-------------------------cccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------------------------NYKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------------------------~~~~~~~l~~l~~~aDvv  199 (313)
                      .+|+|||+|.||..+|..|...|++|++||++++...                         ......++++++++||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            4899999999999999999999999999999864310                         122346889999999999


Q ss_pred             EEecCCCh---------HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          200 IVACSLTE---------ETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       200 ~l~~p~~~---------~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      ++|+|...         ..+..+ +...+.+++|.++|+.+.-.+-..+.+.+.+.+
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99998653         333333 456677999999999997665556667666655

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.66  E-value=1.3e-07  Score=91.14  Aligned_cols=103  Identities=11%  Similarity=0.225  Sum_probs=80.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------------------------c-ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------------------------N-YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~~l~~~aDvv  199 (313)
                      -+++|||+|.||..+|..|...|++|++||+++++..                        + .....++.+.+++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            3799999999999999999999999999999876421                        0 23357888999999999


Q ss_pred             EEecCCChH----------hhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          200 IVACSLTEE----------THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       200 ~l~~p~~~~----------t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      ++|+|....          .+..+ +...+.+++|.++|+.|.-.+=..+.+.+.+.+.
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            999885432          33333 4567789999999999976666677777777653

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.65  E-value=1.3e-08  Score=92.27  Aligned_cols=87  Identities=14%  Similarity=0.289  Sum_probs=69.3

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      .+|||||+ |.||+.+|+.|...|++|++|||+++..     .+... .+..+++++||+|++++|... +..++ ++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDEADVVVLALPDNI-IEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCC-CCSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCc-CCHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence            58999999 9999999999999999999999986532     12222 367788899999999998643 55555 3456


Q ss_pred             hhcCCCcEEEEcCCCC
Q 021361          219 DALGPSGILINIGRGA  234 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~  234 (313)
                      ..+++++++|+++.|.
T Consensus        89 ~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           89 PRVRPGTIVLILDAAA  104 (286)
T ss_dssp             GGSCTTCEEEESCSHH
T ss_pred             HhCCCCCEEEECCCCc
Confidence            6789999999988876

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.64  E-value=6.4e-08  Score=87.66  Aligned_cols=106  Identities=17%  Similarity=0.204  Sum_probs=79.7

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC---cEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC---PISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~---~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      .++|||||+|+||+.+++.|...|+   +|.+|||+++..      .+.....+..+++++||+|++++|. .....++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            4689999999999999999999998   899999987642      2444557899999999999999974 3444444 


Q ss_pred             HHHHhh-cCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEE
Q 021361          215 RKVIDA-LGPSGILINIGRGAHIDEPELVSALLEG-RLAGA  253 (313)
Q Consensus       215 ~~~l~~-mk~ga~~in~~rg~~vd~~al~~al~~g-~~~ga  253 (313)
                      ++.... ++++.++|++.-|-  ..+.|.+.+..+ ++.++
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~~~~vvr~  119 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGV--TTPLIEKWLGKASRIVRA  119 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTCCSSEEEE
T ss_pred             HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCCCCeEEEE
Confidence            334455 78888999887654  467787877653 44433

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.61  E-value=7.2e-08  Score=93.88  Aligned_cols=113  Identities=19%  Similarity=0.263  Sum_probs=80.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|||||.|.||..+|..+...|++|++||++.+...                +             .....+++ .+++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   84 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALAA   84 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-HhcC
Confidence            5899999999999999999999999999999875321                1             01234564 5889


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEE-EEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCC
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGIL-INIGRGAHIDEPELVSALLEGRLAGAGLDVYENEP  262 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~-in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP  262 (313)
                      ||+|+.++|.+.+.+.-+-++..+.+++++++ .|+|.-   +.+.+.+.+.. .-..+++.-|.+-|
T Consensus        85 aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti---~i~~ia~~~~~-p~~~ig~hf~~Pa~  148 (483)
T 3mog_A           85 ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSI---SITAIAAEIKN-PERVAGLHFFNPAP  148 (483)
T ss_dssp             CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSS---CHHHHTTTSSS-GGGEEEEEECSSTT
T ss_pred             CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCC---CHHHHHHHccC-ccceEEeeecChhh
Confidence            99999999988777655555677789999998 466643   34555555532 22334555555444

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.59  E-value=4.7e-08  Score=80.00  Aligned_cols=103  Identities=16%  Similarity=0.223  Sum_probs=81.3

Q ss_pred             CCEEEEEcC----ChhHHHHHHHHHhcCCcEEEECCCC--cccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          144 GKSVGIVGL----GRIGTAIAKRVEAFGCPISYHSRSE--KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       144 g~~vgiiG~----G~iG~~~a~~l~~~g~~V~~~~~~~--~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      -++|+|||.    |.+|..+++.|...|++|+.+++..  ....+...+.+++++....|++++++| .+....++.+ .
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~~-~   90 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQE-A   90 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHHH-H
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHHH-H
Confidence            578999999    8999999999999999999999887  555666777789999889999999999 4666666643 3


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGA  253 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga  253 (313)
                      .+ ...++++++.+  ..  ++++.+++++..+...
T Consensus        91 ~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~~i  121 (145)
T 2duw_A           91 IA-IGAKTLWLQLG--VI--NEQAAVLAREAGLSVV  121 (145)
T ss_dssp             HH-HTCCEEECCTT--CC--CHHHHHHHHTTTCEEE
T ss_pred             HH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCEEE
Confidence            33 56677877753  22  7788888888777633

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.54  E-value=3.6e-07  Score=88.94  Aligned_cols=130  Identities=12%  Similarity=0.159  Sum_probs=87.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc--CCcEEEECCCCccc------------c------------cccccCCHHHHHhhCCe
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF--GCPISYHSRSEKSD------------A------------NYKYYTNIIDLASNCQI  198 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~------------~------------~~~~~~~l~~l~~~aDv  198 (313)
                      .+|+|||+|.||..+|..|...  |++|++||++++..            .            ......++.+.+++||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            4899999999999999999887  78999999876421            0            11223567788899999


Q ss_pred             eEEecCCChH--------------hhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh-CCceEEEcc---CCCC
Q 021361          199 LIVACSLTEE--------------THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE-GRLAGAGLD---VYEN  260 (313)
Q Consensus       199 v~l~~p~~~~--------------t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~-g~~~ga~lD---V~~~  260 (313)
                      |++|+|....              ....+ +...+.+++|.++|+.|.-.+-..+.+.+.+.+ .++. ...|   ++.+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~-~~~d~~v~~~P  167 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNN-ENLKFQVLSNP  167 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC-----CCEEEEECC
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcC-cCCceEEEeCc
Confidence            9999986432              22222 345677999999999887666666778888876 4321 1222   2344


Q ss_pred             CCCCCc----ccCCCCcEEE
Q 021361          261 EPEVPE----QMLGLNNVVL  276 (313)
Q Consensus       261 EP~~~~----~l~~~pnvi~  276 (313)
                      |-..+.    .+...+++++
T Consensus       168 e~~~~G~a~~~~~~~~~ivi  187 (481)
T 2o3j_A          168 EFLAEGTAMKDLANPDRVLI  187 (481)
T ss_dssp             CCCCTTCHHHHHHSCSCEEE
T ss_pred             ccccccchhhcccCCCEEEE
Confidence            543332    2455567764

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.52  E-value=5.7e-08  Score=86.53  Aligned_cols=95  Identities=17%  Similarity=0.242  Sum_probs=70.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      +|||||+|.||+.+|+.|...| ++|.+|+|+++..      .+.....++++++ ++|+|++++| ....+.++..  +
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~--l   77 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKN--I   77 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTT--C
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHH--h
Confidence            7999999999999999999999 9999999986532      1334445677777 9999999999 5555544431  1


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      .. + +.++|+++.|--  .+.+.+.+..+
T Consensus        78 ~~-~-~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           78 RT-N-GALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             CC-T-TCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             cc-C-CCEEEEecCCCC--HHHHHHHcCCC
Confidence            12 4 899999865543  36777777654

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.50  E-value=2.3e-07  Score=81.65  Aligned_cols=97  Identities=20%  Similarity=0.224  Sum_probs=74.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcE-EEECCCCcccccccccCCHHHHH-hhCCeeEEecCCChHhhhccCHHHHhhcCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPI-SYHSRSEKSDANYKYYTNIIDLA-SNCQILIVACSLTEETHHIVNRKVIDALGP  223 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V-~~~~~~~~~~~~~~~~~~l~~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~  223 (313)
                      +|||||+|.||+.+++.+...|+++ .++|++.+...   .+.++++++ .++|+|++++|.....+.     ....++.
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~---~~~~~~~l~~~~~DvVv~~~~~~~~~~~-----~~~~l~~   73 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEK---MVRGIDEFLQREMDVAVEAASQQAVKDY-----AEKILKA   73 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCTT---EESSHHHHTTSCCSEEEECSCHHHHHHH-----HHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchhh---hcCCHHHHhcCCCCEEEECCCHHHHHHH-----HHHHHHC
Confidence            7999999999999999998889997 68998753211   467899999 699999999985432221     2455788


Q ss_pred             CcEEEEcCCCCccCH---HHHHHHHHhCCc
Q 021361          224 SGILINIGRGAHIDE---PELVSALLEGRL  250 (313)
Q Consensus       224 ga~~in~~rg~~vd~---~al~~al~~g~~  250 (313)
                      |..+++.+.+..-+.   +.|.++.++.+.
T Consensus        74 G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~  103 (236)
T 2dc1_A           74 GIDLIVLSTGAFADRDFLSRVREVCRKTGR  103 (236)
T ss_dssp             TCEEEESCGGGGGSHHHHHHHHHHHHHHCC
T ss_pred             CCcEEEECcccCChHHHHHHHHHHHHhcCC
Confidence            999999988887666   567777766444

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.50  E-value=3.9e-07  Score=82.22  Aligned_cols=81  Identities=16%  Similarity=0.304  Sum_probs=69.1

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++||++.|||.|. +|+.+|..|...|+.|++++++.         .++++.+++||+|+.+++.    .++|.++.
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  221 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSDM  221 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHTTCSEEEECSSC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhhcCCEEEECCCC----CCcCCHHH
Confidence            4569999999999998 69999999999999999988653         3699999999999999974    44677754


Q ss_pred             HhhcCCCcEEEEcCCCCc
Q 021361          218 IDALGPSGILINIGRGAH  235 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~  235 (313)
                         +|+|+++||+|.-.+
T Consensus       222 ---vk~GavVIDVgi~~~  236 (285)
T 3p2o_A          222 ---VKEGVIVVDVGINRL  236 (285)
T ss_dssp             ---SCTTEEEEECCCEEC
T ss_pred             ---cCCCeEEEEeccCcc
Confidence               599999999997654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.50  E-value=3.2e-07  Score=87.33  Aligned_cols=100  Identities=10%  Similarity=0.101  Sum_probs=76.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cc------------------ccccCCHHHHHhhCCeeEEe
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----AN------------------YKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~------------------~~~~~~l~~l~~~aDvv~l~  202 (313)
                      +|+|||+|.||..+|..|.. |++|+++|++++..     .+                  .....++.+.+++||+|+++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvviia   80 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIA   80 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEEe
Confidence            79999999999999999998 99999999976431     11                  12345677889999999999


Q ss_pred             cCCCh----------HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          203 CSLTE----------ETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       203 ~p~~~----------~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      +|...          .++..+ +.... +++++++|+.+.-++-..+.+.+.+.+.
T Consensus        81 vpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           81 TPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             CCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             cCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            99763          234333 34556 8999999998877776677777776554

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.50  E-value=4e-07  Score=80.11  Aligned_cols=69  Identities=14%  Similarity=0.213  Sum_probs=57.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPS  224 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~g  224 (313)
                      .+|||||+|.||.++|+.|+..|++|.+|++.             ++ +++||  ++++|.. ....++ .+....+++|
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~l~~g   68 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAFARRG   68 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTTCCTT
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHhcCCC
Confidence            58999999999999999999999999999983             12 56899  8889976 555555 4566678999


Q ss_pred             cEEEEcC
Q 021361          225 GILINIG  231 (313)
Q Consensus       225 a~~in~~  231 (313)
                      +++++++
T Consensus        69 ~ivvd~s   75 (232)
T 3dfu_A           69 QMFLHTS   75 (232)
T ss_dssp             CEEEECC
T ss_pred             CEEEEEC
Confidence            9999975

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.49  E-value=4.2e-07  Score=81.59  Aligned_cols=77  Identities=18%  Similarity=0.350  Sum_probs=66.7

Q ss_pred             cCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          142 FSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       142 l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      ++||++.|||.|. +|+.+|+.|.+.|++|++++++.         .++++.+++||+|+.+++.    .+++.++.   
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  211 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT---------KDIGSMTRSSKIVVVAVGR----PGFLNREM---  211 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHHHSSEEEECSSC----TTCBCGGG---
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc---------ccHHHhhccCCEEEECCCC----CccccHhh---
Confidence            8899999999986 79999999999999999988642         4799999999999999975    34677755   


Q ss_pred             cCCCcEEEEcCCCC
Q 021361          221 LGPSGILINIGRGA  234 (313)
Q Consensus       221 mk~ga~~in~~rg~  234 (313)
                      +|+|+++||+|.-.
T Consensus       212 vk~GavVIDvgi~~  225 (276)
T 3ngx_A          212 VTPGSVVIDVGINY  225 (276)
T ss_dssp             CCTTCEEEECCCEE
T ss_pred             ccCCcEEEEeccCc
Confidence            59999999999655

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.49  E-value=3.8e-07  Score=82.37  Aligned_cols=129  Identities=17%  Similarity=0.237  Sum_probs=90.0

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|++++++.         .++.+.+++||+|+.+++.    .+++..+.
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------~~L~~~~~~ADIVI~Avg~----p~lI~~~~  220 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVGK----PGFIPGDW  220 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSCC----TTCBCTTT
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhccCCEEEECCCC----cCcCCHHH
Confidence            4568999999999997 59999999999999999987544         4799999999999999974    33677755


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE  297 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~  297 (313)
                         +|+|+++||+|.-.+-|          |++   .=||-..+      ..+. --.+||==||--.-+..-+.+.++.
T Consensus       221 ---vk~GavVIDVgi~r~~~----------g~l---~GDVdf~~------v~~~-a~~iTPVPGGVGpmT~a~Ll~Ntv~  277 (288)
T 1b0a_A          221 ---IKEGAIVIDVGINRLEN----------GKV---VGDVVFED------AAKR-ASYITPVPGGVGPMTVATLIENTLQ  277 (288)
T ss_dssp             ---SCTTCEEEECCCEECTT----------SCE---ECSBCHHH------HHHH-CSEECCSSSSSHHHHHHHHHHHHHH
T ss_pred             ---cCCCcEEEEccCCccCC----------CCc---cCCcCHHH------Hhhh-ccEecCCCCCccHHHHHHHHHHHHH
Confidence               59999999999765432          433   45662111      0000 2358887677655444444444444


Q ss_pred             HHHHHH
Q 021361          298 NLVAHF  303 (313)
Q Consensus       298 ni~~~~  303 (313)
                      ..++++
T Consensus       278 aa~~~~  283 (288)
T 1b0a_A          278 ACVEYH  283 (288)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            444433

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.49  E-value=4.6e-07  Score=81.74  Aligned_cols=80  Identities=19%  Similarity=0.343  Sum_probs=68.2

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++||++.|||.|. +|+.+|..|...|+.|+++.++.         .++++.+++||+|+.+++.    .++|.++.
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  222 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVGK----PNFITADM  222 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHhcccCCEEEECCCC----CCCCCHHH
Confidence            3469999999999998 69999999999999999987643         3789999999999999974    44677654


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                         +|+|+++||+|.-.
T Consensus       223 ---vk~GavVIDvgi~~  236 (285)
T 3l07_A          223 ---VKEGAVVIDVGINH  236 (285)
T ss_dssp             ---SCTTCEEEECCCEE
T ss_pred             ---cCCCcEEEEecccC
Confidence               59999999999665

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.48  E-value=3.7e-07  Score=84.72  Aligned_cols=100  Identities=16%  Similarity=0.184  Sum_probs=74.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----c-cc--------------cccCCHHHHHhhCCeeEEecC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----A-NY--------------KYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~-~~--------------~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .+|+|||+|.||..+|..|...|++|.+++|+++..     . +.              ....+++++++++|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            589999999999999999999999999999976421     1 10              234678888999999999999


Q ss_pred             CChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          205 LTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      .... ..++ ++....+++++++|+. .|.......+.+.+.+
T Consensus        85 ~~~~-~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           85 AIHH-ASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             GGGH-HHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             chHH-HHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            6543 4444 4456678999999998 4422344445565655

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.48  E-value=3.1e-07  Score=93.53  Aligned_cols=111  Identities=19%  Similarity=0.209  Sum_probs=78.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|||||.|.||..+|..+...|++|++||++++...                +             .....++ +.+++
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  393 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN  393 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence            5799999999999999999999999999999864311                1             1123455 56889


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE  259 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~  259 (313)
                      ||+|+.++|.+.+.+.-+-++..+.++++++++..+.+  +..+.+.+.+... -..+++..|.
T Consensus       394 aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~~-~~~ig~hf~~  454 (715)
T 1wdk_A          394 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKRP-ENFVGMHFFN  454 (715)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSCG-GGEEEEECCS
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcCc-cceEEEEccC
Confidence            99999999988877665555666788999998744333  3445555554321 1224555554

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.48  E-value=2.1e-07  Score=80.17  Aligned_cols=110  Identities=18%  Similarity=0.244  Sum_probs=79.8

Q ss_pred             EEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcccc------c-------ccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          146 SVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDA------N-------YKYYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~-------~~~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      +|+|+| .|.||+.+++.|...|++|.+++|+.+...      +       .. ..+++++++++|+|++++|. ...+.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~-~~~~~   79 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW-EHAID   79 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH-HHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh-hhHHH
Confidence            799999 999999999999999999999999764321      1       11 35688889999999999983 34444


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccC------------HHHHHHHHHhCCceEEEccCCCCCCC
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHID------------EPELVSALLEGRLAGAGLDVYENEPE  263 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd------------~~al~~al~~g~~~ga~lDV~~~EP~  263 (313)
                      ++. +..+.++ +.++|+++.|--.+            .+.+.+.+..  .  ..++.+.+.|.
T Consensus        80 ~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~--~--~~v~~~~~~~~  137 (212)
T 1jay_A           80 TAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES--E--KVVSALHTIPA  137 (212)
T ss_dssp             HHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC--S--CEEECCTTCCH
T ss_pred             HHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC--C--eEEEEccchHH
Confidence            443 3344564 89999999865532            5677776653  2  24677777763

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.47  E-value=2.8e-07  Score=83.36  Aligned_cols=106  Identities=11%  Similarity=0.139  Sum_probs=75.4

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccccc------cccCCHHHHHhhCCeeEEecCCC--hHhhh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDANY------KYYTNIIDLASNCQILIVACSLT--EETHH  211 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~------~~~~~l~~l~~~aDvv~l~~p~~--~~t~~  211 (313)
                      .++|+++.|+|.|.+|++++..|...|+ +|++++|+.++....      ....++.++++++|+|+.++|..  +....
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence            4779999999999999999999999999 899999987653221      11234566678999999999964  22222


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+.   .+.++++.+++|+...+. .. .|+++.++..+.
T Consensus       194 ~l~---~~~l~~~~~V~D~vY~P~-~T-~ll~~A~~~G~~  228 (277)
T 3don_A          194 VIS---LNRLASHTLVSDIVYNPY-KT-PILIEAEQRGNP  228 (277)
T ss_dssp             SSC---CTTCCSSCEEEESCCSSS-SC-HHHHHHHHTTCC
T ss_pred             CCC---HHHcCCCCEEEEecCCCC-CC-HHHHHHHHCcCE
Confidence            233   356889999999987754 33 466655555444

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.46  E-value=7.3e-07  Score=80.45  Aligned_cols=81  Identities=21%  Similarity=0.411  Sum_probs=68.7

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++||++.|||.|. +|+.+|..|...|+.|+++.++.         .++++.+++||+|+.+++.    .+++.++.
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  222 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------RDLADHVSRADLVVVAAGK----PGLVKGEW  222 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHHTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------cCHHHHhccCCEEEECCCC----CCCCCHHH
Confidence            4579999999999987 79999999999999999887643         3689999999999999974    44677755


Q ss_pred             HhhcCCCcEEEEcCCCCc
Q 021361          218 IDALGPSGILINIGRGAH  235 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~  235 (313)
                         +|||+++||+|.-.+
T Consensus       223 ---vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          223 ---IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             ---SCTTCEEEECCSCSS
T ss_pred             ---cCCCeEEEEeccccc
Confidence               599999999997654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.46  E-value=6e-07  Score=87.34  Aligned_cols=102  Identities=11%  Similarity=0.152  Sum_probs=74.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------------cc-------------ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------------AN-------------YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~~-------------~~~~~~l~~l~~~aDvv  199 (313)
                      .+|+|||+|.||..+|..|...|++|++||++++..            .+             .....++++.+++||+|
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDvv   88 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQ   88 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSEE
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCEE
Confidence            489999999999999999999999999999876421            01             12345777889999999


Q ss_pred             EEecCCC---------hHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          200 IVACSLT---------EETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       200 ~l~~p~~---------~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      ++|+|..         ...+..+ +.....+++++++|+.+.-.+=..+.+.+.+.+
T Consensus        89 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           89 FIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            9999863         3344433 345677999999999984434344445555543

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.46  E-value=4.4e-07  Score=82.44  Aligned_cols=81  Identities=15%  Similarity=0.249  Sum_probs=68.1

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHH--HHHhhCCeeEEecCCChHhhhccCH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNII--DLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~--~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      +.+++||++.|||.|. +|+.+|..|...|++|++++++..         +++  +.+++||+|+.+++.    .+++.+
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~---------~l~l~~~~~~ADIVI~Avg~----p~~I~~  226 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS---------TEDMIDYLRTADIVIAAMGQ----PGYVKG  226 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC---------HHHHHHHHHTCSEEEECSCC----TTCBCG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC---------CchhhhhhccCCEEEECCCC----CCCCcH
Confidence            3468999999999988 799999999999999999987432         466  999999999999985    346776


Q ss_pred             HHHhhcCCCcEEEEcCCCCc
Q 021361          216 KVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~  235 (313)
                      +.   +|+|+++||+|.-.+
T Consensus       227 ~~---vk~GavVIDvgi~~~  243 (300)
T 4a26_A          227 EW---IKEGAAVVDVGTTPV  243 (300)
T ss_dssp             GG---SCTTCEEEECCCEEE
T ss_pred             Hh---cCCCcEEEEEeccCC
Confidence            54   699999999996543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.45  E-value=7.3e-07  Score=80.99  Aligned_cols=135  Identities=17%  Similarity=0.240  Sum_probs=90.7

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|++++++.         .++.+.+++||+|+.+++.    .++|..+.
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  226 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------AHLDEEVNKGDILVVATGQ----PEMVKGEW  226 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc---------ccHHHHhccCCEEEECCCC----cccCCHHH
Confidence            4579999999999996 69999999999999999987543         4799999999999999976    34677765


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEG-RLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVI  296 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g-~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~  296 (313)
                         +|||+++||+|.-.+-|..     -++| ++-   =||-..+      ..+. --.+||==||--.-+..-+.+.++
T Consensus       227 ---vk~GavVIDVgi~~~~d~~-----~~~g~klv---GDVdf~~------v~~~-a~~iTPVPGGVGpmTiamLl~Ntv  288 (301)
T 1a4i_A          227 ---IKPGAIVIDCGINYVPDDK-----KPNGRKVV---GDVAYDE------AKER-ASFITPVPGGVGPMTVAMLMQSTV  288 (301)
T ss_dssp             ---SCTTCEEEECCCBC---------------CCB---CSBCHHH------HTTT-CSEECCSSSSHHHHHHHHHHHHHH
T ss_pred             ---cCCCcEEEEccCCCccccc-----ccCCCeee---ccccHHH------hhhh-ceEeCCCCCCccHHHHHHHHHHHH
Confidence               5899999999986643321     1233 332   3662111      1111 245888777755544444445555


Q ss_pred             HHHHHHHc
Q 021361          297 ENLVAHFS  304 (313)
Q Consensus       297 ~ni~~~~~  304 (313)
                      ...++++.
T Consensus       289 ~aa~~~~~  296 (301)
T 1a4i_A          289 ESAKRFLE  296 (301)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            55555544

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.45  E-value=2.1e-07  Score=87.24  Aligned_cols=92  Identities=15%  Similarity=0.196  Sum_probs=72.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----c--------c------ccccCCHHHHHhhCCeeEEecC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----A--------N------YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~--------~------~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      -.+|+|||.|.||..+|..|...|++|..|+|+++..     .        +      .....++++.+++||+|++++|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            3589999999999999999999999999999975421     0        0      1234688899999999999998


Q ss_pred             CChHhhhccCHHHHhhcCCCcEEEEcCCCCccC
Q 021361          205 LTEETHHIVNRKVIDALGPSGILINIGRGAHID  237 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd  237 (313)
                      . ...+.++ ++....+++++++|++..|-..+
T Consensus       109 ~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          109 S-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred             H-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence            5 3445444 34566788999999998876554

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.45  E-value=3.4e-07  Score=85.10  Aligned_cols=90  Identities=24%  Similarity=0.275  Sum_probs=69.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcC-------CcEEEECCCCc-----ccc-------------------cccccCCHHHH
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFG-------CPISYHSRSEK-----SDA-------------------NYKYYTNIIDL  192 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g-------~~V~~~~~~~~-----~~~-------------------~~~~~~~l~~l  192 (313)
                      .++|+|||.|.||..+|..|...|       ++|.+|+|+.+     ...                   ......+++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            358999999999999999999888       89999999875     210                   01223578888


Q ss_pred             HhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          193 ASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       193 ~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                      +++||+|++++|. .....++ ++....+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            9999999999995 3444444 335566788999999988754

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.44  E-value=2.9e-07  Score=84.70  Aligned_cols=90  Identities=12%  Similarity=0.190  Sum_probs=70.0

Q ss_pred             cccccCCCEEEEEcCChh-HHHHHHHHHhcCCcEEEECCCCccc------ccc--c-c-----c--CCHHHHHhhCCeeE
Q 021361          138 LGSKFSGKSVGIVGLGRI-GTAIAKRVEAFGCPISYHSRSEKSD------ANY--K-Y-----Y--TNIIDLASNCQILI  200 (313)
Q Consensus       138 ~~~~l~g~~vgiiG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~------~~~--~-~-----~--~~l~~l~~~aDvv~  200 (313)
                      ++.+++|+++.|||.|.| |+.+|+.|.+.|++|++++|+....      ...  . .     .  .++.+.+++||+|+
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI  250 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  250 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence            466899999999999975 9999999999999999999873211      111  1 1     1  46889999999999


Q ss_pred             EecCCChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          201 VACSLTEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       201 l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      .+++..   ..+|..+.   +|+|+++||+|..
T Consensus       251 sAtg~p---~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          251 TGVPSE---NYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             ECCCCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred             ECCCCC---cceeCHHH---cCCCeEEEEcCCC
Confidence            999752   22377655   5899999999865

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.43  E-value=6.9e-07  Score=86.56  Aligned_cols=111  Identities=17%  Similarity=0.218  Sum_probs=76.8

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc---------------------------ccccCCHHHHHhhC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN---------------------------YKYYTNIIDLASNC  196 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~---------------------------~~~~~~l~~l~~~a  196 (313)
                      =++|||||.|.||..+|..|...|++|++||++.+....                           .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            468999999999999999999999999999998642110                           0123456 467899


Q ss_pred             CeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCC
Q 021361          197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVY  258 (313)
Q Consensus       197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~  258 (313)
                      |+|+.++|.+.+.+.-+-++..+.++++++|+.. ..+ +....+.+.+... -..++...|
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~sn-Ts~-~~~~~la~~~~~~-~~~ig~hf~  174 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTN-TSA-LNVDDIASSTDRP-QLVIGTHFF  174 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC-CSS-SCHHHHHTTSSCG-GGEEEEEEC
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeC-CCC-cCHHHHHHHhcCC-cceEEeecC
Confidence            9999999987655554445566778999999873 333 3445666655432 222344545

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.43  E-value=2.2e-07  Score=87.45  Aligned_cols=88  Identities=16%  Similarity=0.247  Sum_probs=67.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC-------CcEEEECCCCc-----ccc-------------------cccccCCHHHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG-------CPISYHSRSEK-----SDA-------------------NYKYYTNIIDLA  193 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g-------~~V~~~~~~~~-----~~~-------------------~~~~~~~l~~l~  193 (313)
                      ++|+|||.|.||..+|..|...|       .+|.+|+|+++     ...                   +.....++++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            37999999999999999998888       89999999765     210                   112345788889


Q ss_pred             hhCCeeEEecCCChHhhhccCHHHHh----hcCCCcEEEEcCCCC
Q 021361          194 SNCQILIVACSLTEETHHIVNRKVID----ALGPSGILINIGRGA  234 (313)
Q Consensus       194 ~~aDvv~l~~p~~~~t~~~i~~~~l~----~mk~ga~~in~~rg~  234 (313)
                      ++||+|++++|. ...+.++. +...    .+++++++|+++.|-
T Consensus       102 ~~aDvVilav~~-~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          102 NDADLLIFIVPC-QYLESVLA-SIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             TTCSEEEECCCH-HHHHHHHH-HHTC---CCCCTTCEEEECCCSC
T ss_pred             cCCCEEEEcCCH-HHHHHHHH-HHhhhhhccCCCCCEEEEeCCcc
Confidence            999999999994 45554443 3444    678899999998773

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.43  E-value=6.5e-07  Score=80.57  Aligned_cols=82  Identities=15%  Similarity=0.338  Sum_probs=69.0

Q ss_pred             ccccCCCEEEEEcCChh-HHHHHHHHHhc--CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          139 GSKFSGKSVGIVGLGRI-GTAIAKRVEAF--GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~i-G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      +.+++||++.|||.|.+ |+.+|+.|...  |++|+++.++.         .++.+.+++||+|+.+++.    .++|.+
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~  219 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------RDLPALTRQADIVVAAVGV----AHLLTA  219 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------SCHHHHHTTCSEEEECSCC----TTCBCG
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------hHHHHHHhhCCEEEECCCC----CcccCH
Confidence            44699999999999985 99999999999  89999987654         4799999999999999974    336777


Q ss_pred             HHHhhcCCCcEEEEcCCCCcc
Q 021361          216 KVIDALGPSGILINIGRGAHI  236 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~v  236 (313)
                      +.   +|+|+++||+|.-.+-
T Consensus       220 ~~---vk~GavVIDVgi~r~~  237 (281)
T 2c2x_A          220 DM---VRPGAAVIDVGVSRTD  237 (281)
T ss_dssp             GG---SCTTCEEEECCEEEET
T ss_pred             HH---cCCCcEEEEccCCCCC
Confidence            65   5899999999976543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.43  E-value=4.4e-07  Score=81.52  Aligned_cols=86  Identities=15%  Similarity=0.207  Sum_probs=64.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc--------cc----cccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA--------NY----KYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~~----~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      +|+|||+|.||..+|..|...|++|.+|+|+.+...        +.    ....+..+.++++|+|++++|.. .+...+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v~   80 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDAV   80 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHHH
Confidence            799999999999999999999999999999875321        11    01122346778999999999965 345444


Q ss_pred             CHHHHhhcCCCcEEEEcCCC
Q 021361          214 NRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg  233 (313)
                       ++....+++++++|++..|
T Consensus        81 -~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           81 -KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             -HHHHTTSCTTSCEEEECSS
T ss_pred             -HHHHhhCCCCCEEEEecCC
Confidence             3456678889999998665

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.42  E-value=3.5e-07  Score=79.67  Aligned_cols=86  Identities=23%  Similarity=0.323  Sum_probs=62.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEE-ECCCCcccc------cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISY-HSRSEKSDA------NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      .+|+|||+|.||..+|+.|...|++|.+ ++|+++...      +.....+..+.++++|+|++++|. .....++.. .
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~~-l  101 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVTQ-V  101 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHTT-C
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHHH-h
Confidence            5899999999999999999999999988 999876432      222234556678999999999984 233333321 1


Q ss_pred             HhhcCCCcEEEEcCCCC
Q 021361          218 IDALGPSGILINIGRGA  234 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~  234 (313)
                       ..+ ++.++|+++-|-
T Consensus       102 -~~~-~~~ivi~~~~g~  116 (220)
T 4huj_A          102 -SDW-GGQIVVDASNAI  116 (220)
T ss_dssp             -SCC-TTCEEEECCCCB
T ss_pred             -hcc-CCCEEEEcCCCC
Confidence             123 588999998654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.40  E-value=1.1e-07  Score=88.90  Aligned_cols=90  Identities=12%  Similarity=0.155  Sum_probs=68.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-------------------cccccCCHHHHHhhCCeeEEecCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------------------NYKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------------------~~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +|+|||+|.||..+|..|...|++|.+|+|+.+...                   +.....+++++++.+|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            899999999999999999999999999999764210                   122335788899999999999984 


Q ss_pred             hHhhhccCHH---HHhhcCC-CcEEEEcCCCCcc
Q 021361          207 EETHHIVNRK---VIDALGP-SGILINIGRGAHI  236 (313)
Q Consensus       207 ~~t~~~i~~~---~l~~mk~-ga~~in~~rg~~v  236 (313)
                      .....++...   ....+++ ++++|+++.|-..
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            4555554331   4456778 9999999876433

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.39  E-value=3.1e-07  Score=84.48  Aligned_cols=99  Identities=11%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECC--CCccc-----ccc-----------cccC--CHHHHHhhCCeeEEecCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSR--SEKSD-----ANY-----------KYYT--NIIDLASNCQILIVACSL  205 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~--~~~~~-----~~~-----------~~~~--~l~~l~~~aDvv~l~~p~  205 (313)
                      +|+|||+|.||..+|..|...|++|.+|+|  +++..     .+.           ....  ++.+.++++|+|++++|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST   81 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCCh
Confidence            799999999999999999999999999999  65321     111           2233  677888999999999996


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCCC---cc-CHHHHHHHHHh
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRGA---HI-DEPELVSALLE  247 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg~---~v-d~~al~~al~~  247 (313)
                      . .+..++ .+... +++++++|+++.|-   -. ..+.+.+.+.+
T Consensus        82 ~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           82 D-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             G-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             H-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            4 444444 33556 88899999998774   11 22445555544

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.39  E-value=5.4e-07  Score=87.48  Aligned_cols=99  Identities=14%  Similarity=0.164  Sum_probs=75.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CC-cEEEECCCCc----cc----c----------------------c-ccccCCHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GC-PISYHSRSEK----SD----A----------------------N-YKYYTNIID  191 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~-~V~~~~~~~~----~~----~----------------------~-~~~~~~l~~  191 (313)
                      .+|+|||+|.||..+|..|... |+ +|++||++++    ..    .                      + ....++ .+
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~e   97 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FS   97 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GG
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HH
Confidence            5899999999999999999999 99 9999999877    21    0                      0 111234 56


Q ss_pred             HHhhCCeeEEecCCCh--------Hhhhcc--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHH
Q 021361          192 LASNCQILIVACSLTE--------ETHHIV--NRKVIDALGPSGILINIGRGAHIDEPELVSA  244 (313)
Q Consensus       192 l~~~aDvv~l~~p~~~--------~t~~~i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~a  244 (313)
                      .+++||+|++|+|...        +...+.  .+...+.+++|.++|+.|.-.+-..+.+.+.
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence            7889999999999652        222222  2456778999999999998777777777653

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.39  E-value=8.3e-07  Score=90.50  Aligned_cols=111  Identities=17%  Similarity=0.120  Sum_probs=77.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|||||.|.||..+|..+...|++|++||++++...                +             .....++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            5799999999999999999999999999999864210                1             0123455 46889


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE  259 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~  259 (313)
                      ||+|+.++|.+.+.+.-+-++..+.++++++++..+.+  +..+.+.+.+... -..++...|.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~p-~~~iG~hf~~  452 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKSQ-DRIVGAHFFS  452 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSCT-TTEEEEEECS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcCC-CCEEEecCCC
Confidence            99999999988776655555667789999998644333  3344555544321 1223445455

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.38  E-value=8.2e-07  Score=79.27  Aligned_cols=99  Identities=19%  Similarity=0.189  Sum_probs=74.4

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc------ccccCCHHHHHhhCCeeEEecCCC--hHhhhc
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN------YKYYTNIIDLASNCQILIVACSLT--EETHHI  212 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~------~~~~~~l~~l~~~aDvv~l~~p~~--~~t~~~  212 (313)
                      ++| +++|||.|.+|++++..|...|+ +|++++|+.++...      .....++.+.++++|+|++++|..  ++ ...
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~~~  184 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-ELP  184 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-CCS
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-CCC
Confidence            578 99999999999999999999999 89999998754221      112456788899999999999863  22 123


Q ss_pred             cCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       213 i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      +..   +.++++.+++++.-+   ..+-+.++.+.|
T Consensus       185 i~~---~~l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          185 VSD---DSLKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CCH---HHHTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CCH---HHhCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            443   336789999999988   455555565555

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.36  E-value=8.7e-07  Score=80.91  Aligned_cols=106  Identities=14%  Similarity=0.194  Sum_probs=75.7

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc------cc---cc--cCCHHHHHhhCCeeEEecCCChH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA------NY---KY--YTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~------~~---~~--~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      .+.|++++|+|.|.+|+.++..|...|+ +|++++|+.++..      +.   ..  ..++.+.+.++|+|+.++|....
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence            4778999999999999999999999998 8999999865321      11   11  12455667899999999997532


Q ss_pred             hh--h-ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          209 TH--H-IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       209 t~--~-~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ..  . .++   .+.++++.+++|++..+ ... .|.+..++..+.
T Consensus       218 ~~~~~~~i~---~~~l~~~~~v~D~~y~P-~~T-~ll~~A~~~G~~  258 (297)
T 2egg_A          218 PRVEVQPLS---LERLRPGVIVSDIIYNP-LET-KWLKEAKARGAR  258 (297)
T ss_dssp             SCCSCCSSC---CTTCCTTCEEEECCCSS-SSC-HHHHHHHHTTCE
T ss_pred             CCCCCCCCC---HHHcCCCCEEEEcCCCC-CCC-HHHHHHHHCcCE
Confidence            11  1 133   24578999999999853 333 366666665554

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.34  E-value=3.3e-07  Score=84.77  Aligned_cols=82  Identities=16%  Similarity=0.282  Sum_probs=64.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cc-----------ccccCCHHHHHhhCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----AN-----------YKYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~-----------~~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      .+|+|||.|.||..+|..|...|++|.+|+|+++..     .+           .....++++ ++.+|+|++++|. ..
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~~   92 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-QY   92 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-GG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-HH
Confidence            489999999999999999999999999999976431     11           233467788 8899999999994 55


Q ss_pred             hhhccCHHHHhhcC-CCcEEEEcCCC
Q 021361          209 THHIVNRKVIDALG-PSGILINIGRG  233 (313)
Q Consensus       209 t~~~i~~~~l~~mk-~ga~~in~~rg  233 (313)
                      ++..+.     .++ +++++|+++.|
T Consensus        93 ~~~v~~-----~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           93 IREHLL-----RLPVKPSMVLNLSKG  113 (335)
T ss_dssp             HHHHHT-----TCSSCCSEEEECCCC
T ss_pred             HHHHHH-----HhCcCCCEEEEEeCC
Confidence            554443     233 78999999876

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.33  E-value=1.1e-06  Score=84.25  Aligned_cols=106  Identities=14%  Similarity=0.213  Sum_probs=76.0

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccc------cccCCHHHH---------------HhhCCeeE
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY------KYYTNIIDL---------------ASNCQILI  200 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~------~~~~~l~~l---------------~~~aDvv~  200 (313)
                      -+|.++.|||+|.||..+|..|...|++|++||+++++....      .....++++               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            468899999999999999999999999999999987642110      011233333               34699999


Q ss_pred             EecCCChHh--------hhcc--CHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          201 VACSLTEET--------HHIV--NRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       201 l~~p~~~~t--------~~~i--~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      +|+|.....        ..+.  .+...+.|++|.++|+.|.-.+=..+.+.+.+.+
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e  145 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIE  145 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHH
Confidence            999965422        1222  2456778999999999998888777787776543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.32  E-value=4.1e-07  Score=82.62  Aligned_cols=104  Identities=9%  Similarity=0.125  Sum_probs=72.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccc------------cCCHHHHHh---hCCeeEEecC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKY------------YTNIIDLAS---NCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~------------~~~l~~l~~---~aDvv~l~~p  204 (313)
                      .+|+|||.|.||..+|..|...|++|.+|+|+++...     +...            ..+.+++.+   ++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            4799999999999999999999999999999764311     1110            113344444   8999999998


Q ss_pred             CChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          205 LTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      . ..+..++ ++....+++++++|+++.|- -..+.+.+.+.+.++.
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            4 3455444 34556788999999997653 2345566666554443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.19  E-value=1.2e-06  Score=78.73  Aligned_cols=104  Identities=18%  Similarity=0.175  Sum_probs=71.9

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccc-c---ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY-K---YYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-~---~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      |+++.|+|.|.+|++++..|...|.+|++++|+.++.... .   ...+++++ .++|+|+.++|..-.....+..+.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l~  196 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPK-SAFDLIINATSASLHNELPLNKEVLK  196 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCS-SCCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHh-ccCCEEEEcccCCCCCCCCCChHHHH
Confidence            7899999999999999999999998899999987653211 0   01122232 28999999999753222345555333


Q ss_pred             -hcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          220 -ALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       220 -~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                       .++++.+++|+...+  ... |+++.++..+.
T Consensus       197 ~~l~~~~~v~D~vY~P--~T~-ll~~A~~~G~~  226 (269)
T 3phh_A          197 GYFKEGKLAYDLAYGF--LTP-FLSLAKELKTP  226 (269)
T ss_dssp             HHHHHCSEEEESCCSS--CCH-HHHHHHHTTCC
T ss_pred             hhCCCCCEEEEeCCCC--chH-HHHHHHHCcCE
Confidence             678899999998876  444 55555554443

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.16  E-value=2.6e-06  Score=80.89  Aligned_cols=90  Identities=26%  Similarity=0.330  Sum_probs=69.8

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc------c-----cccccccCCHHHHHhhCCeeEEecCCChHh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK------S-----DANYKYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~------~-----~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      -|+||+|+|||||+.|++=|..|+..|.+|.+=-|...      +     ..+.. ..+..|++++||+|++.+|...+.
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~-v~~~~eA~~~ADvV~~L~PD~~q~  112 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQADLVINLTPDKQHS  112 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCE-EEEHHHHGGGCSEEEECSCGGGHH
T ss_pred             HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCE-ecCHHHHHHhCCEEEEeCChhhHH
Confidence            48999999999999999999999999999876554211      0     12333 357999999999999999975443


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      . ++ ++....||+|+.+. .+.|=
T Consensus       113 ~-vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          113 D-VV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             H-HH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             H-HH-HHHHhhCCCCCEEE-ecCcc
Confidence            3 34 46889999999876 56664

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.14  E-value=6.5e-06  Score=66.72  Aligned_cols=102  Identities=18%  Similarity=0.235  Sum_probs=75.9

Q ss_pred             CCCEEEEEcC----ChhHHHHHHHHHhcCCcEEEECCC--CcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361          143 SGKSVGIVGL----GRIGTAIAKRVEAFGCPISYHSRS--EKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       143 ~g~~vgiiG~----G~iG~~~a~~l~~~g~~V~~~~~~--~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      +-++|+|||.    |.+|..+++.|+..|++|+-.++.  .+...+...+.+++++....|++++++|. +.....++ +
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~-~   89 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP-E   89 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH-H
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH-H
Confidence            3578999999    899999999999999997777776  44445666678899998899999999986 56666664 3


Q ss_pred             HHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          217 VIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ..+ .....++++.+-.    ++++.+..++..+.
T Consensus        90 ~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           90 VLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             HHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             HHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            333 3344666654332    57778888877665

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.11  E-value=1.1e-05  Score=77.44  Aligned_cols=133  Identities=14%  Similarity=0.136  Sum_probs=86.2

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------------cc-------------ccccCCHHHHHhhCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------------AN-------------YKYYTNIIDLASNCQ  197 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~~-------------~~~~~~l~~l~~~aD  197 (313)
                      +=++|+|||+|-+|..+|..|...|++|+++|..+++.            .+             ..+.++.++.++.||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            34689999999999999999999999999999875421            01             123467889999999


Q ss_pred             eeEEecCCChHhhhccC--------HHHHhhcC---CCcEEEEcCCCCccCHHHHHH-HHHhCCceEEEccC-CCCCCCC
Q 021361          198 ILIVACSLTEETHHIVN--------RKVIDALG---PSGILINIGRGAHIDEPELVS-ALLEGRLAGAGLDV-YENEPEV  264 (313)
Q Consensus       198 vv~l~~p~~~~t~~~i~--------~~~l~~mk---~ga~~in~~rg~~vd~~al~~-al~~g~~~ga~lDV-~~~EP~~  264 (313)
                      ++++|+|......+-.|        +..-+.|+   +|.++|.-|.-.+=-.+.+.. .+.+.. .+.-.+| +.+|-+.
T Consensus       100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~PErl~  178 (444)
T 3vtf_A          100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNPEFLR  178 (444)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECCCCCC
T ss_pred             ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCccccc
Confidence            99999984322222122        22223343   688999988876655555443 333322 2122222 4677655


Q ss_pred             Cc----ccCCCCcEEE
Q 021361          265 PE----QMLGLNNVVL  276 (313)
Q Consensus       265 ~~----~l~~~pnvi~  276 (313)
                      +.    .+...|++++
T Consensus       179 eG~a~~d~~~~~riVi  194 (444)
T 3vtf_A          179 EGSALEDFFKPDRIVI  194 (444)
T ss_dssp             TTSHHHHHHSCSCEEE
T ss_pred             CCccccccccCCcEEE
Confidence            53    3667778763

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.10  E-value=1.1e-05  Score=65.70  Aligned_cols=101  Identities=16%  Similarity=0.177  Sum_probs=75.6

Q ss_pred             CCEEEEEcC----ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          144 GKSVGIVGL----GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       144 g~~vgiiG~----G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      -++|+|||.    |.+|..+++.|+..|++|+-.++......+...+.+++++....|++++++|. +....++. +..+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~-~~~~   99 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-QAIK   99 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-HHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-HHHH
Confidence            689999999    79999999999999999887777654445666678899998899999999986 55555554 2333


Q ss_pred             hcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          220 ALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                       .....++++.+  .  .++.+.+.+++..+.
T Consensus       100 -~gi~~i~~~~g--~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A          100 -KGAKVVWFQYN--T--YNREASKKADEAGLI  126 (144)
T ss_dssp             -HTCSEEEECTT--C--CCHHHHHHHHHTTCE
T ss_pred             -cCCCEEEECCC--c--hHHHHHHHHHHcCCE
Confidence             33446665533  2  367788888877665

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.10  E-value=1.1e-05  Score=74.12  Aligned_cols=84  Identities=23%  Similarity=0.318  Sum_probs=65.5

Q ss_pred             CCEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCcccc---------cc--cccCCHHHHHhhCCeeEEecCCChHhh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSDA---------NY--KYYTNIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~---------~~--~~~~~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      .++++|||.|.+|+..++.|.. ++. +|.+|||+ +...         +.  ..+ ++++++++||+|++|+|..   .
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---~  195 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---T  195 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---S
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---C
Confidence            5799999999999999999876 444 69999999 4221         22  234 8999999999999999864   3


Q ss_pred             hccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          211 HIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                      .++..   +.++||+.++++|....
T Consensus       196 pvl~~---~~l~~G~~V~~vGs~~p  217 (313)
T 3hdj_A          196 PLFAG---QALRAGAFVGAIGSSLP  217 (313)
T ss_dssp             CSSCG---GGCCTTCEEEECCCSST
T ss_pred             cccCH---HHcCCCcEEEECCCCCC
Confidence            55654   45899999999986543

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.08  E-value=7.2e-06  Score=76.52  Aligned_cols=87  Identities=15%  Similarity=0.204  Sum_probs=66.5

Q ss_pred             CCCEEEEEcCChhHHHHHHHHH-hcC-CcEEEECCCCcccc----------c--ccccCCHHHHHhhCCeeEEecCCChH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVE-AFG-CPISYHSRSEKSDA----------N--YKYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~-~~g-~~V~~~~~~~~~~~----------~--~~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      ..+++||||.|.+|+.+++.+. ..+ .+|.+|||+.++..          +  ...+.++++++++||+|++++|.. .
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-~  206 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-A  206 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-S
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-C
Confidence            4679999999999999998875 344 46999999865321          2  233578999999999999999975 2


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          209 THHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      ...++..   +.+++|..++++|..
T Consensus       207 ~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             EEEEECG---GGCCTTCEEEECSCC
T ss_pred             CCceecH---HHcCCCCEEEECCCC
Confidence            3345554   457899999999864

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.05  E-value=4.8e-06  Score=78.50  Aligned_cols=83  Identities=18%  Similarity=0.224  Sum_probs=69.7

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCC---cEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGC---PISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~---~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      ...+|.|||. |..|+..++.++++|+   .|.++|++.... +..    + +.++++|+|+.++......-.++.++.+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~-g~~----~-~~i~~aDivIn~vlig~~aP~Lvt~e~v  286 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR-GGP----F-DEIPQADIFINCIYLSKPIAPFTNMEKL  286 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT-CSC----C-THHHHSSEEEECCCCCSSCCCSCCHHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc-CCc----h-hhHhhCCEEEECcCcCCCCCcccCHHHH
Confidence            4678999999 9999999999999998   899999876222 221    2 3466999999999986666678999999


Q ss_pred             hhc-CCCcEEEEcC
Q 021361          219 DAL-GPSGILINIG  231 (313)
Q Consensus       219 ~~m-k~ga~~in~~  231 (313)
                      +.| |||+++||++
T Consensus       287 ~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          287 NNPNRRLRTVVDVS  300 (394)
T ss_dssp             CCTTCCCCEEEETT
T ss_pred             hcCcCCCeEEEEEe
Confidence            999 9999999996

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.04  E-value=2.5e-05  Score=63.77  Aligned_cols=94  Identities=13%  Similarity=0.047  Sum_probs=61.5

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------cccc----cCCHHH---H-HhhCCeeEEecC
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------NYKY----YTNIID---L-ASNCQILIVACS  204 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~~~~----~~~l~~---l-~~~aDvv~l~~p  204 (313)
                      ...+.+++|.|+|+|.+|+.+++.|+..|++|.+++++++...      +...    ..+.+.   . +.++|+|++++|
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTN   93 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC
Confidence            3457789999999999999999999999999999998765321      1111    112222   2 567999999998


Q ss_pred             CChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          205 LTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      ....+..  -......+.+...++-..++.
T Consensus        94 ~~~~~~~--~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           94 DDSTNFF--ISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             CHHHHHH--HHHHHHHTSCCSEEEEECSSG
T ss_pred             CcHHHHH--HHHHHHHHCCCCeEEEEECCH
Confidence            6433332  222444445556666655554

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.03  E-value=1.3e-05  Score=73.84  Aligned_cols=102  Identities=13%  Similarity=0.101  Sum_probs=78.8

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----------------c----c----------ccccCCHHHHH
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----------------A----N----------YKYYTNIIDLA  193 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------------~----~----------~~~~~~l~~l~  193 (313)
                      -.+|+|||.|.||+.+|..+...|++|..||++++..                .    +          ...+.++++.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            4689999999999999999999999999999876421                0    0          11246788999


Q ss_pred             hhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          194 SNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       194 ~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      +.||+|+=++|-+-+.+.-+-++.=+.++++++|-...++  +....+.+.++.
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~  137 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH  137 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC
Confidence            9999999999998888877766666778999987554333  556777766543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.01  E-value=6.9e-06  Score=68.92  Aligned_cols=90  Identities=17%  Similarity=0.185  Sum_probs=62.9

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhc-CCcEEEECCCCccc-----ccccc----cCCH---HHH--HhhCCeeEEecC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAF-GCPISYHSRSEKSD-----ANYKY----YTNI---IDL--ASNCQILIVACS  204 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~-----~~~~~----~~~l---~~l--~~~aDvv~l~~p  204 (313)
                      ..+.+.+|+|+|+|.+|+.+|+.|+.. |++|.++|++++..     .+...    ..+.   .++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            357788999999999999999999999 99999999987532     12221    1222   223  567899999998


Q ss_pred             CChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          205 LTEETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ....+..++  ..+..+.+...++...
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEEE
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEEE
Confidence            755554333  3455666666666543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.98  E-value=3.4e-05  Score=72.38  Aligned_cols=91  Identities=14%  Similarity=0.216  Sum_probs=74.2

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC----Ccccc---------------cccccCCHHHHHhhCCe
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS----EKSDA---------------NYKYYTNIIDLASNCQI  198 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~----~~~~~---------------~~~~~~~l~~l~~~aDv  198 (313)
                      |+.+.+.+|.|+|.|.+|..+|+.|...|. +|+++|++    .+...               ......++.+.++++|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            456889999999999999999999999999 69999997    32210               01113579999999999


Q ss_pred             eEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          199 LIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       199 v~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      ++-+.  .   .+++.++.++.|+++++++.+|+..
T Consensus       267 lIG~S--a---p~l~t~emVk~Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          267 FIGVS--R---GNILKPEWIKKMSRKPVIFALANPV  297 (388)
T ss_dssp             EEECS--C---SSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             EEEeC--C---CCccCHHHHHhcCCCCEEEEcCCCC
Confidence            88764  1   3899999999999999999999754

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.98  E-value=7.9e-07  Score=80.07  Aligned_cols=80  Identities=14%  Similarity=0.059  Sum_probs=54.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcE-EEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPI-SYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V-~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      +|||||+|.||+.+++.|... ++| .+|+|+.+..      .+. ...+++++++++|+|++++|... ..     +.+
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~~-----~v~   75 (276)
T 2i76_A            4 VLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-IK-----TVA   75 (276)
T ss_dssp             CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-HH-----HHH
T ss_pred             eEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-HH-----HHH
Confidence            699999999999999999877 888 5899986532      122 44567778889999999999753 22     233


Q ss_pred             hhc-CCCcEEEEcCCC
Q 021361          219 DAL-GPSGILINIGRG  233 (313)
Q Consensus       219 ~~m-k~ga~~in~~rg  233 (313)
                      ..+ +++.++|+++-+
T Consensus        76 ~~l~~~~~ivi~~s~~   91 (276)
T 2i76_A           76 NHLNLGDAVLVHCSGF   91 (276)
T ss_dssp             TTTCCSSCCEEECCSS
T ss_pred             HHhccCCCEEEECCCC
Confidence            333 688999999855

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.95  E-value=8.8e-06  Score=74.75  Aligned_cols=100  Identities=17%  Similarity=0.247  Sum_probs=68.3

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cc-------------ccccCCHHHHHhhCCeeEEec
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----AN-------------YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~-------------~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      ...++|+|||.|.||..+|..|...|.+|..| ++++..     .+             .....++++ ++.+|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            34579999999999999999999999999999 654321     11             111245544 57899999999


Q ss_pred             CCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361          204 SLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALL  246 (313)
Q Consensus       204 p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~  246 (313)
                      |.. .++..+ ++....+++++++|.+.-|= -.++.+.+.+.
T Consensus        95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~~  134 (318)
T 3hwr_A           95 KST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLLE  134 (318)
T ss_dssp             CGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHCC
T ss_pred             ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHcC
Confidence            965 555444 33445678899999987662 22345555554

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.93  E-value=5.7e-06  Score=75.25  Aligned_cols=100  Identities=13%  Similarity=0.197  Sum_probs=69.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-----C-CcEEEECCCCcc-----c-ccccccC-------------CHHHHHhhCCee
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-----G-CPISYHSRSEKS-----D-ANYKYYT-------------NIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-----g-~~V~~~~~~~~~-----~-~~~~~~~-------------~l~~l~~~aDvv  199 (313)
                      .+|+|||+|.||..+|..|...     | ++|++|+| .+.     . .+.....             +..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            3799999999999999999988     9 99999998 432     1 1221111             334567899999


Q ss_pred             EEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCH-HHHHHHHHhCC
Q 021361          200 IVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE-PELVSALLEGR  249 (313)
Q Consensus       200 ~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~-~al~~al~~g~  249 (313)
                      ++++|... +...+ ++....+++++++|.+.-|  +.. +.+.+.+.+.+
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCTTT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCCCc
Confidence            99999754 34443 3345567788999998776  343 55555554433

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.91  E-value=1e-05  Score=74.82  Aligned_cols=87  Identities=18%  Similarity=0.282  Sum_probs=65.0

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccc-------------cccCCHHHHHhhCCeeEEecCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANY-------------KYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~-------------~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ..+|+|||.|.||..+|..|...|.+|.+++|.....    .+.             ....++++ +..+|+|++++|. 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence            3589999999999999999999999999999853210    111             11346666 5889999999986 


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      ..++..+. .....+++++++|.+..|
T Consensus        81 ~~~~~~~~-~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           81 PALESVAA-GIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             HHHHHHHG-GGSSSCCTTCEEEECCSS
T ss_pred             hhHHHHHH-HHHhhCCCCCEEEEECCC
Confidence            45554443 344557889999999888

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.89  E-value=4.5e-05  Score=69.16  Aligned_cols=79  Identities=14%  Similarity=0.301  Sum_probs=66.0

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++||++.|||-++ +|+.+|.+|...|+.|+.+....         .++.+.+++||+|+.++.-    .+++..+.
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T---------~dl~~~~~~ADIvV~A~G~----p~~i~~d~  240 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT---------QNLPELVKQADIIVGAVGK----AELIQKDW  240 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHHTCSEEEECSCS----TTCBCGGG
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC---------CCHHHHhhcCCeEEeccCC----CCcccccc
Confidence            4579999999999887 59999999999999998876533         3799999999999998743    56788754


Q ss_pred             HhhcCCCcEEEEcCCC
Q 021361          218 IDALGPSGILINIGRG  233 (313)
Q Consensus       218 l~~mk~ga~~in~~rg  233 (313)
                         .|+|+++||+|--
T Consensus       241 ---vk~GavVIDVGin  253 (303)
T 4b4u_A          241 ---IKQGAVVVDAGFH  253 (303)
T ss_dssp             ---SCTTCEEEECCCB
T ss_pred             ---ccCCCEEEEecee
Confidence               6999999999843

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.89  E-value=1.6e-05  Score=72.97  Aligned_cols=104  Identities=20%  Similarity=0.259  Sum_probs=73.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---cc---------------ccccCCHHHHHhhCCeeEEecCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---AN---------------YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---~~---------------~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      .+|+|||.|.||..+|..|...|.+|.+++|+....   .+               .....+++++.+.+|+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~~   82 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKVV   82 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCCC
Confidence            589999999999999999999999999999975310   01               111346666666899999999965


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      . +...+ +.....+++++++|.+.-| +-.++.+.+.+...++.
T Consensus        83 ~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           83 E-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             T-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             C-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            3 33322 3344567888999988766 33346777777655554

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.87  E-value=4e-05  Score=70.63  Aligned_cols=83  Identities=13%  Similarity=0.222  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHh-cC-CcEEEECCCCcccc-----------cccccCCHHHHHhhCCeeEEecCCChHh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEA-FG-CPISYHSRSEKSDA-----------NYKYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~-----------~~~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      ..++++|||.|.+|+.+++.|.. .+ .+|.+|||+.++..           ... +.++++++ ++|+|++++|..   
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~---  198 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR---  198 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS---
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC---
Confidence            35799999999999999999876 44 46899999875421           123 57899999 999999999964   


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCC
Q 021361          210 HHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      ..++..   +.+++|..++++|.-
T Consensus       199 ~pv~~~---~~l~~G~~V~~ig~~  219 (322)
T 1omo_A          199 KPVVKA---EWVEEGTHINAIGAD  219 (322)
T ss_dssp             SCCBCG---GGCCTTCEEEECSCC
T ss_pred             CceecH---HHcCCCeEEEECCCC
Confidence            345543   458999999999643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.87  E-value=1.3e-05  Score=64.40  Aligned_cols=85  Identities=20%  Similarity=0.200  Sum_probs=59.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~~  211 (313)
                      .+|.|+|+|.+|+.+|+.|+..|++|+++|++++..     .+...    ..+.+.+    +.++|+|++++|.+..+..
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~   87 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGE   87 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHH
Confidence            469999999999999999999999999999987532     12211    1222222    4689999999997655543


Q ss_pred             ccCHHHHhhcCCCcEEEEcC
Q 021361          212 IVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~  231 (313)
                      ++  ..+..+.++..+|-..
T Consensus        88 ~~--~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           88 IV--ASARAKNPDIEIIARA  105 (140)
T ss_dssp             HH--HHHHHHCSSSEEEEEE
T ss_pred             HH--HHHHHHCCCCeEEEEE
Confidence            32  3455566666666543

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.87  E-value=3.6e-05  Score=70.36  Aligned_cols=104  Identities=14%  Similarity=0.209  Sum_probs=72.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---cc--------------ccccCCHHHHHhhCCeeEEecCCCh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---AN--------------YKYYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---~~--------------~~~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      .+|+|||.|.||..+|..|...|.+|.+++|+....   .+              .....+.++ +..+|+|++++|...
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~~   81 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTFA   81 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCCC
Confidence            479999999999999999999999999999975210   11              011235554 678999999998543


Q ss_pred             HhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceE
Q 021361          208 ETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAG  252 (313)
Q Consensus       208 ~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~g  252 (313)
                       ++..+ +.....+++++++|.+.-| +-.++.+.+.+...++.+
T Consensus        82 -~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~  123 (312)
T 3hn2_A           82 -NSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIG  123 (312)
T ss_dssp             -GGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEE
T ss_pred             -cHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEE
Confidence             33332 3344567889999998766 223566777776555543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.84  E-value=7.6e-06  Score=74.07  Aligned_cols=104  Identities=10%  Similarity=0.081  Sum_probs=71.3

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc------c---cccCCHHHHHhhCCeeEEecCCChHh
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN------Y---KYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~------~---~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      ..++|+++.|+|.|.+|+.++..|...|+ +|.+++|+.++...      .   ....+++++.+++|+|+.++|..-..
T Consensus       122 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~  201 (281)
T 3o8q_A          122 VLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDG  201 (281)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC--
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCC
Confidence            35789999999999999999999999997 89999998754211      0   01224455557899999999975332


Q ss_pred             h-hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          210 H-HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       210 ~-~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      . ..+..   +.++++.+++++.-.+ .... |++..++.
T Consensus       202 ~~~~l~~---~~l~~~~~V~DlvY~P-~~T~-ll~~A~~~  236 (281)
T 3o8q_A          202 ELPAIDP---VIFSSRSVCYDMMYGK-GYTV-FNQWARQH  236 (281)
T ss_dssp             --CSCCG---GGEEEEEEEEESCCCS-SCCH-HHHHHHHT
T ss_pred             CCCCCCH---HHhCcCCEEEEecCCC-ccCH-HHHHHHHC
Confidence            2 12333   4577889999998765 3344 44444443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.83  E-value=9e-06  Score=73.11  Aligned_cols=93  Identities=12%  Similarity=0.065  Sum_probs=58.9

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc------c--cc-cCCHHHHHh-hCCeeEEecCCChHhh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN------Y--KY-YTNIIDLAS-NCQILIVACSLTEETH  210 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~------~--~~-~~~l~~l~~-~aDvv~l~~p~~~~t~  210 (313)
                      .++|+++.|+|.|.+|++++..|...|.+|++++|+.++...      .  .. ..+++++.+ ++|+|+.++|......
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~~  195 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGG  195 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-----
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCCC
Confidence            477899999999999999999999999999999998643211      0  00 122333333 7899999998643211


Q ss_pred             h-ccCHHHHhhcCCCcEEEEcCCCCcc
Q 021361          211 H-IVNRKVIDALGPSGILINIGRGAHI  236 (313)
Q Consensus       211 ~-~i~~~~l~~mk~ga~~in~~rg~~v  236 (313)
                      - -+..+.   ++++.+++|+.-.+..
T Consensus       196 ~~~i~~~~---l~~~~~v~D~~y~p~~  219 (272)
T 1p77_A          196 TASVDAEI---LKLGSAFYDMQYAKGT  219 (272)
T ss_dssp             --CCCHHH---HHHCSCEEESCCCTTS
T ss_pred             CCCCCHHH---cCCCCEEEEeeCCCCc
Confidence            0 122222   3456666666654433

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.81  E-value=2.6e-05  Score=70.22  Aligned_cols=105  Identities=16%  Similarity=0.134  Sum_probs=69.3

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc----c----cccCCHHHHH-hhCCeeEEecCCChHh
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN----Y----KYYTNIIDLA-SNCQILIVACSLTEET  209 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~----~----~~~~~l~~l~-~~aDvv~l~~p~~~~t  209 (313)
                      ..++||++.|+|.|.+|+.++..|...|. +|++++|+.++...    .    ....+++++- .++|+|+.++|..-..
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~  195 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTA  195 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGT
T ss_pred             CCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCC
Confidence            35789999999999999999999999997 89999998754211    0    0112333332 6899999999864221


Q ss_pred             h-hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          210 H-HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       210 ~-~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      . ..+..   +.++++.+++++.-.+ ....-+.+|-+.|
T Consensus       196 ~~~~i~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  231 (272)
T 3pwz_A          196 DLPPLPA---DVLGEAALAYELAYGK-GLTPFLRLAREQG  231 (272)
T ss_dssp             CCCCCCG---GGGTTCSEEEESSCSC-CSCHHHHHHHHHS
T ss_pred             CCCCCCH---HHhCcCCEEEEeecCC-CCCHHHHHHHHCC
Confidence            1 12333   3467888888887664 3334333443444

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.81  E-value=3.8e-05  Score=60.78  Aligned_cols=85  Identities=20%  Similarity=0.266  Sum_probs=57.5

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccc----cCCHHHH----HhhCCeeEEecCCChHh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKY----YTNIIDL----ASNCQILIVACSLTEET  209 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t  209 (313)
                      +.+|+|+|+|.+|+.+++.|...|++|.+++++++..      .+...    ..+.+.+    +.++|+|++++|....+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            4689999999999999999999999999999876431      12211    1233332    56799999999864333


Q ss_pred             hhccCHHHHhhcCCCcEEEEc
Q 021361          210 HHIVNRKVIDALGPSGILINI  230 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~  230 (313)
                      .  .-......++++.+++-+
T Consensus        84 ~--~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 L--MSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             H--HHHHHHHHTTCCCEEEEC
T ss_pred             H--HHHHHHHHcCCCEEEEEe
Confidence            2  222345557777666544

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.80  E-value=2.8e-05  Score=69.83  Aligned_cols=91  Identities=11%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc------cc--c-ccCCHHHHH-hhCCeeEEecCCChHhh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA------NY--K-YYTNIIDLA-SNCQILIVACSLTEETH  210 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~~--~-~~~~l~~l~-~~aDvv~l~~p~~~~t~  210 (313)
                      .+.|+++.|+|.|.+|+.+++.|...|.+|++++|+.++..      +.  . ...+.+++. .++|+|+.++|......
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~~  195 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGD  195 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCCC
Confidence            46789999999999999999999999999999999864321      10  0 012233333 58999999998643310


Q ss_pred             -hccCHHHHhhcCCCcEEEEcCCCC
Q 021361          211 -HIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       211 -~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                       .-+..   +.++++.+++|+....
T Consensus       196 ~~~i~~---~~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          196 IPAIPS---SLIHPGIYCYDMFYQK  217 (271)
T ss_dssp             CCCCCG---GGCCTTCEEEESCCCS
T ss_pred             CCCCCH---HHcCCCCEEEEeccCC
Confidence             01232   2357788888887764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.79  E-value=5.5e-05  Score=60.02  Aligned_cols=92  Identities=18%  Similarity=0.244  Sum_probs=58.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCCh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTE  207 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~  207 (313)
                      .+.+++|.|+|+|.+|+.+++.|...|++|.+++++.+..     .+...    ..+.+.+    +.++|+|+.+++...
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~   82 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANI   82 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCH
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCch
Confidence            3567889999999999999999999999999999875421     11111    1233322    567999999998652


Q ss_pred             HhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          208 ETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       208 ~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      +.. ..-......+.+. .+|....+.
T Consensus        83 ~~~-~~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           83 QAS-TLTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             HHH-HHHHHHHHHTTCS-EEEEECCSH
T ss_pred             HHH-HHHHHHHHHcCCC-eEEEEeCCH
Confidence            222 1222344556665 455444443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.79  E-value=1.8e-05  Score=60.70  Aligned_cols=63  Identities=16%  Similarity=0.205  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCcccc-----cccc-------cCCHHHHHhhCCeeEEecCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSDA-----NYKY-------YTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~-----~~~~-------~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .+++|+|+|.|.||+.+++.|...| ++|.+++|++....     +...       ..++.++++++|+|+.++|.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~   79 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPF   79 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCG
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCc
Confidence            4679999999999999999999999 89999999764321     1111       12455677889999998874

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.76  E-value=0.00012  Score=66.33  Aligned_cols=104  Identities=16%  Similarity=0.128  Sum_probs=72.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-------------ccc--cCCHHHHHhhCCeeEEecC
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-------------YKY--YTNIIDLASNCQILIVACS  204 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-------------~~~--~~~l~~l~~~aDvv~l~~p  204 (313)
                      .++|+++.|+|.|.+|+.++..|...|. +|.+++|+.++...             ...  ..++++.++++|+|+.++|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence            4789999999999999999999999999 59999998754211             111  2378888999999999999


Q ss_pred             CChHhh--hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          205 LTEETH--HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       205 ~~~~t~--~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      ..-...  -.+.   .+.++++.+++++.-.+. ...-|.+|-+.|
T Consensus       204 ~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P~-~T~ll~~A~~~G  245 (283)
T 3jyo_A          204 MGMPAHPGTAFD---VSCLTKDHWVGDVVYMPI-ETELLKAARALG  245 (283)
T ss_dssp             TTSTTSCSCSSC---GGGCCTTCEEEECCCSSS-SCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCC---HHHhCCCCEEEEecCCCC-CCHHHHHHHHCc
Confidence            632111  1233   244678888888876542 333344444444

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.76  E-value=2.5e-05  Score=71.74  Aligned_cols=100  Identities=15%  Similarity=0.177  Sum_probs=66.9

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-----------------ccccCCHHHHHhhCCeeEEecCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-----------------YKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-----------------~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .++|+|||.|.||..+|..|...|+ +|..||+..+...+                 .....++ +.+++||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999998898 99999998753211                 1112456 678899999999942


Q ss_pred             Ch-----------Hhhh---ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHH
Q 021361          206 TE-----------ETHH---IVNRKVIDALGPSGILINIGRGAHIDEPELVSAL  245 (313)
Q Consensus       206 ~~-----------~t~~---~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al  245 (313)
                      ..           .+..   -+-+ .++...|++++++++-..-+....+.+..
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~-~i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAE-GVKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHH-HHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHH-HHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            11           1111   1112 22334579999999875544445555543

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.76  E-value=4.6e-05  Score=71.98  Aligned_cols=88  Identities=18%  Similarity=0.184  Sum_probs=65.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--------cEEEECCCCccc------------------cc------ccccCCHHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--------PISYHSRSEKSD------------------AN------YKYYTNIIDL  192 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--------~V~~~~~~~~~~------------------~~------~~~~~~l~~l  192 (313)
                      .||+|||.|.+|.++|..|...|.        +|..|.|.++..                  .+      .....++++.
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a  114 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS  114 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence            389999999999999999986553        488888764310                  01      1234689999


Q ss_pred             HhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCC
Q 021361          193 ASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       193 ~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      ++.||+|++++|. ...+.++ ++....++++..+|+++.|=
T Consensus       115 l~~ad~ii~avPs-~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          115 VKDVDIIVFNIPH-QFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             HTTCSEEEECSCG-GGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             HhcCCEEEEECCh-hhhHHHH-HHhccccCCCceeEEecccc
Confidence            9999999999995 3334333 33455678899999999884

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.75  E-value=6.6e-05  Score=68.95  Aligned_cols=107  Identities=19%  Similarity=0.183  Sum_probs=70.2

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC---Ccccc----------c--cc--ccCC---HHHHHhhCCe
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS---EKSDA----------N--YK--YYTN---IIDLASNCQI  198 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~---~~~~~----------~--~~--~~~~---l~~l~~~aDv  198 (313)
                      ..++||++.|+|.|.+|++++..|...|+ +|++++|+   .++..          +  ..  ...+   +.+.++++|+
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi  229 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI  229 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence            35889999999999999999999999999 79999998   32210          0  11  1122   4566789999


Q ss_pred             eEEecCCC--hHhh-hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          199 LIVACSLT--EETH-HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       199 v~l~~p~~--~~t~-~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                      |+.++|..  +... ..+.  ..+.++++.+++++.-.+. . ..|+++.++..+
T Consensus       230 IINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P~-~-T~ll~~A~~~G~  280 (315)
T 3tnl_A          230 FTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKPT-K-TRLLEIAEEQGC  280 (315)
T ss_dssp             EEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSSS-S-CHHHHHHHHTTC
T ss_pred             EEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCCC-C-CHHHHHHHHCCC
Confidence            99999863  1111 1121  2244678888888876553 3 344444444333

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.71  E-value=2.9e-05  Score=62.11  Aligned_cols=85  Identities=11%  Similarity=0.100  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCChHh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTEET  209 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t  209 (313)
                      .++++.|+|+|.+|+.+++.|...|++|.++|++++..     .+...    ..+.+.+    +.++|+|++++|..+. 
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~-   83 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF-   83 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHH-
Confidence            45789999999999999999999999999999976532     12111    1233322    3578999999984322 


Q ss_pred             hhccCHHHHhhcCCCcEEEE
Q 021361          210 HHIVNRKVIDALGPSGILIN  229 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in  229 (313)
                       ++.-....+.+....+++-
T Consensus        84 -n~~~~~~a~~~~~~~iia~  102 (141)
T 3llv_A           84 -NLKILKALRSVSDVYAIVR  102 (141)
T ss_dssp             -HHHHHHHHHHHCCCCEEEE
T ss_pred             -HHHHHHHHHHhCCceEEEE
Confidence             2333344455553344443

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.70  E-value=3.1e-05  Score=73.23  Aligned_cols=84  Identities=8%  Similarity=0.093  Sum_probs=61.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHh-cCCcEEEEC---CCCcc------cc----------c--c-------cccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEA-FGCPISYHS---RSEKS------DA----------N--Y-------KYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~-~g~~V~~~~---~~~~~------~~----------~--~-------~~~~~l~~l~~~  195 (313)
                      .+|+|||.|.||..+|..|.. .|++|.+|+   |+++.      ..          +  .       ....++++.++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            379999999999999999987 599999999   64321      00          1  0       123578888999


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEc
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINI  230 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~  230 (313)
                      +|+|++++|... .+.++ ++....++++++++..
T Consensus        83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999643 33333 3344567889999884

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.67  E-value=0.00017  Score=69.06  Aligned_cols=106  Identities=16%  Similarity=0.214  Sum_probs=78.2

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCC---cEEEEC----CC----Cc-c---cccc-----c------ccCCHHHH
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGC---PISYHS----RS----EK-S---DANY-----K------YYTNIIDL  192 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~---~V~~~~----~~----~~-~---~~~~-----~------~~~~l~~l  192 (313)
                      +..++++++.|+|.|..|+.+++.|...|.   +|+++|    |+    .. .   ....     .      ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            456889999999999999999999999998   799999    76    21 1   1100     0      13468899


Q ss_pred             HhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          193 ASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       193 ~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                      ++++|+++.+.|..+   +++..+.++.|+++.++++++.  +..+.-+.+|.+.|.
T Consensus       261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLyn--P~~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLAN--PVPEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCS--SSCSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCC--CCCcchHHHHHHcCC
Confidence            999999999988632   4555567788999999999943  334555555555564

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.66  E-value=4.3e-05  Score=69.08  Aligned_cols=104  Identities=9%  Similarity=0.136  Sum_probs=70.2

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc----c--cccCCHHHHHhhCCeeEEecCCC--hHhh-
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN----Y--KYYTNIIDLASNCQILIVACSLT--EETH-  210 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~----~--~~~~~l~~l~~~aDvv~l~~p~~--~~t~-  210 (313)
                      .++|+++.|+|.|.+|++++..|...|+ +|++++|+.++...    .  ..+.++++ + ++|+|+.++|.-  +... 
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~  196 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGE  196 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTC
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCcc
Confidence            4789999999999999999999999999 79999998754311    1  11122333 4 899999999862  2211 


Q ss_pred             hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          211 HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      -.+..+   .++++.+++++.-.+. . ..|+++.++..+.
T Consensus       197 ~pi~~~---~l~~~~~v~DlvY~P~-~-T~ll~~A~~~G~~  232 (282)
T 3fbt_A          197 SPVDKE---VVAKFSSAVDLIYNPV-E-TLFLKYARESGVK  232 (282)
T ss_dssp             CSSCHH---HHTTCSEEEESCCSSS-S-CHHHHHHHHTTCE
T ss_pred             CCCCHH---HcCCCCEEEEEeeCCC-C-CHHHHHHHHCcCe
Confidence            124443   3578899999876543 2 4455544444443

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.63  E-value=0.00025  Score=64.71  Aligned_cols=102  Identities=19%  Similarity=0.238  Sum_probs=69.3

Q ss_pred             CEEEEEcCChhHHH-HHHHHHh-cCCcEE-EECCCCcccc------cccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          145 KSVGIVGLGRIGTA-IAKRVEA-FGCPIS-YHSRSEKSDA------NYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       145 ~~vgiiG~G~iG~~-~a~~l~~-~g~~V~-~~~~~~~~~~------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      .+|||||+|.||+. +++.+.. -++++. ++|++++...      +...+.+.+++..++|+|++++|........   
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~---   82 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVV---   82 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHH---
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHH---
Confidence            48999999999997 8888875 467765 8898875421      2334677888867899999999965443322   


Q ss_pred             HHHhhcCCCc-EEEE-cCCCCccCHHHHHHHHHhCCce
Q 021361          216 KVIDALGPSG-ILIN-IGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       216 ~~l~~mk~ga-~~in-~~rg~~vd~~al~~al~~g~~~  251 (313)
                        ...++.|. +++. ..-..+-+.+.|.++.++.++.
T Consensus        83 --~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           83 --STLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             --HHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence              23355565 5554 2233445566788888776654

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.60  E-value=0.00019  Score=65.89  Aligned_cols=101  Identities=12%  Similarity=0.121  Sum_probs=66.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCCccc------ccccccCCHHHHHh--hCCeeEEecCCChHhhhccC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSEKSD------ANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~------~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~  214 (313)
                      .+|||||+|.||+..++.+... ++++. ++|++++..      .+.. +.+++++++  +.|+|++++|...+....  
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--   80 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLI--   80 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHH--
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHH--
Confidence            4899999999999999999875 77865 689876532      2344 789999998  899999999875543322  


Q ss_pred             HHHHhhcCCCc-EEEE-cCCCCccCHHHHHHHHHhCCce
Q 021361          215 RKVIDALGPSG-ILIN-IGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       215 ~~~l~~mk~ga-~~in-~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .   ..++.|. +++. ..--.+-+.+.|.++.++.++.
T Consensus        81 ~---~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (331)
T 4hkt_A           81 E---RFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAK  116 (331)
T ss_dssp             H---HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             H---HHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCe
Confidence            1   2233343 3332 1122334445566666555443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.59  E-value=0.00019  Score=66.33  Aligned_cols=88  Identities=13%  Similarity=0.138  Sum_probs=61.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-----------------ccccCCHHHHHhhCCeeEEec--C
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-----------------YKYYTNIIDLASNCQILIVAC--S  204 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-----------------~~~~~~l~~l~~~aDvv~l~~--p  204 (313)
                      .+|+|||.|.+|..+|..|...|+ +|..||+..+...+                 .....++++.+++||+|++++  |
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~p   89 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLT   89 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCCC
Confidence            589999999999999999998887 89999998743211                 111367888899999999998  6


Q ss_pred             CChHh------hhc--------cC--HHHHhhcCCCcEEEEcCC
Q 021361          205 LTEET------HHI--------VN--RKVIDALGPSGILINIGR  232 (313)
Q Consensus       205 ~~~~t------~~~--------i~--~~~l~~mk~ga~~in~~r  232 (313)
                      ..+..      +..        +.  .+.+....|++++++++-
T Consensus        90 ~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  133 (331)
T 1pzg_A           90 KVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  133 (331)
T ss_dssp             SCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            54321      110        10  112333458999998743

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.58  E-value=0.00011  Score=66.64  Aligned_cols=103  Identities=15%  Similarity=0.156  Sum_probs=69.9

Q ss_pred             CCEEEEEcCChhHHH-HHHHHHh-cCCcEE-EECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          144 GKSVGIVGLGRIGTA-IAKRVEA-FGCPIS-YHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       144 g~~vgiiG~G~iG~~-~a~~l~~-~g~~V~-~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      -.+|||||+|.||+. .++.++. -++++. ++|++++..      .+...+.++++++++.|+|++++|...+....  
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~--   83 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII--   83 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH--
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH--
Confidence            368999999999996 8888876 467776 789887542      23334789999999999999999965443322  


Q ss_pred             HHHHhhcCCCc-EEEE-cCCCCccCHHHHHHHHHhCCce
Q 021361          215 RKVIDALGPSG-ILIN-IGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       215 ~~~l~~mk~ga-~~in-~~rg~~vd~~al~~al~~g~~~  251 (313)
                         ...++.|. +++. ..--.+-+.+.|.++.++.++.
T Consensus        84 ---~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~  119 (308)
T 3uuw_A           84 ---KILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLN  119 (308)
T ss_dssp             ---HHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             ---HHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence               22344444 4443 2334445566677777765544

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.58  E-value=0.00027  Score=64.72  Aligned_cols=92  Identities=15%  Similarity=0.215  Sum_probs=63.6

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCc---ccc----------cc--c--ccCCH---HHHHhhCCe
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEK---SDA----------NY--K--YYTNI---IDLASNCQI  198 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~---~~~----------~~--~--~~~~l---~~l~~~aDv  198 (313)
                      ..++|+++.|+|.|.+|++++..|...|. +|++++|+.+   +..          +.  .  ...++   .+.++++|+
T Consensus       144 ~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~Di  223 (312)
T 3t4e_A          144 FDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADI  223 (312)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceE
Confidence            35789999999999999999999999999 7999999832   211          00  1  12233   566889999


Q ss_pred             eEEecCCCh--Hhhhcc--CHHHHhhcCCCcEEEEcCCCC
Q 021361          199 LIVACSLTE--ETHHIV--NRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       199 v~l~~p~~~--~t~~~i--~~~~l~~mk~ga~~in~~rg~  234 (313)
                      |+.++|..-  .....+  +.   +.++++.+++++--.+
T Consensus       224 IINaTp~Gm~~~~~~~~~~~~---~~l~~~~~v~D~vY~P  260 (312)
T 3t4e_A          224 LTNGTKVGMKPLENESLIGDV---SLLRPELLVTECVYNP  260 (312)
T ss_dssp             EEECSSTTSTTSTTCCSCCCG---GGSCTTCEEEECCCSS
T ss_pred             EEECCcCCCCCCCCCcccCCH---HHcCCCCEEEEeccCC
Confidence            999998632  111111  22   3467778888876554

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.57  E-value=2.4e-05  Score=70.88  Aligned_cols=89  Identities=17%  Similarity=0.191  Sum_probs=63.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccc---cccCCHHHHH-hhCCeeEEecCCChHhhhccCH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANY---KYYTNIIDLA-SNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~---~~~~~l~~l~-~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      .+|+|||.|.||..+|..|...|.+|.+++|+.+..     .+.   ....+..+.+ ..+|+|++++|.. .+...+. 
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l~-   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVIP-   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHGG-
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHHH-
Confidence            479999999999999999999999999999986421     111   1112333433 7899999999864 4444443 


Q ss_pred             HHHhhcCCCcEEEEcCCCCc
Q 021361          216 KVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~  235 (313)
                      +....+++++++|.+.-|=-
T Consensus        81 ~l~~~l~~~~~iv~~~nGi~  100 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGYG  100 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSCC
T ss_pred             HHHHhhCCCCEEEEeccCcc
Confidence            34455778889998877743

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.54  E-value=0.00021  Score=67.15  Aligned_cols=143  Identities=13%  Similarity=0.184  Sum_probs=98.5

Q ss_pred             CCceEEEEcCCCCCc-CC-hhhhhcC-CcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCccccccc
Q 021361           66 PTLEIVASYSVGLDK-ID-LDKCKDK-AVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKF  142 (313)
Q Consensus        66 ~~Lk~i~~~~~G~d~-id-~~~~~~~-gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l  142 (313)
                      |..-.|++--.+-.+ +. ++..+++ .|++.|. +..  -+|=-+++-+++..|                   -.|+.+
T Consensus       129 p~F~~I~lED~~~p~~f~il~~~r~~~~ipvf~D-Diq--GTa~V~lAall~al~-------------------l~g~~l  186 (398)
T 2a9f_A          129 PTFGGINLEDISAPRCFEIEQRLIKECHIPVFHD-DQH--GTAIVVLAAIFNSLK-------------------LLKKSL  186 (398)
T ss_dssp             GGCSEEEECSCCTTHHHHHHHHHHHHCSSCEEEH-HHH--HHHHHHHHHHHHHHH-------------------TTTCCT
T ss_pred             CceeEeccccCCChHHHHHHHHhhhcCCcceecc-hhh--hHHHHHHHHHHHHHH-------------------HhCCCC
Confidence            444455554333332 11 1233333 5888883 322  355556666666555                   135678


Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC----cc---cccc-----------cccCCHHHHHhhCCeeEEec
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE----KS---DANY-----------KYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~----~~---~~~~-----------~~~~~l~~l~~~aDvv~l~~  203 (313)
                      ...+|.|+|.|..|..+|+.+..+|. +|+.+|+..    ..   ....           ....++.|+++.+|+++=..
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~S  266 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVS  266 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECC
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecC
Confidence            89999999999999999999999999 899999863    11   1110           01346999999999877652


Q ss_pred             CCChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          204 SLTEETHHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       204 p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                           .-+++.++.++.|+++++++.+|+...
T Consensus       267 -----apgl~T~EmVk~Ma~~pIIfalsNPt~  293 (398)
T 2a9f_A          267 -----APGVLKAEWISKMAARPVIFAMANPIP  293 (398)
T ss_dssp             -----STTCCCHHHHHTSCSSCEEEECCSSSC
T ss_pred             -----CCCCCCHHHHHhhCCCCEEEECCCCCc
Confidence                 258999999999999999999998653

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.53  E-value=7.8e-05  Score=68.04  Aligned_cols=102  Identities=13%  Similarity=0.195  Sum_probs=67.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcE-EEECCCCccccc----ccccCCHHHHHh--hCCeeEEecCCChHhhhccCHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPI-SYHSRSEKSDAN----YKYYTNIIDLAS--NCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~~----~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      .+|||||+|.||+.+++.+... ++++ .++|++++....    ...+.+++++++  ++|+|++++|.......     
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~-----   85 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAEI-----   85 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHHH-----
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHHH-----
Confidence            4899999999999999999876 6665 578887653211    334678999996  79999999986433221     


Q ss_pred             HHhhcCCCc-EEEE-cCCCCccCHHHHHHHHHhCCce
Q 021361          217 VIDALGPSG-ILIN-IGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       217 ~l~~mk~ga-~~in-~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ..+.++.|. +++. ..--.+-+.+.|.++.++.++.
T Consensus        86 ~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~  122 (315)
T 3c1a_A           86 TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM  122 (315)
T ss_dssp             HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence            223355664 5555 2222334456677777665443

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.53  E-value=0.00013  Score=67.75  Aligned_cols=64  Identities=14%  Similarity=0.175  Sum_probs=51.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc--CCcEE-EECCCCccc------ccccccCCHHHHHh--hCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF--GCPIS-YHSRSEKSD------ANYKYYTNIIDLAS--NCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~--g~~V~-~~~~~~~~~------~~~~~~~~l~~l~~--~aDvv~l~~p~~~~  208 (313)
                      .+|||||+|.||+..++.+...  ++++. ++|++++..      .+...+.+++++++  +.|+|++++|...+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   88 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLH   88 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHH
Confidence            5899999999999999999877  77754 789876542      23455789999997  79999999996544

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.53  E-value=0.00018  Score=66.72  Aligned_cols=66  Identities=18%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCCccc------ccccccCCHHHHH--hhCCeeEEecCCChHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSEKSD------ANYKYYTNIIDLA--SNCQILIVACSLTEETH  210 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~------~~~~~~~~l~~l~--~~aDvv~l~~p~~~~t~  210 (313)
                      .+|||||+|.||+..++.++.. ++++. ++|++++..      .+...+.++++++  .+.|+|++++|...+..
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~   81 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAE   81 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            4899999999999999999877 78854 789876532      2344578999999  56999999999765543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.53  E-value=0.00017  Score=58.48  Aligned_cols=89  Identities=6%  Similarity=0.024  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc---------cccccc----cC---CHHHH-HhhCCeeEEecCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS---------DANYKY----YT---NIIDL-ASNCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---------~~~~~~----~~---~l~~l-~~~aDvv~l~~p~  205 (313)
                      ..+++.|+|+|.+|+.+++.|...|++|.++++.+..         ..+...    ..   .+.++ +.++|.|+++++.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence            3568999999999999999999999999999986421         112111    11   23444 6789999999986


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      ...+  +.-....+.+.+...+|...++
T Consensus        82 d~~n--~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           82 DADN--AFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             HHHH--HHHHHHHHHHTSSSCEEEECSS
T ss_pred             hHHH--HHHHHHHHHHCCCCEEEEEECC
Confidence            4333  3334455556454445544333

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.51  E-value=3.2e-05  Score=69.99  Aligned_cols=105  Identities=12%  Similarity=0.128  Sum_probs=69.4

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccc--------------c-ccCCHHHHHhhCCeeEEecCC
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANY--------------K-YYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~--------------~-~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .++|+++.|+|.|.+|+++|+.|...| +|++++|+.++....              . ...++.+.+.++|+|+.++|.
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI  203 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCC
Confidence            477999999999999999999999999 999999986432110              0 011224456789999999986


Q ss_pred             ChHhh---hccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          206 TEETH---HIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       206 ~~~t~---~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                      .....   ..+.  ..+.++++.+++|+..... .. .|.+..++...
T Consensus       204 ~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p~-~t-~ll~~a~~~G~  247 (287)
T 1nvt_A          204 GMYPNIDVEPIV--KAEKLREDMVVMDLIYNPL-ET-VLLKEAKKVNA  247 (287)
T ss_dssp             TCTTCCSSCCSS--CSTTCCSSSEEEECCCSSS-SC-HHHHHHHTTTC
T ss_pred             CCCCCCCCCCCC--CHHHcCCCCEEEEeeeCCc-cC-HHHHHHHHCCC
Confidence            43211   0120  1345788999999987532 22 35555444433

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.50  E-value=0.00017  Score=66.56  Aligned_cols=66  Identities=11%  Similarity=0.155  Sum_probs=52.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCCccc------ccccccCCHHHHHh--hCCeeEEecCCChHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSEKSD------ANYKYYTNIIDLAS--NCQILIVACSLTEETH  210 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~------~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~  210 (313)
                      .+|||||+|.||+..++.+... ++++. ++|++++..      .+...+.+++++++  +.|+|++++|......
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~   80 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVD   80 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHH
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHH
Confidence            4899999999999999999876 67765 788876532      23455789999998  8999999998755433

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.48  E-value=0.00026  Score=62.84  Aligned_cols=100  Identities=19%  Similarity=0.170  Sum_probs=71.5

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcE-EEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPI-SYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDAL  221 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V-~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~m  221 (313)
                      +..+|+++|+|+||+.+++.  . ++++ .+|+ ......+...+.+++++++++|+|+=|.+. +    -+.+.....|
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~gelgv~a~~d~d~lla~pD~VVe~A~~-~----av~e~~~~iL   81 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RISKDIPGVVRLDEFQVPSDVSTVVECASP-E----AVKEYSLQIL   81 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSCCCCSSSEECSSCCCCTTCCEEEECSCH-H----HHHHHHHHHT
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-ccccccCceeeCCHHHHhhCCCEEEECCCH-H----HHHHHHHHHH
Confidence            45689999999999999998  4 8886 5666 111112444467899998899999887742 2    2333355668


Q ss_pred             CCCcEEEEcCCCCccCH---HHHHHHHHhCCce
Q 021361          222 GPSGILINIGRGAHIDE---PELVSALLEGRLA  251 (313)
Q Consensus       222 k~ga~~in~~rg~~vd~---~al~~al~~g~~~  251 (313)
                      +.|.-+|-++-|.+.|.   +.|.++.++|+-.
T Consensus        82 ~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~  114 (253)
T 1j5p_A           82 KNPVNYIIISTSAFADEVFRERFFSELKNSPAR  114 (253)
T ss_dssp             TSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred             HCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence            89999999999988887   4566666666543

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.46  E-value=0.00021  Score=65.67  Aligned_cols=65  Identities=12%  Similarity=0.119  Sum_probs=51.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCCccc------ccc-cccCCHHHHHh--hCCeeEEecCCChHh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSEKSD------ANY-KYYTNIIDLAS--NCQILIVACSLTEET  209 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~------~~~-~~~~~l~~l~~--~aDvv~l~~p~~~~t  209 (313)
                      .+|||||+|.||+.+++.++.. ++++. ++|++.+..      .+. ..+.+++++++  ++|+|++++|.....
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~   81 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHY   81 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHH
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHH
Confidence            5899999999999999999875 67765 678876542      123 35689999998  799999999975543

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.45  E-value=0.00045  Score=63.37  Aligned_cols=64  Identities=17%  Similarity=0.279  Sum_probs=49.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcE-EEECCCCcccc------cc-cccCCHHHHHh--hCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPI-SYHSRSEKSDA------NY-KYYTNIIDLAS--NCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~------~~-~~~~~l~~l~~--~aDvv~l~~p~~~~  208 (313)
                      .+|||||+|.||+.+++.++.. ++++ .++|++++...      +. ..+.+++++++  +.|+|++++|....
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   80 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDH   80 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGH
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence            5899999999999999998865 4565 46788775432      22 24689999998  79999999996544

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.44  E-value=0.00025  Score=64.96  Aligned_cols=101  Identities=18%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             EEEEEcCChhHHHH-HHHHHhcCCcEE-EECCCCccc------ccc-cccCCHHHHHh--hCCeeEEecCCChHhhhccC
Q 021361          146 SVGIVGLGRIGTAI-AKRVEAFGCPIS-YHSRSEKSD------ANY-KYYTNIIDLAS--NCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       146 ~vgiiG~G~iG~~~-a~~l~~~g~~V~-~~~~~~~~~------~~~-~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~  214 (313)
                      +|||||+|.||+.+ ++.+...++++. ++|++++..      .+. ..+.+++++++  ++|+|++++|.......   
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~---   78 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQ---   78 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHH---
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHH---
Confidence            79999999999998 877766778865 788876532      123 24678999997  49999999985433221   


Q ss_pred             HHHHhhcCCCc-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 021361          215 RKVIDALGPSG-ILINI-GRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       215 ~~~l~~mk~ga-~~in~-~rg~~vd~~al~~al~~g~~~  251 (313)
                        ....++.|. +++.- .-..+-+.+.|.++.++.++.
T Consensus        79 --~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~  115 (332)
T 2glx_A           79 --TLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVV  115 (332)
T ss_dssp             --HHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred             --HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCE
Confidence              223355565 44431 122333445566666655444

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.42  E-value=0.00013  Score=66.56  Aligned_cols=62  Identities=19%  Similarity=0.337  Sum_probs=47.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC--CcEEEECCCCcccc------c---------ccc-cCCHHHHHhhCCeeEEecCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG--CPISYHSRSEKSDA------N---------YKY-YTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~------~---------~~~-~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ++|+|||.|.||..+|..|...|  .+|..+|++.+...      .         ... ..++ +.+++||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            48999999999999999999888  68999999764211      0         111 2456 6788999999999864


Q ss_pred             h
Q 021361          207 E  207 (313)
Q Consensus       207 ~  207 (313)
                      .
T Consensus        81 ~   81 (309)
T 1hyh_A           81 K   81 (309)
T ss_dssp             G
T ss_pred             c
Confidence            3

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.41  E-value=0.00027  Score=64.83  Aligned_cols=101  Identities=13%  Similarity=0.145  Sum_probs=66.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcE-EEECCCCcccc--cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPI-SYHSRSEKSDA--NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~--~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      .+|||||+|+||+.+++.+... ++++ .++|++.....  +...+.++++++.++|+|++++|......     .....
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~~gv~~~~d~~~ll~~~DvViiatp~~~h~~-----~~~~a   78 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIP-----EQAPK   78 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHH-----HHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhcCCCceeCCHHHHhcCCCEEEEcCCcHHHHH-----HHHHH
Confidence            3799999999999999999876 5675 57787754321  22334677887788999999998654322     23345


Q ss_pred             cCCCcEEEEcCCCCc--cCH-HHHHHHHHhCCc
Q 021361          221 LGPSGILINIGRGAH--IDE-PELVSALLEGRL  250 (313)
Q Consensus       221 mk~ga~~in~~rg~~--vd~-~al~~al~~g~~  250 (313)
                      ++.|.-++...-..+  -+. +.|.++.+++..
T Consensus        79 l~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~  111 (320)
T 1f06_A           79 FAQFACTVDTYDNHRDIPRHRQVMNEAATAAGN  111 (320)
T ss_dssp             HTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCC
Confidence            666776665444332  222 456666665543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.37  E-value=0.00026  Score=65.71  Aligned_cols=68  Identities=15%  Similarity=0.057  Sum_probs=51.4

Q ss_pred             cCCCEEEEEcCChhHH-HHHHHHHhc-CCcEE-EECCCCccc------ccccccCCHHHHHh--hCCeeEEecCCChHh
Q 021361          142 FSGKSVGIVGLGRIGT-AIAKRVEAF-GCPIS-YHSRSEKSD------ANYKYYTNIIDLAS--NCQILIVACSLTEET  209 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~-~~a~~l~~~-g~~V~-~~~~~~~~~------~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t  209 (313)
                      .+-.+|||||+|.||+ .+++.++.. +++|. ++|++.+..      .+...+.+++++++  +.|+|++++|.....
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~  103 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHA  103 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHH
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHH
Confidence            3446899999999998 789988877 77865 778876532      13444579999997  589999999865443

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.37  E-value=0.00031  Score=55.41  Aligned_cols=99  Identities=17%  Similarity=0.212  Sum_probs=73.8

Q ss_pred             CEEEEEcC----ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          145 KSVGIVGL----GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       145 ~~vgiiG~----G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      ++|+|||.    |..|..+.+.|+..|++|+-+++..+...+...+.++.++-. -|++++++|. +.+..++.+ .. .
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v~e-~~-~   80 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINP-QNQLSEYNY-IL-S   80 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCH-HHHGGGHHH-HH-H
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCH-HHHHHHHHH-HH-h
Confidence            68999998    468999999999999999999998777777777788888888 9999999984 444555543 22 2


Q ss_pred             cCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          221 LGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       221 mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +...+++++.|  -  .++++.+.+++..+.
T Consensus        81 ~g~k~v~~~~G--~--~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           81 LKPKRVIFNPG--T--ENEELEEILSENGIE  107 (122)
T ss_dssp             HCCSEEEECTT--C--CCHHHHHHHHHTTCE
T ss_pred             cCCCEEEECCC--C--ChHHHHHHHHHcCCe
Confidence            34446666543  2  346777777776665

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.37  E-value=0.00036  Score=64.34  Aligned_cols=87  Identities=20%  Similarity=0.276  Sum_probs=59.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-----------------ccccCCHHHHHhhCCeeEEec--C
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-----------------YKYYTNIIDLASNCQILIVAC--S  204 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-----------------~~~~~~l~~l~~~aDvv~l~~--p  204 (313)
                      ++|+|||.|.+|..+|..+...|+ +|..||+..+...+                 .....++ +.+++||+|++++  |
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p   93 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP   93 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            689999999999999999998898 89999998753211                 1112566 6789999999998  4


Q ss_pred             CChH---------hhhccC--HHHHhhcCCCcEEEEcCC
Q 021361          205 LTEE---------THHIVN--RKVIDALGPSGILINIGR  232 (313)
Q Consensus       205 ~~~~---------t~~~i~--~~~l~~mk~ga~~in~~r  232 (313)
                      ..+.         +..++.  .+.+....|++++++++-
T Consensus        94 ~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           94 RKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN  132 (328)
T ss_dssp             CCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            3221         111111  112233358899988743

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.36  E-value=0.0003  Score=62.13  Aligned_cols=81  Identities=19%  Similarity=0.270  Sum_probs=56.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEE-EECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGP  223 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~  223 (313)
                      .+|+|+|+|.||+.+++.+...+.++. ++|+......++..+.++++++ ++|+++-.++ ...+.     +.+. ++.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~-p~a~~-----~~~~-l~~   75 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSN-PNLLF-----PLLD-EDF   75 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSC-HHHHH-----HHHT-SCC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCC-hHHHH-----HHHH-Hhc
Confidence            479999999999999999987755754 5888776555666677888888 9999884442 11222     2333 677


Q ss_pred             CcEEEEcCCC
Q 021361          224 SGILINIGRG  233 (313)
Q Consensus       224 ga~~in~~rg  233 (313)
                      |.-+|....|
T Consensus        76 g~~vVigTTG   85 (243)
T 3qy9_A           76 HLPLVVATTG   85 (243)
T ss_dssp             CCCEEECCCS
T ss_pred             CCceEeCCCC
Confidence            7666655555

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.35  E-value=0.00039  Score=63.96  Aligned_cols=102  Identities=16%  Similarity=0.187  Sum_probs=66.7

Q ss_pred             CEEEEEcCChhHHHHHHHHH-h-cCCcE-EEECCCCccc------ccc-cccCCHHHHHh--hCCeeEEecCCChHhhhc
Q 021361          145 KSVGIVGLGRIGTAIAKRVE-A-FGCPI-SYHSRSEKSD------ANY-KYYTNIIDLAS--NCQILIVACSLTEETHHI  212 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~-~-~g~~V-~~~~~~~~~~------~~~-~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~  212 (313)
                      .+|||||+|.||+..++.++ . -|+++ .++|+++...      .+. ..+.+++++++  ++|+|++++|....... 
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~-   87 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEM-   87 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHH-
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHH-
Confidence            48999999999999999988 5 47775 5788876532      133 34678999997  69999999986443321 


Q ss_pred             cCHHHHhhcCCCc-EEEEc-CCCCccCHHHHHHHHHhC-Cce
Q 021361          213 VNRKVIDALGPSG-ILINI-GRGAHIDEPELVSALLEG-RLA  251 (313)
Q Consensus       213 i~~~~l~~mk~ga-~~in~-~rg~~vd~~al~~al~~g-~~~  251 (313)
                          ..+.++.|. +++.- .-..+-+.+.|.++.++. ++.
T Consensus        88 ----~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           88 ----TIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ----HHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             ----HHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence                223455665 34421 112223344577777776 554

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.34  E-value=0.00019  Score=65.85  Aligned_cols=62  Identities=23%  Similarity=0.335  Sum_probs=47.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------ccc-cCCHHHHHhhCCeeEEecCCCh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKY-YTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~-~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      .+|+|||.|.||..+|..|...|.  +|..+|+..+...+              ... ..+ .+.+++||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            379999999999999999998888  89999997642111              011 134 346789999999998643

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.31  E-value=0.00066  Score=63.25  Aligned_cols=102  Identities=14%  Similarity=0.162  Sum_probs=65.0

Q ss_pred             CEEEEEcCChhHHH-HHHHHHhc-CCcEE-EECCCCccc----ccccccCCHHHHHh--hCCeeEEecCCChHhhhccCH
Q 021361          145 KSVGIVGLGRIGTA-IAKRVEAF-GCPIS-YHSRSEKSD----ANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       145 ~~vgiiG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~----~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      .+|||||+|.||+. .++.++.. +++|. ++|++++..    .+...+.+++++++  +.|+|++++|...+....   
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~---   84 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLA---   84 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHH---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHH---
Confidence            48999999999997 77777765 77864 778876532    23445789999998  799999999875443321   


Q ss_pred             HHHhhcCCCcEEEEcC--CCCccCHHHHHHHHHhCCce
Q 021361          216 KVIDALGPSGILINIG--RGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~--rg~~vd~~al~~al~~g~~~  251 (313)
                        ...++.|.-++.--  --.+-+.++|.++.++.++.
T Consensus        85 --~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  120 (364)
T 3e82_A           85 --RLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRL  120 (364)
T ss_dssp             --HHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCe
Confidence              22334444333321  22333445566666555443

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.29  E-value=0.00073  Score=62.04  Aligned_cols=102  Identities=8%  Similarity=0.094  Sum_probs=66.4

Q ss_pred             CEEEEEcCChhHH-HHHHHHHhcCCcE-EEECCCCcccc-------cccccCCHHHHHh--hCCeeEEecCCChHhhhcc
Q 021361          145 KSVGIVGLGRIGT-AIAKRVEAFGCPI-SYHSRSEKSDA-------NYKYYTNIIDLAS--NCQILIVACSLTEETHHIV  213 (313)
Q Consensus       145 ~~vgiiG~G~iG~-~~a~~l~~~g~~V-~~~~~~~~~~~-------~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i  213 (313)
                      .+|||||+|.+|. .+++.++..|++| .++|++++...       +...+.+++++++  +.|+|++++|...+...  
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~--   82 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAEL--   82 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHH--
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHH--
Confidence            4899999999996 6778777778886 67898875431       3445789999997  69999999986544321  


Q ss_pred             CHHHHhhcCCCc-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 021361          214 NRKVIDALGPSG-ILINI-GRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       214 ~~~~l~~mk~ga-~~in~-~rg~~vd~~al~~al~~g~~~  251 (313)
                         ..+.++.|. +++.- .--.+-+.++|.++.++.++.
T Consensus        83 ---~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~  119 (336)
T 2p2s_A           83 ---ALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRK  119 (336)
T ss_dssp             ---HHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCC
T ss_pred             ---HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence               223344554 45441 122333445566666554443

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.28  E-value=0.0006  Score=62.70  Aligned_cols=58  Identities=17%  Similarity=0.201  Sum_probs=46.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc---------------c--ccccCCHHHHHhhCCeeEEec
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA---------------N--YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~---------------~--~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      ++|+|||.|.+|..+|..|...|+ +|..+|+..+...               .  .....+. +.+++||+|+++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            589999999999999999998888 8999998765321               0  1112566 6789999999998

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.26  E-value=0.0011  Score=59.99  Aligned_cols=104  Identities=15%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcE-EEECCCC--cccccccccCCHHHHHh--hCCeeEEecCCChHhhhccCHHH
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPI-SYHSRSE--KSDANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V-~~~~~~~--~~~~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      ..+|+|+|+ |.+|+..++.++..|+++ ..+++..  ....+...+.+++++..  ..|++++++|.. .....+.+ .
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~~e-a   84 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSILE-A   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHHHH-H
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHHHH-H
Confidence            468999999 999999999999889984 3667753  22345556789999998  899999999853 22323222 2


Q ss_pred             HhhcCCCcEEEEcCCCC-ccCHHHHHHHHHhCCce
Q 021361          218 IDALGPSGILINIGRGA-HIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~-~vd~~al~~al~~g~~~  251 (313)
                      ++ ..... +|..+.|- .-+.+.+.++.++..+.
T Consensus        85 ~~-~Gi~~-iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           85 ID-AGIKL-IITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             HH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22 22222 34444443 22345788888776654

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.25  E-value=0.00037  Score=64.82  Aligned_cols=64  Identities=14%  Similarity=0.187  Sum_probs=51.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCCccc-----ccccccCCHHHHHh--hCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSEKSD-----ANYKYYTNIIDLAS--NCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~-----~~~~~~~~l~~l~~--~aDvv~l~~p~~~~  208 (313)
                      .+|||||+|.||+..++.++.. ++++. ++|++++..     .+...+.+++++++  +.|+|++++|...+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSH   78 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            5899999999999999999876 67765 678876532     24455789999998  79999999997544

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.25  E-value=0.00023  Score=63.00  Aligned_cols=94  Identities=12%  Similarity=0.179  Sum_probs=63.5

Q ss_pred             HHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC-------------------ccc-
Q 021361          122 FDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE-------------------KSD-  180 (313)
Q Consensus       122 ~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~-------------------~~~-  180 (313)
                      |.++.+-..|...   ....|++++|.|||.|.+|..+|+.|...|. +|.++|+..                   .+. 
T Consensus        12 y~Rq~~l~~~g~~---~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~   88 (249)
T 1jw9_B           12 YNRQIILRGFDFD---GQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVE   88 (249)
T ss_dssp             THHHHTSTTTHHH---HHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHH
T ss_pred             hhheecccccCHH---HHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHH
Confidence            3444444456421   1246899999999999999999999999998 788888875                   110 


Q ss_pred             ----------cccc--c----c--CCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          181 ----------ANYK--Y----Y--TNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       181 ----------~~~~--~----~--~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                                ....  .    .  .+++++++++|+|+.+++ +.+++.++++...+
T Consensus        89 ~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~  144 (249)
T 1jw9_B           89 SARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFA  144 (249)
T ss_dssp             HHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHH
Confidence                      0000  0    1  134567888999998885 56777777765444

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.25  E-value=0.0024  Score=58.05  Aligned_cols=99  Identities=14%  Similarity=0.166  Sum_probs=75.5

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccccc-------ccccCCHHHHHhhCCeeEEecCC-------
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDAN-------YKYYTNIIDLASNCQILIVACSL-------  205 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-------~~~~~~l~~l~~~aDvv~l~~p~-------  205 (313)
                      .+.|++|+++|= +++.++++..+..+|++|.+..|..-....       .....++++.++++|+|..-.=.       
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~  230 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE  230 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC-------
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc
Confidence            378999999998 899999999999999999998886532221       34468999999999999883320       


Q ss_pred             -ChH----hhhccCHHHHhhcCCCcEEEEcC---CCCccCHH
Q 021361          206 -TEE----THHIVNRKVIDALGPSGILINIG---RGAHIDEP  239 (313)
Q Consensus       206 -~~~----t~~~i~~~~l~~mk~ga~~in~~---rg~~vd~~  239 (313)
                       ...    ...-++.+.++.+||+++|..+.   ||.=|+.+
T Consensus       231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e  272 (301)
T 2ef0_A          231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE  272 (301)
T ss_dssp             -CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             hhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence             010    12466899999999999999998   56555544

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.24  E-value=0.001  Score=59.73  Aligned_cols=102  Identities=12%  Similarity=0.190  Sum_probs=66.1

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc------cccccCCHHHHHhhCCeeEEecCCChHh----hh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA------NYKYYTNIIDLASNCQILIVACSLTEET----HH  211 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~------~~~~~~~l~~l~~~aDvv~l~~p~~~~t----~~  211 (313)
                      .++++.|||.|.+|+.++..|...|+ +|++++|+.++..      +.....++.  +.++|+|+.++|..-..    ..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            46799999999999999999999998 7999999865421      111111222  46799999999964321    11


Q ss_pred             -ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          212 -IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       212 -~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                       .+..+   .++++.+++|+.-.+. .. .|++..++..+.
T Consensus       196 ~~~~~~---~l~~~~~v~DlvY~P~-~T-~ll~~A~~~G~~  231 (271)
T 1npy_A          196 LAFPKA---FIDNASVAFDVVAMPV-ET-PFIRYAQARGKQ  231 (271)
T ss_dssp             CSSCHH---HHHHCSEEEECCCSSS-SC-HHHHHHHHTTCE
T ss_pred             CCCCHH---HcCCCCEEEEeecCCC-CC-HHHHHHHHCCCE
Confidence             13322   3456788888876443 33 455555544443

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.23  E-value=0.0003  Score=64.10  Aligned_cols=100  Identities=15%  Similarity=0.089  Sum_probs=60.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHh-cCCcEE-EECCCCcccc--ccc--ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEA-FGCPIS-YHSRSEKSDA--NYK--YYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~~--~~~--~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      .+|||||+|.||+.+++.++. -++++. ++|++++...  +..  .+.++.+. .++|+|++|+|...+..     ...
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~-----~~~   83 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL-ESVDVALVCSPSREVER-----TAL   83 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHH-----HHH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC-CCCCEEEECCCchhhHH-----HHH
Confidence            489999999999999999986 467876 6888765322  221  23455554 68999999998543322     122


Q ss_pred             hhcCCCcEEEEcCC--C-CccCHHHHHHHHHhCCc
Q 021361          219 DALGPSGILINIGR--G-AHIDEPELVSALLEGRL  250 (313)
Q Consensus       219 ~~mk~ga~~in~~r--g-~~vd~~al~~al~~g~~  250 (313)
                      ..++.|.-+++..-  + ...+.+.|.++.++.++
T Consensus        84 ~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~  118 (304)
T 3bio_A           84 EILKKGICTADSFDIHDGILALRRSLGDAAGKSGA  118 (304)
T ss_dssp             HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCC
Confidence            44566776666422  1 22334566676666543

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.22  E-value=0.0028  Score=57.72  Aligned_cols=91  Identities=9%  Similarity=0.083  Sum_probs=70.5

Q ss_pred             ccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCcccc--------------c--ccccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSDA--------------N--YKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .+.|++|+++|=|  ++.++++..+..+|++|.+..|..-...              +  ...+.++++.++++|+|..-
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            3789999999986  9999999999999999999887653211              1  23367899999999999883


Q ss_pred             cCC-------Ch-----HhhhccCHHHHhhcCCCcEEEEcC
Q 021361          203 CSL-------TE-----ETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       203 ~p~-------~~-----~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      .=.       .+     ....-++.+.++.+||+++|..+.
T Consensus       225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            320       00     123467899999999999999987

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.22  E-value=0.00038  Score=66.87  Aligned_cols=101  Identities=14%  Similarity=0.179  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCChh--HHHHHHHHHh----cCCcEEEECCCCccc--------------ccccccCCHHHHHhhCCeeEEe
Q 021361          143 SGKSVGIVGLGRI--GTAIAKRVEA----FGCPISYHSRSEKSD--------------ANYKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       143 ~g~~vgiiG~G~i--G~~~a~~l~~----~g~~V~~~~~~~~~~--------------~~~~~~~~l~~l~~~aDvv~l~  202 (313)
                      +..+|+|||.|++  |..+++.+..    .| +|..||+.++..              .......++++.++.||+|+++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4569999999997  5788887764    46 999999986431              0122357899999999999999


Q ss_pred             cCCC-----------hHhhhccCH------------------------HHHhhcCCCcEEEEcCCCCccCHHHHHHH
Q 021361          203 CSLT-----------EETHHIVNR------------------------KVIDALGPSGILINIGRGAHIDEPELVSA  244 (313)
Q Consensus       203 ~p~~-----------~~t~~~i~~------------------------~~l~~mk~ga~~in~~rg~~vd~~al~~a  244 (313)
                      ++.-           |...++...                        +.++...|++++||++..-=+-..++.+.
T Consensus        83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~  159 (450)
T 3fef_A           83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV  159 (450)
T ss_dssp             CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH
T ss_pred             cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH
Confidence            9642           222333211                        23444578999999976554444444443

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.21  E-value=0.00074  Score=62.75  Aligned_cols=66  Identities=23%  Similarity=0.351  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCChhHHHHHHHHH-h-cCCcEE-EECCCCccc------cc--ccccCCHHHHHh--hCCeeEEecCCChH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVE-A-FGCPIS-YHSRSEKSD------AN--YKYYTNIIDLAS--NCQILIVACSLTEE  208 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~-~-~g~~V~-~~~~~~~~~------~~--~~~~~~l~~l~~--~aDvv~l~~p~~~~  208 (313)
                      .-.+|||||+|.||+..++.+. . -++++. ++|++++..      .+  ...+.+++++++  +.|+|++++|....
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH  100 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            3468999999999999999998 4 367765 789887542      12  445789999998  48999999986544

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.20  E-value=0.00048  Score=62.97  Aligned_cols=102  Identities=11%  Similarity=0.082  Sum_probs=64.3

Q ss_pred             CEEEEEcCChhHH-HHHHHHHhc-CCcEEEECCCCccc------ccccc-cCCHHHHH-hhCCeeEEecCCChHhhhccC
Q 021361          145 KSVGIVGLGRIGT-AIAKRVEAF-GCPISYHSRSEKSD------ANYKY-YTNIIDLA-SNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       145 ~~vgiiG~G~iG~-~~a~~l~~~-g~~V~~~~~~~~~~------~~~~~-~~~l~~l~-~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      .+|||||+|.||+ .+++.+... ++++.++|++++..      .+... +.+..+++ .++|+|++++|.......   
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~---   79 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTL---   79 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHH---
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHH---
Confidence            3799999999998 489988765 67877999887532      12222 33444455 679999999985433221   


Q ss_pred             HHHHhhcCCCc-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 021361          215 RKVIDALGPSG-ILINI-GRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       215 ~~~l~~mk~ga-~~in~-~rg~~vd~~al~~al~~g~~~  251 (313)
                        ..+.++.|. +++.- .--.+-+.+.|.++.++.++.
T Consensus        80 --~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           80 --AAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             --HHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence              123345554 55552 222334455677777776654

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.20  E-value=0.00041  Score=63.41  Aligned_cols=90  Identities=19%  Similarity=0.302  Sum_probs=60.0

Q ss_pred             EEEEEcCChhHHHHHHHHHh--cCCcEEEECCCCccccc-----------------ccccCCHHHHHhhCCeeEEecCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEA--FGCPISYHSRSEKSDAN-----------------YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~--~g~~V~~~~~~~~~~~~-----------------~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +|+|||.|.+|..+|..|..  +|.+|..+|+..+...+                 .....+.++ ++.||+|++++|..
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~p   80 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGLP   80 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCCC
Confidence            79999999999999999986  57899999998643211                 111256766 89999999999753


Q ss_pred             hH---h-hhc-------cC--HHHHhhcCCCcEEEEcCCCCccCH
Q 021361          207 EE---T-HHI-------VN--RKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       207 ~~---t-~~~-------i~--~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      ..   + ..+       +.  .+.+....|++.++++  ..+++.
T Consensus        81 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~~~  123 (310)
T 1guz_A           81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV--SNPLDI  123 (310)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEC--CSSHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEE--cCchHH
Confidence            21   0 111       10  1122233578888888  444554

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.18  E-value=0.00078  Score=68.64  Aligned_cols=112  Identities=16%  Similarity=0.203  Sum_probs=80.0

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc--------------------c-------ccccCCHHHHHhhC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA--------------------N-------YKYYTNIIDLASNC  196 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------------~-------~~~~~~l~~l~~~a  196 (313)
                      =++|||||.|.||..+|..+...|++|+.+|++++...                    .       .....+.+ .+++|
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~a  394 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTV  394 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSC
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhC
Confidence            36999999999999999999999999999998764210                    0       01123343 47899


Q ss_pred             CeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361          197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE  259 (313)
Q Consensus       197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~  259 (313)
                      |+|+=++|-+-+.+.-+-++.=+.++++++|-.-..+  +....|.+.++. .-..+++=-|.
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~~-p~r~ig~HFfn  454 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFFS  454 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEECCS
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcCC-ccccccccccC
Confidence            9999999999888887777777778999987654333  566667666533 22234444443

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.18  E-value=0.00025  Score=64.67  Aligned_cols=108  Identities=16%  Similarity=0.217  Sum_probs=65.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------ccc-cCCHHHHHhhCCeeEEecCCCh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKY-YTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~-~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      .+|+|||.|.+|..+|..|...|.  +|..+|+..+...+              ... ..+ .+.+++||+|+++++...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            379999999999999999998898  89999987642110              011 123 356889999999995432


Q ss_pred             H-----------hhhccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 021361          208 E-----------THHIVN--RKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGA  253 (313)
Q Consensus       208 ~-----------t~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga  253 (313)
                      .           +..++.  .+.+....|++++++++-+.=+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1           111111  122333468999998754433333334444444455544

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.18  E-value=0.0012  Score=61.10  Aligned_cols=66  Identities=12%  Similarity=0.161  Sum_probs=50.8

Q ss_pred             CEEEEEcCChhHHH-HHHHHHhc-CCcEE-EECCCCccc----ccccccCCHHHHHhh--CCeeEEecCCChHhh
Q 021361          145 KSVGIVGLGRIGTA-IAKRVEAF-GCPIS-YHSRSEKSD----ANYKYYTNIIDLASN--CQILIVACSLTEETH  210 (313)
Q Consensus       145 ~~vgiiG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~----~~~~~~~~l~~l~~~--aDvv~l~~p~~~~t~  210 (313)
                      .+|||||+|.||+. .++.++.. +++|. ++|++++..    .+...+.++++++++  .|+|++++|...+..
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~   82 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFP   82 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            48999999999997 78888766 67764 778876532    234457899999986  999999999765533

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.17  E-value=0.00065  Score=59.19  Aligned_cols=43  Identities=26%  Similarity=0.294  Sum_probs=38.7

Q ss_pred             cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          136 FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       136 ~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|..-.|+|++|.|||.|.+|..-++.|...|++|+++++...
T Consensus        23 ~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~   65 (223)
T 3dfz_A           23 YTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVS   65 (223)
T ss_dssp             CEEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCC
T ss_pred             cccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            4556789999999999999999999999999999999998654

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.14  E-value=0.00033  Score=64.64  Aligned_cols=64  Identities=25%  Similarity=0.385  Sum_probs=50.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCCccc------ccc-cccCCHHHHHh--hCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSEKSD------ANY-KYYTNIIDLAS--NCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~------~~~-~~~~~l~~l~~--~aDvv~l~~p~~~~  208 (313)
                      .+|||||+|.||+..++.+... ++++. ++|++++..      .+. ..+.+++++++  ++|+|++++|....
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   77 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTH   77 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcch
Confidence            4799999999999999999875 67765 689876542      122 35689999998  79999999996544

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.12  E-value=0.00064  Score=63.77  Aligned_cols=61  Identities=25%  Similarity=0.445  Sum_probs=47.2

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc----cc---ccC---CHHHHHhhCCeeEE
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN----YK---YYT---NIIDLASNCQILIV  201 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~----~~---~~~---~l~~l~~~aDvv~l  201 (313)
                      -+.||+|+|+|.|.+|+.+++.++.+|++|+++|+.+.....    ..   .+.   .+.++++++|+|..
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~   81 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY   81 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence            478999999999999999999999999999999876543211    00   112   36678889998865

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.11  E-value=0.0003  Score=64.06  Aligned_cols=101  Identities=14%  Similarity=0.281  Sum_probs=62.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cccccc----------CCHHHHHhhCCeeEEecCCChHh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYY----------TNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~----------~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      .+|+|||.|.||..+|..|. .|.+|.+++|+....     .+....          ..-.+....+|+|+++++.. .+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence            58999999999999999999 899999999986421     111100          00023457899999999853 33


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ...+  +.++.+.+++ +|.+.-|= -.++.+.+.+...++.
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nGi-~~~e~l~~~~~~~~vl  118 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNGM-GHIHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSSS-HHHHHHHTCCCSCEEE
T ss_pred             HHHH--HHhhcCCCCe-EEEecCCc-cHHHHHHHhCCCCcEE
Confidence            3333  2333345566 77776553 2233444443444443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.11  E-value=0.0006  Score=58.64  Aligned_cols=82  Identities=9%  Similarity=0.017  Sum_probs=54.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccc----cCC---HHHH-HhhCCeeEEecCCChHhhh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKY----YTN---IIDL-ASNCQILIVACSLTEETHH  211 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~----~~~---l~~l-~~~aDvv~l~~p~~~~t~~  211 (313)
                      +|.|+|+|.+|+.+|+.|...|.+|.++|++++..      .+...    ..+   ++++ +.++|+|+++++....+. 
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~-   80 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL-   80 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH-
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHH-
Confidence            58999999999999999999999999999877532      12111    122   3333 568999999998654332 


Q ss_pred             ccCHHHHhhcCCCcEEEE
Q 021361          212 IVNRKVIDALGPSGILIN  229 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in  229 (313)
                       +-......+.+...+|-
T Consensus        81 -~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           81 -FIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             -HHHHHHHHTSCCCEEEE
T ss_pred             -HHHHHHHHHcCCCeEEE
Confidence             33333344334444443

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.11  E-value=0.0011  Score=61.50  Aligned_cols=102  Identities=18%  Similarity=0.161  Sum_probs=68.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcE-EEECCCCccc------cc----ccccCCHHHHHh--hCCeeEEecCCChHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPI-SYHSRSEKSD------AN----YKYYTNIIDLAS--NCQILIVACSLTEETH  210 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~------~~----~~~~~~l~~l~~--~aDvv~l~~p~~~~t~  210 (313)
                      .+|||||+|.||+.+++.+... ++++ .++|++.+..      .+    ...+.+++++++  +.|+|++++|...+..
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   86 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   86 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            4899999999999999998875 5665 5788876432      12    234678999997  5999999998643322


Q ss_pred             hccCHHHHhhcCCCc-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 021361          211 HIVNRKVIDALGPSG-ILINI-GRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga-~~in~-~rg~~vd~~al~~al~~g~~~  251 (313)
                           -....++.|. +++.- ---.+-+.++|.++.++.++.
T Consensus        87 -----~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           87 -----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             -----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             -----HHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence                 1223466666 44431 122333456788887776655

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.08  E-value=0.0015  Score=59.10  Aligned_cols=104  Identities=14%  Similarity=0.160  Sum_probs=70.2

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcE-EEECCCC--cccccccccCCHHHHHh--hCCeeEEecCCChHhhhccCHHH
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPI-SYHSRSE--KSDANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V-~~~~~~~--~~~~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      .++|+|+|+ |++|+.+++.++..|+++ ..++|..  ....+...+.+++++..  ..|++++++|. +.+...+.+ .
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~~e-a   84 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAALE-A   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHHHH-H
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHHHH-H
Confidence            468999999 999999999999889985 4667764  22345666789999998  89999999984 333333332 2


Q ss_pred             HhhcCCCcEEEEcCCCC-ccCHHHHHHHHHhCCce
Q 021361          218 IDALGPSGILINIGRGA-HIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~-~vd~~al~~al~~g~~~  251 (313)
                      .+ ..-.. +|..+.|= .-+++.+.++.++..+.
T Consensus        85 ~~-~Gi~~-vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           85 AH-AGIPL-IVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             HH-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22 22222 44454442 23455788888776654

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.00056  Score=66.13  Aligned_cols=107  Identities=13%  Similarity=0.178  Sum_probs=65.1

Q ss_pred             cccccCCCEEEEEcCChhHHHHHHHHHhc-CCcEEEECCCCcccc------cccc----c---CCHHHHHhhCCeeEEec
Q 021361          138 LGSKFSGKSVGIVGLGRIGTAIAKRVEAF-GCPISYHSRSEKSDA------NYKY----Y---TNIIDLASNCQILIVAC  203 (313)
Q Consensus       138 ~~~~l~g~~vgiiG~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~------~~~~----~---~~l~~l~~~aDvv~l~~  203 (313)
                      .+..+.+++|+|+|.|.+|+.+++.|... |++|.+++|+.++..      +...    .   .++.++++++|+|+.++
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            34568899999999999999999999987 789999999764311      1110    1   24567788999999999


Q ss_pred             CCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          204 SLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       204 p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                      |..-.. . +..   ..++.|..+++++--. -+..+|.++.++..+
T Consensus        97 p~~~~~-~-v~~---a~l~~g~~vvd~~~~~-p~~~~Ll~~Ak~aGv  137 (467)
T 2axq_A           97 PYTFHP-N-VVK---SAIRTKTDVVTSSYIS-PALRELEPEIVKAGI  137 (467)
T ss_dssp             CGGGHH-H-HHH---HHHHHTCEEEECSCCC-HHHHHHHHHHHHHTC
T ss_pred             chhhhH-H-HHH---HHHhcCCEEEEeecCC-HHHHHHHHHHHHcCC
Confidence            864221 1 111   2244566677764311 123455555544433

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.05  E-value=0.00061  Score=62.80  Aligned_cols=65  Identities=18%  Similarity=0.292  Sum_probs=50.7

Q ss_pred             CEEEEEcCChhHHHHHHHHH-h-cCCcEE-EECCCCccc------cc--ccccCCHHHHHhh--CCeeEEecCCChHh
Q 021361          145 KSVGIVGLGRIGTAIAKRVE-A-FGCPIS-YHSRSEKSD------AN--YKYYTNIIDLASN--CQILIVACSLTEET  209 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~-~-~g~~V~-~~~~~~~~~------~~--~~~~~~l~~l~~~--aDvv~l~~p~~~~t  209 (313)
                      .+|||||+|.||+..++.+. . -++++. ++|++++..      .+  ...+.++++++++  .|+|++++|...+.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~   80 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHE   80 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHH
Confidence            47999999999999999998 5 467765 688876532      23  3457899999986  99999999865443

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=97.05  E-value=0.0041  Score=56.54  Aligned_cols=91  Identities=14%  Similarity=0.239  Sum_probs=68.7

Q ss_pred             ccCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCCCcccc--cccccCCHHHHHhhCCeeEEecCCC---------
Q 021361          141 KFSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRSEKSDA--NYKYYTNIIDLASNCQILIVACSLT---------  206 (313)
Q Consensus       141 ~l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~~l~~~aDvv~l~~p~~---------  206 (313)
                      .+.|++|+++|=|   ++.++++..+..+|++|.+..|..-...  ......++++.++++|+|..-.--.         
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~~~q~er~~~~~~~  223 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQ  223 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSCEECCHHHHHHHCSEEEECCCCTTTCCSSCCS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcCccCCHHHHhCCCCEEEeccchhhccccchhH
Confidence            3789999999975   6999999999999999998887542221  1123568999999999988742110         


Q ss_pred             -h-HhhhccCHHHHhhcCCCcEEEEcC
Q 021361          207 -E-ETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       207 -~-~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                       + ....-++.+.++.+|++++|..+.
T Consensus       224 ~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          224 EGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             TTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             HHHhCCCccCHHHHhhcCCCCEEECCC
Confidence             1 123457899999999999999886

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.04  E-value=0.0012  Score=60.69  Aligned_cols=64  Identities=19%  Similarity=0.286  Sum_probs=49.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC---CcE-EEECCCCccc------ccc-cccCCHHHHHh--hCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG---CPI-SYHSRSEKSD------ANY-KYYTNIIDLAS--NCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g---~~V-~~~~~~~~~~------~~~-~~~~~l~~l~~--~aDvv~l~~p~~~~  208 (313)
                      .++||||+|.||+..++.++..+   +++ .++|++.+..      .+. ..+.+++++++  +.|+|++++|...+
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   79 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQH   79 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence            48999999999999999998764   344 5678876532      122 35689999998  69999999986544

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=97.03  E-value=0.0051  Score=56.46  Aligned_cols=98  Identities=13%  Similarity=0.222  Sum_probs=73.0

Q ss_pred             ccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCcccc--------------c--ccccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSDA--------------N--YKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .+.|++|+++|=|  ++.++++..+..+|++|.+..|..-...              +  .....++++.++++|+|..-
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            3789999999986  9999999999999999999887542111              1  23367899999999998873


Q ss_pred             cCC-------ChH-----hhhccCHHHHhhc-CCCcEEEEcC---CCCccCH
Q 021361          203 CSL-------TEE-----THHIVNRKVIDAL-GPSGILINIG---RGAHIDE  238 (313)
Q Consensus       203 ~p~-------~~~-----t~~~i~~~~l~~m-k~ga~~in~~---rg~~vd~  238 (313)
                      .=.       .++     ...-++.+.++.+ ||+++|.-+.   ||.=|+.
T Consensus       244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~  295 (325)
T 1vlv_A          244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTY  295 (325)
T ss_dssp             CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCH
T ss_pred             cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCH
Confidence            321       011     2356789999999 9999999987   3544443

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=97.01  E-value=0.0054  Score=56.09  Aligned_cols=91  Identities=11%  Similarity=0.202  Sum_probs=70.6

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--------------c--ccccCCHHHHHhhCCeeEEec
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--------------N--YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      .+.|++|+++|= +++.++++..+..+|++|.+..|..-...              +  ...+.++++.++++|+|..-.
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            378999999997 89999999999999999999887543211              1  233678999999999998833


Q ss_pred             CC-------ChH-----hhhccCHHHHhhcCCCcEEEEcC
Q 021361          204 SL-------TEE-----THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       204 p~-------~~~-----t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      =.       .++     ...-++.+.++.+||+++|..+.
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence            21       111     13567899999999999999987

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.00  E-value=0.00085  Score=61.08  Aligned_cols=61  Identities=10%  Similarity=0.263  Sum_probs=45.8

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCcccc--------cc------cc-c-CCHHHHHhhCCeeEEecCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDA--------NY------KY-Y-TNIIDLASNCQILIVACSL  205 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~--------~~------~~-~-~~l~~l~~~aDvv~l~~p~  205 (313)
                      ..+|+|||.|.+|..+|..|...|.  +|..+|+..+...        +.      .. . .+. +.++.||+|+++++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v~~   85 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP   85 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECCCC
Confidence            4689999999999999999998898  8999999763211        00      10 1 133 467899999999953

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.99  E-value=0.00084  Score=61.94  Aligned_cols=65  Identities=9%  Similarity=0.250  Sum_probs=47.1

Q ss_pred             CEEEEEcCChhHHH-HHH-HHH-hcCCcEE-EECCCCccc------ccccccCCHHHHHhh--CCeeEEecCCChHh
Q 021361          145 KSVGIVGLGRIGTA-IAK-RVE-AFGCPIS-YHSRSEKSD------ANYKYYTNIIDLASN--CQILIVACSLTEET  209 (313)
Q Consensus       145 ~~vgiiG~G~iG~~-~a~-~l~-~~g~~V~-~~~~~~~~~------~~~~~~~~l~~l~~~--aDvv~l~~p~~~~t  209 (313)
                      .+|||||+|.||+. .+. .+. .-++++. ++|++++..      .+...+.++++++++  .|+|++++|...+.
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~   79 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHF   79 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHH
Confidence            47999999999996 455 333 3467765 788876532      123456899999986  89999999875443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.99  E-value=0.00094  Score=60.87  Aligned_cols=86  Identities=14%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccc-----------ccccccCCHHHHHhhCCeeEEecCCCh----
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSD-----------ANYKYYTNIIDLASNCQILIVACSLTE----  207 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~-----------~~~~~~~~l~~l~~~aDvv~l~~p~~~----  207 (313)
                      ++|+|||.|.||..+|..+...|.  +|..+|...+..           .......++ +.+++||+|+++.....    
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~t   93 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQS   93 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----CC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCCC
Confidence            799999999999999999987787  899999876411           011223566 66899999999873311    


Q ss_pred             ------Hhhhc---cCHHHHhhcCCCcEEEEcCC
Q 021361          208 ------ETHHI---VNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       208 ------~t~~~---i~~~~l~~mk~ga~~in~~r  232 (313)
                            .+..+   +-+ .+....|++++++++-
T Consensus        94 R~dl~~~n~~i~~~i~~-~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           94 YLDVVQSNVDMFRALVP-ALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHTTTCEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhCCCeEEEEcCC
Confidence                  11111   112 2233358999999765

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.96  E-value=0.00083  Score=62.46  Aligned_cols=63  Identities=13%  Similarity=0.163  Sum_probs=48.8

Q ss_pred             CEEEEEcCChhHHH-HHHHHHhc-CCcEE-EECCCCcccc-------cccccCCHHHHHhhC--CeeEEecCCCh
Q 021361          145 KSVGIVGLGRIGTA-IAKRVEAF-GCPIS-YHSRSEKSDA-------NYKYYTNIIDLASNC--QILIVACSLTE  207 (313)
Q Consensus       145 ~~vgiiG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~-------~~~~~~~l~~l~~~a--Dvv~l~~p~~~  207 (313)
                      .+|||||+|.||+. .++.++.. ++++. ++|++++...       ....+.++++++++.  |+|++++|...
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   80 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQL   80 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHH
Confidence            58999999999985 88988876 67765 7898765321       234568999999865  99999998543

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.95  E-value=0.0013  Score=60.57  Aligned_cols=97  Identities=20%  Similarity=0.243  Sum_probs=63.3

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCcccc--------------cccccCCHHHHHhhCCeeEEecCC
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDA--------------NYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~--------------~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      -.+++|+|||.|.||..+|..|...|.  ++..+|+..+...              ......+..+.+++||+|+++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            356799999999999999999988787  7999998654211              111123445678999999998754


Q ss_pred             ChH---hh-hccC---------HHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          206 TEE---TH-HIVN---------RKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       206 ~~~---t~-~~i~---------~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                      ...   ++ .++.         .+.+....|++++++++  .++|.-.
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvdi~t  132 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDILT  132 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECS--SSHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchHHHH
Confidence            321   22 1221         12344456899999996  4555433

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.95  E-value=0.0034  Score=60.71  Aligned_cols=97  Identities=13%  Similarity=0.211  Sum_probs=71.4

Q ss_pred             ccCCCEEEEEcCC----------hhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhh
Q 021361          141 KFSGKSVGIVGLG----------RIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       141 ~l~g~~vgiiG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      .++|++|+|+|+-          .-...+++.|...|.+|.+|||............++++.++.+|+|++++...+ .+
T Consensus       350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~-f~  428 (478)
T 3g79_A          350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAGHSA-YS  428 (478)
T ss_dssp             CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECSCCHH-HH
T ss_pred             CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEecCCHH-HH
Confidence            4789999999985          346889999999999999999987633333345789999999999999997532 22


Q ss_pred             hccCHH-HHhhcC-CCcEEEEcCCCCccCHHHH
Q 021361          211 HIVNRK-VIDALG-PSGILINIGRGAHIDEPEL  241 (313)
Q Consensus       211 ~~i~~~-~l~~mk-~ga~~in~~rg~~vd~~al  241 (313)
                       -++-+ ..+.|+ +..+++|+ |+- +|.+.+
T Consensus       429 -~~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          429 -SLKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             -SCCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             -hhhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence             24544 445677 47899994 654 565544

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=96.95  E-value=0.0028  Score=57.83  Aligned_cols=107  Identities=14%  Similarity=0.211  Sum_probs=73.8

Q ss_pred             ccCCCEEEEE-cC-ChhHHHHHHHHHhcCCcEE-EECCCC--cccccccccCCHHHHHh--hCCeeEEecCCChHhhhcc
Q 021361          141 KFSGKSVGIV-GL-GRIGTAIAKRVEAFGCPIS-YHSRSE--KSDANYKYYTNIIDLAS--NCQILIVACSLTEETHHIV  213 (313)
Q Consensus       141 ~l~g~~vgii-G~-G~iG~~~a~~l~~~g~~V~-~~~~~~--~~~~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i  213 (313)
                      -+..+++.|| |+ |++|+..++.++..|++++ .+++..  ....+...+.+++++.+  ..|++++++|. +.....+
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~~~~   88 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPP-PFAAAAI   88 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCH-HHHHHHH
Confidence            4567889999 99 9999999999999999844 567764  23346666789999998  89999999985 2333333


Q ss_pred             CHHHHhhcCCCcEEEEcCCCCc-cCHHHHHHHHHhC-Cce
Q 021361          214 NRKVIDALGPSGILINIGRGAH-IDEPELVSALLEG-RLA  251 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~~-vd~~al~~al~~g-~~~  251 (313)
                      .+ ..+ ..- ..+++.+-|-. -++..+.+..++. .+.
T Consensus        89 ~e-~i~-~Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           89 NE-AID-AEV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             HH-HHH-TTC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             HH-HHH-CCC-CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            33 222 111 23466666643 2344788888877 554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.95  E-value=0.002  Score=61.82  Aligned_cols=98  Identities=20%  Similarity=0.335  Sum_probs=71.9

Q ss_pred             ccccCCCEEEEEcCC----------hhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEec
Q 021361          139 GSKFSGKSVGIVGLG----------RIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      +..++|++|+|+|+.          .-...+++.|...|++|.+|||.....     .+.....++++.++.+|+|++++
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  396 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVT  396 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence            445789999999998          678899999999999999999986421     13344568899999999999998


Q ss_pred             CCChHhhhccCHHHH-hhcCCCcEEEEcCCCCccCHHHH
Q 021361          204 SLTEETHHIVNRKVI-DALGPSGILINIGRGAHIDEPEL  241 (313)
Q Consensus       204 p~~~~t~~~i~~~~l-~~mk~ga~~in~~rg~~vd~~al  241 (313)
                      ....- + -++-+.+ +.|+ +.+++|+ |+ +.|.+.+
T Consensus       397 ~~~~f-~-~~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          397 EWDAF-R-ALDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             CCTTT-T-SCCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             CCHHh-h-cCCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            76432 2 2454444 4565 4678884 65 4565544

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.95  E-value=0.0013  Score=60.29  Aligned_cols=95  Identities=15%  Similarity=0.232  Sum_probs=61.0

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------c-------cccCCHHHHHhhCCeeEEecCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------Y-------KYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------~-------~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      -++|+|||.|.||..+|..++..|.  +|..+|+..+...+        .       ....+..+.+++||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            3699999999999999999987675  79999987642211        0       00123456789999999997754


Q ss_pred             hHh-----------hhccC--HHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          207 EET-----------HHIVN--RKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       207 ~~t-----------~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                      ..-           ..++.  .+.+....|++++++++  .++|.-+
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t--NPv~~~~  130 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT--NPVDILT  130 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS--SSHHHHH
T ss_pred             CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC--CchHHHH
Confidence            210           01110  11233346889999974  4555443

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.94  E-value=0.0013  Score=58.28  Aligned_cols=94  Identities=15%  Similarity=0.220  Sum_probs=62.9

Q ss_pred             HHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------cc------
Q 021361          122 FDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DA------  181 (313)
Q Consensus       122 ~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~------  181 (313)
                      |.++.+-..|...   ....|++++|.|+|.|.+|..+++.|...|. ++.++|+..-.             ..      
T Consensus         9 y~Rq~~l~~~g~~---~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~   85 (251)
T 1zud_1            9 YSRQILLDDIALD---GQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQ   85 (251)
T ss_dssp             THHHHTSTTTHHH---HHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHH
T ss_pred             hhhhcchhhcCHH---HHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHH
Confidence            3344443456421   1246899999999999999999999999998 57787754210             00      


Q ss_pred             -----------cc--ccc------CCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          182 -----------NY--KYY------TNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       182 -----------~~--~~~------~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                                 ..  ...      .+++++++++|+|+.++. +.+++..+++...+
T Consensus        86 ~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~  141 (251)
T 1zud_1           86 VSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVA  141 (251)
T ss_dssp             HHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence                       00  000      135567889999998886 66778777775544

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.93  E-value=0.0012  Score=61.56  Aligned_cols=97  Identities=16%  Similarity=0.173  Sum_probs=60.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----------cccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----------NYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      .+|+|+|.|.+|+.+|+.|.. ..+|.+.+++.+...           ......++.++++++|+|+.++|..-      
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~------   89 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFL------   89 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGG------
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcc------
Confidence            379999999999999999975 578888888764321           01112357778899999999998531      


Q ss_pred             CHHHH-hhcCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          214 NRKVI-DALGPSGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       214 ~~~~l-~~mk~ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                      +.... ..++.|.-+++++ +..-...+|.+..++..
T Consensus        90 ~~~v~~~~~~~g~~yvD~s-~~~~~~~~l~~~a~~~g  125 (365)
T 3abi_A           90 GFKSIKAAIKSKVDMVDVS-FMPENPLELRDEAEKAQ  125 (365)
T ss_dssp             HHHHHHHHHHHTCEEEECC-CCSSCGGGGHHHHHHTT
T ss_pred             cchHHHHHHhcCcceEeee-ccchhhhhhhhhhccCC
Confidence            11221 2234556666664 22233344444444433

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.93  E-value=0.00092  Score=64.27  Aligned_cols=64  Identities=16%  Similarity=0.153  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-------cccc----c---CCHHHHHhhCCeeEEecCCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------NYKY----Y---TNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------~~~~----~---~~l~~l~~~aDvv~l~~p~~  206 (313)
                      .+++|+|+|.|.||+.+++.|...|++|.+++|+..+..       ....    .   .+++++++++|+|+.++|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            478999999999999999999999999999998764311       1110    1   24557788999999999864

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.93  E-value=0.0025  Score=58.65  Aligned_cols=105  Identities=14%  Similarity=0.193  Sum_probs=70.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhc---------CCcEE-EECCCCcccc-------------cccccC--CHHHHHhh--CCe
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF---------GCPIS-YHSRSEKSDA-------------NYKYYT--NIIDLASN--CQI  198 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~---------g~~V~-~~~~~~~~~~-------------~~~~~~--~l~~l~~~--aDv  198 (313)
                      +|||||+|.||+.+++.+...         +.+|. ++|++.....             ....+.  ++++++++  .|+
T Consensus         4 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDv   83 (327)
T 3do5_A            4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDV   83 (327)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCSE
T ss_pred             EEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCCE
Confidence            799999999999999999764         56654 5676643211             012233  89999875  899


Q ss_pred             eEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 021361          199 LIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHI-DEPELVSALLEGRLA  251 (313)
Q Consensus       199 v~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v-d~~al~~al~~g~~~  251 (313)
                      |+.++|...+... .-.-....|+.|.-++....+.+. ..+.|.++.++.+..
T Consensus        84 Vv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           84 LIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            9999997544222 122345668888888877555543 567788877777664

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.91  E-value=0.00095  Score=64.64  Aligned_cols=110  Identities=13%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             CCEEEEEcCChhH--HHHHHHHH---hc-CCcEEEECCCCcccc-----------------cccccCCHHHHHhhCCeeE
Q 021361          144 GKSVGIVGLGRIG--TAIAKRVE---AF-GCPISYHSRSEKSDA-----------------NYKYYTNIIDLASNCQILI  200 (313)
Q Consensus       144 g~~vgiiG~G~iG--~~~a~~l~---~~-g~~V~~~~~~~~~~~-----------------~~~~~~~l~~l~~~aDvv~  200 (313)
                      ..+|+|||.|.+|  .++|..|.   ++ |.+|..||+..+...                 ......++++.+++||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            4689999999974  65666664   33 789999999874310                 1122357888999999999


Q ss_pred             EecCCCh-----------HhhhccC----------------------------HHHHhhcCCCcEEEEcCCCCccCHHHH
Q 021361          201 VACSLTE-----------ETHHIVN----------------------------RKVIDALGPSGILINIGRGAHIDEPEL  241 (313)
Q Consensus       201 l~~p~~~-----------~t~~~i~----------------------------~~~l~~mk~ga~~in~~rg~~vd~~al  241 (313)
                      +++|...           .-.+++.                            .+.+....|++++||++-.-=+-..++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9997411           0011111                            123455678999999976654555555


Q ss_pred             HHHHHhCCceEEE
Q 021361          242 VSALLEGRLAGAG  254 (313)
Q Consensus       242 ~~al~~g~~~ga~  254 (313)
                      .+ +...++.|.+
T Consensus       163 ~k-~p~~rviG~c  174 (480)
T 1obb_A          163 TR-TVPIKAVGFC  174 (480)
T ss_dssp             HH-HSCSEEEEEC
T ss_pred             HH-CCCCcEEecC
Confidence            54 5556666664

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.89  E-value=0.0028  Score=58.26  Aligned_cols=94  Identities=16%  Similarity=0.276  Sum_probs=62.3

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc---------------ccc--ccCCHHHHHhhCCeeEEec
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA---------------NYK--YYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~---------------~~~--~~~~l~~l~~~aDvv~l~~  203 (313)
                      ++.++|+|||.|.+|..+|..|...|+ +|..+|+..+...               ...  ...+. +.+++||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            456799999999999999999998888 9999999875321               111  12344 7889999999987


Q ss_pred             CCC--hH-hhh-cc--C-------HHHHhhcCCCcEEEEcCCCCccCH
Q 021361          204 SLT--EE-THH-IV--N-------RKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       204 p~~--~~-t~~-~i--~-------~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      +..  +. ++. ++  |       .+.+....|++++++++  .++|.
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt--NPvd~  129 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT--NPLDA  129 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHH
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC--CCcHH
Confidence            532  11 111 11  1       12233346899999987  34443

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.86  E-value=0.0015  Score=61.09  Aligned_cols=61  Identities=21%  Similarity=0.429  Sum_probs=46.9

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc--c--c---cc---CCHHHHHhhCCeeEE
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN--Y--K---YY---TNIIDLASNCQILIV  201 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--~--~---~~---~~l~~l~~~aDvv~l  201 (313)
                      .+.|++|+|+|.|.+|+.+++.++.+|++|+++|+.+.....  +  .   .+   ..+.++++++|+|..
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            467999999999999999999999999999999987653211  0  0   01   236677888998865

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.85  E-value=0.0085  Score=54.59  Aligned_cols=91  Identities=9%  Similarity=0.170  Sum_probs=67.7

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc--------c--cccccCCHHHHHhhCCeeEEec----CC
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD--------A--NYKYYTNIIDLASNCQILIVAC----SL  205 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------~--~~~~~~~l~~l~~~aDvv~l~~----p~  205 (313)
                      .+.|++|+++|= +++.++++..+..+|++|.+..|..-..        .  ......++++.++++|+|..-.    ..
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~  230 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF  230 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC-----
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc
Confidence            378999999996 5688999999999999999888753211        1  1234579999999999998733    00


Q ss_pred             ---Ch-----HhhhccCHHHHhhcCCCcEEEEcC
Q 021361          206 ---TE-----ETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       206 ---~~-----~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                         .+     ....-++.+.++.+|++++|..+.
T Consensus       231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             -------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence               00     123457899999999999999987

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.85  E-value=0.0093  Score=54.98  Aligned_cols=96  Identities=10%  Similarity=0.144  Sum_probs=70.8

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEecC
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      +.|++|+++|= +++.++++..+..+|++|.+..|..-..              .+  .....++++.++++|+|..-.=
T Consensus       177 l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w  256 (340)
T 4ep1_A          177 FKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVW  256 (340)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCc
Confidence            78999999996 5688999999999999999888754221              11  2345789999999999887432


Q ss_pred             CC------hH-----hhhccCHHHHhhcCCCcEEEEcC---CCCccC
Q 021361          205 LT------EE-----THHIVNRKVIDALGPSGILINIG---RGAHID  237 (313)
Q Consensus       205 ~~------~~-----t~~~i~~~~l~~mk~ga~~in~~---rg~~vd  237 (313)
                      ..      ++     ...-++.+.++.+|++++|.-+.   ||.=|+
T Consensus       257 ~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt  303 (340)
T 4ep1_A          257 MSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVT  303 (340)
T ss_dssp             ------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBC
T ss_pred             cCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeC
Confidence            11      01     12457899999999999999987   564444

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.83  E-value=0.0036  Score=57.65  Aligned_cols=92  Identities=10%  Similarity=0.119  Sum_probs=70.7

Q ss_pred             ccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .+.|.+|+++|=|  +++++++..+..+|++|.+..|..-..              .+  .....++++.++++|+|..-
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            4789999999986  999999999999999999988754211              11  23367899999999999883


Q ss_pred             cCC-----C---hH-----hhhccCHHHHhhc-CCCcEEEEcCC
Q 021361          203 CSL-----T---EE-----THHIVNRKVIDAL-GPSGILINIGR  232 (313)
Q Consensus       203 ~p~-----~---~~-----t~~~i~~~~l~~m-k~ga~~in~~r  232 (313)
                      .=.     .   .+     ...-++.+.++.+ ||+++|..+.-
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP  275 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCC
Confidence            320     0   11     1246789999999 99999999864

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.81  E-value=0.0045  Score=57.04  Aligned_cols=92  Identities=10%  Similarity=0.079  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCcccc--------------c--ccccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSDA--------------N--YKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .+.|++|+++|=|  +++++++..+..+|++|.+..|..-...              +  .....++++.++++|+|..-
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD  231 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence            5889999999996  9999999999999999999887542211              1  23367899999999998873


Q ss_pred             cCC--------ChH-----hhhccCHHHHhhc-CCCcEEEEcCC
Q 021361          203 CSL--------TEE-----THHIVNRKVIDAL-GPSGILINIGR  232 (313)
Q Consensus       203 ~p~--------~~~-----t~~~i~~~~l~~m-k~ga~~in~~r  232 (313)
                      .=.        ..+     ...-++.+.++.+ ||+++|..+.-
T Consensus       232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (335)
T 1dxh_A          232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP  275 (335)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred             CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCC
Confidence            320        111     1346789999999 99999999864

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.80  E-value=0.003  Score=56.98  Aligned_cols=101  Identities=14%  Similarity=0.156  Sum_probs=64.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHh----cCCcEE-EECCCCccc-ccccccCCHHHHHh--hCCeeEEecCCChHhhhccCHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEA----FGCPIS-YHSRSEKSD-ANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~----~g~~V~-~~~~~~~~~-~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      .+|||||+|.||+..++.+..    -++++. ++|++.... .+.. +.+++++++  +.|+|++++|...+..  +   
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~--~---   81 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVR-QISLEDALRSQEIDVAYICSESSSHED--Y---   81 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHH--H---
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHH--H---
Confidence            489999999999999888864    356654 677654221 2222 478999997  6899999998644432  1   


Q ss_pred             HHhhcCCCc-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 021361          217 VIDALGPSG-ILINI-GRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       217 ~l~~mk~ga-~~in~-~rg~~vd~~al~~al~~g~~~  251 (313)
                      ....++.|. +++.- ---.+-+.++|.++.++.++.
T Consensus        82 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           82 IRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             HHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence            223344554 55552 122334456677777665544

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.80  E-value=0.002  Score=59.13  Aligned_cols=65  Identities=17%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcCChhHH-HHHHHHHhc-CCcE-EEECCCCcccccccccCCHHHHHhh---CCeeEEecCCCh
Q 021361          142 FSGKSVGIVGLGRIGT-AIAKRVEAF-GCPI-SYHSRSEKSDANYKYYTNIIDLASN---CQILIVACSLTE  207 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~-~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~~~~l~~l~~~---aDvv~l~~p~~~  207 (313)
                      ++-.+|||||+|.||+ ..++.++.. +++| .++|++.+. .+...+.++++++++   .|+|++++|...
T Consensus        23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~   93 (330)
T 4ew6_A           23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV-EGVNSYTTIEAMLDAEPSIDAVSLCMPPQY   93 (330)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC-TTSEEESSHHHHHHHCTTCCEEEECSCHHH
T ss_pred             CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh-cCCCccCCHHHHHhCCCCCCEEEEeCCcHH
Confidence            3446999999999998 788888875 6775 467877653 355567899999976   899999998533

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.80  E-value=0.004  Score=56.51  Aligned_cols=92  Identities=16%  Similarity=0.168  Sum_probs=70.6

Q ss_pred             ccCCCEEEEEcC---ChhHHHHHHHHHhc-CCcEEEECCCCccc-------cc--ccccCCHHHHHhhCCeeEEecCCCh
Q 021361          141 KFSGKSVGIVGL---GRIGTAIAKRVEAF-GCPISYHSRSEKSD-------AN--YKYYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~-g~~V~~~~~~~~~~-------~~--~~~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      .+.|++|+++|=   |++.++++..+..+ |++|.+..|..-..       .+  .....++++.++++|+|..-.--.+
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e  225 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE  225 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence            378999999998   59999999999999 99999888754321       12  2235789999999999987543321


Q ss_pred             ------Hh-----hhccCHHHHhhcCCCcEEEEcCC
Q 021361          208 ------ET-----HHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       208 ------~t-----~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                            +.     ..-++.+.++.+||+++|..+.-
T Consensus       226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP  261 (299)
T 1pg5_A          226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP  261 (299)
T ss_dssp             TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred             cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCC
Confidence                  11     24568899999999999999863

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.79  E-value=0.00086  Score=61.84  Aligned_cols=94  Identities=12%  Similarity=0.068  Sum_probs=62.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc----------------ccccCCHHHHHhhCCeeEEecC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN----------------YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----------------~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      ..++|+|||.|.||..+|..+...|+  +|..+|...+...+                .....+.++ +++||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999998887  79999986642111                011245665 899999999865


Q ss_pred             CChH---hh-hccC---------HHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          205 LTEE---TH-HIVN---------RKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       205 ~~~~---t~-~~i~---------~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      ....   ++ .++.         .+.+....|++++++++  .++|.-
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt--NPvdi~  144 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP--ELGTDK  144 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHHH
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC--CccHHH
Confidence            3211   11 1111         12334458899999986  444443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.79  E-value=0.00092  Score=58.02  Aligned_cols=84  Identities=14%  Similarity=0.131  Sum_probs=56.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc----ccccc----cCCHH---HH-HhhCCeeEEecCCChHhhh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKY----YTNII---DL-ASNCQILIVACSLTEETHH  211 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~----~~~l~---~l-~~~aDvv~l~~p~~~~t~~  211 (313)
                      .+++.|+|+|.+|+.+++.|...|+ |.++++.++..    .+...    ..+.+   ++ +.++|.|++++|....+  
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n--   85 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET--   85 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH--
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH--
Confidence            4589999999999999999999999 99999876532    12111    12333   33 67899999999864333  


Q ss_pred             ccCHHHHhhcCCC-cEEEEc
Q 021361          212 IVNRKVIDALGPS-GILINI  230 (313)
Q Consensus       212 ~i~~~~l~~mk~g-a~~in~  230 (313)
                      +.-....+.+.++ .+++.+
T Consensus        86 ~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           86 IHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             HHHHHHHHHHCSSSEEEEEC
T ss_pred             HHHHHHHHHHCCCCeEEEEE
Confidence            3333445556666 344443

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.79  E-value=0.0017  Score=55.52  Aligned_cols=87  Identities=14%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             CEEEEEc-CChhHHHHHHHHH-hcCCcEEEECCCCc-ccc-------ccc-------ccCCHHHHHhhCCeeEEecCCCh
Q 021361          145 KSVGIVG-LGRIGTAIAKRVE-AFGCPISYHSRSEK-SDA-------NYK-------YYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~-~~g~~V~~~~~~~~-~~~-------~~~-------~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      |+|.|.| .|.||+.+++.|. ..|++|.+.+|+.. ...       ...       ...+++++++++|+|+.+.....
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            6799999 5999999999999 89999999998866 321       111       11346678889999999886531


Q ss_pred             HhhhccCHHHHhhcCC-C-cEEEEcCCCCc
Q 021361          208 ETHHIVNRKVIDALGP-S-GILINIGRGAH  235 (313)
Q Consensus       208 ~t~~~i~~~~l~~mk~-g-a~~in~~rg~~  235 (313)
                       ..   ....++.|+. + ..||+++....
T Consensus        86 -~~---~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           86 -SD---MASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             -HH---HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             -hh---HHHHHHHHHhcCCCeEEEEeecee
Confidence             11   3445555543 2 36888775443

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.79  E-value=0.0023  Score=58.08  Aligned_cols=92  Identities=21%  Similarity=0.244  Sum_probs=63.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCcccc---------------c--ccccCCHHHHHhhCCeeEEecCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDA---------------N--YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~---------------~--~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +|+|||.|.+|..+|..|...|.  +|..+|+.++...               .  .....+ .+.+++||+|+++.+..
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~~   80 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCCC
Confidence            79999999999999999988887  8999999764321               0  111235 77899999999987643


Q ss_pred             hH---hh-hcc--C-------HHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          207 EE---TH-HIV--N-------RKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       207 ~~---t~-~~i--~-------~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                      ..   ++ .++  |       .+.+....|++++++++  .++|.-.
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t  125 (294)
T 1oju_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMT  125 (294)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHH
Confidence            21   11 111  1       12344457899999997  5666544

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.77  E-value=0.0029  Score=53.94  Aligned_cols=62  Identities=16%  Similarity=0.261  Sum_probs=48.0

Q ss_pred             CEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcccc----ccc-------ccCCHHHHHhhCCeeEEecCCC
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDA----NYK-------YYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----~~~-------~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ++|.|.| .|.||+.+++.|...|++|++.+|+.....    ...       ...++.++++++|+|+.+....
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            6899999 599999999999999999999999875432    111       1234667888999999887654

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.77  E-value=0.0012  Score=57.17  Aligned_cols=61  Identities=16%  Similarity=0.211  Sum_probs=42.1

Q ss_pred             CEEEEEcCChhHHHHHHH--HHhcCCcEE-EECCCCccc----cc--ccccCCHHHHHhhCCeeEEecCC
Q 021361          145 KSVGIVGLGRIGTAIAKR--VEAFGCPIS-YHSRSEKSD----AN--YKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~--l~~~g~~V~-~~~~~~~~~----~~--~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .+++|||.|++|+.+++.  +...|+++. ++|..+...    .+  +....++++++++.|++++++|.
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs  155 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA  155 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence            469999999999999994  456688864 677766542    11  12246788888777999999985

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.77  E-value=0.0013  Score=62.66  Aligned_cols=86  Identities=19%  Similarity=0.188  Sum_probs=58.7

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCH---HHH-HhhCCeeEEecCCChHhh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNI---IDL-ASNCQILIVACSLTEETH  210 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l---~~l-~~~aDvv~l~~p~~~~t~  210 (313)
                      +.+|.|+|+|.+|+.+++.|...|.+|+++|+.++..     .+...    ..+.   .++ +.++|+|+++++....+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            3469999999999999999999999999999887532     12211    1222   233 578999999998644433


Q ss_pred             hccCHHHHhhcCCCcEEEEcC
Q 021361          211 HIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~  231 (313)
                        .-......+.|+..+|--+
T Consensus        84 --~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           84 --QLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             --HHHHHHHHHCTTCEEEEEE
T ss_pred             --HHHHHHHHhCCCCeEEEEE
Confidence              3334555666765554433

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.76  E-value=0.0023  Score=59.16  Aligned_cols=64  Identities=8%  Similarity=0.202  Sum_probs=47.5

Q ss_pred             CEEEEEcCChhHH-HHHHHHHhc-CCcE-EEECCCCccc-------ccccccCCHHHHHhh--CCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGT-AIAKRVEAF-GCPI-SYHSRSEKSD-------ANYKYYTNIIDLASN--CQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~-~~a~~l~~~-g~~V-~~~~~~~~~~-------~~~~~~~~l~~l~~~--aDvv~l~~p~~~~  208 (313)
                      .+|||||+|.||+ ..+..++.. +++| .++|++....       .+...+.++++++++  .|+|++++|...+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTH   78 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHH
Confidence            3899999999998 577777665 6776 4778772211       233457899999986  8999999987544

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.76  E-value=0.0015  Score=59.61  Aligned_cols=93  Identities=18%  Similarity=0.264  Sum_probs=60.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-----------------ccccCCHHHHHhhCCeeEEecCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-----------------YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-----------------~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ++|+|||.|.+|..++..+...|. +|..+|...+...+                 .....+. +.+++||+|+++.+..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999998886 89999987643211                 1112466 6789999999998543


Q ss_pred             hH-----------hhhccC--HHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          207 EE-----------THHIVN--RKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       207 ~~-----------t~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                      ..           +..++.  .+.+....|+++++++  ..++|.-.
T Consensus        82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~--tNPv~~~t  126 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMV--NNPLDAMT  126 (309)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEEC--CSSHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEc--CCchHHHH
Confidence            21           001110  1123334589999987  34555443

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.75  E-value=0.012  Score=53.89  Aligned_cols=96  Identities=14%  Similarity=0.229  Sum_probs=70.3

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--------------c--ccccCCHHHHHhhCCeeEEecC
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--------------N--YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      +.|++|+++|= +++.++++..+..+|++|.+..|..-...              +  ...+.++++.++++|+|..-.=
T Consensus       155 l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~w  234 (323)
T 3gd5_A          155 LAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVW  234 (323)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEece
Confidence            78999999996 57889999999999999998887542211              1  2345789999999999876431


Q ss_pred             CCh----------H--hhhccCHHHHhhcCCCcEEEEcC---CCCccC
Q 021361          205 LTE----------E--THHIVNRKVIDALGPSGILINIG---RGAHID  237 (313)
Q Consensus       205 ~~~----------~--t~~~i~~~~l~~mk~ga~~in~~---rg~~vd  237 (313)
                      ...          .  ...-++.+.++.+|++++|.-+.   ||.=|+
T Consensus       235 qs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~  282 (323)
T 3gd5_A          235 TSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEIT  282 (323)
T ss_dssp             C---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBC
T ss_pred             ecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeC
Confidence            110          0  12357899999999999999986   454343

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.75  E-value=0.0026  Score=58.02  Aligned_cols=92  Identities=17%  Similarity=0.180  Sum_probs=69.0

Q ss_pred             ccCCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCCCcccc----------cc--cccCCHHHHHhhCCeeEEecCC
Q 021361          141 KFSGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRSEKSDA----------NY--KYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------~~--~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .+.|++|+++|=   |++.++++..+..+|++|.+..|..-...          +.  ....++++.++++|+|..-.=-
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ  231 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            378999999998   48999999999999999999887543211          22  2357899999999998874421


Q ss_pred             C------hHh-----hhccCHHHHhhcCCCcEEEEcCC
Q 021361          206 T------EET-----HHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       206 ~------~~t-----~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      .      ++.     ..-++.+.++.+||+++|..+.-
T Consensus       232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP  269 (308)
T 1ml4_A          232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLP  269 (308)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSC
T ss_pred             ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCCC
Confidence            1      111     23567888888999999998763

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.74  E-value=0.0092  Score=54.81  Aligned_cols=92  Identities=14%  Similarity=0.209  Sum_probs=69.1

Q ss_pred             cccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCcc--c----------------cc--ccccCCHHHHHhhCC
Q 021361          140 SKFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKS--D----------------AN--YKYYTNIIDLASNCQ  197 (313)
Q Consensus       140 ~~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~--~----------------~~--~~~~~~l~~l~~~aD  197 (313)
                      +.+.|++|+++|=|  ++.++++..+..+|++|.+..|..-.  .                .+  ...+.++++.++++|
T Consensus       157 ~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aD  236 (328)
T 3grf_A          157 NGFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVD  236 (328)
T ss_dssp             TTGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCS
T ss_pred             cccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCC
Confidence            45889999999986  88999999999999999988875432  1                12  234579999999999


Q ss_pred             eeEEe----cCCChH---------hhhccCHHHHhhcCCCcEEEEcC
Q 021361          198 ILIVA----CSLTEE---------THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       198 vv~l~----~p~~~~---------t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      +|..-    +...++         ...-++.+.++.+|++++|..+.
T Consensus       237 vvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          237 VVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             EEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence            99862    221110         12457899999999999999987

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.73  E-value=0.0019  Score=55.78  Aligned_cols=68  Identities=15%  Similarity=0.195  Sum_probs=50.5

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc-----cc-c-----ccCCHHHHHhhCCeeEEecCCC
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NY-K-----YYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~-~-----~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ...+.|++|.|.|. |.||+.+++.|...|++|.+.+|+.....     +. .     ...++.+.+..+|+|+.+....
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            45789999999998 99999999999999999999999865321     12 1     1145677888999999888754

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.72  E-value=0.0033  Score=57.69  Aligned_cols=96  Identities=20%  Similarity=0.257  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc---------------ccccc-CCHHHHHhhCCeeEEecCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA---------------NYKYY-TNIIDLASNCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~---------------~~~~~-~~l~~l~~~aDvv~l~~p~  205 (313)
                      +.++|+|||.|.+|..+|..|...|+ +|..+|+..+...               ..... .+-.+.+++||+|+++.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            45799999999999999999988777 9999998875321               11111 1234688999999998753


Q ss_pred             C--hH-hh-hcc--C-------HHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          206 T--EE-TH-HIV--N-------RKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       206 ~--~~-t~-~~i--~-------~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                      .  +. ++ .++  |       .+.+....|++++++++  .++|.-.
T Consensus        84 p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t  129 (321)
T 3p7m_A           84 PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMV  129 (321)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHH
T ss_pred             CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHH
Confidence            2  11 11 111  1       12233445899999984  5565544

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=96.71  E-value=0.0026  Score=60.81  Aligned_cols=64  Identities=9%  Similarity=0.162  Sum_probs=49.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcE-EEECCCCcccc---------c---ccccC----CHHHHHh--hCCeeEEecC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPI-SYHSRSEKSDA---------N---YKYYT----NIIDLAS--NCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~---------~---~~~~~----~l~~l~~--~aDvv~l~~p  204 (313)
                      .+|||||+|.||+..++.+... |++| .++|++++...         +   ...+.    +++++++  +.|+|++++|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp  100 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP  100 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence            5899999999999999988875 6775 57888765321         1   23456    8999997  5899999999


Q ss_pred             CChH
Q 021361          205 LTEE  208 (313)
Q Consensus       205 ~~~~  208 (313)
                      ...+
T Consensus       101 ~~~h  104 (444)
T 2ixa_A          101 WEWH  104 (444)
T ss_dssp             GGGH
T ss_pred             cHHH
Confidence            6544

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.70  E-value=0.003  Score=57.85  Aligned_cols=94  Identities=15%  Similarity=0.259  Sum_probs=62.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc---------------cccc-CCHHHHHhhCCeeEEecCCCh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN---------------YKYY-TNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~---------------~~~~-~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      +|+|||.|.||..+|..+...|.  +|..+|+..+...+               .... .+..+.+++||+|+++.+...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~~   81 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLPR   81 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC--
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCCC
Confidence            79999999999999999988777  89999987753211               1111 345678899999999876432


Q ss_pred             H---hh-hcc--C-------HHHHhhcCCCcEEEEcCCCCccCHHHH
Q 021361          208 E---TH-HIV--N-------RKVIDALGPSGILINIGRGAHIDEPEL  241 (313)
Q Consensus       208 ~---t~-~~i--~-------~~~l~~mk~ga~~in~~rg~~vd~~al  241 (313)
                      .   ++ .++  |       .+.+....|++++++++  .++|.-..
T Consensus        82 kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t~  126 (314)
T 3nep_X           82 SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA--NPLDVMTY  126 (314)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC--SSHHHHHH
T ss_pred             CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC--CchhHHHH
Confidence            1   11 111  1       12334457899999987  45555443

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.70  E-value=0.0015  Score=63.12  Aligned_cols=112  Identities=10%  Similarity=0.068  Sum_probs=71.1

Q ss_pred             CCCEEEEEcCChh-HHHHHHHHHhc-----CCcEEEECCCCcccc---------------c--ccccCCHHHHHhhCCee
Q 021361          143 SGKSVGIVGLGRI-GTAIAKRVEAF-----GCPISYHSRSEKSDA---------------N--YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       143 ~g~~vgiiG~G~i-G~~~a~~l~~~-----g~~V~~~~~~~~~~~---------------~--~~~~~~l~~l~~~aDvv  199 (313)
                      +..+|+|||.|.. |.++|..|...     +.+|..||+..+...               .  .....++++.++.||+|
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~V  106 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV  106 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEE
Confidence            3569999999998 66677666554     567999999774310               0  11235788999999999


Q ss_pred             EEecCCChH---hh----------------------------hccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361          200 IVACSLTEE---TH----------------------------HIVN--RKVIDALGPSGILINIGRGAHIDEPELVSALL  246 (313)
Q Consensus       200 ~l~~p~~~~---t~----------------------------~~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~al~  246 (313)
                      ++++|....   ++                            .++-  .+.+....|+++++|++-.-=+-..++.+...
T Consensus       107 Viaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p  186 (472)
T 1u8x_X          107 MAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRP  186 (472)
T ss_dssp             EECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHST
T ss_pred             EEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCC
Confidence            999986321   11                            0110  12344567999999987654344444444433


Q ss_pred             hCCceEEE
Q 021361          247 EGRLAGAG  254 (313)
Q Consensus       247 ~g~~~ga~  254 (313)
                      ..++.|.+
T Consensus       187 ~~rViG~c  194 (472)
T 1u8x_X          187 NSKILNIC  194 (472)
T ss_dssp             TCCEEECC
T ss_pred             CCCEEEeC
Confidence            34666554

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.70  E-value=0.0018  Score=59.62  Aligned_cols=95  Identities=17%  Similarity=0.216  Sum_probs=62.6

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc---------------ccccCCHHHHHhhCCeeEEecCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN---------------YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      .++|+|||.|.||..+|..|...|.  +|..+|+..+...+               .....+..+.+++||+|+++.+..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p   84 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN   84 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence            5689999999999999999998887  79999987543111               111223346788999999987542


Q ss_pred             h--H-hh-hcc--C-------HHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          207 E--E-TH-HIV--N-------RKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       207 ~--~-t~-~~i--~-------~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                      .  . ++ .++  |       .+.+....|++++++++  .++|.-.
T Consensus        85 ~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt--NPvd~~t  129 (326)
T 3pqe_A           85 QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT--NPVDILT  129 (326)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC--ChHHHHH
Confidence            1  1 11 111  1       12334456899999987  4455433

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.66  E-value=0.0016  Score=60.39  Aligned_cols=66  Identities=14%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             CEEEEEcCChhHHH-HHHHHHhc-CCcE-EEECCCCccc----ccccccCCHHHHHh--hCCeeEEecCCChHhh
Q 021361          145 KSVGIVGLGRIGTA-IAKRVEAF-GCPI-SYHSRSEKSD----ANYKYYTNIIDLAS--NCQILIVACSLTEETH  210 (313)
Q Consensus       145 ~~vgiiG~G~iG~~-~a~~l~~~-g~~V-~~~~~~~~~~----~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~  210 (313)
                      .+|||||+|.||+. .++.++.. +++| .++|++.++.    .+...+.+++++++  +.|+|++++|...+..
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~   80 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYE   80 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHH
Confidence            48999999999997 67777765 6776 4678876432    13455789999998  7899999999765533

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.65  E-value=0.0085  Score=55.75  Aligned_cols=91  Identities=13%  Similarity=0.156  Sum_probs=69.2

Q ss_pred             cCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCccc--c--------------c--ccccCCHHHHHhhCCeeEE
Q 021361          142 FSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSD--A--------------N--YKYYTNIIDLASNCQILIV  201 (313)
Q Consensus       142 l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~--~--------------~--~~~~~~l~~l~~~aDvv~l  201 (313)
                      +.|++|+++|=|  ++.++++..+..+|++|.+..|..-..  .              +  .....++++.++++|+|..
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt  257 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT  257 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe
Confidence            789999999988  789999999999999999988754221  1              1  2345789999999999987


Q ss_pred             ec----CCChH---------hhhccCHHHHhhcCCCcEEEEcCC
Q 021361          202 AC----SLTEE---------THHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       202 ~~----p~~~~---------t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      -+    ....+         ...-++.+.++.+|++++|.-+.-
T Consensus       258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP  301 (365)
T 4amu_A          258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLP  301 (365)
T ss_dssp             CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSC
T ss_pred             cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCC
Confidence            32    11111         124578999999999999999863

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.64  E-value=0.0019  Score=59.94  Aligned_cols=64  Identities=13%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             CEEEEEcCChhHHH-HHHHHHhc-CCcE-EEECCCCcccc----cccccCCHHHHHhh--CCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTA-IAKRVEAF-GCPI-SYHSRSEKSDA----NYKYYTNIIDLASN--CQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~-~a~~l~~~-g~~V-~~~~~~~~~~~----~~~~~~~l~~l~~~--aDvv~l~~p~~~~  208 (313)
                      .+|||||+|.||+. .+..++.. +++| .++|++.+...    +...+.++++++++  .|+|++++|...+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   78 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTH   78 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHH
Confidence            48999999999997 77777765 7776 46788765421    33456899999986  8999999996544

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.61  E-value=0.0051  Score=53.11  Aligned_cols=92  Identities=14%  Similarity=0.042  Sum_probs=62.3

Q ss_pred             cCCCEEEEEc-CChhHHHHHHHHHhcC-CcEEEECCCCccccc-----cc-------ccCCHHHHHhhCCeeEEecCCCh
Q 021361          142 FSGKSVGIVG-LGRIGTAIAKRVEAFG-CPISYHSRSEKSDAN-----YK-------YYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       142 l~g~~vgiiG-~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~-----~~-------~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      ...++|.|.| .|.||+.+++.|...| ++|.+++|+.+....     ..       ...+++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            4468999999 6999999999999999 899999988654211     11       12346678899999998876533


Q ss_pred             HhhhccCHHHHhhcCC--CcEEEEcCCCCc
Q 021361          208 ETHHIVNRKVIDALGP--SGILINIGRGAH  235 (313)
Q Consensus       208 ~t~~~i~~~~l~~mk~--ga~~in~~rg~~  235 (313)
                      ...  .....++.|+.  ...||+++....
T Consensus       101 ~~~--~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LDI--QANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HHH--HHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hhH--HHHHHHHHHHHcCCCEEEEEeccee
Confidence            211  12234555533  247888887443

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.60  E-value=0.011  Score=56.33  Aligned_cols=105  Identities=18%  Similarity=0.270  Sum_probs=71.6

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEE-EECCCCc--cc--------------c----cc--cccCCHHHHHh-
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSEK--SD--------------A----NY--KYYTNIIDLAS-  194 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~-~~~~~~~--~~--------------~----~~--~~~~~l~~l~~-  194 (313)
                      |.+++|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+..  ..              .    ++  ....+.++++. 
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~  309 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL  309 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence            456899999999999999999999999999987 4444310  00              0    00  01224566654 


Q ss_pred             hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .||+++-|..     .+.|+.+....++ -.+++-.+-+++. .++ .+.|.+..+.
T Consensus       310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~eA-~~iL~~~GI~  358 (440)
T 3aog_A          310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PAA-DDILLEKGVL  358 (440)
T ss_dssp             CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHHTCE
T ss_pred             CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HHH-HHHHHHCCCE
Confidence            7999887764     4567777777774 5677777777764 444 3556666665

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.59  E-value=0.0016  Score=62.22  Aligned_cols=102  Identities=15%  Similarity=0.153  Sum_probs=64.9

Q ss_pred             CEEEEEcCChhHH-HHHHHHHhc-CCcE-EEECCCCccc------cccc-----ccCCHHHHHh--hCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGT-AIAKRVEAF-GCPI-SYHSRSEKSD------ANYK-----YYTNIIDLAS--NCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~-~~a~~l~~~-g~~V-~~~~~~~~~~------~~~~-----~~~~l~~l~~--~aDvv~l~~p~~~~  208 (313)
                      .+|||||+|.||+ .+++.+... ++++ .++|++.+..      .+..     .+.+++++++  +.|+|++++|...+
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH
Confidence            4899999999997 899988765 5675 5788876432      1222     4678999987  79999999986444


Q ss_pred             hhhccCHHHHhhcCCCc-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 021361          209 THHIVNRKVIDALGPSG-ILINI-GRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga-~~in~-~rg~~vd~~al~~al~~g~~~  251 (313)
                      ...     ....++.|. +++.- .--.+-+.+.|.++.++.++.
T Consensus       164 ~~~-----~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  203 (433)
T 1h6d_A          164 AEF-----AIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK  203 (433)
T ss_dssp             HHH-----HHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred             HHH-----HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCe
Confidence            332     223345554 44431 112233445566666554443

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.59  E-value=0.0038  Score=57.01  Aligned_cols=64  Identities=11%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCcE-EEECCCCccc------ccccccCCHHHHH-----------hhCCeeEEecCC
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCPI-SYHSRSEKSD------ANYKYYTNIIDLA-----------SNCQILIVACSL  205 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V-~~~~~~~~~~------~~~~~~~~l~~l~-----------~~aDvv~l~~p~  205 (313)
                      .++||||+ |.||+..++.++..+.++ .++|++....      .+...+.++++++           .+.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            48999999 789999999999888875 5678876542      1234467899987           468999999986


Q ss_pred             ChH
Q 021361          206 TEE  208 (313)
Q Consensus       206 ~~~  208 (313)
                      ..+
T Consensus        84 ~~H   86 (318)
T 3oa2_A           84 YLH   86 (318)
T ss_dssp             GGH
T ss_pred             HHH
Confidence            444

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.58  E-value=0.0038  Score=56.90  Aligned_cols=64  Identities=14%  Similarity=0.227  Sum_probs=49.9

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCcE-EEECCCCccc------ccccccCCHHHHH----------hhCCeeEEecCCC
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCPI-SYHSRSEKSD------ANYKYYTNIIDLA----------SNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V-~~~~~~~~~~------~~~~~~~~l~~l~----------~~aDvv~l~~p~~  206 (313)
                      .++||||+ |.||+..++.++..+.++ .++|++.+..      .+...+.++++++          .+.|+|++++|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            48999999 689999999999888875 5778876542      1234567899988          5699999999864


Q ss_pred             hH
Q 021361          207 EE  208 (313)
Q Consensus       207 ~~  208 (313)
                      .+
T Consensus        84 ~H   85 (312)
T 3o9z_A           84 LH   85 (312)
T ss_dssp             GH
T ss_pred             hh
Confidence            43

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.53  E-value=0.0027  Score=59.08  Aligned_cols=86  Identities=27%  Similarity=0.324  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccc---cCCH---HHHHhhCCeeEEecCCChHhh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKY---YTNI---IDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~---~~~l---~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      .|.+|.|+|.|.+|..+++.++.+|++|++.+++.++.      .+...   ..+.   .++....|+|+-++.....  
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~--  264 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP--  264 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence            68899999999999999999999999999998876432      22211   1222   2223457888888764321  


Q ss_pred             hccCHHHHhhcCCCcEEEEcCCC
Q 021361          211 HIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                         -...++.|+++..+|+++..
T Consensus       265 ---~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          265 ---LLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             ---SHHHHHHEEEEEEEEECCCC
T ss_pred             ---HHHHHHHHhcCCEEEEEccC
Confidence               23567778888888888753

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.51  E-value=0.011  Score=56.43  Aligned_cols=87  Identities=10%  Similarity=0.164  Sum_probs=66.1

Q ss_pred             cCCCEEEEEcCC----------hhHHHHHHHHHhc-CCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhh
Q 021361          142 FSGKSVGIVGLG----------RIGTAIAKRVEAF-GCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       142 l~g~~vgiiG~G----------~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      ++|++|+|+|+.          .-...+++.|... |.+|.+|||.....   ....++++.++.+|+|++++...+ .+
T Consensus       313 ~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~---~~~~~~~~~~~~ad~vvi~t~~~~-f~  388 (431)
T 3ojo_A          313 LSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD---FVEHDMSHAVKDASLVLILSDHSE-FK  388 (431)
T ss_dssp             SSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT---TBCSTTHHHHTTCSEEEECSCCGG-GT
T ss_pred             cCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc---cccCCHHHHHhCCCEEEEecCCHH-Hh
Confidence            589999999985          3578899999999 99999999977543   234678999999999999997643 22


Q ss_pred             hccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          211 HIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                       -++-+.++.|+ +.+++|+ |+-+
T Consensus       389 -~~d~~~~~~~~-~~~i~D~-r~~~  410 (431)
T 3ojo_A          389 -NLSDSHFDKMK-HKVIFDT-KNVV  410 (431)
T ss_dssp             -SCCGGGGTTCS-SCEEEES-SCCC
T ss_pred             -ccCHHHHHhCC-CCEEEEC-CCCC
Confidence             23444456676 6788885 6544

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.51  E-value=0.0081  Score=54.77  Aligned_cols=91  Identities=12%  Similarity=0.233  Sum_probs=68.1

Q ss_pred             ccCCCEEEEEcC---ChhHHHHHHHHHhc-CCcEEEECCCCcccc----------c--ccccCCHHHHHhhCCeeEEecC
Q 021361          141 KFSGKSVGIVGL---GRIGTAIAKRVEAF-GCPISYHSRSEKSDA----------N--YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~----------~--~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .+.|++|+++|=   |++.++++..+..+ |++|.+..|..-...          +  .....++++.++++|+|..-. 
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~-  229 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR-  229 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECC-
Confidence            378999999998   59999999999999 999998887543211          2  223578999999999988753 


Q ss_pred             CChH-----h------hhccCHHHHhhcCCCcEEEEcCC
Q 021361          205 LTEE-----T------HHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       205 ~~~~-----t------~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ...+     .      ..-++.+.++.+||+++|..+.-
T Consensus       230 ~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP  268 (310)
T 3csu_A          230 VQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLP  268 (310)
T ss_dssp             -----------------CCBCGGGGTTCCTTCEEECCSC
T ss_pred             ccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCC
Confidence            2211     0      24568888899999999998863

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.51  E-value=0.0076  Score=55.94  Aligned_cols=92  Identities=14%  Similarity=0.164  Sum_probs=70.3

Q ss_pred             ccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCcccc--------------c--ccccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSDA--------------N--YKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .|.|.+|+++|=|  ++.++++..+..+|++|.+..|..-...              +  ...+.++++.++++|+|..-
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  252 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTD  252 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEc
Confidence            3789999999996  9999999999999999999887542111              1  23367899999999998873


Q ss_pred             cCC---C---hH-----hhhccCHHHHhhcC---CCcEEEEcCC
Q 021361          203 CSL---T---EE-----THHIVNRKVIDALG---PSGILINIGR  232 (313)
Q Consensus       203 ~p~---~---~~-----t~~~i~~~~l~~mk---~ga~~in~~r  232 (313)
                      .=.   .   .+     ...-++.+.++.+|   ++++|.-+.-
T Consensus       253 ~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          253 VWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             CSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred             ccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC
Confidence            320   0   11     13466889999999   9999999864

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.48  E-value=0.0039  Score=57.49  Aligned_cols=65  Identities=18%  Similarity=0.208  Sum_probs=46.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCCccc------ccc------------------cccCCHHHHHhhCCe
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSEKSD------ANY------------------KYYTNIIDLASNCQI  198 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~------~~~------------------~~~~~l~~l~~~aDv  198 (313)
                      .+|||+|+|.||+.+++.+... ++++. +.|++++..      .++                  ....+.++++.++|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            3799999999999999999865 46664 456653321      110                  223578899899999


Q ss_pred             eEEecCCChHh
Q 021361          199 LIVACSLTEET  209 (313)
Q Consensus       199 v~l~~p~~~~t  209 (313)
                      |+.|+|...+.
T Consensus        83 V~~aTp~~~h~   93 (334)
T 2czc_A           83 IVDATPGGIGA   93 (334)
T ss_dssp             EEECCSTTHHH
T ss_pred             EEECCCccccH
Confidence            99999975443

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.46  E-value=0.0091  Score=54.69  Aligned_cols=92  Identities=15%  Similarity=0.162  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEEec
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      .+.|++|+++|=| ++.++++..+..+|++|.+..|..-..              .+  ...+.++++.++++|+|..-+
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~  231 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT  231 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEec
Confidence            3789999999985 488888888889999999888765321              11  234678999999999999833


Q ss_pred             ----CCChH--------hhhccCHHHHhhcCCCcEEEEcCC
Q 021361          204 ----SLTEE--------THHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       204 ----p~~~~--------t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                          ....+        ...-++.+.++.+|++++|..+.-
T Consensus       232 w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP  272 (321)
T 1oth_A          232 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP  272 (321)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC
T ss_pred             cccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCC
Confidence                11111        114568899999999999999874

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.46  E-value=0.026  Score=51.30  Aligned_cols=99  Identities=14%  Similarity=0.172  Sum_probs=72.9

Q ss_pred             ccC-CCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc----------------cccccCCHHHHHhhCCeeEEe
Q 021361          141 KFS-GKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------NYKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~-g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .+. |++|+++|= +++.++++..+..+|++|.+..|..-...                ......++++.++++|+|..-
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~  221 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD  221 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence            377 999999996 56889999999999999998887542111                123457999999999999874


Q ss_pred             cC--CCh--H--------hhhccCHHHHhhcCCCcEEEEcC---CCCccCHH
Q 021361          203 CS--LTE--E--------THHIVNRKVIDALGPSGILINIG---RGAHIDEP  239 (313)
Q Consensus       203 ~p--~~~--~--------t~~~i~~~~l~~mk~ga~~in~~---rg~~vd~~  239 (313)
                      .=  ...  +        ...-++.+.++.+|++++|..+.   ||.=|+.+
T Consensus       222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~e  273 (307)
T 3tpf_A          222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEE  273 (307)
T ss_dssp             CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            40  110  0        12457899999999999999988   56655544

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.45  E-value=0.018  Score=54.70  Aligned_cols=105  Identities=13%  Similarity=0.256  Sum_probs=65.3

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEE-ECCCC----cc---ccc------------------c--cccCCHH
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY-HSRSE----KS---DAN------------------Y--KYYTNII  190 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~-~~~~~----~~---~~~------------------~--~~~~~l~  190 (313)
                      |.++.|++|.|.|+|++|+.+|+.|...|++|++ .|.+.    ..   ..+                  +  ....+.+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~  286 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE  286 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence            4568899999999999999999999999999884 45552    10   000                  0  0011223


Q ss_pred             HHHh-hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          191 DLAS-NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       191 ~l~~-~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +++. .||+++-|..     .+.|+.+....+ ...+++-.+-+++. .++ .+.|.+..+.
T Consensus       287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t-~ea-~~il~~~GI~  340 (421)
T 2yfq_A          287 EFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT-PEG-DKVLTERGIN  340 (421)
T ss_dssp             --------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC-HHH-HHHHHHHTCE
T ss_pred             chhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC-HHH-HHHHHHCCCE
Confidence            4433 6898887653     456888888888 36777888888864 443 3556666565

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.45  E-value=0.0027  Score=58.44  Aligned_cols=64  Identities=11%  Similarity=0.282  Sum_probs=47.7

Q ss_pred             CEEEEEcCChhHHH-HHHHHHhc-CCcEE-EECCCCccc------ccc-cccCCHHHHHhh--CCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTA-IAKRVEAF-GCPIS-YHSRSEKSD------ANY-KYYTNIIDLASN--CQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~------~~~-~~~~~l~~l~~~--aDvv~l~~p~~~~  208 (313)
                      .++||||+|.||+. .+..++.. +++|. ++|++++..      .+. ..+.++++++++  .|+|++++|...+
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H   99 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQH   99 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGH
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchh
Confidence            38999999999986 56777765 67765 678876532      122 346899999964  7999999997544

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=96.44  E-value=0.014  Score=52.65  Aligned_cols=65  Identities=15%  Similarity=0.116  Sum_probs=53.1

Q ss_pred             ccCCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccccCCHHHHHhhCCeeEEecCCC
Q 021361          141 KFSGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      .+.|++|+++|=   +++.++++..+..+|++|.+..|..-...     +.....++++.++++|+|.. +-..
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~q  215 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRLQ  215 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCCC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCcc
Confidence            378999999996   89999999999999999998887543221     33456899999999999998 6543

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.44  E-value=0.03  Score=53.09  Aligned_cols=105  Identities=13%  Similarity=0.195  Sum_probs=71.6

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHh-cCCcEE-EECCCCc--cc------------------ccc--cccCCHHHHHh
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEA-FGCPIS-YHSRSEK--SD------------------ANY--KYYTNIIDLAS  194 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~-~g~~V~-~~~~~~~--~~------------------~~~--~~~~~l~~l~~  194 (313)
                      |.+++|++|.|.|+|++|+.+++.|.. .|.+|+ +.|.+..  ..                  .++  ....+.++++.
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~  283 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  283 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc
Confidence            457899999999999999999999998 999987 4444210  00                  000  01124566654


Q ss_pred             -hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          195 -NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       195 -~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                       .||+++-|..     .+.|+.+....++ ..+++-.+-+++ ..++ .+.|.+..+.
T Consensus       284 ~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi~  333 (415)
T 2tmg_A          284 LDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPT-TPEA-DEILSRRGIL  333 (415)
T ss_dssp             CSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             CCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCccc-CHHH-HHHHHHCCCE
Confidence             7999887764     4567888888884 567777777775 4444 3556666665

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.43  E-value=0.0049  Score=56.40  Aligned_cols=110  Identities=15%  Similarity=0.252  Sum_probs=65.9

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------ccccCCHHHHHhhCCeeEEecCCCh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKYYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      ..+|+|||.|.+|..++..|...|.  +|..+|...+...+              .....+..+.+++||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            3589999999999999999998887  89999987643211              0111123556899999999987533


Q ss_pred             Hhhhc------------cC--HHHHhhcCCCcEEEEcCCCCccCHHHHH--HH--HHhCCceEE-E-cc
Q 021361          208 ETHHI------------VN--RKVIDALGPSGILINIGRGAHIDEPELV--SA--LLEGRLAGA-G-LD  256 (313)
Q Consensus       208 ~t~~~------------i~--~~~l~~mk~ga~~in~~rg~~vd~~al~--~a--l~~g~~~ga-~-lD  256 (313)
                      . .+.            +.  .+.+....|+++++++  ..++|.-...  +.  +...++.|. . ||
T Consensus        87 k-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           87 K-PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             C-CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence            1 111            10  1123334789999996  4555554432  22  233466665 2 56

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.41  E-value=0.0038  Score=57.90  Aligned_cols=67  Identities=13%  Similarity=0.178  Sum_probs=47.1

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhc--------CCcE-EEECCCCcccc------cc-cccCCHHHHHh--hCCeeEEec
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAF--------GCPI-SYHSRSEKSDA------NY-KYYTNIIDLAS--NCQILIVAC  203 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~--------g~~V-~~~~~~~~~~~------~~-~~~~~l~~l~~--~aDvv~l~~  203 (313)
                      ++--+|||||+|.||+.-++.++..        +++| .++|++++...      +. ..+.+++++++  +.|+|++++
T Consensus        23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Iat  102 (393)
T 4fb5_A           23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTT  102 (393)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECS
T ss_pred             CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECC
Confidence            4446899999999999877766542        4565 56788775431      22 35689999997  479999999


Q ss_pred             CCChH
Q 021361          204 SLTEE  208 (313)
Q Consensus       204 p~~~~  208 (313)
                      |..-+
T Consensus       103 P~~~H  107 (393)
T 4fb5_A          103 PNQFH  107 (393)
T ss_dssp             CGGGH
T ss_pred             ChHHH
Confidence            97554

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.41  E-value=0.0043  Score=58.92  Aligned_cols=61  Identities=21%  Similarity=0.409  Sum_probs=46.1

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----cc---ccc---CCHHHHHhhCCeeEE
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----NY---KYY---TNIIDLASNCQILIV  201 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----~~---~~~---~~l~~l~~~aDvv~l  201 (313)
                      -+.|++|+|+|-|.+|+.+++.++.+|++|.++|+.+....    ..   ..+   ..+.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999999999997665321    10   011   235556678888874

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.40  E-value=0.0066  Score=50.59  Aligned_cols=63  Identities=14%  Similarity=0.155  Sum_probs=48.5

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc-----ccc-------ccCCHHHHHhhCCeeEEecCCC
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYK-------YYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~-------~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +++|.|.|. |.||+.+++.|...|++|.+.+|+.....     ...       ...++.++++++|+|+.+....
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            479999998 99999999999999999999998765321     111       1134667788999999887653

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.39  E-value=0.018  Score=54.62  Aligned_cols=105  Identities=18%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEE-EECCCCc---c-------------ccc----c-cccCCHHHHHh-h
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSEK---S-------------DAN----Y-KYYTNIIDLAS-N  195 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~-~~~~~~~---~-------------~~~----~-~~~~~l~~l~~-~  195 (313)
                      |.++.|++|.|-|+|++|+.+|+.|...|.+|+ +.|.+..   +             ..+    + ....+.++++. .
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~  295 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD  295 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence            456899999999999999999999999999975 4454421   0             000    0 01224566554 6


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ||+++=|..     .+.|+.+....++ -.+++-.+-+++ ..+ ..+.|.+..+.
T Consensus       296 ~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t~e-A~~iL~~rGI~  343 (424)
T 3k92_A          296 CDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-TID-ATKILNERGVL  343 (424)
T ss_dssp             CSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHH-HHHHHHHTTCE
T ss_pred             ccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-CHH-HHHHHHHCCCE
Confidence            998876553     4678888888784 567777788875 444 45777777776

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=96.39  E-value=0.021  Score=52.96  Aligned_cols=93  Identities=11%  Similarity=0.086  Sum_probs=67.7

Q ss_pred             ccccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccc------------------cccccCCHHHHHhhCCee
Q 021361          139 GSKFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDA------------------NYKYYTNIIDLASNCQIL  199 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------------~~~~~~~l~~l~~~aDvv  199 (313)
                      ...|.|++|++||=+ ++.++++..+..+|++|.+..|..-...                  .+..+.++++.++++|+|
T Consensus       183 ~~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVv  262 (353)
T 3sds_A          183 SLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVI  262 (353)
T ss_dssp             CCSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEE
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEE
Confidence            345899999999976 5788888899999999998887543110                  123457999999999999


Q ss_pred             EEec--CCChH----------hhhccCHHHHhh--cCCCcEEEEcC
Q 021361          200 IVAC--SLTEE----------THHIVNRKVIDA--LGPSGILINIG  231 (313)
Q Consensus       200 ~l~~--p~~~~----------t~~~i~~~~l~~--mk~ga~~in~~  231 (313)
                      ..-.  +...+          ...-++.+.++.  +|++++|..+.
T Consensus       263 ytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          263 VTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             EECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             EeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            8632  11111          113578889988  89999999886

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.37  E-value=0.0049  Score=55.25  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=46.1

Q ss_pred             CEEEEEc-CChhHHHHHHHHHh-cCCcEEE-ECCCCccc------------ccccccCCHHHHHhhCCeeEEecC
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEA-FGCPISY-HSRSEKSD------------ANYKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~-~g~~V~~-~~~~~~~~------------~~~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .+|+|+| +|.||+.+++.+.. -++++.+ ++++....            .+...+.++++++.++|+|+-+++
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~   82 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL   82 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence            4899999 99999999998875 4777654 78764321            133346789999999999998874

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.36  E-value=0.0029  Score=56.79  Aligned_cols=38  Identities=18%  Similarity=0.282  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.||++.|+| .|.+|+.+++.|...|++|++++|+..
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~  154 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD  154 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHH
Confidence            46789999999 999999999999999999999998754

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.36  E-value=0.0064  Score=55.61  Aligned_cols=97  Identities=13%  Similarity=0.249  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC--ccccc---------------cccc-CCHHHHHhhCCeeEEec
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE--KSDAN---------------YKYY-TNIIDLASNCQILIVAC  203 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~--~~~~~---------------~~~~-~~l~~l~~~aDvv~l~~  203 (313)
                      +.++|+|||.|.+|..+|..+...|. +|..+|+.+  ....+               .... .+-.+.+++||+|+++.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            46799999999999999999998898 999999983  21110               0111 12246788999999987


Q ss_pred             CCC--hH-hh-hcc--C----H---HHHhhcCCCcEEEEcCCCCccCHHHH
Q 021361          204 SLT--EE-TH-HIV--N----R---KVIDALGPSGILINIGRGAHIDEPEL  241 (313)
Q Consensus       204 p~~--~~-t~-~~i--~----~---~~l~~mk~ga~~in~~rg~~vd~~al  241 (313)
                      ...  +. ++ .++  |    +   +.+....|++++++++  .++|.-..
T Consensus        87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs--NPvd~~t~  135 (315)
T 3tl2_A           87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT--NPVDAMTY  135 (315)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC--ChHHHHHH
Confidence            432  21 11 122  1    1   2233446899999987  45554443

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=96.34  E-value=0.0061  Score=58.97  Aligned_cols=66  Identities=17%  Similarity=0.287  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC----ChhHHHHHHHHHhc--CCcE-EEECCCCccc------ccc---cccCCHHHHHh--hCCeeEEecC
Q 021361          143 SGKSVGIVGL----GRIGTAIAKRVEAF--GCPI-SYHSRSEKSD------ANY---KYYTNIIDLAS--NCQILIVACS  204 (313)
Q Consensus       143 ~g~~vgiiG~----G~iG~~~a~~l~~~--g~~V-~~~~~~~~~~------~~~---~~~~~l~~l~~--~aDvv~l~~p  204 (313)
                      +-.+|||||+    |.||+..++.|+..  +++| .++|++.+..      .+.   ..+.+++++++  +.|+|++++|
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp  117 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK  117 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence            3458999999    99999999999876  6776 4788876532      122   35789999996  6999999998


Q ss_pred             CChH
Q 021361          205 LTEE  208 (313)
Q Consensus       205 ~~~~  208 (313)
                      ...+
T Consensus       118 ~~~H  121 (479)
T 2nvw_A          118 VPEH  121 (479)
T ss_dssp             HHHH
T ss_pred             cHHH
Confidence            5433

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.32  E-value=0.0064  Score=55.59  Aligned_cols=95  Identities=13%  Similarity=0.172  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc---------------ccccCCHHHHHhhCCeeEEecCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN---------------YKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      ...+|+|||.|.+|..++..|...|.  +|..+|...+...+               .....+..+.++.||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            34699999999999999999987775  79999986532110               01112446678999999999875


Q ss_pred             ChH---hh--------hccC--HHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          206 TEE---TH--------HIVN--RKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       206 ~~~---t~--------~~i~--~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      ...   ++        .++.  .+.+....|++++++++  .++|.-
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~  129 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDIL  129 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHHH
Confidence            321   11        1111  12233347899999975  555543

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.31  E-value=0.0027  Score=59.53  Aligned_cols=64  Identities=14%  Similarity=0.204  Sum_probs=49.9

Q ss_pred             CEEEEEcCC-hhHHHHHHHHHhc-CCcEE-EECCCCccc------ccccccCCHHHHHhh--CCeeEEecCCChH
Q 021361          145 KSVGIVGLG-RIGTAIAKRVEAF-GCPIS-YHSRSEKSD------ANYKYYTNIIDLASN--CQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G-~iG~~~a~~l~~~-g~~V~-~~~~~~~~~------~~~~~~~~l~~l~~~--aDvv~l~~p~~~~  208 (313)
                      .+|||||+| .+|+..++.+... ++++. ++|++++..      .+...+.++++++++  .|+|++++|...+
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H   77 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFH   77 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHH
Confidence            489999999 9999999999875 56754 678876532      234457899999985  9999999996544

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.30  E-value=0.0099  Score=55.92  Aligned_cols=94  Identities=13%  Similarity=0.134  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh---
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID---  219 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~---  219 (313)
                      .-.++-|+|.|.+|+.+++.++.+|++|+++|+++.......        +..+|-++...|.  +   .+..  +.   
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~~~~--------fp~a~~~~~~~p~--~---~~~~--~~~~~  267 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATTAR--------FPTADEVVVDWPH--R---YLAA--QAEAG  267 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSCTTT--------CSSSSEEEESCHH--H---HHHH--HHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhccccc--------CCCceEEEeCChH--H---HHHh--hcccc
Confidence            345899999999999999999999999999998765322111        2345544443331  1   1111  11   


Q ss_pred             hcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          220 ALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+.+++.+|=+.++.-.|...|..+|+++...
T Consensus       268 ~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~  299 (386)
T 2we8_A          268 AIDARTVVCVLTHDPKFDVPLLEVALRLPDIA  299 (386)
T ss_dssp             CCCTTCEEEECCCCHHHHHHHHHHHTTSSCCS
T ss_pred             CCCCCcEEEEEECChHhHHHHHHHHhcCCCCC
Confidence            16678888888888888999999888887333

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.30  E-value=0.0052  Score=58.72  Aligned_cols=106  Identities=13%  Similarity=0.177  Sum_probs=69.4

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc---ccccc---------------------------ccCC
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS---DANYK---------------------------YYTN  188 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---~~~~~---------------------------~~~~  188 (313)
                      +.+|.|++|.|=|+|++|..+|+.|...|++|++.+.+...   ..+..                           ...+
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            45789999999999999999999999999998765432210   00000                           0001


Q ss_pred             HHHHH-hhCCeeEEecCCChHhhhccCHHHHhhcCCC--cEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          189 IIDLA-SNCQILIVACSLTEETHHIVNRKVIDALGPS--GILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       189 l~~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~g--a~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .++++ ..||+.+=|.     +.+.|+.+..+.++.+  .++++-+-+.+ ..++ .+.|.+..|.
T Consensus       310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~-t~eA-~~iL~~rGIl  368 (450)
T 4fcc_A          310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPT-TIEA-TELFQQAGVL  368 (450)
T ss_dssp             TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCC-CHHH-HHHHHHCCCE
Confidence            12222 2588777554     3567888888888654  46777777775 4444 3667777776

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=96.29  E-value=0.004  Score=59.48  Aligned_cols=64  Identities=17%  Similarity=0.257  Sum_probs=49.9

Q ss_pred             CEEEEEcC----ChhHHHHHHHHHhc--CCcE-EEECCCCccc------ccc---cccCCHHHHHh--hCCeeEEecCCC
Q 021361          145 KSVGIVGL----GRIGTAIAKRVEAF--GCPI-SYHSRSEKSD------ANY---KYYTNIIDLAS--NCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~----G~iG~~~a~~l~~~--g~~V-~~~~~~~~~~------~~~---~~~~~l~~l~~--~aDvv~l~~p~~  206 (313)
                      .+|||||+    |.||+..++.++..  +++| .++|++.+..      .+.   ..+.+++++++  +.|+|++++|..
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~  100 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA  100 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHH
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcH
Confidence            58999999    99999999999886  6776 5788876532      122   25689999997  589999999864


Q ss_pred             hH
Q 021361          207 EE  208 (313)
Q Consensus       207 ~~  208 (313)
                      .+
T Consensus       101 ~H  102 (438)
T 3btv_A          101 SH  102 (438)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.29  E-value=0.004  Score=55.19  Aligned_cols=62  Identities=21%  Similarity=0.277  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-cc-------cccCCHHHHHhh-CCeeEEecC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-NY-------KYYTNIIDLASN-CQILIVACS  204 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~~-------~~~~~l~~l~~~-aDvv~l~~p  204 (313)
                      ++++|.|.|.|.||+.+++.|...|++|.+.+|+..... +.       ....+++++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            467899999999999999999999999999998765321 11       112345556666 999887764

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.28  E-value=0.0047  Score=57.24  Aligned_cols=100  Identities=19%  Similarity=0.267  Sum_probs=64.0

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------ccccCCHHHHHhhCCeeEEecC
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      +++++|+|||. |.+|..+|..+..+|.  +|..+|...++..+              .....+..+.+++||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            46789999998 9999999998888884  79999986542111              1123578888999999999864


Q ss_pred             CC--hH-hh-hcc--C-------HHHHhhcCCCcE-EEEcCCCCccCHHHHHH
Q 021361          205 LT--EE-TH-HIV--N-------RKVIDALGPSGI-LINIGRGAHIDEPELVS  243 (313)
Q Consensus       205 ~~--~~-t~-~~i--~-------~~~l~~mk~ga~-~in~~rg~~vd~~al~~  243 (313)
                      ..  +. ++ .++  |       .+.+....|+++ +++++  .++|.-..+.
T Consensus        86 ~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs--NPvd~~t~i~  136 (343)
T 3fi9_A           86 APRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF--NPADITGLVT  136 (343)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS--SSHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec--CchHHHHHHH
Confidence            21  11 11 111  1       112333457784 88885  5566544443

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.25  E-value=0.018  Score=53.01  Aligned_cols=90  Identities=14%  Similarity=0.137  Sum_probs=66.9

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--------------c--ccccCCHHHHHhhCCeeEEec
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--------------N--YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      .+.|++|++||= +++.++++..+..+|++|.+..|..-...              +  .....+++ .++++|+|..-+
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence            588999999996 67889999999999999998887542211              1  23357899 999999998622


Q ss_pred             --CC-----C-hH----h--hhccCHHHHhhcCCCcEEEEcC
Q 021361          204 --SL-----T-EE----T--HHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       204 --p~-----~-~~----t--~~~i~~~~l~~mk~ga~~in~~  231 (313)
                        +.     . .+    .  ..-++.+.++.+|++++|.-+.
T Consensus       251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence              10     1 11    1  1456888899999999999887

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.25  E-value=0.015  Score=53.62  Aligned_cols=62  Identities=16%  Similarity=0.228  Sum_probs=42.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCCccc------ccccc-----------------cCCHHHHHhhCCeeE
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSEKSD------ANYKY-----------------YTNIIDLASNCQILI  200 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~------~~~~~-----------------~~~l~~l~~~aDvv~  200 (313)
                      +|||+|+|.||+.+++.+... ++++. +.|++....      .+...                 ..++++++.++|+|+
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~   82 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence            799999999999999999865 56764 556553321      01111                 124456667899999


Q ss_pred             EecCCCh
Q 021361          201 VACSLTE  207 (313)
Q Consensus       201 l~~p~~~  207 (313)
                      .|+|...
T Consensus        83 ~aTp~~~   89 (340)
T 1b7g_O           83 DTTPNGV   89 (340)
T ss_dssp             ECCSTTH
T ss_pred             ECCCCch
Confidence            9998653

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.24  E-value=0.01  Score=53.66  Aligned_cols=103  Identities=14%  Similarity=0.164  Sum_probs=67.4

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCc-EEEECCCC--cccccccccCCHHHHHh--hCCeeEEecCCChHhhhccCHHHH
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCP-ISYHSRSE--KSDANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~-V~~~~~~~--~~~~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      .++.|+|. |.+|+.+++.+...|++ |..+++..  ....+...+.+++++..  ..|++++++|.. .....+.+ ..
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~-~~~~~v~e-a~   91 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAP-FAKDAVFE-AI   91 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHHHH-HH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHH-HHHHHHHH-HH
Confidence            35788899 99999999999999998 34566543  22245566789999998  899999999842 33333332 22


Q ss_pred             hhcCCCcEEEEcCCC-CccCHHHHHHHHHhCCce
Q 021361          219 DALGPSGILINIGRG-AHIDEPELVSALLEGRLA  251 (313)
Q Consensus       219 ~~mk~ga~~in~~rg-~~vd~~al~~al~~g~~~  251 (313)
                      + ..... +|..+.| ..-+++.+.++.++..+.
T Consensus        92 ~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           92 D-AGIEL-IVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             H-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             H-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            2 22222 3444444 223456888888776654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.19  E-value=0.012  Score=49.49  Aligned_cols=89  Identities=18%  Similarity=0.315  Sum_probs=58.9

Q ss_pred             EEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcccc----ccc-----ccCCHHHHHhhCCeeEEecCCChHhhh---c
Q 021361          146 SVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDA----NYK-----YYTNIIDLASNCQILIVACSLTEETHH---I  212 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----~~~-----~~~~l~~l~~~aDvv~l~~p~~~~t~~---~  212 (313)
                      +|.|.| .|.||+.+++.|...|++|.+.+|+.....    +..     ....-.+.+..+|+|+.+.........   .
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~~   81 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHVT   81 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHHH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHHH
Confidence            689999 599999999999999999999999865321    111     111111778899999998876433211   1


Q ss_pred             cCHHHHhhcCCC--cEEEEcCCCC
Q 021361          213 VNRKVIDALGPS--GILINIGRGA  234 (313)
Q Consensus       213 i~~~~l~~mk~g--a~~in~~rg~  234 (313)
                      .....++.|+..  ..+|+++...
T Consensus        82 ~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           82 SLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             HHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             HHHHHHHHHHhcCCceEEEEecce
Confidence            123455666543  5677777543

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.19  E-value=0.0041  Score=59.64  Aligned_cols=109  Identities=17%  Similarity=0.270  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---------cccccc--CCHHHHHhh-CCeeEEecCCChH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---------ANYKYY--TNIIDLASN-CQILIVACSLTEE  208 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~~~~~~--~~l~~l~~~-aDvv~l~~p~~~~  208 (313)
                      ++.||+|.|||+|..|.++|+.|+..|++|.++|......         .+....  ...++++.+ +|+|+.+-...++
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            4689999999999999999999999999999999865311         122211  233445666 8998886433222


Q ss_pred             h---h-------hccCH-HHHhhcCCCcEE-EEcCCCCccCHHHHHHHHHhCC
Q 021361          209 T---H-------HIVNR-KVIDALGPSGIL-INIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       209 t---~-------~~i~~-~~l~~mk~ga~~-in~~rg~~vd~~al~~al~~g~  249 (313)
                      +   .       .++.+ +.+..+.+..++ |--+.|+.-...-+...|+...
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            1   1       13443 344444344443 4444688777777777777644

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.19  E-value=0.0031  Score=58.52  Aligned_cols=88  Identities=25%  Similarity=0.374  Sum_probs=59.4

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC---ccc-----cccccc-C-CHHHHH----hhCCeeEEecCCC
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE---KSD-----ANYKYY-T-NIIDLA----SNCQILIVACSLT  206 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~---~~~-----~~~~~~-~-~l~~l~----~~aDvv~l~~p~~  206 (313)
                      .++|++|.|+|.|.+|..+++.++.+|++|++.+++.   ++.     .++... . ++.+.+    ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            5679999999999999999999999999999999876   331     111111 0 111111    2478888777643


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ...   + ...++.|+++..+|+++-
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            222   0 345667788888888764

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.15  E-value=0.0056  Score=55.80  Aligned_cols=92  Identities=15%  Similarity=0.239  Sum_probs=59.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc---------------cc--ccCCHHHHHhhCCeeEEecCCCh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN---------------YK--YYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~---------------~~--~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      +|+|||.|.+|..++..+...|+ +|..+|...+...+               ..  ...+. +.+++||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999999987677 69999987643211               11  12455 57899999999976532


Q ss_pred             H-----------hhhccC--HHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          208 E-----------THHIVN--RKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       208 ~-----------t~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                      .           +..++.  .+.+....|++++|+++  .++|.-+
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t  123 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT--NPVDAMT  123 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHH
Confidence            1           111111  11233346899999974  4555443

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.14  E-value=0.005  Score=56.87  Aligned_cols=92  Identities=16%  Similarity=0.198  Sum_probs=59.5

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc--------ccc-----c---ccCCHHHHHhhCCeeEEecCC
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD--------ANY-----K---YYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------~~~-----~---~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .+++|.|.|. |.+|+.+++.|...|++|.+.+|+....        .+.     .   ...++.++++.+|+|+.+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            3678999995 9999999999999999999988876432        011     1   112356678899999876653


Q ss_pred             ChHhhhccCHHHHhhcCC-C--cEEEEcCCCC
Q 021361          206 TEETHHIVNRKVIDALGP-S--GILINIGRGA  234 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~-g--a~~in~~rg~  234 (313)
                      .....+......++.++. |  ..||++|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            211111222344444432 3  4788887654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.13  E-value=0.0061  Score=56.09  Aligned_cols=87  Identities=23%  Similarity=0.358  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccc-cCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKY-YTNIIDLASNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~-~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++..     ++.. ..+.+++.+..|+|+-++.....     -..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~-----~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD-----LKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC-----HHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH-----HHH
Confidence            478999999999999999999999999999988775421     2111 12223333367777777654311     234


Q ss_pred             HHhhcCCCcEEEEcCCCC
Q 021361          217 VIDALGPSGILINIGRGA  234 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg~  234 (313)
                      .++.++++..++.+|...
T Consensus       251 ~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          251 YLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             HHTTEEEEEEEEECCCCC
T ss_pred             HHHHHhcCCEEEEECCCC
Confidence            567788888888876533

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.12  E-value=0.0045  Score=58.55  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=63.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC---CcEEEECCCCcccc------------ccc-------ccCCHHHHHhh--CCeeE
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG---CPISYHSRSEKSDA------------NYK-------YYTNIIDLASN--CQILI  200 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g---~~V~~~~~~~~~~~------------~~~-------~~~~l~~l~~~--aDvv~  200 (313)
                      ++|+|+|.|.||+.+++.|...|   .+|.+++|+.++..            ...       ...++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999888   38999998764311            011       02346777887  89999


Q ss_pred             EecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccC--------HHHHHHHHHhCCce
Q 021361          201 VACSLTEETHHIVNRKVIDALGPSGILINIGRGAHID--------EPELVSALLEGRLA  251 (313)
Q Consensus       201 l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd--------~~al~~al~~g~~~  251 (313)
                      .++|.... ..++ .   ..++.|.-+++++--...+        ..++.+..++..+.
T Consensus        82 n~ag~~~~-~~v~-~---a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~  135 (405)
T 4ina_A           82 NIALPYQD-LTIM-E---ACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVM  135 (405)
T ss_dssp             ECSCGGGH-HHHH-H---HHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCE
T ss_pred             ECCCcccC-hHHH-H---HHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCE
Confidence            98874321 1111 1   2234566677764432221        12555555554443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.12  E-value=0.019  Score=52.39  Aligned_cols=36  Identities=25%  Similarity=0.171  Sum_probs=31.1

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      +..++|.|.|. |.+|+.+++.|...|++|++.+|+.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34678999998 9999999999999999999999976

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.12  E-value=0.0051  Score=58.03  Aligned_cols=68  Identities=15%  Similarity=0.252  Sum_probs=48.5

Q ss_pred             ccCCC-EEEEEcCChhHHHHHHHHHhc---------CCcE-EEECCCCccc------ccc-cccCCHHHHHh--hCCeeE
Q 021361          141 KFSGK-SVGIVGLGRIGTAIAKRVEAF---------GCPI-SYHSRSEKSD------ANY-KYYTNIIDLAS--NCQILI  200 (313)
Q Consensus       141 ~l~g~-~vgiiG~G~iG~~~a~~l~~~---------g~~V-~~~~~~~~~~------~~~-~~~~~l~~l~~--~aDvv~  200 (313)
                      .++.| +|||||+|.||+.-++.++..         +.+| .++|++++..      .+. ..+.+++++++  +.|+|+
T Consensus        22 ~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~  101 (412)
T 4gqa_A           22 SMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVD  101 (412)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEE
T ss_pred             cccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEE
Confidence            34444 899999999999988888754         3455 4678876532      122 35689999997  589999


Q ss_pred             EecCCChH
Q 021361          201 VACSLTEE  208 (313)
Q Consensus       201 l~~p~~~~  208 (313)
                      +++|...+
T Consensus       102 I~tp~~~H  109 (412)
T 4gqa_A          102 ITSPNHLH  109 (412)
T ss_dssp             ECSCGGGH
T ss_pred             ECCCcHHH
Confidence            99997544

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.11  E-value=0.0074  Score=54.92  Aligned_cols=67  Identities=10%  Similarity=0.123  Sum_probs=46.8

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCC
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      ...+.+++|.|.|. |.||+.+++.|...|++|++.+|.....      .......++.++++++|+|+.+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            45688999999998 9999999999999999999999876531      0111123466788899999877654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.11  E-value=0.0099  Score=54.75  Aligned_cols=96  Identities=15%  Similarity=0.231  Sum_probs=63.2

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc----------------ccccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN----------------YKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----------------~~~~~~l~~l~~~aDvv~l~  202 (313)
                      ..+.++|+|||.|.||..+|..+...|.  ++..+|...+...+                .....+.+ .+++||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            4567899999999999999999987776  79999987542111                01123455 58999999998


Q ss_pred             cCCCh---Hhh-hccC---------HHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          203 CSLTE---ETH-HIVN---------RKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       203 ~p~~~---~t~-~~i~---------~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      .....   .++ .++.         .+.+....|++++++++  .++|.-
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvdi~  142 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS--NPVDIL  142 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHHH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--ChHHHH
Confidence            64321   122 1221         12334457899999997  445543

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.10  E-value=0.0052  Score=57.79  Aligned_cols=65  Identities=12%  Similarity=0.068  Sum_probs=50.4

Q ss_pred             CCEEEEEcCCh---hHHHHHHHHHhcC-CcEE--EECCCCccc------ccc---cccCCHHHHHhh-------CCeeEE
Q 021361          144 GKSVGIVGLGR---IGTAIAKRVEAFG-CPIS--YHSRSEKSD------ANY---KYYTNIIDLASN-------CQILIV  201 (313)
Q Consensus       144 g~~vgiiG~G~---iG~~~a~~l~~~g-~~V~--~~~~~~~~~------~~~---~~~~~l~~l~~~-------aDvv~l  201 (313)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++|++++..      .+.   ..+.++++++++       .|+|++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            35899999999   9999988887665 6765  468876532      233   457899999986       899999


Q ss_pred             ecCCChH
Q 021361          202 ACSLTEE  208 (313)
Q Consensus       202 ~~p~~~~  208 (313)
                      ++|...+
T Consensus        92 ~tp~~~H   98 (398)
T 3dty_A           92 ATPNGTH   98 (398)
T ss_dssp             ESCGGGH
T ss_pred             CCCcHHH
Confidence            9997544

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=96.10  E-value=0.016  Score=52.49  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCc-EEEECCCC--cccccccccCCHHHHHh--h-CCeeEEecCCChHhhhccCHHH
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCP-ISYHSRSE--KSDANYKYYTNIIDLAS--N-CQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~-V~~~~~~~--~~~~~~~~~~~l~~l~~--~-aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      .++.|+|. |.+|+.+++.+...|++ |..+++..  ....+...+.+++++..  . .|++++++|.. .+...+.+ .
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~~~~v~e-a   91 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAP-FAPDAVYE-A   91 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGG-GHHHHHHH-H
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHH-HHHHHHHH-H
Confidence            35777798 99999999999988998 44666653  22245666789999987  5 99999999853 33333332 2


Q ss_pred             HhhcCCCcEEEEcCCCC-ccCHHHHHHHHHhCCce
Q 021361          218 IDALGPSGILINIGRGA-HIDEPELVSALLEGRLA  251 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~-~vd~~al~~al~~g~~~  251 (313)
                      .+ ..-.. +|..+.|= .-+++.+.++.++..+.
T Consensus        92 ~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           92 VD-AGIRL-VVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             HH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22 22222 33344442 23456788888776654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.10  E-value=0.025  Score=50.65  Aligned_cols=39  Identities=31%  Similarity=0.359  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ..++||++.|.|. |.||+.+|+.|...|++|.+.+|+..
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4689999999997 67999999999999999998888754

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.09  E-value=0.023  Score=54.51  Aligned_cols=91  Identities=16%  Similarity=0.331  Sum_probs=66.6

Q ss_pred             cccCCCEEEEEcCC----------hhHHHHHHHHHhcCCcEEEECCCCccc----cc--ccccCCHHHHHhhCCeeEEec
Q 021361          140 SKFSGKSVGIVGLG----------RIGTAIAKRVEAFGCPISYHSRSEKSD----AN--YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       140 ~~l~g~~vgiiG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~--~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      ..++|++|+|+|+-          .-...+++.|...|++|.+|||.....    .+  .....++++.++.+|+|++++
T Consensus       314 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t  393 (450)
T 3gg2_A          314 GNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVT  393 (450)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECS
T ss_pred             ccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEcc
Confidence            45789999999985          356889999999999999999987421    11  334568899999999999999


Q ss_pred             CCChHhhhccCHHHH-hhcCCCcEEEEcCCCC
Q 021361          204 SLTEETHHIVNRKVI-DALGPSGILINIGRGA  234 (313)
Q Consensus       204 p~~~~t~~~i~~~~l-~~mk~ga~~in~~rg~  234 (313)
                      .... .+ -++-+.+ +.|+ +.+++|+ |+-
T Consensus       394 ~~~~-f~-~~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          394 EWKE-FR-MPDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             CCGG-GS-SCCHHHHHHHSS-SCEEEES-SCC
T ss_pred             CCHH-Hh-hcCHHHHHHhcC-CCEEEEC-CCC
Confidence            7643 22 2454444 4565 6788884 654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.09  E-value=0.028  Score=52.15  Aligned_cols=86  Identities=15%  Similarity=0.182  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc----c---CCHHHHHh-----hCCeeEEecC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY----Y---TNIIDLAS-----NCQILIVACS  204 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~----~---~~l~~l~~-----~aDvv~l~~p  204 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..    .   .++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            47899999999999999999999999 799998876542     12211    1   23444333     3788888775


Q ss_pred             CChHhhhccCHHHHhhcCCC-cEEEEcCCC
Q 021361          205 LTEETHHIVNRKVIDALGPS-GILINIGRG  233 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~g-a~~in~~rg  233 (313)
                      ..+.     -...++.++++ ..++.++-.
T Consensus       272 ~~~~-----~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          272 NVGV-----MRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSCC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEEcCC
Confidence            3222     13466778888 888888743

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.08  E-value=0.012  Score=55.82  Aligned_cols=65  Identities=14%  Similarity=0.195  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCh---hHHHHHHHHHhcC-CcEE--EECCCCccc------ccc---cccCCHHHHHhh-------CCeeEE
Q 021361          144 GKSVGIVGLGR---IGTAIAKRVEAFG-CPIS--YHSRSEKSD------ANY---KYYTNIIDLASN-------CQILIV  201 (313)
Q Consensus       144 g~~vgiiG~G~---iG~~~a~~l~~~g-~~V~--~~~~~~~~~------~~~---~~~~~l~~l~~~-------aDvv~l  201 (313)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++|++++..      .+.   ..+.++++++++       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            35899999999   9999888887665 6765  568876532      123   457899999987       899999


Q ss_pred             ecCCChH
Q 021361          202 ACSLTEE  208 (313)
Q Consensus       202 ~~p~~~~  208 (313)
                      ++|...+
T Consensus       117 ~tp~~~H  123 (417)
T 3v5n_A          117 VTPNHVH  123 (417)
T ss_dssp             CSCTTSH
T ss_pred             CCCcHHH
Confidence            9997544

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.07  E-value=0.013  Score=52.58  Aligned_cols=39  Identities=31%  Similarity=0.337  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ..+.||++.|.|.+   .||+.+|+.|...|++|.+.+|+.+
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~   67 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSET   67 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChH
Confidence            46899999999986   8999999999999999999988753

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.07  E-value=0.0092  Score=54.60  Aligned_cols=93  Identities=16%  Similarity=0.258  Sum_probs=60.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------ccccCCHHHHHhhCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      .+|+|||.|.+|..++..|...+.  +|..+|...+...+              .....+..+.++.||+|+++.+....
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~   85 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK   85 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            589999999999999999987776  79999986532211              11112446678999999999875322


Q ss_pred             h---h--------hccC--HHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          209 T---H--------HIVN--RKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       209 t---~--------~~i~--~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      -   +        .++.  .+.+....|+++++++  +.++|.-
T Consensus        86 ~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~  127 (318)
T 1ez4_A           86 PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA--ANPVDIL  127 (318)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTTCCSEEEEC--SSSHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--CCcHHHH
Confidence            1   1        1111  1223334789999997  4555543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.07  E-value=0.029  Score=52.03  Aligned_cols=85  Identities=13%  Similarity=0.189  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc---c----CCHHHHHh-----hCCeeEEecC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY---Y----TNIIDLAS-----NCQILIVACS  204 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~---~----~~l~~l~~-----~aDvv~l~~p  204 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..   .    .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            47899999999999999999999999 799998876542     12211   0    12333333     3688887775


Q ss_pred             CChHhhhccCHHHHhhcCCC-cEEEEcCC
Q 021361          205 LTEETHHIVNRKVIDALGPS-GILINIGR  232 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~g-a~~in~~r  232 (313)
                      ..+.     -...++.++++ ..++.+|-
T Consensus       271 ~~~~-----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          271 RLDT-----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CHHH-----HHHHHHHBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEecc
Confidence            3221     12456777887 77777763

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.05  E-value=0.022  Score=52.80  Aligned_cols=90  Identities=13%  Similarity=0.103  Sum_probs=67.2

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--------------c--ccccCCHHHHHhhCCeeEEec
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--------------N--YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      .+.|++|++||= +++.++++..+..+|++|.+..|..-...              +  +....+++ .++++|+|..-+
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence            588999999996 67889999999999999998887542211              1  23357899 999999998622


Q ss_pred             ----CC---C-hH----h--hhccCHHHHhhcCCCcEEEEcC
Q 021361          204 ----SL---T-EE----T--HHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       204 ----p~---~-~~----t--~~~i~~~~l~~mk~ga~~in~~  231 (313)
                          ..   . .+    .  ..-++.+.++.+|++++|.-+.
T Consensus       229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence                00   0 11    1  1457889999999999999987

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.05  E-value=0.019  Score=53.11  Aligned_cols=82  Identities=12%  Similarity=0.102  Sum_probs=52.3

Q ss_pred             CEEEEEc-CChhHHHHHHHHHhcC-CcEEEECCCCccc--c--------c--ccccCCHHHHHhhCCeeEEecCCChHhh
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEAFG-CPISYHSRSEKSD--A--------N--YKYYTNIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~--~--------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      .+|||+| .|.+|+.+++.|.... +++.+..+..+..  .        +  .....++++ +.++|+|++|+|.....+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s~~   83 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVFAR   83 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHHHH
Confidence            4899999 8999999999998664 4666554332211  0        0  001223444 478999999999754322


Q ss_pred             hccCHHHHhhcCCCcEEEEcCC
Q 021361          211 HIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~r  232 (313)
                       + -.   ..++.|..+|+.+-
T Consensus        84 -~-a~---~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           84 -E-FD---RYSALAPVLVDLSA  100 (345)
T ss_dssp             -T-HH---HHHTTCSEEEECSS
T ss_pred             -H-HH---HHHHCCCEEEEcCc
Confidence             1 11   22467888999875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.03  E-value=0.012  Score=53.33  Aligned_cols=67  Identities=10%  Similarity=0.009  Sum_probs=49.8

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc-------cccc-------cCCHHHHHh--hCCeeEE
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA-------NYKY-------YTNIIDLAS--NCQILIV  201 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------~~~~-------~~~l~~l~~--~aDvv~l  201 (313)
                      -+.+.|++|.|.|. |.||+.+++.|...|++|++.+|......       ....       ..+++++++  .+|+|+.
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih   94 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVH   94 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence            35689999999997 99999999999999999999988543211       1110       123556777  7898888


Q ss_pred             ecCC
Q 021361          202 ACSL  205 (313)
Q Consensus       202 ~~p~  205 (313)
                      +...
T Consensus        95 ~A~~   98 (330)
T 2pzm_A           95 SAAA   98 (330)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            7754

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.02  E-value=0.012  Score=53.95  Aligned_cols=95  Identities=18%  Similarity=0.243  Sum_probs=61.6

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------ccccCCHHHHHhhCCeeEEecCCCh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKYYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      ..+|+|||.|.+|..++..|...+.  +|..+|...+...+              .....+..+.++.||+|+++.+...
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~   88 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4699999999999999999987775  79999986532111              1111245667899999999987543


Q ss_pred             Hh---h--------hccC--HHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          208 ET---H--------HIVN--RKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       208 ~t---~--------~~i~--~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                      .-   +        .++.  .+.+....|+++++++  +.++|.-.
T Consensus        89 k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t  132 (326)
T 2zqz_A           89 KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVDILT  132 (326)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHHHHH
Confidence            21   0        1111  1223334789999997  55555533

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.02  E-value=0.006  Score=56.09  Aligned_cols=85  Identities=21%  Similarity=0.311  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc-----cCCHHHHHh------hCCeeEEecCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY-----YTNIIDLAS------NCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~~l~~------~aDvv~l~~p~  205 (313)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.+++.++.     .++..     ..++.+.+.      ..|+|+.++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            68899999999999999999999999 899999876432     11110     122333222      36777776653


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      .+..     ...++.++++..++.++.
T Consensus       247 ~~~~-----~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PKAL-----EQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             HHHH-----HHHHHHEEEEEEEEECCC
T ss_pred             HHHH-----HHHHHHHhcCCEEEEEcc
Confidence            2211     234566777777777764

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.01  E-value=0.022  Score=54.75  Aligned_cols=92  Identities=8%  Similarity=0.087  Sum_probs=66.7

Q ss_pred             ccCCCEEEEEcCCh----------hHHHHHHHHHhcCCcEEEECCCCcccc------------------cccccCCHHHH
Q 021361          141 KFSGKSVGIVGLGR----------IGTAIAKRVEAFGCPISYHSRSEKSDA------------------NYKYYTNIIDL  192 (313)
Q Consensus       141 ~l~g~~vgiiG~G~----------iG~~~a~~l~~~g~~V~~~~~~~~~~~------------------~~~~~~~l~~l  192 (313)
                      .+.|++|+|+|+.-          -...+++.|...|.+|.+|||......                  +.....+..+.
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA  405 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence            36899999999974          778899999999999999999753211                  12233578889


Q ss_pred             HhhCCeeEEecCCChHhhhccCHHH-HhhcCCCcEEEEcCCCCc
Q 021361          193 ASNCQILIVACSLTEETHHIVNRKV-IDALGPSGILINIGRGAH  235 (313)
Q Consensus       193 ~~~aDvv~l~~p~~~~t~~~i~~~~-l~~mk~ga~~in~~rg~~  235 (313)
                      ++.+|+|++++... +.+ -++-+. .+.|+...+++|+ |+-+
T Consensus       406 ~~~ad~~vi~t~~~-~f~-~~~~~~~~~~~~~~~~i~D~-r~~~  446 (467)
T 2q3e_A          406 CDGAHAVVICTEWD-MFK-ELDYERIHKKMLKPAFIFDG-RRVL  446 (467)
T ss_dssp             HTTCSEEEECSCCG-GGG-GSCHHHHHHHSCSSCEEEES-SCTT
T ss_pred             HhCCcEEEEecCCh-hhh-cCCHHHHHHhcCCCCEEEeC-CCcC
Confidence            99999999999864 323 245444 4567766668875 6543

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.00  E-value=0.0037  Score=53.89  Aligned_cols=61  Identities=15%  Similarity=0.253  Sum_probs=44.1

Q ss_pred             CEEEEEcCChhHHHHHHH--HHhcCCcE-EEECCCCccc----cc--ccccCCHHHHHh-hCCeeEEecCCC
Q 021361          145 KSVGIVGLGRIGTAIAKR--VEAFGCPI-SYHSRSEKSD----AN--YKYYTNIIDLAS-NCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~--l~~~g~~V-~~~~~~~~~~----~~--~~~~~~l~~l~~-~aDvv~l~~p~~  206 (313)
                      ++++|||.|.+|+.+++.  ... |+++ -++|..+...    .+  .....+++++++ +.|+|++++|..
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~  151 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE  151 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence            589999999999999995  334 7775 4667665432    12  112467888886 589999999853

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.99  E-value=0.0057  Score=56.25  Aligned_cols=64  Identities=14%  Similarity=0.158  Sum_probs=49.5

Q ss_pred             CEEEEEcCC-hhHHHHHHHHHhc--CCcE-EEECCCCcccc------cc-cccCCHHHHHh--hCCeeEEecCCChH
Q 021361          145 KSVGIVGLG-RIGTAIAKRVEAF--GCPI-SYHSRSEKSDA------NY-KYYTNIIDLAS--NCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G-~iG~~~a~~l~~~--g~~V-~~~~~~~~~~~------~~-~~~~~l~~l~~--~aDvv~l~~p~~~~  208 (313)
                      .+|||||+| .+|+..++.++..  ++++ .++|++++...      +. ..+.+++++++  +.|+|++++|....
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   95 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN   95 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence            489999999 8999999999876  4665 57888765321      22 45789999997  58999999986443

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.96  E-value=0.022  Score=52.89  Aligned_cols=87  Identities=15%  Similarity=0.202  Sum_probs=56.4

Q ss_pred             CEEEEEc-CChhHHHHHHHHHhcC------CcEEEEC-CC-Ccccc--------c---cccc-CCHHHHHhhCCeeEEec
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEAFG------CPISYHS-RS-EKSDA--------N---YKYY-TNIIDLASNCQILIVAC  203 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~~g------~~V~~~~-~~-~~~~~--------~---~~~~-~~l~~l~~~aDvv~l~~  203 (313)
                      .+|+|+| .|.+|+.+.+.|...+      .++..+. ++ ..+..        +   .... .+. +.++.+|+|++|+
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al   88 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL   88 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence            5899999 9999999999998766      4665553 32 21110        0   0111 133 3456899999999


Q ss_pred             CCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCH
Q 021361          204 SLTEETHHIVNRKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       204 p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      |...      ..+....++.|..+|+.|..--.+.
T Consensus        89 g~~~------s~~~~~~~~~G~~vIDlSa~~R~~~  117 (352)
T 2nqt_A           89 PHGH------SAVLAQQLSPETLIIDCGADFRLTD  117 (352)
T ss_dssp             TTSC------CHHHHHHSCTTSEEEECSSTTTCSC
T ss_pred             CCcc------hHHHHHHHhCCCEEEEECCCccCCc
Confidence            8642      4445455566899999885544443

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.96  E-value=0.0072  Score=55.41  Aligned_cols=86  Identities=13%  Similarity=0.217  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc-----cCCHHHHH----hhCCeeEEecCCChH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY-----YTNIIDLA----SNCQILIVACSLTEE  208 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~-----~~~l~~l~----~~aDvv~l~~p~~~~  208 (313)
                      .|++|.|+|.|.+|..+++.++.+|++|++.+++.++.     .+...     ..++.+.+    ...|+|+.++...+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            47899999999999999999999999999999876432     12111     12333222    357888887753222


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          209 THHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                           -...++.|+++..++.++..
T Consensus       244 -----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          244 -----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             -----HHHHHHHEEEEEEEEECCCC
T ss_pred             -----HHHHHHHhhcCCEEEEeccc
Confidence                 13466778888888888754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.96  E-value=0.031  Score=51.81  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc---c----CCHHHHHh-----hCCeeEEecC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY---Y----TNIIDLAS-----NCQILIVACS  204 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~---~----~~l~~l~~-----~aDvv~l~~p  204 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++.     .++..   .    .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            47899999999999999999999999 799998876542     22211   1    13444333     4788888775


Q ss_pred             CChHhhhccCHHHHhhcCCC-cEEEEcCC
Q 021361          205 LTEETHHIVNRKVIDALGPS-GILINIGR  232 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~g-a~~in~~r  232 (313)
                      ..+.     -...++.++++ ..++.++-
T Consensus       271 ~~~~-----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 RIET-----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECCC
T ss_pred             CHHH-----HHHHHHHHhcCCCEEEEEcc
Confidence            3221     13466778888 88888774

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=95.96  E-value=0.0081  Score=55.29  Aligned_cols=105  Identities=10%  Similarity=0.089  Sum_probs=64.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc--------CCcE-EEECCCCccccc---------------c-cccC---CHHHHH-hh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF--------GCPI-SYHSRSEKSDAN---------------Y-KYYT---NIIDLA-SN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~--------g~~V-~~~~~~~~~~~~---------------~-~~~~---~l~~l~-~~  195 (313)
                      -+|||||+|.||+.+++.+...        +++| .++|++......               . ..+.   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            4799999999999999998754        3565 466776543211               1 1233   788888 35


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCc-cCHHHHHHHHHhCCc
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAH-IDEPELVSALLEGRL  250 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~-vd~~al~~al~~g~~  250 (313)
                      .|+|+.++|.. .+.+.--+-..+.|+.|.-+|..--..+ ...+.|.++.++.+.
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv  141 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNR  141 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCC
Confidence            89999999975 1111111223445667776665433333 234567776665554

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.96  E-value=0.0086  Score=55.58  Aligned_cols=65  Identities=11%  Similarity=0.180  Sum_probs=49.4

Q ss_pred             CCEEEEEcCChhHH-HHHHHHHhcCCcE-EEECCCCccc------cc-ccccCCHHHHHhh--CCeeEEecCCChH
Q 021361          144 GKSVGIVGLGRIGT-AIAKRVEAFGCPI-SYHSRSEKSD------AN-YKYYTNIIDLASN--CQILIVACSLTEE  208 (313)
Q Consensus       144 g~~vgiiG~G~iG~-~~a~~l~~~g~~V-~~~~~~~~~~------~~-~~~~~~l~~l~~~--aDvv~l~~p~~~~  208 (313)
                      -.+|||||+|.+|. .++..++.-++++ .++|++++..      .+ ...+.++++++++  .|+|++++|...+
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H  101 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSER  101 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHH
Confidence            46899999999995 5777777788885 5788876532      12 3457899999985  8999999986443

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.95  E-value=0.012  Score=50.59  Aligned_cols=65  Identities=18%  Similarity=0.204  Sum_probs=50.0

Q ss_pred             cCCCEEEEEc-CChhHHHHHHHHHhcCC--cEEEECCCCcccc-----cc-------cccCCHHHHHhhCCeeEEecCCC
Q 021361          142 FSGKSVGIVG-LGRIGTAIAKRVEAFGC--PISYHSRSEKSDA-----NY-------KYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       142 l~g~~vgiiG-~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~-----~~-------~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +.++++.|.| .|.||+.+++.|...|+  +|++.+|+.....     ..       ....+++++++..|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5688999999 69999999999999999  9999988764321     11       11235666788899999988754

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.94  E-value=0.059  Score=51.41  Aligned_cols=121  Identities=14%  Similarity=0.179  Sum_probs=91.4

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCC-
Q 021361           90 AVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGC-  168 (313)
Q Consensus        90 gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-  168 (313)
                      .|++.|.. .+  .+|=-+++-+++.+|-                   .|+.|...+|.|.|.|..|-.+|+.+...|. 
T Consensus       187 ~ipvFnDD-~q--GTA~V~lAgllnAlki-------------------~gk~l~d~riV~~GAGaAGigia~ll~~~G~~  244 (487)
T 3nv9_A          187 DIPVWHDD-QQ--GTASVTLAGLLNALKL-------------------VKKDIHECRMVFIGAGSSNTTCLRLIVTAGAD  244 (487)
T ss_dssp             SSCEEETT-TH--HHHHHHHHHHHHHHHH-------------------HTCCGGGCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             cCCccccc-cc--hHHHHHHHHHHHHHHH-------------------hCCChhhcEEEEECCCHHHHHHHHHHHHcCCC
Confidence            79999985 33  3777788888887763                   2567888999999999999999999999998 


Q ss_pred             --cEEEECCCC----ccc-c-----c-c----------cccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCc
Q 021361          169 --PISYHSRSE----KSD-A-----N-Y----------KYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSG  225 (313)
Q Consensus       169 --~V~~~~~~~----~~~-~-----~-~----------~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga  225 (313)
                        +|+.+|+..    ... .     . .          ....++.|+++.+|+++= +...  ..+.+.++.++.|.+..
T Consensus       245 ~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG-~S~~--~pg~ft~e~V~~Ma~~P  321 (487)
T 3nv9_A          245 PKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLIS-LSTP--GPGVVKAEWIKSMGEKP  321 (487)
T ss_dssp             GGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEE-CCCS--SCCCCCHHHHHTSCSSC
T ss_pred             cccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEE-eccc--CCCCCCHHHHHhhcCCC
Confidence              699998753    110 0     0 0          023579999999996654 3211  14689999999999999


Q ss_pred             EEEEcCCCCc
Q 021361          226 ILINIGRGAH  235 (313)
Q Consensus       226 ~~in~~rg~~  235 (313)
                      ++.-.|....
T Consensus       322 IIFaLSNPtp  331 (487)
T 3nv9_A          322 IVFCCANPVP  331 (487)
T ss_dssp             EEEECCSSSC
T ss_pred             EEEECCCCCc
Confidence            9998886654

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=95.94  E-value=0.007  Score=58.10  Aligned_cols=109  Identities=9%  Similarity=0.092  Sum_probs=69.7

Q ss_pred             CEEEEEcCChh-HHHHHHHHHh----c-CCcEEEECCCC--cccc---------------c--ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGLGRI-GTAIAKRVEA----F-GCPISYHSRSE--KSDA---------------N--YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~G~i-G~~~a~~l~~----~-g~~V~~~~~~~--~~~~---------------~--~~~~~~l~~l~~~aDvv  199 (313)
                      .+|+|||.|.+ |..++..|..    + +.+|..||+..  +...               .  .....++.+.++.||+|
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~V   87 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   87 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCEE
Confidence            58999999999 8887766654    2 55799999987  4210               0  11235788999999999


Q ss_pred             EEecCCChH---hh--------h--------------------ccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361          200 IVACSLTEE---TH--------H--------------------IVN--RKVIDALGPSGILINIGRGAHIDEPELVSALL  246 (313)
Q Consensus       200 ~l~~p~~~~---t~--------~--------------------~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~al~  246 (313)
                      ++++|....   ++        +                    ++.  .+.+....|+++++|++-.-=+-..++.+...
T Consensus        88 Vitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~p  167 (450)
T 1s6y_A           88 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTK  167 (450)
T ss_dssp             EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHCC
T ss_pred             EEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCC
Confidence            999986331   11        0                    110  12344567899999987655444455555432


Q ss_pred             hCCceEE
Q 021361          247 EGRLAGA  253 (313)
Q Consensus       247 ~g~~~ga  253 (313)
                      ..++.|.
T Consensus       168 ~~rViG~  174 (450)
T 1s6y_A          168 QEKVVGL  174 (450)
T ss_dssp             CCCEEEC
T ss_pred             CCCEEEe
Confidence            3355554

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.93  E-value=0.029  Score=51.89  Aligned_cols=85  Identities=15%  Similarity=0.176  Sum_probs=58.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc---c----CCHHHHHh-----hCCeeEEecC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY---Y----TNIIDLAS-----NCQILIVACS  204 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~---~----~~l~~l~~-----~aDvv~l~~p  204 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..   .    .++.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            47899999999999999999999999 799998876542     12111   0    13444333     3788887775


Q ss_pred             CChHhhhccCHHHHhhcCCC-cEEEEcCC
Q 021361          205 LTEETHHIVNRKVIDALGPS-GILINIGR  232 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~g-a~~in~~r  232 (313)
                      ..+.     -...++.++++ ..++.++-
T Consensus       270 ~~~~-----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NVKV-----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             cHHH-----HHHHHHhhccCCcEEEEEec
Confidence            3222     13456778888 88888764

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.92  E-value=0.035  Score=51.44  Aligned_cols=85  Identities=13%  Similarity=0.157  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc---c----CCHHHHHh-----hCCeeEEecC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY---Y----TNIIDLAS-----NCQILIVACS  204 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~---~----~~l~~l~~-----~aDvv~l~~p  204 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..   .    .++.+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            47899999999999999999999999 799998876542     12211   0    12333332     3788887765


Q ss_pred             CChHhhhccCHHHHhhcCCC-cEEEEcCC
Q 021361          205 LTEETHHIVNRKVIDALGPS-GILINIGR  232 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~g-a~~in~~r  232 (313)
                      ..+.     -...++.++++ ..++.+|-
T Consensus       275 ~~~~-----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TAQT-----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECCC
T ss_pred             CHHH-----HHHHHHHhhcCCCEEEEECC
Confidence            3111     12456778887 77777764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.90  E-value=0.021  Score=51.48  Aligned_cols=105  Identities=10%  Similarity=0.088  Sum_probs=73.6

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc--cccccccCCHHHHHhhCCeeEEecCCCh----------Hh
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS--DANYKYYTNIIDLASNCQILIVACSLTE----------ET  209 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~~~~l~~l~~~aDvv~l~~p~~~----------~t  209 (313)
                      +.|.+|.|+|........++.|...|++|.+.......  ..+.....++.+.++++|+|+...|...          .+
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence            67889999999999999999999999999876432211  1233334456777889999887433221          12


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ...++++.++.++++.+++ ++    +|..++.+++.+.++.
T Consensus        85 ~~~~~~~~l~~~~~l~~i~-~g----~~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           85 EVVLKQDHLDRTPAHCVIF-SG----ISNAYLENIAAQAKRK  121 (300)
T ss_dssp             CEECCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHTTCC
T ss_pred             CccchHHHHhhcCCCCEEE-Ee----cCCHHHHHHHHHCCCE
Confidence            2237888999999988877 33    3677766777777666

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.90  E-value=0.019  Score=48.55  Aligned_cols=87  Identities=16%  Similarity=0.167  Sum_probs=57.3

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc-----ccc-----cc-CCHHHHHhhCCeeEEecCCC--h---H
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYK-----YY-TNIIDLASNCQILIVACSLT--E---E  208 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~-----~~-~~l~~l~~~aDvv~l~~p~~--~---~  208 (313)
                      +|.|.|. |.||+.+++.|...|++|.+.+|+.....     +..     .. .+. +.+..+|+|+.+....  +   .
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~~   80 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSVPWGSGRGY   80 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCCCTTSSCTH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccH-hhcccCCEEEECCccCCCcchhh
Confidence            6899997 99999999999999999999999864321     111     11 112 7788999999888653  1   1


Q ss_pred             hhhccCHHHHhhcCC-CcEEEEcCCC
Q 021361          209 THHIVNRKVIDALGP-SGILINIGRG  233 (313)
Q Consensus       209 t~~~i~~~~l~~mk~-ga~~in~~rg  233 (313)
                      ..-......++.|+. |..||++|..
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           81 LHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            110112345555543 4678888653

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.87  E-value=0.017  Score=52.14  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=45.8

Q ss_pred             CEEEEEc-CChhHHHHHHHHHh-cCCcEE-EECCCCcc-------------cccccccCCHHHHHhhCCeeEEecC
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEA-FGCPIS-YHSRSEKS-------------DANYKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~-------------~~~~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .+|+|+| +|.||+.+++.+.. -++++. +++++...             ..++..+.++++++.++|+|+-..+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~   97 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ   97 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC
Confidence            4899999 99999999999874 578854 56876422             1234456799999999999987663

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.85  E-value=0.0064  Score=56.06  Aligned_cols=99  Identities=18%  Similarity=0.145  Sum_probs=61.9

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc---------CCcE-EEECCCCccccc---ccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF---------GCPI-SYHSRSEKSDAN---YKYYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~---------g~~V-~~~~~~~~~~~~---~~~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      -+|||||+|.||+.+++.+...         +++| .++|++..+..+   ...+.++++++ +.|+|+.++|.......
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~~   82 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVEAPLR   82 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcHHHHH
Confidence            3799999999999999998765         4565 467776543322   12356788888 99999999986532221


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCc-cCHHHHHHHHHhC
Q 021361          212 IVNRKVIDALGPSGILINIGRGAH-IDEPELVSALLEG  248 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~-vd~~al~~al~~g  248 (313)
                      .    ..+.|+.|.-+|...-..+ ...+.|.++.++.
T Consensus        83 ~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           83 L----VLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             H----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             H----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            1    1233455554444222212 3456676666665

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.85  E-value=0.023  Score=52.24  Aligned_cols=86  Identities=19%  Similarity=0.220  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc---c---CC-HHHH---H-----hhCCeeEEe
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY---Y---TN-IIDL---A-----SNCQILIVA  202 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~---~---~~-l~~l---~-----~~aDvv~l~  202 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+++.++.     .++..   .   .+ .+++   .     ...|+|+-+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            47899999999999999999999999998888776431     12211   1   11 2222   2     248999988


Q ss_pred             cCCChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          203 CSLTEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       203 ~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      +.....     -...++.++++..++.+|.+
T Consensus       248 ~g~~~~-----~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          248 SGNEKC-----ITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCHHH-----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCHHH-----HHHHHHHHhcCCEEEEEecC
Confidence            764222     13457788999999998754

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.83  E-value=0.026  Score=52.54  Aligned_cols=83  Identities=11%  Similarity=0.180  Sum_probs=53.6

Q ss_pred             CCCEEEEEc-CChhHHHHHHHHHhcC-CcEEEECCCCccc----------ccc---c-ccCCHHHHHhhCCeeEEecCCC
Q 021361          143 SGKSVGIVG-LGRIGTAIAKRVEAFG-CPISYHSRSEKSD----------ANY---K-YYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgiiG-~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~----------~~~---~-~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ...+|||+| +|.+|+.+++.|.... +++.+........          .+.   . ...+ ++.++++|+|++|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346899999 9999999999998765 4766654432211          000   0 0112 44567899999999864


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      .+.      +.....+.|+.+|+.+.
T Consensus        94 ~s~------~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           94 TTQ------EIIKELPTALKIVDLSA  113 (359)
T ss_dssp             THH------HHHHTSCTTCEEEECSS
T ss_pred             hHH------HHHHHHhCCCEEEECCc
Confidence            332      22222367889999875

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.83  E-value=0.012  Score=53.91  Aligned_cols=85  Identities=27%  Similarity=0.277  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc----ccc-----cCCHHHHHh-----hCCeeEEecCCCh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN----YKY-----YTNIIDLAS-----NCQILIVACSLTE  207 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~----~~~-----~~~l~~l~~-----~aDvv~l~~p~~~  207 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++...    ...     ..++.+.+.     ..|+|+-++...+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  243 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA  243 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            68899999999999999999999999 89999987543211    110     123333332     4788887775322


Q ss_pred             HhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          208 ETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       208 ~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ..     ...++.|+++..++.+|.
T Consensus       244 ~~-----~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          244 AI-----HQGLMALIPGGEARILGI  263 (343)
T ss_dssp             HH-----HHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHhcCCEEEEEec
Confidence            21     345677788888888764

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.016  Score=53.25  Aligned_cols=86  Identities=15%  Similarity=0.188  Sum_probs=60.1

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc------cCCHHHHHh-----hCCeeEEecCC
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY------YTNIIDLAS-----NCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~------~~~l~~l~~-----~aDvv~l~~p~  205 (313)
                      .|++|.|+|. |.+|..+++.++..|++|++.+++.+..     .+...      ..++.+.+.     ..|+|+.++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            4789999999 8999999999999999999998876432     11110      124444443     37888887753


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      .+..     ...++.|+++..+|+++..
T Consensus       249 ~~~~-----~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          249 EAAI-----EASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HHHH-----HHHTTSEEEEEEEEECCCC
T ss_pred             HHHH-----HHHHHHHhcCCEEEEEeCC
Confidence            2221     3456778888888888753

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.80  E-value=0.0078  Score=55.57  Aligned_cols=63  Identities=16%  Similarity=0.173  Sum_probs=43.4

Q ss_pred             EEEEEcCChhHHHHHHHHHh-cCCcEEE-ECCCCccc---cc---------------------ccccCCHHHHHhhCCee
Q 021361          146 SVGIVGLGRIGTAIAKRVEA-FGCPISY-HSRSEKSD---AN---------------------YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~-~g~~V~~-~~~~~~~~---~~---------------------~~~~~~l~~l~~~aDvv  199 (313)
                      +|||+|+|.||+.+++.|.. -++++.+ .++.+...   .+                     .....+.++++.++|+|
T Consensus         3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV   82 (337)
T 1cf2_P            3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV   82 (337)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred             EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEE
Confidence            79999999999999999986 4677654 45442210   00                     00012567788899999


Q ss_pred             EEecCCChH
Q 021361          200 IVACSLTEE  208 (313)
Q Consensus       200 ~l~~p~~~~  208 (313)
                      +.|+|....
T Consensus        83 ~~atp~~~~   91 (337)
T 1cf2_P           83 IDCTPEGIG   91 (337)
T ss_dssp             EECCSTTHH
T ss_pred             EECCCchhh
Confidence            999986543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.80  E-value=0.035  Score=51.57  Aligned_cols=85  Identities=19%  Similarity=0.224  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc-------cCCHHHHHh-----hCCeeEEecC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY-------YTNIIDLAS-----NCQILIVACS  204 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~-------~~~l~~l~~-----~aDvv~l~~p  204 (313)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++++++.     .++..       ..++.+.+.     ..|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            57899999999999999999999999 799999877542     12211       123333332     3787777765


Q ss_pred             CChHhhhccCHHHHhhcCCC-cEEEEcCC
Q 021361          205 LTEETHHIVNRKVIDALGPS-GILINIGR  232 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~g-a~~in~~r  232 (313)
                      ..+.     -...++.++++ ..++.+|-
T Consensus       273 ~~~~-----~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          273 NVSV-----MRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhccCCEEEEEcc
Confidence            3211     12456667775 77777663

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.79  E-value=0.03  Score=49.80  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=30.9

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            468999996 9999999999999999999999874

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.78  E-value=0.016  Score=52.32  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE  177 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~  177 (313)
                      ..|++++|.|||.|.+|..+++.|...|. ++..+|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            57999999999999999999999999997 578888654

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.76  E-value=0.013  Score=54.66  Aligned_cols=138  Identities=12%  Similarity=0.135  Sum_probs=81.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh--c
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA--L  221 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~--m  221 (313)
                      -.++-|+|.|.+|+.+++.++.+|++|+++|+++.......        +..+|-++..-|          .+.+..  +
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~~~~--------fp~a~~v~~~~p----------~~~~~~~~~  260 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCEKHF--------FPDADEIIVDFP----------ADFLRKFLI  260 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGCGGG--------CTTCSEEEESCH----------HHHHHHSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcccccccc--------CCCceEEecCCH----------HHHHhhcCC
Confidence            45899999999999999999999999999998765322111        224454443222          112222  5


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCC---CCcEEEcC---CCCCCcHHHHHHHHHHH
Q 021361          222 GPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLG---LNNVVLLP---HVGSDTEETSKAMADLV  295 (313)
Q Consensus       222 k~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~---~pnvi~TP---Hia~~t~~~~~~~~~~~  295 (313)
                      .+++.+|=+.++.-.|...|..+|++. ..+.++=-  +.- ....|++   .+.-+-+|   -|++-|.+   ++.--+
T Consensus       261 ~~~t~vvv~TH~h~~D~~~L~~aL~~~-~~YiG~iG--Sr~-R~~rl~~~g~~~~ri~~PIGL~Iga~tP~---EIAvSI  333 (362)
T 3on5_A          261 RPDDFVLIMTHHFQKDQEILHFLLEKE-LRYIGILG--SKE-RTRRLLQNRKPPDHLYSPVGLSIDAQGPE---EIAISI  333 (362)
T ss_dssp             CTTCEEEECCSCHHHHHHHHHHHSSSC-CSEEEESS--CHH-HHHHHHTSCCCCTTEESSCSCCSCCCSHH---HHHHHH
T ss_pred             CCCeEEEEEeCCchhhHHHHHHHhcCC-CCEEEEeC--CHH-HHHHHHhcCCcHhheECCCCCCCCCCCHH---HHHHHH
Confidence            667777777777777777777777663 33333210  000 0000110   01125566   57788875   445555


Q ss_pred             HHHHHHHHcCC
Q 021361          296 IENLVAHFSNK  306 (313)
Q Consensus       296 ~~ni~~~~~g~  306 (313)
                      +..|.+..+|+
T Consensus       334 ~AEiia~~~~~  344 (362)
T 3on5_A          334 VAQLIQLIRSR  344 (362)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHhCC
Confidence            55666666655

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.75  E-value=0.049  Score=51.65  Aligned_cols=105  Identities=14%  Similarity=0.202  Sum_probs=71.1

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEE-EECCCCc--ccc--------------c-cc-ccCCHHHHH-hhCCe
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSEK--SDA--------------N-YK-YYTNIIDLA-SNCQI  198 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~-~~~~~~~--~~~--------------~-~~-~~~~l~~l~-~~aDv  198 (313)
                      |.+|+|++|.|.|+|++|+.+|+.|...|++|+ +.|.+..  ...              + .. +..+.++++ ..||+
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV  292 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV  292 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence            456899999999999999999999999999987 4454211  000              0 00 001223333 37998


Q ss_pred             eEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          199 LIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       199 v~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ++-|..     .+.|+.+..+.++ =.+++..+-+++- .++- +.|.+..+.
T Consensus       293 liP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~t-~~A~-~~L~~~Gi~  337 (419)
T 3aoe_E          293 LVLAAR-----EGALDGDRARQVQ-AQAVVEVANFGLN-PEAE-AYLLGKGAL  337 (419)
T ss_dssp             EEECSC-----TTCBCHHHHTTCC-CSEEEECSTTCBC-HHHH-HHHHHHTCE
T ss_pred             EEeccc-----ccccccchHhhCC-ceEEEECCCCcCC-HHHH-HHHHHCCCE
Confidence            887653     5668888888884 4588888888864 4444 666666665

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=95.75  E-value=0.072  Score=49.45  Aligned_cols=92  Identities=13%  Similarity=0.188  Sum_probs=66.8

Q ss_pred             cccCCCEEEEEcC--ChhHHHHHHHHHhcCCcEEEECCCCccc--------------cc--ccccCCHHHHHhhCCeeEE
Q 021361          140 SKFSGKSVGIVGL--GRIGTAIAKRVEAFGCPISYHSRSEKSD--------------AN--YKYYTNIIDLASNCQILIV  201 (313)
Q Consensus       140 ~~l~g~~vgiiG~--G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~~l~~~aDvv~l  201 (313)
                      ..+.|++|+++|=  +++.++.+..+..+|++|.++.|..-..              .+  .....++++.++++|+|..
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt  256 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYT  256 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEE
Confidence            4588999999995  4799999999999999999988754211              01  2345789999999999875


Q ss_pred             ecCC----ChH---------hhhccCHHHHhhc-CCCcEEEEcC
Q 021361          202 ACSL----TEE---------THHIVNRKVIDAL-GPSGILINIG  231 (313)
Q Consensus       202 ~~p~----~~~---------t~~~i~~~~l~~m-k~ga~~in~~  231 (313)
                      -.=.    .++         ...-++.+.++.+ ||+++|..+.
T Consensus       257 ~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          257 DVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             CCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             EEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            2211    111         1234688888764 7899999875

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.74  E-value=0.028  Score=51.89  Aligned_cols=37  Identities=19%  Similarity=0.446  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~  176 (313)
                      ..|++++|.|||.|.+|..+|+.|...|. ++..+|+.
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            46899999999999999999999999998 57888764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.74  E-value=0.039  Score=50.82  Aligned_cols=86  Identities=19%  Similarity=0.124  Sum_probs=58.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccccc----c-cc--c----CCHHHH---H------hhCCeeEE
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDAN----Y-KY--Y----TNIIDL---A------SNCQILIV  201 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~----~-~~--~----~~l~~l---~------~~aDvv~l  201 (313)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.++++++...    . ..  +    .+.+++   +      ...|+|+-
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence            478999999999999999999999997 8888876643210    1 00  0    011222   2      14799998


Q ss_pred             ecCCChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          202 ACSLTEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       202 ~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      ++.....     -...++.++++..++.+|-.
T Consensus       259 ~~g~~~~-----~~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          259 CTGVESS-----IAAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             CSCCHHH-----HHHHHHHSCTTCEEEECCCC
T ss_pred             CCCChHH-----HHHHHHHhcCCCEEEEEccC
Confidence            8763211     13466789999999998743

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.74  E-value=0.028  Score=49.97  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=30.9

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      +++|.|.|. |.+|+.+++.|...|++|.+.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            568999996 9999999999999999999998875

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.72  E-value=0.014  Score=53.34  Aligned_cols=106  Identities=12%  Similarity=0.110  Sum_probs=68.1

Q ss_pred             CCEEEEEcCChhHHH-HHHHHHhcCCcEEEECCCCccc-------cccccc--CCHHHHH-hhCCeeEEecCC---ChHh
Q 021361          144 GKSVGIVGLGRIGTA-IAKRVEAFGCPISYHSRSEKSD-------ANYKYY--TNIIDLA-SNCQILIVACSL---TEET  209 (313)
Q Consensus       144 g~~vgiiG~G~iG~~-~a~~l~~~g~~V~~~~~~~~~~-------~~~~~~--~~l~~l~-~~aDvv~l~~p~---~~~t  209 (313)
                      .++|.|||.|.+|.+ +|+.|+..|++|.++|......       .+....  .+.+++. .++|+|+.+-..   +|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            478999999999995 9999999999999999865321       122221  2445555 579999886333   3332


Q ss_pred             h-------hccCH-HHHhh--cCCC-cEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          210 H-------HIVNR-KVIDA--LGPS-GILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       210 ~-------~~i~~-~~l~~--mk~g-a~~in~~rg~~vd~~al~~al~~g~  249 (313)
                      .       .++.+ +.|..  ++.. .+-|--+.|+.--..-+...|+...
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            1       13333 33443  3333 3445555788777777778887643

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.71  E-value=0.0058  Score=51.29  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=32.4

Q ss_pred             CCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|++|.|+| .|.||..+++.++..|++|++.+++.+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~   74 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA   74 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            578999999 699999999999999999999888654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.69  E-value=0.037  Score=50.94  Aligned_cols=86  Identities=19%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc---cC--CHHH----HH----hhCCeeEEec
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY---YT--NIID----LA----SNCQILIVAC  203 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~---~~--~l~~----l~----~~aDvv~l~~  203 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++.     .++..   ..  +.++    +.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            47899999999999999999999999 899998776532     22211   11  1112    22    2489999888


Q ss_pred             CCChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          204 SLTEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       204 p~~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      ......     ...++.++++..++.+|-+
T Consensus       251 g~~~~~-----~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          251 GAEASI-----QAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             CCHHHH-----HHHHHHSCTTCEEEECSCC
T ss_pred             CChHHH-----HHHHHHhcCCCEEEEEecC
Confidence            642221     3457789999999998853

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.68  E-value=0.016  Score=54.65  Aligned_cols=65  Identities=17%  Similarity=0.442  Sum_probs=45.2

Q ss_pred             cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----c--cc---cc---CCHHHHHhhCCeeEE
Q 021361          136 FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----N--YK---YY---TNIIDLASNCQILIV  201 (313)
Q Consensus       136 ~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----~--~~---~~---~~l~~l~~~aDvv~l  201 (313)
                      |.++..+.+++|+|+|-|..|+.+++.++.+|++|.++| ......    .  ..   .+   ..+.++++++|+|+.
T Consensus        16 ~~~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           16 YFQGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             -----CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             eEeccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            445666789999999999999999999999999998888 543211    1  01   01   235667888998764

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.64  E-value=0.009  Score=55.59  Aligned_cols=86  Identities=20%  Similarity=0.282  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc---cCCH---HHHHhhCCeeEEecCCChHhhh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY---YTNI---IDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~---~~~l---~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++.     .++..   ..+.   +++....|+|+-++.....   
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~---  270 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  270 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH---
Confidence            47899999999999999999999999999988876542     12211   1111   1122357888877754211   


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCC
Q 021361          212 IVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg  233 (313)
                        -...++.|+++..++.+|..
T Consensus       271 --~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          271 --LDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             --HHHHHTTEEEEEEEEECCCC
T ss_pred             --HHHHHHHhccCCEEEEeccC
Confidence              13456778888888887743

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=95.64  E-value=0.048  Score=49.91  Aligned_cols=89  Identities=4%  Similarity=-0.033  Sum_probs=66.8

Q ss_pred             ccCCCEEEE-----EcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccccCCHHHHHhhCCeeEEecCCC----
Q 021361          141 KFSGKSVGI-----VGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKYYTNIIDLASNCQILIVACSLT----  206 (313)
Q Consensus       141 ~l~g~~vgi-----iG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~~l~~~aDvv~l~~p~~----  206 (313)
                      .+. .+|++     +|=+++.++++..+..+|++|.+..|..-...     ......++++.++++|+|..-.=..    
T Consensus       166 ~l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~  244 (324)
T 1js1_X          166 RPK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGD  244 (324)
T ss_dssp             SCE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTT
T ss_pred             Cee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCc
Confidence            366 89999     99999999999999999999999888653322     2445689999999999998832210    


Q ss_pred             -------hHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          207 -------EETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       207 -------~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                             ......++.+.++.+| +++|..+.
T Consensus       245 ~~~~~~~r~~~y~vt~e~l~~a~-~ai~MHcL  275 (324)
T 1js1_X          245 NYGQILSTDRNWTVGDRQMAVTN-NAYFMHCL  275 (324)
T ss_dssp             CTTCCCCCCTTSSBCHHHHTTSS-SCEEECCS
T ss_pred             cccchHHHhcCcccCHHHHHhcC-CcEEECCC
Confidence                   0112456777888787 88888776

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.63  E-value=0.01  Score=50.43  Aligned_cols=62  Identities=16%  Similarity=0.220  Sum_probs=47.1

Q ss_pred             EEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccccc---c-------cc-cCCHHHHHhhCCeeEEecCCCh
Q 021361          146 SVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDAN---Y-------KY-YTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~---~-------~~-~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      +|.|.| .|.||+.+++.|...|++|.+.+|+......   .       .. ..++.++++++|+|+.+.....
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~   75 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG   75 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence            688999 8999999999999999999999998754321   1       11 1235556788999998887543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.63  E-value=0.011  Score=54.68  Aligned_cols=88  Identities=25%  Similarity=0.307  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cccccc-----C-CHHHHH-hhCCeeEEecCCChHhh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYY-----T-NIIDLA-SNCQILIVACSLTEETH  210 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~-----~-~l~~l~-~~aDvv~l~~p~~~~t~  210 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+++.++.     .++...     . +..+.+ ...|+|+-++..++  .
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~  256 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D  256 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence            47899999999999999999999999999998876542     122111     1 222222 35788888776421  1


Q ss_pred             hccCHHHHhhcCCCcEEEEcCCC
Q 021361          211 HIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      ..+ ...++.++++..++.++..
T Consensus       257 ~~~-~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          257 IDF-NIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             CCT-TTGGGGEEEEEEEEECCCC
T ss_pred             HHH-HHHHHHhcCCCEEEEecCC
Confidence            112 2456778888888887653

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.62  E-value=0.0087  Score=51.23  Aligned_cols=91  Identities=14%  Similarity=0.083  Sum_probs=59.9

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHh---hCCeeEEecCCCh---------
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLAS---NCQILIVACSLTE---------  207 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~---~aDvv~l~~p~~~---------  207 (313)
                      .++||++.|.|. |.||+.+|+.|...|++|.+.+|+...  +.....+++++++   ..|+++.+.....         
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~--D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~   80 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGL--DISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVE   80 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTC--CTTCHHHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCccc--CCCCHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCC
Confidence            367899999997 689999999999999999999987541  1111223444444   5798888765331         


Q ss_pred             -H-hhhc----------cCHHHHhhcCCCcEEEEcCCC
Q 021361          208 -E-THHI----------VNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       208 -~-t~~~----------i~~~~l~~mk~ga~~in~~rg  233 (313)
                       + .+..          +.+..+..|+++..+||++..
T Consensus        81 ~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           81 VTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             HHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence             0 0001          123445667778889999853

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.61  E-value=0.036  Score=48.54  Aligned_cols=38  Identities=18%  Similarity=0.484  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcCC-h--hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-R--IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~--iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +++||++.|.|.+ .  ||+.+|+.|...|++|+..+|+.+
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~   44 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGER   44 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchH
Confidence            5789999999974 4  999999999999999998887753

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.60  E-value=0.012  Score=52.01  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEc---CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVG---LGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG---~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.||++.|.|   -|.||+.+|+.|...|++|++.+|+..
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~   44 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   44 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChH
Confidence            47899999999   489999999999999999999888763

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.59  E-value=0.0078  Score=53.91  Aligned_cols=95  Identities=21%  Similarity=0.224  Sum_probs=61.6

Q ss_pred             cccccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccc------cc-------c--ccCCHHHH-------Hh
Q 021361          138 LGSKFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDA------NY-------K--YYTNIIDL-------AS  194 (313)
Q Consensus       138 ~~~~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~------~~-------~--~~~~l~~l-------~~  194 (313)
                      +..+|.||++-|-|.+ .||+++|+.|...|++|.+.+|+.+...      +.       .  ...+.+++       +.
T Consensus        23 Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G  102 (273)
T 4fgs_A           23 MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAG  102 (273)
T ss_dssp             --CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             hcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3456999999999975 5999999999999999999999764310      10       0  01122222       33


Q ss_pred             hCCeeEEecCCCh---------H-hhhcc----------CHHHHhhcCCCcEEEEcCC
Q 021361          195 NCQILIVACSLTE---------E-THHIV----------NRKVIDALGPSGILINIGR  232 (313)
Q Consensus       195 ~aDvv~l~~p~~~---------~-t~~~i----------~~~~l~~mk~ga~~in~~r  232 (313)
                      +-|+++.+.-...         + -+.++          .+..+..|+++..+||++.
T Consensus       103 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS  160 (273)
T 4fgs_A          103 RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS  160 (273)
T ss_dssp             CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence            5688888764321         1 11111          2456677988888999874

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.57  E-value=0.056  Score=52.17  Aligned_cols=96  Identities=9%  Similarity=0.159  Sum_probs=68.6

Q ss_pred             cccCCCEEEEEcCCh----------hHHHHHHHHHhcCCcEEEECCCCccc----c------------cccccCCHHHHH
Q 021361          140 SKFSGKSVGIVGLGR----------IGTAIAKRVEAFGCPISYHSRSEKSD----A------------NYKYYTNIIDLA  193 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~----------iG~~~a~~l~~~g~~V~~~~~~~~~~----~------------~~~~~~~l~~l~  193 (313)
                      ..+.|++|+|+|+--          -...+++.|...|.+|.+|||.....    .            ......++.+.+
T Consensus       324 ~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (478)
T 2y0c_A          324 EDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAA  403 (478)
T ss_dssp             SCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHT
T ss_pred             ccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHH
Confidence            357899999999853          66789999999999999999976322    0            123346788999


Q ss_pred             hhCCeeEEecCCChHhhhccCHHHH-hhcCCCcEEEEcCCCCccCHHH
Q 021361          194 SNCQILIVACSLTEETHHIVNRKVI-DALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       194 ~~aDvv~l~~p~~~~t~~~i~~~~l-~~mk~ga~~in~~rg~~vd~~a  240 (313)
                      +++|+|++++... +.+ -++-+.+ +.|+ ..+++|+ |+ ++|.+.
T Consensus       404 ~~ad~~vi~t~~~-~f~-~~~~~~~~~~~~-~~~i~D~-r~-~~~~~~  446 (478)
T 2y0c_A          404 RDADALVIVTEWK-IFK-SPDFVALGRLWK-TPVIFDG-RN-LYEPET  446 (478)
T ss_dssp             TTCSEEEECSCCG-GGG-SCCHHHHHTTCS-SCEEEES-SC-CSCHHH
T ss_pred             hCCCEEEEecCCh-Hhh-ccCHHHHHhhcC-CCEEEEC-CC-CCCHHH
Confidence            9999999999864 222 2354444 4565 4788886 54 356543

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=95.56  E-value=0.037  Score=51.40  Aligned_cols=64  Identities=16%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             CEEEEEc-CChhHHH-HH----HHHHhcC-CcE----------EEECCCCccc------ccc-cccCCHHHHHhh--CCe
Q 021361          145 KSVGIVG-LGRIGTA-IA----KRVEAFG-CPI----------SYHSRSEKSD------ANY-KYYTNIIDLASN--CQI  198 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~-~a----~~l~~~g-~~V----------~~~~~~~~~~------~~~-~~~~~l~~l~~~--aDv  198 (313)
                      .+||||| +|.||+. .+    +.++..+ ..+          .++|++++..      .+. ..+.++++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4799999 9999998 66    6666554 222          3888887542      233 346899999976  899


Q ss_pred             eEEecCCChH
Q 021361          199 LIVACSLTEE  208 (313)
Q Consensus       199 v~l~~p~~~~  208 (313)
                      |++++|...+
T Consensus        87 V~i~tp~~~h   96 (383)
T 3oqb_A           87 FFDAATTQAR   96 (383)
T ss_dssp             EEECSCSSSS
T ss_pred             EEECCCchHH
Confidence            9999996443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.56  E-value=0.011  Score=54.17  Aligned_cols=85  Identities=15%  Similarity=0.176  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc-----cCCHHHHHh----hCCeeEEecCCChH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY-----YTNIIDLAS----NCQILIVACSLTEE  208 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~-----~~~l~~l~~----~aDvv~l~~p~~~~  208 (313)
                      .|.+|.|+|.|.+|...++.++..|++|++.++++++.     .++..     ..++.+.+.    ..|+++.+....+.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            47899999999999999999999999999998876532     12111     123333332    47888776643221


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCC
Q 021361          209 THHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                           -...++.++++..++.+|-
T Consensus       246 -----~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          246 -----FSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             -----HHHHHHHEEEEEEEEECSC
T ss_pred             -----HHHHHHHhccCCEEEEeCC
Confidence                 1245677888888888764

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.53  E-value=0.005  Score=57.00  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=46.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc--------CCcE-EEECCCCccc------cc-ccccCCHHHHHh--hCCeeEEecCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF--------GCPI-SYHSRSEKSD------AN-YKYYTNIIDLAS--NCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~--------g~~V-~~~~~~~~~~------~~-~~~~~~l~~l~~--~aDvv~l~~p~~  206 (313)
                      .+|||||+|.||+.-++.++..        +.+| .++|++++..      .+ ...+.+++++++  +.|+|++++|..
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            5899999999999888777643        2354 4678876532      12 234689999996  489999999975


Q ss_pred             hH
Q 021361          207 EE  208 (313)
Q Consensus       207 ~~  208 (313)
                      -+
T Consensus        87 ~H   88 (390)
T 4h3v_A           87 SH   88 (390)
T ss_dssp             GH
T ss_pred             HH
Confidence            54

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.52  E-value=0.023  Score=53.41  Aligned_cols=86  Identities=17%  Similarity=0.271  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc-----cCCHHHHHh------hCCeeEEecCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY-----YTNIIDLAS------NCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~~l~~------~aDvv~l~~p~  205 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..     ..++.+.+.      ..|+|+-++..
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~  292 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV  292 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 799998776532     12211     123333222      48999888864


Q ss_pred             ChHhhhccCHHHHhhc----CCCcEEEEcCC
Q 021361          206 TEETHHIVNRKVIDAL----GPSGILINIGR  232 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~m----k~ga~~in~~r  232 (313)
                      ...+.    ...++.+    +++..++.+|-
T Consensus       293 ~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          293 PQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             HHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             cHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            32222    2233444    89999998874

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=95.48  E-value=0.0078  Score=51.86  Aligned_cols=63  Identities=21%  Similarity=0.161  Sum_probs=44.8

Q ss_pred             CCEEEEEcCChhHHHHHHHH--HhcCCcEE-EECCCCc-cc-----cccc--ccCCHHHHHhh--CCeeEEecCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRV--EAFGCPIS-YHSRSEK-SD-----ANYK--YYTNIIDLASN--CQILIVACSLT  206 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l--~~~g~~V~-~~~~~~~-~~-----~~~~--~~~~l~~l~~~--aDvv~l~~p~~  206 (313)
                      .++++|+|.|++|+++++.+  ...|+++. ++|..+. ..     .+..  ...++++++++  .|.+++++|..
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            46899999999999999973  45678764 5676655 21     2222  23577788764  89999999864

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=95.47  E-value=0.038  Score=50.22  Aligned_cols=88  Identities=18%  Similarity=0.211  Sum_probs=63.5

Q ss_pred             cCCCEEEEEcC---ChhHHHHHHHHHhc-CCcEEEECCCCccc----------ccc--cccCCHHHHHhhCCeeEEecC-
Q 021361          142 FSGKSVGIVGL---GRIGTAIAKRVEAF-GCPISYHSRSEKSD----------ANY--KYYTNIIDLASNCQILIVACS-  204 (313)
Q Consensus       142 l~g~~vgiiG~---G~iG~~~a~~l~~~-g~~V~~~~~~~~~~----------~~~--~~~~~l~~l~~~aDvv~l~~p-  204 (313)
                      +.|++|++||=   |++.++++..+..+ |++|.+..|..-..          .+.  ..+.++++.++++|+|..-.- 
T Consensus       149 l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~q  228 (306)
T 4ekn_B          149 IDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQ  228 (306)
T ss_dssp             STTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCCC
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCcc
Confidence            78999999998   58999999999999 99999888754221          122  235789999999999886421 


Q ss_pred             -----CChHh-----hhccCHHHHhhcCCCcEEEEcC
Q 021361          205 -----LTEET-----HHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       205 -----~~~~t-----~~~i~~~~l~~mk~ga~~in~~  231 (313)
                           ...+-     ..-++.+.++.  ++++|..+.
T Consensus       229 ~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~l  263 (306)
T 4ekn_B          229 KERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPL  263 (306)
T ss_dssp             GGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCS
T ss_pred             cccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCC
Confidence                 10111     13467777775  778888775

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.47  E-value=0.08  Score=50.76  Aligned_cols=42  Identities=14%  Similarity=0.199  Sum_probs=37.5

Q ss_pred             cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          136 FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       136 ~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      +|..-.++|++|.|||.|.+|.+.++.|...|++|.++++..
T Consensus         4 ~P~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A            4 LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             EEEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             eeeEEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            345667899999999999999999999999999999999753

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.47  E-value=0.045  Score=49.06  Aligned_cols=60  Identities=22%  Similarity=0.328  Sum_probs=43.0

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc---------ccccc-------cCCHHHHHhhCCeeEEecC
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD---------ANYKY-------YTNIIDLASNCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~~~~~-------~~~l~~l~~~aDvv~l~~p  204 (313)
                      ++|.|.|. |.+|+.+++.|...|++|.+.+|+....         .+...       ..++.++++.+|+|+.+.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            57999995 9999999999999999999998876411         11111       1235556677777776654

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.45  E-value=0.043  Score=49.94  Aligned_cols=93  Identities=13%  Similarity=0.263  Sum_probs=61.4

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcC--CcEEEECCCCccc------cc-----ccc---cCCHHHHHhhCCeeEEecCCChH
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFG--CPISYHSRSEKSD------AN-----YKY---YTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g--~~V~~~~~~~~~~------~~-----~~~---~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      +|+|||. |.+|..++..|...|  .+|..+|+.....      ..     ...   ..++++.++.||+|+++......
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~~   81 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCCC
Confidence            7999998 999999999998777  5789998876210      00     111   13678889999999998754321


Q ss_pred             ---hh-hcc--C----H---HHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          209 ---TH-HIV--N----R---KVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       209 ---t~-~~i--~----~---~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                         ++ .++  |    .   +.+....|+++++++  +.++|.-.
T Consensus        82 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~  124 (314)
T 1mld_A           82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI  124 (314)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence               11 111  1    1   122334588999997  56777654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.43  E-value=0.017  Score=49.71  Aligned_cols=92  Identities=16%  Similarity=0.203  Sum_probs=58.5

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccccc------cc--ccCCHHHHHh---------hCCeeEEec
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDAN------YK--YYTNIIDLAS---------NCQILIVAC  203 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~------~~--~~~~l~~l~~---------~aDvv~l~~  203 (313)
                      ++||++.|.|. |.||+.+++.|...|++|++.+|+......      ..  ...+++++++         ..|+|+.+.
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~A   80 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVA   80 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECC
Confidence            35789999985 789999999999999999999987654221      01  0122333333         679888876


Q ss_pred             CCC-------hHh----hhcc----------CHHHHhhcCCCcEEEEcCCC
Q 021361          204 SLT-------EET----HHIV----------NRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       204 p~~-------~~t----~~~i----------~~~~l~~mk~ga~~in~~rg  233 (313)
                      -..       +.+    ...+          .+..+..|+++..|||++..
T Consensus        81 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  131 (236)
T 1ooe_A           81 GGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA  131 (236)
T ss_dssp             CCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             cccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECch
Confidence            421       111    1111          13455667667789998864

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.42  E-value=0.014  Score=53.87  Aligned_cols=85  Identities=25%  Similarity=0.307  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc------cccccc---cCCHHHH---HhhCCeeEEecCCChHhh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS------DANYKY---YTNIIDL---ASNCQILIVACSLTEETH  210 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~------~~~~~~---~~~l~~l---~~~aDvv~l~~p~~~~t~  210 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+++.++      ..++..   ..+.+.+   ....|+|+-++.....  
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~--  257 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA--  257 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence            5889999999999999999999999999998887643      122221   1222222   2357888887764211  


Q ss_pred             hccCHHHHhhcCCCcEEEEcCC
Q 021361          211 HIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~r  232 (313)
                         -...++.++++..++.+|-
T Consensus       258 ---~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          258 ---LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             ---SHHHHTTEEEEEEEEECSC
T ss_pred             ---HHHHHHHhccCCEEEEeCC
Confidence               2346677889999988874

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.40  E-value=0.021  Score=49.79  Aligned_cols=93  Identities=16%  Similarity=0.189  Sum_probs=59.9

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccccc----cc--ccCCHHHHHhh-------CCeeEEecCCC-
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDAN----YK--YYTNIIDLASN-------CQILIVACSLT-  206 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~----~~--~~~~l~~l~~~-------aDvv~l~~p~~-  206 (313)
                      ..||++.|.|. |.||+.+|+.|...|++|++.+|+......    +.  ...++++++++       .|+|+.+.... 
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~~   99 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWS   99 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCCC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccCC
Confidence            45899999996 679999999999999999999988754322    11  11234445544       48888876421 


Q ss_pred             ------hHh----hhc----------cCHHHHhhcCCCcEEEEcCCCC
Q 021361          207 ------EET----HHI----------VNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       207 ------~~t----~~~----------i~~~~l~~mk~ga~~in~~rg~  234 (313)
                            +.+    ...          +.+..+..|+++..||+++...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A          100 GGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             CBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence                  111    111          1134556677778899988643

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.38  E-value=0.016  Score=52.71  Aligned_cols=94  Identities=17%  Similarity=0.243  Sum_probs=60.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC--CcEEEECCCCccccc--------------ccccCCHHHHHhhCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG--CPISYHSRSEKSDAN--------------YKYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~--------------~~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      .||+|||.|.+|..++..|...+  -+|..+|...++..+              .....+..+.++.||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            48999999999999999998766  479999987542111              01111335678999999998865322


Q ss_pred             ---h--------hhccC--HHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          209 ---T--------HHIVN--RKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       209 ---t--------~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                         +        ..++.  .+.+....|+++++++  ..++|.-.
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t  123 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVA--TNPVDVMT  123 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC--SSSHHHHH
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEe--cCchHHHH
Confidence               0        11111  1122334789999997  45555544

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.37  E-value=0.015  Score=54.03  Aligned_cols=85  Identities=16%  Similarity=0.309  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc-----cCCHHHHHhh--------CCeeEEec
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY-----YTNIIDLASN--------CQILIVAC  203 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~~l~~~--------aDvv~l~~  203 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .++..     ..++.+.+.+        .|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            47899999999999999999999999 788888876432     12211     1244444443        78888876


Q ss_pred             CCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          204 SLTEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       204 p~~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ... .+    -...++.++++..++.+|-
T Consensus       262 G~~-~~----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GVA-ET----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CCH-HH----HHHHHHHEEEEEEEEECSC
T ss_pred             CCH-HH----HHHHHHHhccCCEEEEEec
Confidence            532 21    1345677888888888874

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.37  E-value=0.058  Score=47.59  Aligned_cols=38  Identities=18%  Similarity=0.142  Sum_probs=33.9

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCC
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      ...++||++.|.|. |.||+.+|+.|...|++|++.+|+
T Consensus         5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            34689999999997 579999999999999999998876

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=95.37  E-value=0.036  Score=51.51  Aligned_cols=62  Identities=15%  Similarity=0.156  Sum_probs=40.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc--C--CcE-EEECCCCccc--c--cccccCCHHHHHhhC-------------------
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF--G--CPI-SYHSRSEKSD--A--NYKYYTNIIDLASNC-------------------  196 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~--g--~~V-~~~~~~~~~~--~--~~~~~~~l~~l~~~a-------------------  196 (313)
                      -+|||||+|.||+.+++.+...  |  ++| .++|+.....  .  +...+.+.++++++.                   
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~~~   84 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPK   84 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhccC
Confidence            3799999999999999999875  3  455 4456433211  1  222234566666543                   


Q ss_pred             -CeeEEecCCC
Q 021361          197 -QILIVACSLT  206 (313)
Q Consensus       197 -Dvv~l~~p~~  206 (313)
                       |+|+.|+|..
T Consensus        85 ~DvVV~~t~~~   95 (358)
T 1ebf_A           85 PVILVDNTSSA   95 (358)
T ss_dssp             CEEEEECSCCH
T ss_pred             CcEEEEcCCCh
Confidence             6888888754

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.36  E-value=0.027  Score=50.83  Aligned_cols=64  Identities=25%  Similarity=0.269  Sum_probs=45.5

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc-----------cccc-------cCCHHHHHhh--CCeeE
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA-----------NYKY-------YTNIIDLASN--CQILI  200 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----------~~~~-------~~~l~~l~~~--aDvv~  200 (313)
                      ++|++|.|.|. |.||+.+++.|...|++|.+.+|+.....           ....       ..++++++++  .|+|+
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            35789999998 99999999999999999999998764311           1111       1234556665  49888


Q ss_pred             EecCC
Q 021361          201 VACSL  205 (313)
Q Consensus       201 l~~p~  205 (313)
                      .+...
T Consensus        81 h~A~~   85 (345)
T 2z1m_A           81 NLAAQ   85 (345)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            77654

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.35  E-value=0.017  Score=52.66  Aligned_cols=61  Identities=21%  Similarity=0.240  Sum_probs=43.7

Q ss_pred             CEEEEEcCChhHHHHHHHHHh--cCCcE-EEECCCCcc-c------cccc-ccCCHHHHHh-----hCCeeEEecCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEA--FGCPI-SYHSRSEKS-D------ANYK-YYTNIIDLAS-----NCQILIVACSL  205 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~--~g~~V-~~~~~~~~~-~------~~~~-~~~~l~~l~~-----~aDvv~l~~p~  205 (313)
                      .+|||||+|.+|+.+++.+..  -++++ .++|+++++ .      .+.. ...+.+++++     +.|+|+.++|.
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~   81 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSA   81 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCCh
Confidence            489999999999999999954  45664 567877554 1      1222 2346777764     47999999984

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.35  E-value=0.057  Score=52.13  Aligned_cols=98  Identities=12%  Similarity=0.126  Sum_probs=69.8

Q ss_pred             ccCCCEEEEEcCC----------hhHHHHHHHHHhcCCcEEEECCCCccc-----c-----------cccccCCHHHHHh
Q 021361          141 KFSGKSVGIVGLG----------RIGTAIAKRVEAFGCPISYHSRSEKSD-----A-----------NYKYYTNIIDLAS  194 (313)
Q Consensus       141 ~l~g~~vgiiG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~-----------~~~~~~~l~~l~~  194 (313)
                      .++|++|+|+|+.          .-...+++.|...|.+|.+|||.....     .           ....+.++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            4789999999984          477889999999999999999975321     0           0122367788999


Q ss_pred             hCCeeEEecCCChHhhhccCHH-HHhhcCCCcEEEEcCCCCccCHHHHH
Q 021361          195 NCQILIVACSLTEETHHIVNRK-VIDALGPSGILINIGRGAHIDEPELV  242 (313)
Q Consensus       195 ~aDvv~l~~p~~~~t~~~i~~~-~l~~mk~ga~~in~~rg~~vd~~al~  242 (313)
                      ++|+|++++... +.+ -++-+ ..+.|+...+++|+ |+ ++|.+.+.
T Consensus       412 ~ad~~vi~t~~~-~f~-~~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~  456 (481)
T 2o3j_A          412 GAHAIVVLTEWD-EFV-ELNYSQIHNDMQHPAAIFDG-RL-ILDQKALR  456 (481)
T ss_dssp             TCSEEEECSCCG-GGT-TSCHHHHHHHSCSSCEEEES-SS-CSCHHHHH
T ss_pred             CCCEEEEcCCcH-Hhh-ccCHHHHHHhcCCCCEEEEC-CC-CCCHHHHH
Confidence            999999999764 222 24544 44567776688885 55 45665443

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.34  E-value=0.026  Score=55.83  Aligned_cols=73  Identities=21%  Similarity=0.359  Sum_probs=50.3

Q ss_pred             cEEEeCCC-CCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccc-cccCCCEEEEEcCChhHHHHHHHHHhcCC
Q 021361           91 VRVTNTPD-VLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELG-SKFSGKSVGIVGLGRIGTAIAKRVEAFGC  168 (313)
Q Consensus        91 I~v~n~~~-~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~-~~l~g~~vgiiG~G~iG~~~a~~l~~~g~  168 (313)
                      -+..+-.. ......||.+.-+-|-+.|-          .-|..    .| ..|++++|.|||.|.+|..+|+.|...|.
T Consensus       285 ~~~~~l~~~~dp~~la~~~~~Lnlklm~w----------Rllp~----~g~ekL~~arVLIVGaGGLGs~vA~~La~aGV  350 (615)
T 4gsl_A          285 PRVVDLSSLLDPLKIADQSVDLNLKLMKW----------RILPD----LNLDIIKNTKVLLLGAGTLGCYVSRALIAWGV  350 (615)
T ss_dssp             CEEEECHHHHCHHHHHHHHHHHHHHHHHH----------HTCTT----CCHHHHHTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             eeEEeccccCCHHHHHhhhhhhhhHHHHH----------hhcch----hhHHHHhCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            34444333 24556777777776655442          12221    12 36899999999999999999999999998


Q ss_pred             -cEEEECCCC
Q 021361          169 -PISYHSRSE  177 (313)
Q Consensus       169 -~V~~~~~~~  177 (313)
                       ++..+|...
T Consensus       351 G~ItLvD~D~  360 (615)
T 4gsl_A          351 RKITFVDNGT  360 (615)
T ss_dssp             CEEEEECCCB
T ss_pred             CEEEEEcCCC
Confidence             588888643

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.33  E-value=0.01  Score=53.30  Aligned_cols=83  Identities=16%  Similarity=0.175  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-----cccccc---C---CHHHHHhhCCeeEEecCCChHhh
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYY---T---NIIDLASNCQILIVACSLTEETH  210 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~---~---~l~~l~~~aDvv~l~~p~~~~t~  210 (313)
                      .|++|.|+|. |.+|..+++.++..|++|++.+++.++.     .+....   .   ++.+.+...|+++. +.. +   
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~---  199 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K---  199 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T---
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H---
Confidence            4789999998 9999999999999999999998876542     121111   1   11122245777776 543 1   


Q ss_pred             hccCHHHHhhcCCCcEEEEcCC
Q 021361          211 HIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       211 ~~i~~~~l~~mk~ga~~in~~r  232 (313)
                        .-...++.|+++..++.++.
T Consensus       200 --~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          200 --EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             --THHHHHTTEEEEEEEEEC--
T ss_pred             --HHHHHHHhhccCCEEEEEeC
Confidence              12345667777777777763

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=95.33  E-value=0.054  Score=51.37  Aligned_cols=105  Identities=15%  Similarity=0.224  Sum_probs=68.3

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEE-ECCCCc----------c------cccc------------cccCCH
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY-HSRSEK----------S------DANY------------KYYTNI  189 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~-~~~~~~----------~------~~~~------------~~~~~l  189 (313)
                      |.+++|++|.|.|+|++|+.+++.|...|++|++ .|.+..          .      ..+.            ....+.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            4468999999999999999999999999999874 444210          0      0000            111133


Q ss_pred             HHHHh-hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          190 IDLAS-NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       190 ~~l~~-~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ++++. .||+++-|.     +.+.|+.+..+.++ =.+++-.+-+++ ..++ .+.|.+..+.
T Consensus       285 ~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVV  339 (421)
T ss_dssp             TGGGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hhhhcCCccEEEecC-----cCCccchhhHHHcC-ceEEEecCCCcC-CHHH-HHHHHHCCCE
Confidence            44444 688877665     24567777777774 356677777775 4444 3667777666

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.33  E-value=0.016  Score=50.89  Aligned_cols=38  Identities=26%  Similarity=0.517  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.||++.|.|.   |.||+.+|+.|...|++|++.+|+.+
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            478999999998   59999999999999999999888753

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.31  E-value=0.021  Score=54.40  Aligned_cols=107  Identities=13%  Similarity=0.112  Sum_probs=69.1

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------cccccc--CCHHHHHhhCCeeEEecCC---ChHhh
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYY--TNIIDLASNCQILIVACSL---TEETH  210 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~--~~l~~l~~~aDvv~l~~p~---~~~t~  210 (313)
                      +++|+|.|||+|..|.+.|+.|...|++|.++|.+....      .+....  ....+.+..+|.|++.-..   +|...
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~~   82 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLS   82 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSCTTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhhCCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHHH
Confidence            678999999999999999999999999999999765332      122221  1124556689999887433   23322


Q ss_pred             -------hccCH-HHH-hhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          211 -------HIVNR-KVI-DALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       211 -------~~i~~-~~l-~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                             .++.+ +.+ ..++...+-|--+.|+--...-+...|++.
T Consensus        83 ~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~  129 (439)
T 2x5o_A           83 AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  129 (439)
T ss_dssp             HHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence                   13333 122 234444555555578877666677777664

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=95.31  E-value=0.03  Score=52.99  Aligned_cols=90  Identities=7%  Similarity=0.136  Sum_probs=66.5

Q ss_pred             cCCCEEEEEc-----CCh---hHHHHHHHHHhcCCcEEEECCCCcc-c-------------cc--ccccCCHHHHHhhCC
Q 021361          142 FSGKSVGIVG-----LGR---IGTAIAKRVEAFGCPISYHSRSEKS-D-------------AN--YKYYTNIIDLASNCQ  197 (313)
Q Consensus       142 l~g~~vgiiG-----~G~---iG~~~a~~l~~~g~~V~~~~~~~~~-~-------------~~--~~~~~~l~~l~~~aD  197 (313)
                      |.|++|+++|     +|.   +.++++..+..+|++|.+..|..-. .             .+  +....++++.++++|
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD  265 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD  265 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence            8899999997     454   9999999999999999998886421 1             12  234678999999999


Q ss_pred             eeEEecCCC----------------h-------------H--hhhccCHHHHhhcCC-CcEEEEcC
Q 021361          198 ILIVACSLT----------------E-------------E--THHIVNRKVIDALGP-SGILINIG  231 (313)
Q Consensus       198 vv~l~~p~~----------------~-------------~--t~~~i~~~~l~~mk~-ga~~in~~  231 (313)
                      +|..-+=..                +             +  ...-++.+.++.+|+ +++|..+.
T Consensus       266 VVytd~W~sm~~Q~ER~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~vt~elm~~ak~~dai~MHcL  331 (418)
T 2yfk_A          266 VVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHCL  331 (418)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHGGGTTCCBCHHHHHTSGGGCCEECCCS
T ss_pred             EEEEccccchhHHHHHhhhhccccchhhhhhhhhhhhHHHHHhhcCCCHHHHHhcCCCCeEEECCC
Confidence            998843110                0             0  123567888888876 89998876

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.30  E-value=0.019  Score=52.65  Aligned_cols=85  Identities=22%  Similarity=0.266  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhc--CCcEEEECCCCccc-----ccccccCCH-------HHHHh--hCCeeEEecCCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAF--GCPISYHSRSEKSD-----ANYKYYTNI-------IDLAS--NCQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~-----~~~~~~~~l-------~~l~~--~aDvv~l~~p~~  206 (313)
                      .|.+|.|+|.|.+|...++.++.+  |++|++.+++.++.     .++....+.       +++..  ..|+|+-++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            688999999999999999999999  99999999876432     122211111       11111  467777776532


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ...     ...++.++++..++.++.
T Consensus       250 ~~~-----~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          250 ETT-----YNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             HHH-----HHHHHHEEEEEEEEECCC
T ss_pred             HHH-----HHHHHHhhcCCEEEEeCC
Confidence            111     235566777777777663

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.29  E-value=0.0058  Score=54.76  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=42.7

Q ss_pred             CEEEEEcC-ChhHHHHHHHHH-hcCCcEE-EECCCCccc-------------ccccccCCHHHHHhhCCeeEEec
Q 021361          145 KSVGIVGL-GRIGTAIAKRVE-AFGCPIS-YHSRSEKSD-------------ANYKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~-~~g~~V~-~~~~~~~~~-------------~~~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      .+|+|+|+ |.||+.+++.+. .-|+++. ++++.....             .+.....++++++.++|+|+-++
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft   80 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   80 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence            48999999 999999999876 4577765 777765321             11222457888888999999555

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.28  E-value=0.027  Score=50.36  Aligned_cols=61  Identities=15%  Similarity=0.300  Sum_probs=46.3

Q ss_pred             CCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcccc---------cccccCCHHHHHhhCCeeEEecCC
Q 021361          144 GKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDA---------NYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       144 g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~---------~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      +++|.|.| .|.||+.+++.|...|++|.+.+|++....         ... ..++.++++++|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47899999 699999999999999999999998743211         112 34466778899998887654

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=95.27  E-value=0.076  Score=50.74  Aligned_cols=34  Identities=24%  Similarity=0.494  Sum_probs=31.3

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEE
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY  172 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~  172 (313)
                      |.+++|++|.|.|+|++|+.+|+.|...|.+|++
T Consensus       225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVa  258 (449)
T 1bgv_A          225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT  258 (449)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            4578999999999999999999999999999875

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.26  E-value=0.025  Score=48.46  Aligned_cols=64  Identities=17%  Similarity=0.115  Sum_probs=48.3

Q ss_pred             cCCCEEEEEc-CChhHHHHHHHHHhc--CCcEEEECCCCcccc----cc-------cccCCHHHHHhhCCeeEEecCC
Q 021361          142 FSGKSVGIVG-LGRIGTAIAKRVEAF--GCPISYHSRSEKSDA----NY-------KYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       142 l~g~~vgiiG-~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~----~~-------~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      ..+++|.|.| .|.||+.+++.|...  |++|.+.+|+.....    ..       ....+++++++++|+|+.+...
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            3578999999 599999999999988  899999998754211    11       1123566788899999987754

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.26  E-value=0.028  Score=49.99  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=47.0

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcC-CcEEEECCCCccc-------cccc-------ccCCHHHHHhhCCeeEEecC
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFG-CPISYHSRSEKSD-------ANYK-------YYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~-------~~~~-------~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .++|.|.|. |.+|+.+++.|...| ++|.+.+|++...       .+..       ...++.++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            578999998 999999999999888 9999999876531       1111       12346677889999998765

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=95.25  E-value=0.02  Score=55.02  Aligned_cols=107  Identities=18%  Similarity=0.295  Sum_probs=74.1

Q ss_pred             cCCCEEEEEcCC----hhHHHHHHHHHhcC-CcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361          142 FSGKSVGIVGLG----RIGTAIAKRVEAFG-CPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       142 l~g~~vgiiG~G----~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      ++-++|.|||.+    .+|..+++.++..| ..|+.+++......+...+.+++++....|++++++|. +.....+.+ 
T Consensus         6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i~G~~~y~sl~~lp~~~Dlavi~vp~-~~~~~~v~e-   83 (457)
T 2csu_A            6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTLIQ-   83 (457)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCH-HHHHHHHHH-
T ss_pred             cCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeECCEeccCCHHHcCCCCCEEEEecCH-HHHHHHHHH-
Confidence            567899999999    78999999999885 67888898866556777778898888889999999984 344444433 


Q ss_pred             HHhhcCCCcEEEEc-CCCCccC-----HHHHHHHHHhCCce
Q 021361          217 VIDALGPSGILINI-GRGAHID-----EPELVSALLEGRLA  251 (313)
Q Consensus       217 ~l~~mk~ga~~in~-~rg~~vd-----~~al~~al~~g~~~  251 (313)
                      ..+ ..-..+++.. +-++.=+     ++.+.+..++..+.
T Consensus        84 ~~~-~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~  123 (457)
T 2csu_A           84 CGE-KGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (457)
T ss_dssp             HHH-HTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHH-cCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCE
Confidence            222 2223333332 2222223     67788888776655

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.24  E-value=0.03  Score=48.20  Aligned_cols=62  Identities=15%  Similarity=0.148  Sum_probs=45.0

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccccc-----cccCCHHHHHh----hCCeeEEecCCC
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDANY-----KYYTNIIDLAS----NCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----~~~~~l~~l~~----~aDvv~l~~p~~  206 (313)
                      |++.|.|. |.||+.+++.|...|++|++.+|+.......     ....+++++++    ..|+|+.+....
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~   73 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVG   73 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCCC
Confidence            57889987 9999999999999999999999876532111     11124555565    789998876543

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=95.24  E-value=0.12  Score=49.94  Aligned_cols=101  Identities=20%  Similarity=0.334  Sum_probs=68.5

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc---ccc---------------------ccccCCHHHHH-hh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS---DAN---------------------YKYYTNIIDLA-SN  195 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---~~~---------------------~~~~~~l~~l~-~~  195 (313)
                      +|.|++|.|-|+|++|+..|+.|...|++|++++.+...   +.+                     .+...+  +++ ..
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~--~il~~~  318 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVD  318 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS--CGGGSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc--cccccc
Confidence            589999999999999999999999999998764322110   000                     011111  333 36


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ||+++-|.     +.+.|+.+..+.++ -.+++-.+-++ ...+| .+.|.+..+.
T Consensus       319 ~DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p-~T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          319 CDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGP-TTPEA-DKIFLERNIM  366 (501)
T ss_dssp             CSEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSC-BCHHH-HHHHHHTTCE
T ss_pred             ceEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCc-CCHHH-HHHHHHCCCE
Confidence            89877554     35678888888886 46777777886 45555 4667777675

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.24  E-value=0.019  Score=51.67  Aligned_cols=65  Identities=12%  Similarity=0.125  Sum_probs=48.2

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc------------ccc--------cccCCHHHHHhhCCee
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD------------ANY--------KYYTNIIDLASNCQIL  199 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~~~--------~~~~~l~~l~~~aDvv  199 (313)
                      .+.|++|.|.|. |.||+.+++.|...|++|++.+|+....            ...        ....+++++++.+|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            467899999998 9999999999999999999998864321            011        1123455667789988


Q ss_pred             EEecCC
Q 021361          200 IVACSL  205 (313)
Q Consensus       200 ~l~~p~  205 (313)
                      +.+...
T Consensus        88 ih~A~~   93 (342)
T 1y1p_A           88 AHIASV   93 (342)
T ss_dssp             EECCCC
T ss_pred             EEeCCC
Confidence            877653

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.23  E-value=0.017  Score=53.62  Aligned_cols=83  Identities=10%  Similarity=0.113  Sum_probs=51.3

Q ss_pred             CEEEEEc-CChhHHHHHHHHHhcC-CcEEEEC--CCCc-ccc----c-----------c--cc-cCCHHHHHh-hCCeeE
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEAFG-CPISYHS--RSEK-SDA----N-----------Y--KY-YTNIIDLAS-NCQILI  200 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~~g-~~V~~~~--~~~~-~~~----~-----------~--~~-~~~l~~l~~-~aDvv~  200 (313)
                      .+|||+| .|.+|+.+++.|.... ++|.+..  ++.. +..    +           .  .. ..+++++++ ++|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            4899999 9999999999998654 5776553  3221 110    0           0  00 024555556 899999


Q ss_pred             EecCCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          201 VACSLTEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       201 l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      +|+|.....+ . -...   ++.|..+|+.+-
T Consensus        89 ~atp~~~~~~-~-a~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           89 SALPSDLAKK-F-EPEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             ECCCHHHHHH-H-HHHH---HHTTCEEEECCS
T ss_pred             ECCCchHHHH-H-HHHH---HHCCCEEEECCc
Confidence            9998532221 1 1122   356888888774

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=95.21  E-value=0.014  Score=53.47  Aligned_cols=62  Identities=15%  Similarity=0.172  Sum_probs=45.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEE-EECCCCc-cc---------cc--ccccCCHHHHHhh--CCeeEEecCCCh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPIS-YHSRSEK-SD---------AN--YKYYTNIIDLASN--CQILIVACSLTE  207 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~-~~~~~~~-~~---------~~--~~~~~~l~~l~~~--aDvv~l~~p~~~  207 (313)
                      .+|||||+|.+|+..++.+ .-+++|. ++|+++. ..         .+  ...+.++++++++  .|+|++++|...
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~   79 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL   79 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence            4899999999999777776 5567765 6787652 21         02  2457899999975  899999998543

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.19  E-value=0.037  Score=48.74  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.||++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~   41 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   41 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999986 68999999999999999999998754

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.18  E-value=0.029  Score=51.42  Aligned_cols=93  Identities=16%  Similarity=0.267  Sum_probs=60.2

Q ss_pred             CCEEEEEc-CChhHHHHHHHHHhcC--CcEEEECCCCccc-------cc----ccc---cCCHHHHHhhCCeeEEecCCC
Q 021361          144 GKSVGIVG-LGRIGTAIAKRVEAFG--CPISYHSRSEKSD-------AN----YKY---YTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       144 g~~vgiiG-~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~-------~~----~~~---~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ..+|+|+| .|.+|..++..|...|  .+|..+|+.....       ..    ...   ..++.+.++.||+|+++.+..
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~   87 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP   87 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence            35899999 8999999999998878  6788898765310       00    111   125677899999999998643


Q ss_pred             hHh---hh-c--cC----H---HHHhhcCCCcEEEEcCCCCccCH
Q 021361          207 EET---HH-I--VN----R---KVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       207 ~~t---~~-~--i~----~---~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      ...   +. +  .|    .   +.+....+++++++.  ..++|.
T Consensus        88 ~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~--SNPv~~  130 (326)
T 1smk_A           88 RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLI--SNPVNS  130 (326)
T ss_dssp             CCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEC--CSSHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCchHH
Confidence            210   00 0  11    1   122234578888886  466666

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.17  E-value=0.016  Score=53.64  Aligned_cols=36  Identities=22%  Similarity=0.259  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+++.+
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~  224 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE  224 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch
Confidence            588999999999999999999999999999887754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.16  E-value=0.034  Score=52.87  Aligned_cols=84  Identities=12%  Similarity=0.182  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCC----------hhHHHHHHHHHhcCCcEEEECCCCcccc--------c--------ccccCCHHHHHhhC
Q 021361          143 SGKSVGIVGLG----------RIGTAIAKRVEAFGCPISYHSRSEKSDA--------N--------YKYYTNIIDLASNC  196 (313)
Q Consensus       143 ~g~~vgiiG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~--------~~~~~~l~~l~~~a  196 (313)
                      .|++|+|+|+.          .-...+++.|...|++|.+|||..+...        +        .....++.+.++++
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS  391 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence            58999999997          5788999999999999999999632211        0        12346788999999


Q ss_pred             CeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      |+|++++... +.+.+ +   .+.|+ +.+++|+ |+
T Consensus       392 d~~vi~~~~~-~~~~~-~---~~~~~-~~~i~D~-r~  421 (436)
T 1mv8_A          392 DVLVLGNGDE-LFVDL-V---NKTPS-GKKLVDL-VG  421 (436)
T ss_dssp             SEEEECSCCG-GGHHH-H---HSCCT-TCEEEES-SS
T ss_pred             cEEEEeCCcH-HHHhh-h---HHhcC-CCEEEEC-CC
Confidence            9999999763 32221 2   34455 6788886 44

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.15  E-value=0.071  Score=47.67  Aligned_cols=37  Identities=16%  Similarity=0.200  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCC
Q 021361          140 SKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      ..++||++.|.|. |.||+.+|+.|...|++|.+.++.
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999996 689999999999999999998876

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.15  E-value=0.039  Score=49.37  Aligned_cols=64  Identities=14%  Similarity=0.174  Sum_probs=45.0

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc-c-------ccccCCHHHHHhh--CCeeEEecCCC
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA-N-------YKYYTNIIDLASN--CQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~-------~~~~~~l~~l~~~--aDvv~l~~p~~  206 (313)
                      .-++|.|.|. |.||+.+++.|...|++|.+.+|...... .       .....+++++++.  .|+|+.+....
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   85 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKS   85 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCC
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCccc
Confidence            3468888875 89999999999999999999998764311 1       1111245566766  89988877643

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.12  E-value=0.016  Score=53.64  Aligned_cols=85  Identities=16%  Similarity=0.141  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc-----cCCHHHHHh-----hCCeeEEecCCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY-----YTNIIDLAS-----NCQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~~l~~-----~aDvv~l~~p~~  206 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++.     .++..     ..++.+.+.     ..|+|+-++...
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            47899999999999999999999999 588888776432     12111     123333222     367777776532


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      +.     -...++.++++..++.+|-
T Consensus       270 ~~-----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          270 EI-----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             HH-----HHHHHHTEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHhcCCEEEEeCC
Confidence            11     1345677788888887764

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.12  E-value=0.035  Score=50.94  Aligned_cols=66  Identities=15%  Similarity=0.197  Sum_probs=47.9

Q ss_pred             cccCCCEEEEEc-CChhHHHHHHHHHhc-CCcEEEECCCCcccc------ccc--------ccCCHHHHHhhCCeeEEec
Q 021361          140 SKFSGKSVGIVG-LGRIGTAIAKRVEAF-GCPISYHSRSEKSDA------NYK--------YYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       140 ~~l~g~~vgiiG-~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~------~~~--------~~~~l~~l~~~aDvv~l~~  203 (313)
                      ..+.+++|.|.| .|.||+.+++.|... |++|++.+|+.....      +..        ...+++++++++|+|+.+.
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A   99 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV   99 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence            357889999999 699999999999987 999999998765321      111        1123556788999988766


Q ss_pred             CC
Q 021361          204 SL  205 (313)
Q Consensus       204 p~  205 (313)
                      ..
T Consensus       100 ~~  101 (372)
T 3slg_A          100 AI  101 (372)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.12  E-value=0.054  Score=49.55  Aligned_cols=93  Identities=13%  Similarity=0.176  Sum_probs=60.6

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCC-------cEEEECCC----Cccc--------c---c----ccccCCHHHHHhhC
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGC-------PISYHSRS----EKSD--------A---N----YKYYTNIIDLASNC  196 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~-------~V~~~~~~----~~~~--------~---~----~~~~~~l~~l~~~a  196 (313)
                      ..+|+|+|. |.+|..++..|...|+       +|..+|+.    .+..        .   .    .....++.+.++.|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            358999998 9999999999988775       78899987    2211        0   0    11135788999999


Q ss_pred             CeeEEecCCChH---hh-hcc--C----H---HHHhhc-CCCcEEEEcCCCCccCH
Q 021361          197 QILIVACSLTEE---TH-HIV--N----R---KVIDAL-GPSGILINIGRGAHIDE  238 (313)
Q Consensus       197 Dvv~l~~p~~~~---t~-~~i--~----~---~~l~~m-k~ga~~in~~rg~~vd~  238 (313)
                      |+|+.+......   ++ .++  |    .   +.+... ++++.||+++  .++|.
T Consensus        85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S--NPv~~  138 (329)
T 1b8p_A           85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG--NPANT  138 (329)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc--CchHH
Confidence            999987653321   11 011  1    1   123334 4788999997  44443

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.12  E-value=0.046  Score=49.00  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=44.0

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC-cc-------------ccccc-------ccCCHHHHHhhCCeeEE
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE-KS-------------DANYK-------YYTNIIDLASNCQILIV  201 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~-~~-------------~~~~~-------~~~~l~~l~~~aDvv~l  201 (313)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|+. ..             ..+..       ...++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            467999995 9999999999999999999999875 11             01111       11245666777887777


Q ss_pred             ecC
Q 021361          202 ACS  204 (313)
Q Consensus       202 ~~p  204 (313)
                      +..
T Consensus        84 ~a~   86 (321)
T 3c1o_A           84 ALP   86 (321)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            665

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.12  E-value=0.044  Score=48.34  Aligned_cols=61  Identities=13%  Similarity=0.163  Sum_probs=46.1

Q ss_pred             EEEEEc-CChhHHHHHHHHHhc-CCcEEEECCCCcccc-----ccc-------ccCCHHHHHhhCCeeEEecCCC
Q 021361          146 SVGIVG-LGRIGTAIAKRVEAF-GCPISYHSRSEKSDA-----NYK-------YYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~-----~~~-------~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +|.|.| .|.||+.+++.|... |++|.+.+|++....     +..       ...++.++++.+|+|+.+.+..
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~   76 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII   76 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence            588999 599999999999987 999999998765421     111       1234667888999999877653

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=95.11  E-value=0.046  Score=52.42  Aligned_cols=36  Identities=6%  Similarity=0.142  Sum_probs=32.0

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEE-EEC
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS-YHS  174 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~-~~~  174 (313)
                      |.+|.|++|.|-|+|++|...|+.|...|.+|+ +.|
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD  283 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSD  283 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEE
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEe
Confidence            456899999999999999999999999999987 444

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.11  E-value=0.039  Score=50.98  Aligned_cols=83  Identities=16%  Similarity=0.107  Sum_probs=49.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEEEE-CCCCccc------c-----c-c--------------cccCCHHHHHhhC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPISYH-SRSEKSD------A-----N-Y--------------KYYTNIIDLASNC  196 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~~~-~~~~~~~------~-----~-~--------------~~~~~l~~l~~~a  196 (313)
                      .+|||+|+|.||+.+++.|... +++|.++ |++++..      .     + +              ....+.++++.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            3799999999999999998765 5776554 3322110      0     0 0              0011344455689


Q ss_pred             CeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          197 QILIVACSLTEETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       197 Dvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      |+|+.|+|.....+..   + -..++.|..+|..+
T Consensus        83 DiV~eatg~~~s~~~a---~-~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           83 DIVVDGAPKKIGKQNL---E-NIYKPHKVKAILQG  113 (343)
T ss_dssp             SEEEECCCTTHHHHHH---H-HTTTTTTCEEEECT
T ss_pred             CEEEECCCccccHHHH---H-HHHHHCCCEEEECC
Confidence            9999999864322211   0 13456676655433

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.11  E-value=0.016  Score=50.95  Aligned_cols=63  Identities=13%  Similarity=0.232  Sum_probs=48.2

Q ss_pred             CCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccccc---------ccccCCHHHHHhhCCeeEEecCC
Q 021361          143 SGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDAN---------YKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~---------~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .+|+|.|.| .|.||+.+++.|...|++|.+.+|+......         .....++.+++++.|+|+.+...
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~   74 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGGI   74 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence            468899999 6999999999999999999999988654321         11123466788899998887643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.09  E-value=0.021  Score=52.46  Aligned_cols=36  Identities=19%  Similarity=0.381  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~  178 (313)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  202 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH  202 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence            47899999999999999999999999 7999988764

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=95.09  E-value=0.052  Score=51.85  Aligned_cols=37  Identities=11%  Similarity=0.237  Sum_probs=32.6

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEE-EECC
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPIS-YHSR  175 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~-~~~~  175 (313)
                      +.++.|++|.|-|+|++|...|+.|...|.+|+ +.|.
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~  271 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDS  271 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECS
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            457899999999999999999999999999986 5553

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.09  E-value=0.032  Score=55.10  Aligned_cols=37  Identities=19%  Similarity=0.446  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~  176 (313)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            57899999999999999999999999998 58888653

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.09  E-value=0.026  Score=51.92  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=24.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc---CCcEEEEC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF---GCPISYHS  174 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~---g~~V~~~~  174 (313)
                      .+|||+|+|.||+.+.+.|...   .++|.+.+
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain   33 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            3799999999999999998765   47776553

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.08  E-value=0.007  Score=56.67  Aligned_cols=62  Identities=16%  Similarity=0.141  Sum_probs=47.3

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhc--CCcEE-EECCCCccc------ccccccCCHHHHHhhCCeeEEecCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAF--GCPIS-YHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~--g~~V~-~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      -.+|||||.| +|+.-++.++..  ++++. ++|++.+..      .++..+.++++++.+.|++++++|..
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~   77 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST   77 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence            3589999999 799888877665  56764 678877542      24556789999999999999999864

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.04  E-value=0.035  Score=51.47  Aligned_cols=30  Identities=23%  Similarity=0.403  Sum_probs=25.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEEEEC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPISYHS  174 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~~~~  174 (313)
                      .+|||+|+|.||+.+.+.|... .++|.+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            3899999999999999999865 67776554

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.03  E-value=0.046  Score=53.62  Aligned_cols=82  Identities=20%  Similarity=0.175  Sum_probs=58.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccccc--------ccCCHHHH-HhhCCeeEEecCCChHhhhccCH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYK--------YYTNIIDL-ASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~--------~~~~l~~l-~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      +++.|+|+|.+|+.+|+.|...|.+|.+.|..++......        ....++++ ++++|.++.+++.+  ..+++-.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d--~~ni~~~  426 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDD--STNIFLT  426 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCH--HHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCc--hHHHHHH
Confidence            7899999999999999999999999999998776432111        11224433 67899999998764  3444555


Q ss_pred             HHHhhcCCCcEEE
Q 021361          216 KVIDALGPSGILI  228 (313)
Q Consensus       216 ~~l~~mk~ga~~i  228 (313)
                      ...+.+.+...+|
T Consensus       427 ~~ak~l~~~~~ii  439 (565)
T 4gx0_A          427 LACRHLHSHIRIV  439 (565)
T ss_dssp             HHHHHHCSSSEEE
T ss_pred             HHHHHHCCCCEEE
Confidence            5666676663333

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.00  E-value=0.012  Score=51.77  Aligned_cols=60  Identities=13%  Similarity=0.183  Sum_probs=43.3

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhc--CCcEEEECCCCcccc-----ccc-------ccCCHHHHHhhCCeeEEecCC
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAF--GCPISYHSRSEKSDA-----NYK-------YYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~-----~~~-------~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      +|.|.|. |.||+.+++.|...  |++|.+.+|++....     +..       ...+++++++++|+|+.+...
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            4778886 99999999999988  999999998765321     111       113466778889998877653

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=94.98  E-value=0.026  Score=53.93  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=63.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcE-EEECCCCcccc-------c----------------------ccccCCHHHHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPI-SYHSRSEKSDA-------N----------------------YKYYTNIIDLA  193 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~-------~----------------------~~~~~~l~~l~  193 (313)
                      -+|||||+|.||+.+++.+... +++| .++|++.+...       +                      ...+.+.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            4899999999999999888754 6675 56788764321       2                      12457899999


Q ss_pred             h--hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCC-CccCHHHHHHHHHhCCce
Q 021361          194 S--NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG-AHIDEPELVSALLEGRLA  251 (313)
Q Consensus       194 ~--~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg-~~vd~~al~~al~~g~~~  251 (313)
                      +  +.|+|+.++|.. ....   +-.+..|+.|.-++...-+ .....+.|.++.++.++.
T Consensus       104 ~d~dIDaVviaTp~p-~~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          104 SNPLIDVIIDATGIP-EVGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             TCTTCCEEEECSCCH-HHHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCEEEEcCCCh-HHHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            7  489999999853 2211   1223445556555432111 112335666666665554

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.98  E-value=0.046  Score=49.49  Aligned_cols=67  Identities=18%  Similarity=0.153  Sum_probs=46.1

Q ss_pred             ccccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccc-------ccccc-------cCCHHHHHhh--CCeeEE
Q 021361          139 GSKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSD-------ANYKY-------YTNIIDLASN--CQILIV  201 (313)
Q Consensus       139 ~~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------~~~~~-------~~~l~~l~~~--aDvv~l  201 (313)
                      ...+.+++|.|.| .|.||+.+++.|...|++|++.+|.....       .....       ..++++++++  +|+|+.
T Consensus        16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih   95 (333)
T 2q1w_A           16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVH   95 (333)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             eecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEE
Confidence            3467899999998 69999999999999999999998865321       11110       1235567777  998888


Q ss_pred             ecCC
Q 021361          202 ACSL  205 (313)
Q Consensus       202 ~~p~  205 (313)
                      +...
T Consensus        96 ~A~~   99 (333)
T 2q1w_A           96 TAAS   99 (333)
T ss_dssp             CCCC
T ss_pred             Ccee
Confidence            7654

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=94.97  E-value=0.019  Score=54.90  Aligned_cols=103  Identities=15%  Similarity=0.188  Sum_probs=65.6

Q ss_pred             CCEEEEEcCChhHHHHHHHHHh----------cCCcE-EEECCCCccc----ccccccCCHHHHHh--hCCeeEEecCC-
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEA----------FGCPI-SYHSRSEKSD----ANYKYYTNIIDLAS--NCQILIVACSL-  205 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~----------~g~~V-~~~~~~~~~~----~~~~~~~~l~~l~~--~aDvv~l~~p~-  205 (313)
                      --+|||||+|.||+.+++.+..          .+.+| .+++++....    .+...+.+++++++  +.|+|+.++|. 
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            3589999999999999987753          34555 4667765432    12345678999997  57999999985 


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRGAHI-DEPELVSALLEGRLA  251 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg~~v-d~~al~~al~~g~~~  251 (313)
                      ..+.. +    ..+.|+.|.-++..--+... ..+.|.++.++.+..
T Consensus        90 ~~h~~-~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           90 EPARE-L----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             TTHHH-H----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHH-H----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            33322 1    23446666655543332222 235677777766554

>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}

Probab=94.96  E-value=0.071  Score=47.00  Aligned_cols=101  Identities=11%  Similarity=0.124  Sum_probs=67.8

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHH-HHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNII-DLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~-~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      ..+++|++||+-.   .+.+.|+.. +++.++|+.+............+ +++.+||+|++.-  +.-..+-++ .+++.
T Consensus       114 ~~~~kV~vIG~~p---~l~~~l~~~-~~v~V~d~~p~~~~~~~~~~~~e~~~l~~~D~v~iTG--sTlvN~Ti~-~lL~~  186 (249)
T 3npg_A          114 DEIKRIAIIGNMP---PVVRTLKEK-YEVYVFERNMKLWDRDTYSDTLEYHILPEVDGIIASA--SCIVNGTLD-MILDR  186 (249)
T ss_dssp             SCCSEEEEESCCH---HHHHHHTTT-SEEEEECCSGGGCCSSEECGGGHHHHGGGCSEEEEET--THHHHTCHH-HHHHH
T ss_pred             cCCCEEEEECCCH---HHHHHHhcc-CCEEEEECCCcccCCCCCChhHHHhhhccCCEEEEEe--eeeccCCHH-HHHHh
Confidence            3569999999976   677778776 89999999987422212223344 5899999999865  222233333 47788


Q ss_pred             cCCCcEEEEcCCC-------------------CccCHHHHHHHHHhCC
Q 021361          221 LGPSGILINIGRG-------------------AHIDEPELVSALLEGR  249 (313)
Q Consensus       221 mk~ga~~in~~rg-------------------~~vd~~al~~al~~g~  249 (313)
                      .+++..+|=+|-.                   .+.|.+.+.+.++.|.
T Consensus       187 ~~~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d~~~~l~~i~~G~  234 (249)
T 3npg_A          187 AKKAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKALVKLKLGS  234 (249)
T ss_dssp             CSSCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHHHHHHHHTC
T ss_pred             CcccCeEEEEecCchhhHHHHhhCCccEEEEEEecCHHHHHHHHHccc
Confidence            8888766665522                   2357777777777774

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=94.91  E-value=0.039  Score=47.63  Aligned_cols=93  Identities=13%  Similarity=0.142  Sum_probs=59.1

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccccc------cc--ccCCHHHHHh---------hCCeeEEec
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDAN------YK--YYTNIIDLAS---------NCQILIVAC  203 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~------~~--~~~~l~~l~~---------~aDvv~l~~  203 (313)
                      .+||++.|.|. |.||+.+++.|...|++|++.+|+......      ..  ...+++++++         ..|+++.+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~A   84 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVA   84 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEcc
Confidence            56899999985 689999999999999999999987653221      01  1122333433         579888876


Q ss_pred             CCC-------hHh----hhcc----------CHHHHhhcCCCcEEEEcCCCC
Q 021361          204 SLT-------EET----HHIV----------NRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       204 p~~-------~~t----~~~i----------~~~~l~~mk~ga~~in~~rg~  234 (313)
                      -..       +.+    +..+          .+..+..|+++..|||++...
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~  136 (241)
T 1dhr_A           85 GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  136 (241)
T ss_dssp             CCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             cccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHH
Confidence            421       111    1111          133456676677899988643

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=94.89  E-value=0.056  Score=46.90  Aligned_cols=66  Identities=23%  Similarity=0.279  Sum_probs=47.0

Q ss_pred             cccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccccc-------ccccCCHHHHHh-------hCCeeEEecC
Q 021361          140 SKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDAN-------YKYYTNIIDLAS-------NCQILIVACS  204 (313)
Q Consensus       140 ~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-------~~~~~~l~~l~~-------~aDvv~l~~p  204 (313)
                      ..+.||++.|.|. |.||+.+++.|...|++|++.+|+......       .....+++++++       ..|+++.+..
T Consensus        11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   90 (247)
T 1uzm_A           11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   90 (247)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            3578999999985 789999999999999999999887643221       111123344444       4699988765


Q ss_pred             C
Q 021361          205 L  205 (313)
Q Consensus       205 ~  205 (313)
                      .
T Consensus        91 ~   91 (247)
T 1uzm_A           91 L   91 (247)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.89  E-value=0.03  Score=51.96  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE  177 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~  177 (313)
                      ..|++++|.|||.|.+|..+|+.|...|. ++..+|+..
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            46889999999999999999999999998 578887653

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.87  E-value=0.018  Score=52.47  Aligned_cols=84  Identities=13%  Similarity=0.211  Sum_probs=57.7

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc-----c-CCHHHHHh-----hCCeeEEecCC
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY-----Y-TNIIDLAS-----NCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~-----~-~~l~~l~~-----~aDvv~l~~p~  205 (313)
                      .|++|.|.|. |.||..+++.++..|++|++.+++.+..     .+...     . .++.+.+.     ..|+++.++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            5889999998 9999999999999999999998865421     11110     1 23444333     36877776642


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                        .+    -...++.++++..++.+|-
T Consensus       225 --~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          225 --EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             --HH----HHHHHTTEEEEEEEEECCC
T ss_pred             --HH----HHHHHHHHhcCCEEEEEec
Confidence              11    2446677888888888774

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.86  E-value=0.037  Score=50.23  Aligned_cols=65  Identities=15%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccc----------------cccc-------ccCCHHHHHhhC
Q 021361          141 KFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSD----------------ANYK-------YYTNIIDLASNC  196 (313)
Q Consensus       141 ~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------------~~~~-------~~~~l~~l~~~a  196 (313)
                      .+.+++|.|.| .|.||+.+++.|...|++|++.+|.....                ....       ...+++++++++
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            35789999999 49999999999999999999999865421                1111       112356677889


Q ss_pred             CeeEEecCC
Q 021361          197 QILIVACSL  205 (313)
Q Consensus       197 Dvv~l~~p~  205 (313)
                      |+|+.+...
T Consensus       102 d~Vih~A~~  110 (351)
T 3ruf_A          102 DHVLHQAAL  110 (351)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            988877654

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.86  E-value=0.14  Score=45.46  Aligned_cols=34  Identities=35%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            467999995 9999999999999999999999874

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=94.85  E-value=0.043  Score=48.60  Aligned_cols=39  Identities=26%  Similarity=0.375  Sum_probs=33.8

Q ss_pred             ccccCCCEEEEEcC-Ch--hHHHHHHHHHhcCCcEEEECCCC
Q 021361          139 GSKFSGKSVGIVGL-GR--IGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~--iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      ...++||++.|.|. |.  ||+.+|+.|...|++|++.+|+.
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            35689999999996 34  99999999999999999998876

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.84  E-value=0.041  Score=49.15  Aligned_cols=62  Identities=11%  Similarity=0.137  Sum_probs=40.7

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc----ccccccCCHHHHHhh--CCeeEEecCC
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNIIDLASN--CQILIVACSL  205 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~~l~~~--aDvv~l~~p~  205 (313)
                      +++|.|.|. |.||+.+++.|...|++|.+.+|+....    .......++++++++  +|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence            679999997 9999999999999999999999765431    111112456677775  8988877653

>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}

Probab=94.82  E-value=0.08  Score=47.16  Aligned_cols=90  Identities=14%  Similarity=0.240  Sum_probs=59.9

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      ...+|++|++||+-    ...+.++.-+++++++++.++..  .......+.++.+||+|++.-  +.-.-+-+ ...|+
T Consensus       137 ~~~~g~kV~vIG~f----P~i~~~~~~~~~l~V~E~~p~~g--~~p~~~~~~~lp~~D~viiTg--stlvN~Tl-~~lL~  207 (270)
T 3l5o_A          137 NEVKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEG--DYPLPASEFILPECDYVYITC--ASVVDKTL-PRLLE  207 (270)
T ss_dssp             TTTTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTT--CEEGGGHHHHGGGCSEEEEET--HHHHHTCH-HHHHH
T ss_pred             cccCCCEEEEECCc----hhHHHHHhcCCCEEEEECCCCCC--CCChhHHHHhhccCCEEEEEe--ehhhcCCH-HHHHh
Confidence            35689999999986    35566677789999999987532  111234567899999999855  11112222 35788


Q ss_pred             hcCCCcEEEEcCCCCccCH
Q 021361          220 ALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~vd~  238 (313)
                      ..|+...+|=+|-....-.
T Consensus       208 ~~~~a~~vvl~GPStp~~P  226 (270)
T 3l5o_A          208 LSRNARRITLVGPGTPLAP  226 (270)
T ss_dssp             HTTTSSEEEEESTTCCCCG
T ss_pred             hCCCCCEEEEECCCchhhH
Confidence            8888877777775444433

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.78  E-value=0.035  Score=50.83  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|++|.|+|. |.+|..+++.++.+|++|++.+++.++
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~  196 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAA  196 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            5889999998 999999999999999999998886653

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=94.77  E-value=0.076  Score=46.92  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .++||++.|.|. |.||+.+|+.|...|++|.+.+++.
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~   65 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA   65 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            589999999996 6799999999999999998875543

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.76  E-value=0.038  Score=50.98  Aligned_cols=66  Identities=15%  Similarity=0.299  Sum_probs=49.0

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcC-CcEEEECCCCccc-------ccccc----c---CCHHHHHhhCCeeEEecC
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFG-CPISYHSRSEKSD-------ANYKY----Y---TNIIDLASNCQILIVACS  204 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~-------~~~~~----~---~~l~~l~~~aDvv~l~~p  204 (313)
                      .+++++|.|.|. |.||+.+++.|...| ++|++.+|.....       .....    .   .+++++++.+|+|+.+..
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            578999999996 999999999999999 9999999875431       11111    1   234456678999988776


Q ss_pred             CC
Q 021361          205 LT  206 (313)
Q Consensus       205 ~~  206 (313)
                      ..
T Consensus       109 ~~  110 (377)
T 2q1s_A          109 YH  110 (377)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=94.75  E-value=0.04  Score=48.34  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.||++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus         4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (267)
T 2gdz_A            4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE   42 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHH
Confidence            467899999986 78999999999999999999988753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.73  E-value=0.013  Score=53.55  Aligned_cols=85  Identities=13%  Similarity=0.196  Sum_probs=56.6

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc------ccccc-----cCCHHHHHh-----hCCeeEEecCC
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKY-----YTNIIDLAS-----NCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~-----~~~l~~l~~-----~aDvv~l~~p~  205 (313)
                      .|++|.|+|. |.||..+++.++..|++|++.+++.++.      .+...     ..+..+.+.     ..|+++.++..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  228 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG  228 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence            4889999999 9999999999999999999998876432      11111     122333222     36777766542


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                        .    .-...++.++++..++.+|..
T Consensus       229 --~----~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          229 --E----ILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             --H----HHHHHHTTEEEEEEEEECCCG
T ss_pred             --c----hHHHHHHHHhhCCEEEEEeec
Confidence              1    123456677888888877643

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=94.73  E-value=0.11  Score=47.85  Aligned_cols=40  Identities=28%  Similarity=0.383  Sum_probs=35.5

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ...|+||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus        40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~   80 (346)
T 3kvo_A           40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQ   80 (346)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             CCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChh
Confidence            34689999999987 78999999999999999999988765

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=94.73  E-value=0.11  Score=46.13  Aligned_cols=39  Identities=21%  Similarity=0.204  Sum_probs=33.8

Q ss_pred             cccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCC
Q 021361          138 LGSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       138 ~~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      +...+.||++.|.|. |.||+.+|+.|...|++|++.+++
T Consensus        23 mm~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   62 (280)
T 4da9_A           23 MMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIG   62 (280)
T ss_dssp             CCSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hhhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            345789999999996 679999999999999999888763

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.72  E-value=0.084  Score=48.74  Aligned_cols=64  Identities=14%  Similarity=0.165  Sum_probs=48.3

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc-----ccc-------ccCCHHHHHhhCCeeEEecCC
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYK-------YYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~-------~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      ..+++|.|.|. |.||+.+++.|...|++|++.+|+.....     ...       ...+++++++.+|+|+.+...
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            36789999998 99999999999999999999988754321     111       112456778899998877653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.72  E-value=0.02  Score=52.32  Aligned_cols=84  Identities=15%  Similarity=0.222  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCcccc-----cccc-----cCCHHHHHh------hCCeeEEecCC
Q 021361          143 SGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKY-----YTNIIDLAS------NCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~-----~~~l~~l~~------~aDvv~l~~p~  205 (313)
                      .|++|.|+|.| .+|..+++.++..|++|++.+++.++..     +...     ..++.+.+.      ..|+|+-++..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            58899999998 9999999999999999999988765421     1111     122332221      46877776642


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                       +.+     ...++.++++..++.+|-
T Consensus       224 -~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          224 -PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             -HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             -hhH-----HHHHHHhcCCCEEEEEee
Confidence             222     234467888888888874

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=94.71  E-value=0.051  Score=47.10  Aligned_cols=92  Identities=21%  Similarity=0.189  Sum_probs=58.2

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccccc-----ccccCCHHHHHhhC----CeeEEecCCCh-H--hhh
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDAN-----YKYYTNIIDLASNC----QILIVACSLTE-E--THH  211 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----~~~~~~l~~l~~~a----Dvv~l~~p~~~-~--t~~  211 (313)
                      |++.|.|. |.||+.+|+.|...|++|++.+|+......     .....++++++++.    |+|+.+.-... .  -+.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~   81 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN   81 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHHH
Confidence            46777775 689999999999999999999987653211     11123455666555    99988775433 0  011


Q ss_pred             c----------cCHHHHhhcCC--CcEEEEcCCCCcc
Q 021361          212 I----------VNRKVIDALGP--SGILINIGRGAHI  236 (313)
Q Consensus       212 ~----------i~~~~l~~mk~--ga~~in~~rg~~v  236 (313)
                      .          +.+..+..|++  +..|||++.....
T Consensus        82 ~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  118 (257)
T 1fjh_A           82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA  118 (257)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence            1          12334455543  3788999876544

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.70  E-value=0.019  Score=51.38  Aligned_cols=42  Identities=19%  Similarity=0.407  Sum_probs=37.5

Q ss_pred             cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          136 FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       136 ~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      ++....++|++|.|||.|.+|.+.++.|...|++|.++++..
T Consensus         5 lpl~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            5 LQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             eeEEEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            345668999999999999999999999999999999998754

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.69  E-value=0.05  Score=49.50  Aligned_cols=65  Identities=14%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc----------------ccccc-------cCCHHHHHhhC
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD----------------ANYKY-------YTNIIDLASNC  196 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------------~~~~~-------~~~l~~l~~~a  196 (313)
                      .+.+++|.|.|. |.||+.+++.|...|++|++.+|.....                .....       ..+++++++.+
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            477899999998 9999999999999999999998865310                11111       12456678889


Q ss_pred             CeeEEecCC
Q 021361          197 QILIVACSL  205 (313)
Q Consensus       197 Dvv~l~~p~  205 (313)
                      |+|+.+...
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            988887764

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=94.68  E-value=0.05  Score=47.38  Aligned_cols=38  Identities=18%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ++.||++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   41 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999986 78999999999999999999998754

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=94.65  E-value=0.076  Score=46.24  Aligned_cols=38  Identities=16%  Similarity=0.189  Sum_probs=30.7

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +++||++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus         6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   44 (257)
T 3tl3_A            6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE   44 (257)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH
T ss_pred             eecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH
Confidence            588999999986 78999999999999999999988653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.62  E-value=0.068  Score=51.06  Aligned_cols=84  Identities=17%  Similarity=0.289  Sum_probs=61.8

Q ss_pred             cccCCCEEEEEcCCh----------hHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEec
Q 021361          140 SKFSGKSVGIVGLGR----------IGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~----------iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      ..++|++|+|+|+.-          =...+++.|...|++|.+|||.....      .......+++++++++|+|++++
T Consensus       329 ~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t  408 (444)
T 3vtf_A          329 GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIAT  408 (444)
T ss_dssp             TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECS
T ss_pred             cccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEcc
Confidence            357899999999862          47789999999999999999976321      12334578999999999999998


Q ss_pred             CCChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          204 SLTEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       204 p~~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      ...+ .+. ++      + ++.+++++ |+
T Consensus       409 ~h~e-f~~-ld------~-~~~vv~D~-Rn  428 (444)
T 3vtf_A          409 AWPQ-YEG-LD------Y-RGKVVVDG-RY  428 (444)
T ss_dssp             CCGG-GGG-SC------C-TTCEEEES-SC
T ss_pred             CCHH-HhC-CC------c-CCCEEEEC-CC
Confidence            7642 221 12      2 36788884 54

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.62  E-value=0.075  Score=45.36  Aligned_cols=60  Identities=13%  Similarity=0.130  Sum_probs=43.2

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccccc-------cccCCHHHHHh------hCCeeEEecC
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDANY-------KYYTNIIDLAS------NCQILIVACS  204 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-------~~~~~l~~l~~------~aDvv~l~~p  204 (313)
                      ||++.|.|. |.||+.+++.|...|++|++.+|+.. ....       ....+++++++      ..|+++.+..
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag   75 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-GEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   75 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-SSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-ccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEccc
Confidence            688999985 79999999999999999999988765 1111       11123455555      5688887654

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=94.59  E-value=0.036  Score=50.74  Aligned_cols=67  Identities=19%  Similarity=0.256  Sum_probs=50.1

Q ss_pred             cccCCCEEEEEc-CChhHHHHHHHHHhc-CC-cEEEECCCCccc---------cccc-------ccCCHHHHHhhCCeeE
Q 021361          140 SKFSGKSVGIVG-LGRIGTAIAKRVEAF-GC-PISYHSRSEKSD---------ANYK-------YYTNIIDLASNCQILI  200 (313)
Q Consensus       140 ~~l~g~~vgiiG-~G~iG~~~a~~l~~~-g~-~V~~~~~~~~~~---------~~~~-------~~~~l~~l~~~aDvv~  200 (313)
                      ..++|++|.|.| .|.||+.+++.|... |+ +|.+++|+..+.         ....       ...++.++++..|+|+
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vi   96 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICI   96 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEE
Confidence            457899999999 599999999999988 98 899999875421         0111       1134566788899998


Q ss_pred             EecCCC
Q 021361          201 VACSLT  206 (313)
Q Consensus       201 l~~p~~  206 (313)
                      .+....
T Consensus        97 h~Aa~~  102 (344)
T 2gn4_A           97 HAAALK  102 (344)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            877543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.59  E-value=0.015  Score=53.12  Aligned_cols=82  Identities=12%  Similarity=0.082  Sum_probs=54.9

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----cccc----cCC---HHHH-HhhCCeeEEecCCChHhhh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----NYKY----YTN---IIDL-ASNCQILIVACSLTEETHH  211 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----~~~~----~~~---l~~l-~~~aDvv~l~~p~~~~t~~  211 (313)
                      .+++.|+|+|.+|+.+++.|...|. |.+.|+.++...    +...    ..+   ++++ ++++|.++++++.+.  .+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~--~n  191 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS--ET  191 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHH--HH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccH--HH
Confidence            5689999999999999999999999 999998875322    1111    122   3333 568999999887543  33


Q ss_pred             ccCHHHHhhcCCCcEEE
Q 021361          212 IVNRKVIDALGPSGILI  228 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~i  228 (313)
                      +.-....+.+.+...++
T Consensus       192 ~~~~~~ar~~~~~~~ii  208 (336)
T 1lnq_A          192 IHCILGIRKIDESVRII  208 (336)
T ss_dssp             HHHHHHHHTTCTTSEEE
T ss_pred             HHHHHHHHHHCCCCeEE
Confidence            34444555666653333

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.55  E-value=0.025  Score=49.79  Aligned_cols=61  Identities=11%  Similarity=0.073  Sum_probs=46.0

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccc----cCCHHHHHhhCCeeEEecCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKY----YTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~----~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      .++|.|.|.|.||+.+++.|...|++|.+.+|+.....     +...    ..+++  +.++|+|+.+....
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~   74 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD   74 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence            36899999999999999999999999999999875321     1111    12343  77899988877643

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.54  E-value=0.018  Score=53.01  Aligned_cols=83  Identities=23%  Similarity=0.253  Sum_probs=54.0

Q ss_pred             CCCEEEEE-cCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccc-----cCCHHHHHh-----hCCeeEEecCCC
Q 021361          143 SGKSVGIV-GLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKY-----YTNIIDLAS-----NCQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgii-G~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~-----~~~l~~l~~-----~aDvv~l~~p~~  206 (313)
                      .|++|.|+ |.|.+|..+++.++..|++|++.+++.++..     +...     ..+..+.+.     ..|+++.++...
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~  246 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA  246 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH
Confidence            57899999 6899999999999999999999998764321     1110     112222222     367776666421


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                            .-...++.++++..++.++
T Consensus       247 ------~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          247 ------YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             ------GHHHHHHTEEEEEEEEECC
T ss_pred             ------HHHHHHHHhccCCEEEEEE
Confidence                  1233556677777777765

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=94.52  E-value=0.35  Score=44.84  Aligned_cols=90  Identities=10%  Similarity=0.118  Sum_probs=61.5

Q ss_pred             ccCCCEEEEEcC-------ChhHHHHHHHHHhcCCcEEEECCCCccc-----------------ccccccCCHHHHHhhC
Q 021361          141 KFSGKSVGIVGL-------GRIGTAIAKRVEAFGCPISYHSRSEKSD-----------------ANYKYYTNIIDLASNC  196 (313)
Q Consensus       141 ~l~g~~vgiiG~-------G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----------------~~~~~~~~l~~l~~~a  196 (313)
                      +++|++++++|.       .++.++.+..+..+|++|.++.+.+.-.                 .......++++.++++
T Consensus       187 dl~g~kv~~~~~~~gd~~~~~Va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~a  266 (359)
T 3kzn_A          187 DLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGA  266 (359)
T ss_dssp             CCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHHTTC
T ss_pred             cccCCeEEEEEeecCCccccchhhhhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHhcCC
Confidence            588999999875       3689999999999999999888753211                 0123457899999999


Q ss_pred             CeeEEecCCChH---------------hhhccCHHHHhhcCCCcEEEEcC
Q 021361          197 QILIVACSLTEE---------------THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       197 Dvv~l~~p~~~~---------------t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      |+|..-.--...               ....++++.++ ++++++|..+.
T Consensus       267 Dvvyt~r~q~~r~~~~~~~~~~~~~~~~~y~v~~~l~~-~~~~ai~MHpl  315 (359)
T 3kzn_A          267 DVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMA-LTNNGVFSHCL  315 (359)
T ss_dssp             SEEEEECCCCGGGTTCCTTHHHHHGGGGGGSBCHHHHH-TSSSCEEECCS
T ss_pred             eEEEEEEEEEeecccchhhhHHHHHHHhccChHHHHhc-CCCCCEEECCC
Confidence            999875422110               01134555554 55677777665

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=94.48  E-value=0.046  Score=50.30  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=24.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHh-cCCcEEEEC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEA-FGCPISYHS  174 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~-~g~~V~~~~  174 (313)
                      .+|||+|+|.||+.+++.+.. -+++|.+.+
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            389999999999999999875 457875543

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.48  E-value=0.062  Score=49.63  Aligned_cols=77  Identities=16%  Similarity=0.249  Sum_probs=53.8

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc-----------------c--cc-
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN-----------------Y--KY-  185 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~-----------------~--~~-  185 (313)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|...-.             ..+                 +  .. 
T Consensus        32 ~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~  111 (346)
T 1y8q_A           32 KRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVD  111 (346)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEE
Confidence            46899999999999999999999999998 58888754210             000                 0  00 


Q ss_pred             ----cCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          186 ----YTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       186 ----~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                          ....+++++++|+|+.+. .+.+++..+++..
T Consensus       112 ~~~~~~~~~~~~~~~dvVv~~~-d~~~~r~~ln~~~  146 (346)
T 1y8q_A          112 TEDIEKKPESFFTQFDAVCLTC-CSRDVIVKVDQIC  146 (346)
T ss_dssp             CSCGGGCCHHHHTTCSEEEEES-CCHHHHHHHHHHH
T ss_pred             ecccCcchHHHhcCCCEEEEcC-CCHHHHHHHHHHH
Confidence                012467888899888765 4666666666543

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.47  E-value=0.039  Score=48.60  Aligned_cols=38  Identities=26%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+.||++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   41 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999886 78999999999999999999988753

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=94.47  E-value=0.034  Score=51.27  Aligned_cols=84  Identities=13%  Similarity=0.203  Sum_probs=52.3

Q ss_pred             CEEEEEc-CChhHHHHHHHHHh-cCCcEEEE-CCC---Cc-cc--------ccc-c-ccC---CHHHHHhhCCeeEEecC
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEA-FGCPISYH-SRS---EK-SD--------ANY-K-YYT---NIIDLASNCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~-~g~~V~~~-~~~---~~-~~--------~~~-~-~~~---~l~~l~~~aDvv~l~~p  204 (313)
                      .+|+|+| .|.+|+.+.+.|.. -++++... +++   .. +.        .+. . ...   +.+++.+++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            4899999 69999999999987 35576544 333   11 11        010 1 111   34555589999999998


Q ss_pred             CChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          205 LTEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      ...+ +.+ -.   ..++.|+.+|+.|..
T Consensus        85 ~~~s-~~~-~~---~~~~~g~~vIDlSa~  108 (337)
T 3dr3_A           85 HEVS-HDL-AP---QFLEAGCVVFDLSGA  108 (337)
T ss_dssp             HHHH-HHH-HH---HHHHTTCEEEECSST
T ss_pred             hHHH-HHH-HH---HHHHCCCEEEEcCCc
Confidence            5322 211 11   224679999998854

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=94.45  E-value=0.048  Score=50.23  Aligned_cols=30  Identities=27%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEEEEC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPISYHS  174 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~~~~  174 (313)
                      .+|||+|+|.||+.+++.|... +++|.+.+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            3899999999999999998865 56765443

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=94.44  E-value=0.044  Score=48.27  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .++||++.|.| .|.||+.+++.|...|++|++.+|+..
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   69 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHP   69 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            48899999998 468999999999999999999888764

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=94.41  E-value=0.081  Score=48.30  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=29.3

Q ss_pred             CCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          144 GKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       144 g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +++|.|.| .|.||+.+++.|...|++|++.+|+..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   36 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            47899999 499999999999999999999988753

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=94.37  E-value=0.035  Score=51.15  Aligned_cols=29  Identities=28%  Similarity=0.414  Sum_probs=23.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhc-CCcEEEEC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF-GCPISYHS  174 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~-g~~V~~~~  174 (313)
                      +|||+|+|.||+.+.+.|... .++|.+.+
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivain   32 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAVN   32 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEEe
Confidence            799999999999999998765 56765543

>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A

Probab=94.37  E-value=0.1  Score=46.47  Aligned_cols=87  Identities=16%  Similarity=0.281  Sum_probs=57.8

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      ...|++|++||+-   -.+.+.++ -++++.++|+.+..  +.......++++.+||+|++.-  +.-..+-+ ..+|+.
T Consensus       138 ~~~g~kV~vIG~~---P~i~~~l~-~~~~v~V~d~~p~~--g~~p~~~~e~ll~~aD~viiTG--sTlvN~Ti-~~lL~~  208 (270)
T 2h1q_A          138 EVKGKKVGVVGHF---PHLESLLE-PICDLSILEWSPEE--GDYPLPASEFILPECDYVYITC--ASVVDKTL-PRLLEL  208 (270)
T ss_dssp             TTTTSEEEEESCC---TTHHHHHT-TTSEEEEEESSCCT--TCEEGGGHHHHGGGCSEEEEET--HHHHHTCH-HHHHHH
T ss_pred             hcCCCEEEEECCC---HHHHHHHh-CCCCEEEEECCCCC--CCCChHHHHHHhhcCCEEEEEe--eeeecCCH-HHHHHh
Confidence            3579999999995   44555554 48899999998863  2222235777999999999855  21222223 347777


Q ss_pred             cCCCcEEEEcCCCCcc
Q 021361          221 LGPSGILINIGRGAHI  236 (313)
Q Consensus       221 mk~ga~~in~~rg~~v  236 (313)
                      .|++..+|=+|-...+
T Consensus       209 ~~~a~~vvl~GPS~p~  224 (270)
T 2h1q_A          209 SRNARRITLVGPGTPL  224 (270)
T ss_dssp             TTTSSEEEEESTTCCC
T ss_pred             CccCCeEEEEecChhh
Confidence            8776677777754433

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.36  E-value=0.063  Score=47.07  Aligned_cols=38  Identities=24%  Similarity=0.502  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|-|.+   .||+++|+.|...|++|.+.+|+.+
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~   43 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER   43 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999975   6999999999999999999998754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=94.35  E-value=0.095  Score=46.72  Aligned_cols=60  Identities=15%  Similarity=0.191  Sum_probs=44.0

Q ss_pred             CCEEEEEc-CChhHHHHHHHHHhcCCcEEEECC-CCcc---c------c----c-------ccccCCHHHHHhhCCeeEE
Q 021361          144 GKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSR-SEKS---D------A----N-------YKYYTNIIDLASNCQILIV  201 (313)
Q Consensus       144 g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~-~~~~---~------~----~-------~~~~~~l~~l~~~aDvv~l  201 (313)
                      ||+|.|.| .|.||+.+++.|...|++|.+..| ....   .      .    .       .....+++++++++|+|+.
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   80 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH   80 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence            68999999 599999999999999999998877 4321   0      0    0       0112356788899998887


Q ss_pred             ec
Q 021361          202 AC  203 (313)
Q Consensus       202 ~~  203 (313)
                      +.
T Consensus        81 ~A   82 (322)
T 2p4h_X           81 TA   82 (322)
T ss_dssp             CC
T ss_pred             cC
Confidence            66

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.34  E-value=0.078  Score=46.62  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCC
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      ...++||++.|.|. |.||+.+|+.|...|++|.+.+++
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~   51 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYAN   51 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            34689999999987 479999999999999999886654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	2e-43
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	1e-34
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	1e-34
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	2e-33
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	2e-30
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	1e-23
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	2e-23
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	4e-20
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	1e-16
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	4e-13
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	6e-13
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	4e-12
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	7e-10
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	8e-10
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	6e-09
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	2e-07
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	5e-07
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	2e-06
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	2e-04
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	2e-04
d2hmva1	134	c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [T	0.001
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	0.002
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	0.002
d1j5pa4	132	c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein	0.003
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	0.003
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	0.004

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  145 bits (366), Expect = 2e-43
 Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 7/190 (3%)

Query: 100 LTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWK--NGHFELGSKFSGKSVGIVGLGRIGT 157
           +T   A++A+ L+L   RR  E ++ +++  W        +G K   K++GI G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 158 AIAKRVEAFGCPISYHSRSEKSDANYK-----YYTNIIDLASNCQILIVACSLTEETHHI 212
           A+AKR + F   I Y      S ++       ++ ++  L S  Q   +    T ET + 
Sbjct: 61  ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYF 120

Query: 213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLN 272
            N+  I +L    I++N  RG  +D   +V+AL  GRLA AG DV+  EP + E    L 
Sbjct: 121 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLP 180

Query: 273 NVVLLPHVGS 282
           N  L PH+GS
Sbjct: 181 NTFLFPHIGS 190

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  122 bits (307), Expect = 1e-34
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 7/187 (3%)

Query: 101 TDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIA 160
           T  VA+L +G +L +LR V E +     G           +  GK +GI+G G IGT + 
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAG-SFEARGKKLGIIGYGHIGTQLG 60

Query: 161 KRVEAFGCPISYHSRSE-KSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID 219
              E+ G  + ++         N     ++ DL +   ++ +       T +++  K I 
Sbjct: 61  ILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEIS 120

Query: 220 ALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-----MLGLNNV 274
            + P  +LIN  RG  +D P L  AL    LAGA +DV+  EP          +   +NV
Sbjct: 121 LMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 180

Query: 275 VLLPHVG 281
           +L PH+G
Sbjct: 181 LLTPHIG 187

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  122 bits (307), Expect = 1e-34
 Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 4/184 (2%)

Query: 101 TDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIA 160
               A+ A+ L+LA  R++   D  ++   WK   F  G++  GK+VG+VGLGRIG  +A
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS-GTEIFGKTVGVVGLGRIGQLVA 60

Query: 161 KRVEAFGCPISYHSRSEKSDANYK---YYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217
           +R+ AFG  +  +          +      ++ DL +    + V    T ET  +++++ 
Sbjct: 61  QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120

Query: 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLL 277
           +    P  I++N  RG  +DE  L  A+  G +  AGLDV+  EP     +  L  VV+ 
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVT 180

Query: 278 PHVG 281
           PH+G
Sbjct: 181 PHLG 184

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  119 bits (299), Expect = 2e-33
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 7/185 (3%)

Query: 104 VADLAVGLVLAVLRRVCEFDEFVKSGKW-KNGHFELGSKFSGKSVGIVGLGRIGTAIAKR 162
           VA+  V ++L+++R      E+ + G W                VG V  GRIG A+ +R
Sbjct: 3   VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 62

Query: 163 VEAFGCPISYHSRS-----EKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV 217
           +  F   + Y  R       + + N  ++    D+   C ++ + C L  ET H++N + 
Sbjct: 63  LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 122

Query: 218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-MLGLNNVVL 276
           +        ++N  RG   D   +  AL  GRLAG   DV+  +P   +     +    +
Sbjct: 123 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM 182

Query: 277 LPHVG 281
            PH+ 
Sbjct: 183 TPHIS 187

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  111 bits (278), Expect = 2e-30
 Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 12/192 (6%)

Query: 102 DDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFEL------GSKFSGKSVGIVGLGRI 155
           ++ AD  +  +L + RR     + ++ G       ++       ++  G+++GI+GLGR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 156 GTAIAKRVEAFGCPISYHSRS----EKSDANYKYYTNIIDLASNCQILIVACSLTEETHH 211
           G A+A R +AFG  + ++        +     +  + + DL  +   + + C L E  HH
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120

Query: 212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ--ML 269
           ++N   +  +     L+N  RG  +DE  L  AL EGR+ GA LDV+E+EP    Q  + 
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180

Query: 270 GLNNVVLLPHVG 281
              N++  PH  
Sbjct: 181 DAPNLICTPHAA 192

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 94.1 bits (232), Expect = 1e-23
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 15/196 (7%)

Query: 101 TDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIA 160
              +A+ A+   L +LR + +    +++G ++     +G +   ++VG++G G IG    
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61

Query: 161 KRVEAFGCPISYHSRS-EKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID 219
           K  + FG  +  +     K D     Y ++ DL     ++ +     E+  HI+N    +
Sbjct: 62  KLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFN 121

Query: 220 ALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ------------ 267
            + P  I+IN  R   ID   ++S L  G+LAG G+D YE E E                
Sbjct: 122 LMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLW 181

Query: 268 --MLGLNNVVLLPHVG 281
             +LG+ NVVL PH+ 
Sbjct: 182 DELLGMPNVVLSPHIA 197

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 92.9 bits (229), Expect = 2e-23
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 5/182 (2%)

Query: 102 DDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAK 161
           D VA+ A+ L+LA  +R+ ++ E +K G +            G+ V ++GLG IGT + K
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE--IPLIQGEKVAVLGLGEIGTRVGK 59

Query: 162 RVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDAL 221
            + A G  +   SR+ K        +    L    +  + A  L + T  +V  + +  +
Sbjct: 60  ILAALGAQVRGFSRTPKEGPWRFTNSLEEAL-REARAAVCALPLNKHTRGLVKYQHLALM 118

Query: 222 GPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE--QMLGLNNVVLLPH 279
               + +N+GR   +D   ++  L E        DV+    +  +  +   L NVV  P 
Sbjct: 119 AEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPW 178

Query: 280 VG 281
           V 
Sbjct: 179 VA 180

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 84.5 bits (207), Expect = 4e-20
 Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 17/194 (8%)

Query: 104 VADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV 163
           +A+ A      +LR+    DE V     +     +G +   + VG+VG G IG    + +
Sbjct: 4   IAEHAAIQAARILRQDKAMDEKVARHDLRWAPT-IGREVRDQVVGVVGTGHIGQVFMQIM 62

Query: 164 EAFGCPISYHSRSEKSDANYK--YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDAL 221
           E FG  +  +      +   K  Y  ++ DL     ++ +         H++N + I  +
Sbjct: 63  EGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 122

Query: 222 GPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQ-------------- 267
               +++N+ RG  +D   ++  L  G++ G  +DVYE E  +  +              
Sbjct: 123 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD 182

Query: 268 MLGLNNVVLLPHVG 281
           ++   NV++ P   
Sbjct: 183 LIARPNVLVTPKTA 196

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 72.7 bits (178), Expect = 1e-16
 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 29/110 (26%)

Query: 58  DAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR 117
            AE +  +P L+ +   + GLD +  +      V V             +   +V+  +R
Sbjct: 41  TAEELAKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVR 99

Query: 118 RVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFG 167
                                        +     G     IAKR +  G
Sbjct: 100 N----------------------------LITYATGGRPRNIAKREDYIG 121

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 63.1 bits (153), Expect = 4e-13
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%)

Query: 3   KIGVLMTTPMSNYLEQELAARFTL-FKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAEL 61
           K  +L+T P+           + +               E + ++ A++         E+
Sbjct: 1   KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60

Query: 62  IDSLPT-LEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRV 119
           ID +P  ++ +++YS+G D IDLD CK + ++V N P   T    D+A      +    
Sbjct: 61  IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALF 119

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 62.9 bits (152), Expect = 6e-13
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 2/127 (1%)

Query: 6   VLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSL 65
           VL+   ++      L  +  +   W                 A++  +    DAE++ + 
Sbjct: 5   VLIADKLAPSTVAALGDQVEVR--WVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAA 62

Query: 66  PTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEF 125
           P L+IVA   VGLD +D+D    + V V N P   +   A    G  +A   R+    EF
Sbjct: 63  PKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEF 122

Query: 126 VKSGKWK 132
           V      
Sbjct: 123 VPDAVNV 129

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 61.5 bits (149), Expect = 4e-12
 Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 13/131 (9%)

Query: 11  PMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAELIDSLPTL 68
            +  YLE       TL     +   +  F+        V+      A    E I     L
Sbjct: 58  GLRKYLES---NGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNL 114

Query: 69  EIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFD----- 123
           ++  +  +G D +DL    D+ V V       +  +   A           C F+     
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIR 174

Query: 124 ---EFVKSGKW 131
                V+ G  
Sbjct: 175 DEYLIVQGGAL 185

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 53.9 bits (129), Expect = 7e-10
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 48  AVVGDTKCGADAELIDSLPTLEIVAS--YSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVA 105
            +         A + + +    I      +VG D ID+   K   +R++N P      V 
Sbjct: 47  GINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVH 106

Query: 106 DLAVGLVLAVLRRVCEFDEFVKSG 129
           ++    +  ++  + + +   +  
Sbjct: 107 NMVYFSLQHLVDFLTKGETSTEVT 130

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 8e-10
 Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 1/128 (0%)

Query: 6   VLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSL 65
           V +       +E  +                +  ++  +     +         E ++  
Sbjct: 4   VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF 63

Query: 66  PTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEF 125
             L I+     G D ID+    D  + V N P          ++ +     R +      
Sbjct: 64  KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVY-SEQASIEMREEAAREIRRAITG 122

Query: 126 VKSGKWKN 133
                 KN
Sbjct: 123 RIPDSLKN 130

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 6e-09
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 1/119 (0%)

Query: 142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIV 201
            +GK   + G G +G   A+ +  FG  +        +          +           
Sbjct: 22  IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGN 81

Query: 202 ACSLTEETHHIVNRKVIDALGPSGILINIG-RGAHIDEPELVSALLEGRLAGAGLDVYE 259
               T     I+  +  + +    I+ NIG     ID   L    +E       +D Y 
Sbjct: 82  IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 19/121 (15%), Positives = 51/121 (42%), Gaps = 1/121 (0%)

Query: 2   EKIGVLMTTPMSNYLEQELAAR-FTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAE 60
           +KI  L+   +     + L A  +T  +    +  ++  +E+      +   ++     +
Sbjct: 3   DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTED 62

Query: 61  LIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVC 120
           +I++   L  + ++++G +++DLD    + + V N P   T +  +     V   L +  
Sbjct: 63  VINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKYS 122

Query: 121 E 121
           +
Sbjct: 123 D 123

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 58  DAELIDSLPT--LEIVASYSVGLDKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAV 115
            AE + +L    +  ++  +VG+D ID+ K K+   ++TN P          AV  ++  
Sbjct: 58  IAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVK 114

Query: 116 LRRVCEFDEFVKSGKW 131
                  +  +  GK 
Sbjct: 115 AFD---NNLELVEGKE 127

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 135 HFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD----ANYKYYTNII 190
           H  +  +   +   IVG G +    A+ +   G  ++ ++ +        AN    T + 
Sbjct: 3   HLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVE 62

Query: 191 DLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPEL 241
                  +     ++       VN++V DA     I  N+     +D P+ 
Sbjct: 63  GPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV-----VDAPKA 108

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
           +F+ + V I G G  +G A A R+ A G  +S    S +     K    +++ A + ++L
Sbjct: 1   RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASK--AAVLETAPDAEVL 58

Query: 200 IVACSLT-EETHHIVNRKVIDALGPSGILIN 229
                ++ E           +  G      N
Sbjct: 59  TTVADVSDEAQVEAYVTATTERFGRIDGFFN 89

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 19/109 (17%), Positives = 29/109 (26%), Gaps = 21/109 (19%)

Query: 140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
           + + GK+V I+GLG  G +      A G                               L
Sbjct: 1   ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT--------------PPGLDKL 46

Query: 200 IVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG 248
             A      + +       D +  S        G  +  P L +A   G
Sbjct: 47  PEAVERHTGSLNDEWLMAADLIVASP-------GIALAHPSLSAAADAG 88

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Length = 134

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK 178
           K   ++GLGR G +I K +   G  +     +E+
Sbjct: 1   KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE 34

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRS-EKSDANYKYYTNIIDLASNCQI 198
              G+   + G    IG AI K +   G  +   SR  E+  +        +      ++
Sbjct: 9   LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARV 68

Query: 199 LIVACSLT--EETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVS 243
           + + C++   EE +++V    +D  G    L+N G G  +   E +S
Sbjct: 69  IPIQCNIRNEEEVNNLVK-STLDTFGKINFLVNNGGGQFLSPAEHIS 114

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 142 FSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILI 200
             G+   + G  R +G  IA+ +   GC +   SR+ +  +        +      + + 
Sbjct: 3   LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASE---AAQKLTEKYGVETMA 59

Query: 201 VACSLT-EETHHIVNRKVIDALGPSGILIN---IGRGAHIDE 238
             C ++  E    +   V +  G    ++N   I R    +E
Sbjct: 60  FRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEE 101

>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]} Length = 132

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1643
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 5/74 (6%)

Query: 147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLT 206
           V I+G+G IG  + +                    +      + +      +  V    +
Sbjct: 5   VLIIGMGNIGKKLVELGNFEKIYAYDRISK-----DIPGVVRLDEFQVPSDVSTVVECAS 59

Query: 207 EETHHIVNRKVIDA 220
            E     + +++  
Sbjct: 60  PEAVKEYSLQILKN 73

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSE 177
           +G+VGLG IG ++A  +   G  +   SR +
Sbjct: 3   IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQIL 199
           +  GK   I G    IG AIA +    G  +    R                + +  QI 
Sbjct: 3   RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGE-----KAAKSVGTPDQIQ 57

Query: 200 IVACSLT-EETHHIVNRKVIDALGPSGILIN 229
                 + E+    +      A GP   L+N
Sbjct: 58  FFQHDSSDEDGWTKLFDATEKAFGPVSTLVN 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.94
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.89
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.89
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.89
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.85
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.83
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.8
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.73
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.6
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.5
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.42
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.38
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.36
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.29
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.29
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.06
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.01
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.97
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.93
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.91
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.81
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.67
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.64
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.58
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.49
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.48
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.37
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.3
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.3
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.26
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.24
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.23
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.21
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.21
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.21
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.2
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.18
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.15
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.15
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.08
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.01
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.95
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.85
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.84
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.75
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.72
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.71
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.68
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.57
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.54
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.51
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.51
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.5
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.44
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.44
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.42
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.4
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.32
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.32
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.29
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.27
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.23
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.23
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.21
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.19
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.16
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.14
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.14
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.12
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.11
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.09
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.08
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.07
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	97.06
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.02
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.02
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	96.99
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.98
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.97
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.96
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.92
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.92
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.92
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.87
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.86
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.84
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.83
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	96.82
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.79
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.79
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.78
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.75
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	96.75
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.74
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	96.73
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.68
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.65
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.65
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.6
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.56
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	96.52
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.52
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.52
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.33
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.3
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	96.26
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	96.24
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.21
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.2
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.19
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.14
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	96.14
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.0
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.95
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.93
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.92
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.91
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.9
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	95.89
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.88
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.85
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	95.75
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.7
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.66
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.64
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.62
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.6
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.6
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.58
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.57
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.56
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.55
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.51
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.5
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.46
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.45
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.33
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.3
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.23
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.19
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.13
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.11
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.06
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.04
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	95.03
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.91
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.87
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.85
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.83
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.82
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.81
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.81
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.75
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.7
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.69
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	94.67
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.66
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.57
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.52
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.49
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.48
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.43
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.43
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.4
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.38
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.37
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.33
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	94.21
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.21
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.17
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.15
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.12
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.08
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.06
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	94.05
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.03
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.01
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.96
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	93.95
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.94
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.93
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.9
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.89
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.8
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.79
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.73
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.73
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.72
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.71
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.62
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.59
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.58
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.5
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.46
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	93.45
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.43
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.35
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.34
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.33
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.3
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	93.28
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.03
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.03
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.98
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.93
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.92
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.91
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.84
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	92.77
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.69
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.61
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.54
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	92.5
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.49
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	92.49
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.37
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	92.27
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	92.2
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.16
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.15
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.04
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.99
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.96
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	91.92
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.86
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.6
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.4
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.28
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.28
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	91.25
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.15
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.98
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.91
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	90.88
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	90.82
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.72
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	90.63
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.4
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.38
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.33
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	90.27
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.24
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.21
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.09
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	90.07
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	90.04
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	90.03
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.01
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	89.92
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.86
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.86
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.76
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	89.75
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	89.73
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	89.67
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.64
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.59
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	89.55
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	89.43
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	89.36
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	89.36
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.31
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.12
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.01
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	88.82
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.39
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	88.33
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	87.86
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	87.84
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	87.76
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	87.75
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.55
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	87.46
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	87.4
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.16
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.13
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	87.06
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	86.94
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.51
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	86.47
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	86.43
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.38
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	86.34
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.95
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	85.5
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	85.46
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	85.45
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	85.45
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	85.38
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.36
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.15
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	85.07
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.56
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	84.29
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.24
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.13
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	83.94
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	83.63
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.12
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.0
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	82.96
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.22
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	82.03
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	81.95
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	81.86
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	81.29
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.1
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	81.03
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	81.0
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	80.99
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	80.81
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	80.58
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	80.52
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	80.33
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	80.03

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.6e-52  Score=358.64  Aligned_cols=181  Identities=30%  Similarity=0.501  Sum_probs=168.1

Q ss_pred             CcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          100 LTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       100 ~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      |+++||||+++++|++.|++.++++.++++.|.+.. ..+.++.|+++||+|+|.||+.+|+++++|||+|++||++..+
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~-~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~   79 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSS-FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP   79 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG-CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc-cccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCCh
Confidence            578999999999999999999999999999997533 3578999999999999999999999999999999999998764


Q ss_pred             ccc---ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEcc
Q 021361          180 DAN---YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLD  256 (313)
Q Consensus       180 ~~~---~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lD  256 (313)
                      ...   .....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++|
T Consensus        80 ~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lD  159 (184)
T d1ygya1          80 ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLD  159 (184)
T ss_dssp             HHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEES
T ss_pred             hHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEe
Confidence            322   12346899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccCCCCcEEEcCCCC
Q 021361          257 VYENEPEVPEQMLGLNNVVLLPHVG  281 (313)
Q Consensus       257 V~~~EP~~~~~l~~~pnvi~TPHia  281 (313)
                      ||++||++++|||++|||++|||||
T Consensus       160 V~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         160 VFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             SCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             CCCCCCCCCchHhcCCCEEECCCCC
Confidence            9999999878999999999999997

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=2.7e-51  Score=352.73  Aligned_cols=183  Identities=33%  Similarity=0.536  Sum_probs=167.6

Q ss_pred             cHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcC--CCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          101 TDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       101 ~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~--~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +.+|||+++++||++.|++.++++.+++|.|..  .....+++++|+++||||+|+||+.+|+++++|||+|.+||+...
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            468999999999999999999999999999963  122357899999999999999999999999999999999998765


Q ss_pred             ccc-----cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 021361          179 SDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGA  253 (313)
Q Consensus       179 ~~~-----~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga  253 (313)
                      ...     ......++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||++||+++|++|++.||
T Consensus        82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a  161 (191)
T d1gdha1          82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA  161 (191)
T ss_dssp             CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred             ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence            322     223457899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCcccCCCCcEEEcCCCCCC
Q 021361          254 GLDVYENEPEVPEQMLGLNNVVLLPHVGSD  283 (313)
Q Consensus       254 ~lDV~~~EP~~~~~l~~~pnvi~TPHia~~  283 (313)
                      ++|||++||.++++||++|||++|||||+.
T Consensus       162 ~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         162 GFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             EESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             EEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999777899999999999999974

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=9.1e-51  Score=349.79  Aligned_cols=181  Identities=28%  Similarity=0.490  Sum_probs=166.4

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC------cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECC
Q 021361          102 DDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH------FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSR  175 (313)
Q Consensus       102 ~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~------~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~  175 (313)
                      ++|||++++++|++.|++..+++.+++|.|.+..      ...+++|+||+|||||+|+||+.+|+++++|||+|.+||+
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            5899999999999999999999999999997432      2347899999999999999999999999999999999999


Q ss_pred             CCcccc----cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          176 SEKSDA----NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       176 ~~~~~~----~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ......    +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  160 (193)
T d1mx3a1          81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  160 (193)
T ss_dssp             TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence            865432    3344678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCCC--cccCCCCcEEEcCCCCC
Q 021361          252 GAGLDVYENEPEVP--EQMLGLNNVVLLPHVGS  282 (313)
Q Consensus       252 ga~lDV~~~EP~~~--~~l~~~pnvi~TPHia~  282 (313)
                      ||++|||++||++.  +||+.+|||++|||+|+
T Consensus       161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999763  58999999999999985

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=3.6e-51  Score=354.31  Aligned_cols=183  Identities=28%  Similarity=0.490  Sum_probs=166.9

Q ss_pred             cHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc
Q 021361          101 TDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD  180 (313)
Q Consensus       101 ~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~  180 (313)
                      .++||||+++++|++.|++..+++.+++|.|.+.....+++|.||+|||||+|+||+.+|+++++|||+|++|||+....
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   81 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG   81 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchh
Confidence            46899999999999999999999999999997543446899999999999999999999999999999999999976543


Q ss_pred             cc-ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361          181 AN-YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE  259 (313)
Q Consensus       181 ~~-~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~  259 (313)
                      .. .....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++|||+
T Consensus        82 ~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~  161 (199)
T d1dxya1          82 DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYE  161 (199)
T ss_dssp             CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred             hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccC
Confidence            22 22356899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC------------C--cccCCCCcEEEcCCCCCC
Q 021361          260 NEPEV------------P--EQMLGLNNVVLLPHVGSD  283 (313)
Q Consensus       260 ~EP~~------------~--~~l~~~pnvi~TPHia~~  283 (313)
                      +||.+            +  ++|+.+|||++|||+|||
T Consensus       162 ~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         162 YETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             THHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             CCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            99952            1  368899999999999997

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-49  Score=341.38  Aligned_cols=182  Identities=30%  Similarity=0.458  Sum_probs=159.3

Q ss_pred             CcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          100 LTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       100 ~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      |+++||||+++++|++.|+++.++..+++|.|.+.. ..+.+|+|++|||||+|.||+.+|+++++|||+|++||+....
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~-~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   79 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA-AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL   79 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccc-cccccccceEEEEeecccchhhhhhhcccccceEeeccccccc
Confidence            689999999999999999999999999999997532 3477999999999999999999999999999999999987654


Q ss_pred             cc-cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCC
Q 021361          180 DA-NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVY  258 (313)
Q Consensus       180 ~~-~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~  258 (313)
                      .. ......++++++++||+|++|+|+|++|+++|+++.|++||++++|||+|||++||++||+++|++|++.+|++|||
T Consensus        80 ~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~  159 (188)
T d1sc6a1          80 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF  159 (188)
T ss_dssp             CCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC-
T ss_pred             hhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecC
Confidence            32 23345689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-----CcccCCCCcEEEcCCCCC
Q 021361          259 ENEPEV-----PEQMLGLNNVVLLPHVGS  282 (313)
Q Consensus       259 ~~EP~~-----~~~l~~~pnvi~TPHia~  282 (313)
                      ++||..     .+||+++|||++|||+||
T Consensus       160 ~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         160 PTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             --------CTTTGGGTTCTTEEEECCCSC
T ss_pred             CCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            999963     248999999999999997

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=6.4e-50  Score=343.79  Aligned_cols=180  Identities=25%  Similarity=0.464  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCC-cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-
Q 021361          103 DVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGH-FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-  180 (313)
Q Consensus       103 ~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-  180 (313)
                      +||||+++++|++.|++.+++..+++|.|.... ...+++|+|++|||||+|+||+.+|+++++|||+|.+||+..... 
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   81 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES   81 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc
Confidence            799999999999999999999999999997322 234678999999999999999999999999999999999876432 


Q ss_pred             ----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEcc
Q 021361          181 ----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLD  256 (313)
Q Consensus       181 ----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lD  256 (313)
                          .+.....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||++|
T Consensus        82 ~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lD  161 (188)
T d2naca1          82 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD  161 (188)
T ss_dssp             HHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEES
T ss_pred             ccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEe
Confidence                2234567899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC-cccCCCCcEEEcCCCCC
Q 021361          257 VYENEPEVP-EQMLGLNNVVLLPHVGS  282 (313)
Q Consensus       257 V~~~EP~~~-~~l~~~pnvi~TPHia~  282 (313)
                      ||++||.+. +|||.+||+++|||+||
T Consensus       162 V~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         162 VWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             CCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             CCCCCCCCCCChHHcCCCeEEccccCc
Confidence            999999875 58999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=3.2e-49  Score=336.92  Aligned_cols=179  Identities=24%  Similarity=0.420  Sum_probs=163.7

Q ss_pred             cHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc
Q 021361          101 TDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD  180 (313)
Q Consensus       101 ~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~  180 (313)
                      |++||||+++++|++.|++..+++.+++|.|.+..  ...+|+||+|||||+|.||+.+|+++++|||+|++|||+....
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~--~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~   78 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV--EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG   78 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS--CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC--CCCcccCceEEEeccccccccceeeeecccccccccccccccc
Confidence            57999999999999999999999999999997532  2347999999999999999999999999999999999987643


Q ss_pred             ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCC
Q 021361          181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYEN  260 (313)
Q Consensus       181 ~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~  260 (313)
                      . .....++++++++||+|++|+|+|++|+++|+++.|++||++++|||+|||+++|+++|+++|++|++.+|++|||++
T Consensus        79 ~-~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~~  157 (181)
T d1qp8a1          79 P-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWG  157 (181)
T ss_dssp             S-SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             c-eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCCC
Confidence            3 334578999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCC-C-cccCCCCcEEEcCCCCC
Q 021361          261 EPEV-P-EQMLGLNNVVLLPHVGS  282 (313)
Q Consensus       261 EP~~-~-~~l~~~pnvi~TPHia~  282 (313)
                      ||+. . +||+.+|||++|||+||
T Consensus       158 e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         158 RNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             TTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             CCCCCCCChHHcCCCEEeccccCc
Confidence            7643 3 48999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=1.9e-49  Score=342.44  Aligned_cols=180  Identities=22%  Similarity=0.400  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc
Q 021361          102 DDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA  181 (313)
Q Consensus       102 ~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  181 (313)
                      ++||||+++++|+++|++..+++.+++|.|.... ..|++|+||+|||||+|+||+.+|+++++|||+|.+||+..+...
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~-~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~   80 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP-TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL   80 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTT-CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCC-CcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccccc
Confidence            6899999999999999999999999999876433 358999999999999999999999999999999999998765432


Q ss_pred             --cccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361          182 --NYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE  259 (313)
Q Consensus       182 --~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~  259 (313)
                        ......++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||++|||+
T Consensus        81 ~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~  160 (197)
T d1j4aa1          81 EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE  160 (197)
T ss_dssp             HHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             ccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccc
Confidence              222356899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC----------C----cccCCCCcEEEcCCCCC
Q 021361          260 NEPEV----------P----EQMLGLNNVVLLPHVGS  282 (313)
Q Consensus       260 ~EP~~----------~----~~l~~~pnvi~TPHia~  282 (313)
                      +||..          |    ++||.+|||++|||+|+
T Consensus       161 ~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             TCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             cCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            99742          1    26899999999999985

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=1.1e-27  Score=192.61  Aligned_cols=128  Identities=23%  Similarity=0.254  Sum_probs=113.4

Q ss_pred             CceEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361            2 EKIGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI   81 (313)
Q Consensus         2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      +||+||++++++++..+.|++.|++... ..+ ..+++.+.++++|+++++..+++++++++++|+||+|++.|+|+|||
T Consensus         1 sMpkvli~~~~~~~~~~~L~~~~~v~~~-~~~-~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~I   78 (130)
T d1ygya2           1 SLPVVLIADKLAPSTVAALGDQVEVRWV-DGP-DRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNV   78 (130)
T ss_dssp             CCCEEEECSSCCGGGGTTSCSSSEEEEC-CTT-SHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CCCEEEEECCCCHHHHHHHhCCcEEEEC-CCC-CHHHHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeecccccch
Confidence            5899999999999999999999976653 222 34566677899999999888899999999999999999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCC
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKW  131 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w  131 (313)
                      |+++|+++||.|+|+|++++++|||+++++||++.|++..+++.+|+|.|
T Consensus        79 Dl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          79 DVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             CHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             hHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            99999999999999999999999999999999999999877666666655

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.89  E-value=2.8e-23  Score=166.27  Aligned_cols=115  Identities=23%  Similarity=0.359  Sum_probs=100.6

Q ss_pred             ceEEEEeCCCChHHHHHHHhcCcEEEecCCC-cchhhHHhccCCceEEEeeCCCCCCHHHhhcCC-CceEEEEcCCCCCc
Q 021361            3 KIGVLMTTPMSNYLEQELAARFTLFKLWTQS-CKNKFFQENSSAIRAVVGDTKCGADAELIDSLP-TLEIVASYSVGLDK   80 (313)
Q Consensus         3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~-~Lk~i~~~~~G~d~   80 (313)
                      ||+||++.+++++..+.+++.|+++.....+ .+.+++.+..+++|++++++..++++++++++| +||+|++.|+|+||
T Consensus         1 K~kVlit~~~~~~~~~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d~   80 (129)
T d1gdha2           1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDH   80 (129)
T ss_dssp             CCEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTT
T ss_pred             CCEEEEeCCCCHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCCcc
Confidence            7999999999999999999999877554433 356777778899999998888899999999997 79999999999999


Q ss_pred             CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhh
Q 021361           81 IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR  117 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r  117 (313)
                      ||+++++++||+|+|+||+++++|||+++++|+.+.+
T Consensus        81 ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          81 IDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             BCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977765555444

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.7e-23  Score=166.78  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=99.6

Q ss_pred             CceEEEEeCCCChHHHHHHHhcC-cEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCc
Q 021361            2 EKIGVLMTTPMSNYLEQELAARF-TLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDK   80 (313)
Q Consensus         2 ~~~~vl~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~   80 (313)
                      +||+||+++++++...+.|++.+ ..+.........+++.+.++++|++++.+...+++++|+++|+||+|+++|+|+||
T Consensus         3 ~kmKILv~d~i~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~gvG~D~   82 (132)
T d1sc6a2           3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQ   82 (132)
T ss_dssp             SSCCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEecccccc
Confidence            47999999999999999999874 34444444445677788889999999888889999999999999999999999999


Q ss_pred             CChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhh
Q 021361           81 IDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLR  117 (313)
Q Consensus        81 id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r  117 (313)
                      ||+++|+++||.|+|+|++++.+|||+++.||++..|
T Consensus        83 IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~  119 (132)
T d1sc6a2          83 VDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLI  119 (132)
T ss_dssp             BCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999987665544333

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.89  E-value=3.4e-25  Score=175.40  Aligned_cols=121  Identities=18%  Similarity=0.240  Sum_probs=107.1

Q ss_pred             eEEEEeCCCChHHHHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcCCh
Q 021361            4 IGVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKIDL   83 (313)
Q Consensus         4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~   83 (313)
                      ++|+++.+++++..+.+++.|.++...           ..+++|+++++   +++++.++++|+||||++.++|+||+|+
T Consensus         1 Mki~v~~~lp~e~~e~L~~~~~v~~~~-----------d~~~~d~~l~~---~~~~~~l~~~~~Lk~i~~~~aG~D~i~~   66 (121)
T d1qp8a2           1 MELYVNFELPPEAEEELRKYFKIVRGG-----------DLGNVEAALVS---RITAEELAKMPRLKFIQVVTAGLDHLPW   66 (121)
T ss_dssp             CEEECCSCCCHHHHHHHHTTCEEECSS-----------CCTTBCCCCBS---CCCHHHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             CEEEEeCCCCHHHHHHhhhcceEeecc-----------cccccceeeee---ccCHHHHhcCCCceEEEecccCcCCCCH
Confidence            589999999999999999999776421           24567777764   5899999999999999999999999999


Q ss_pred             hhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHH
Q 021361           84 DKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRV  163 (313)
Q Consensus        84 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l  163 (313)
                      +.+. +||.|+|++|+++.+||||+++++|++.|+                            ++|+|+|+||+.+|+++
T Consensus        67 ~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~----------------------------l~i~G~G~iG~~iA~r~  117 (121)
T d1qp8a2          67 ESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN----------------------------LITYATGGRPRNIAKRE  117 (121)
T ss_dssp             TTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH----------------------------HHHHHTTSCCSCBCCGG
T ss_pred             HHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC----------------------------EEEEcCCHHHHHHHHHH
Confidence            9984 699999999999999999999999999873                            57999999999999999


Q ss_pred             HhcC
Q 021361          164 EAFG  167 (313)
Q Consensus       164 ~~~g  167 (313)
                      ++||
T Consensus       118 ~a~G  121 (121)
T d1qp8a2         118 DYIG  121 (121)
T ss_dssp             GTC-
T ss_pred             HhcC
Confidence            9987

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.85  E-value=5.7e-22  Score=159.03  Aligned_cols=118  Identities=12%  Similarity=0.115  Sum_probs=93.7

Q ss_pred             eEEEEeCC--CChHHHHHHHhcCcE-EEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCC--CceEEEEcCCCC
Q 021361            4 IGVLMTTP--MSNYLEQELAARFTL-FKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLP--TLEIVASYSVGL   78 (313)
Q Consensus         4 ~~vl~~~~--~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G~   78 (313)
                      |||++.+.  ...+.++++.+.+.+ +.+.+... .+...+.++++|+|++....++++++|+++|  +||+|++.|+|+
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~   79 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFL-DENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGT   79 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCC-CTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCC
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCCC-CHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEccccc
Confidence            46888653  334556666654432 22333222 2344556789999998888899999999865  799999999999


Q ss_pred             CcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHH
Q 021361           79 DKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEF  122 (313)
Q Consensus        79 d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~  122 (313)
                      ||||+++++++||+|+|+|++++++|||++++++|++.|++.++
T Consensus        80 d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~  123 (131)
T d1dxya2          80 DNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKG  123 (131)
T ss_dssp             TTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHH
Confidence            99999999999999999999999999999999999999998754

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.83  E-value=3.1e-21  Score=154.47  Aligned_cols=124  Identities=13%  Similarity=0.113  Sum_probs=98.0

Q ss_pred             ceEEEEeCCCChHH-HHHHHhcCcEEEecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCCCceEEEEcCCCCCcC
Q 021361            3 KIGVLMTTPMSNYL-EQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLPTLEIVASYSVGLDKI   81 (313)
Q Consensus         3 ~~~vl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i   81 (313)
                      +|+|++.+...... +..|++..++.. ++.....+.....+.+++++++++..++++++|+++|+||+|+++|+|+|||
T Consensus         1 mP~v~~ld~~d~~~e~~~L~~~~~v~~-~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d~i   79 (133)
T d1mx3a2           1 MPLVALLDGRDCTVEMPILKDVATVAF-CDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNI   79 (133)
T ss_dssp             CCEEEESSCSCCTTTHHHHTTTCEEEE-CCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCTTB
T ss_pred             CCEEEEecCCcchhhHHHhcccceEEE-ecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcccE
Confidence            58899988654322 455666555443 3333333333344556788888888999999999999999999999999999


Q ss_pred             ChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCCc
Q 021361           82 DLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKWK  132 (313)
Q Consensus        82 d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~  132 (313)
                      |+++|+++||.|+|+|+++. +||||+++++|++.|+++++    .+|.|.
T Consensus        80 D~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a----~~g~~~  125 (133)
T d1mx3a2          80 DIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA----ITGRIP  125 (133)
T ss_dssp             CHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHH----HHSCTT
T ss_pred             eeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHH----Hhcccc
Confidence            99999999999999999887 58999999999999999864    467775

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.80  E-value=1.2e-20  Score=156.97  Aligned_cols=115  Identities=16%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             HHHHHhcCc-EEEecCCCcchhhHHhccCCceEEEeeC--CCCCCHHHhhcCCCceEEEEcCCCCCcCChhhhhcCCcEE
Q 021361           17 EQELAARFT-LFKLWTQSCKNKFFQENSSAIRAVVGDT--KCGADAELIDSLPTLEIVASYSVGLDKIDLDKCKDKAVRV   93 (313)
Q Consensus        17 ~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v   93 (313)
                      .+.|+++.. ++...+.+....++.+.+.++|+++++.  ...+++|+|+++|+||+|+++|+|+||||+++|+++||.|
T Consensus        60 r~~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V  139 (186)
T d2naca2          60 RKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTV  139 (186)
T ss_dssp             HHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred             HHHHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCEE
Confidence            566777654 4444333334566777889999999973  5789999999999999999999999999999999999999


Q ss_pred             EeCCCCCcHHHHHHH--------HHHHHHHhhchHHHHHHHHcCCC
Q 021361           94 TNTPDVLTDDVADLA--------VGLVLAVLRRVCEFDEFVKSGKW  131 (313)
Q Consensus        94 ~n~~~~~~~~vAE~~--------l~~~l~~~r~~~~~~~~~~~~~w  131 (313)
                      +|++++|+.+||||+        +.+++...|++...+..+++|+|
T Consensus       140 ~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         140 AEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             EECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             EECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            999999999999999        77888888888766655666665

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.73  E-value=3.6e-18  Score=136.99  Aligned_cols=120  Identities=18%  Similarity=0.096  Sum_probs=88.5

Q ss_pred             EEEEeCCC--ChHHHHHHH-hcCcEE-EecCCCcchhhHHhccCCceEEEeeCCCCCCHHHhhcCC--CceEEEEcCCCC
Q 021361            5 GVLMTTPM--SNYLEQELA-ARFTLF-KLWTQSCKNKFFQENSSAIRAVVGDTKCGADAELIDSLP--TLEIVASYSVGL   78 (313)
Q Consensus         5 ~vl~~~~~--~~~~~~~l~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G~   78 (313)
                      ||++-...  ..+..+++. +.+++. ...+.+. .+++.+.++++|++++.+..++++++++++|  +||+|++.|+|+
T Consensus         2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~~~-~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~   80 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLL-TPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGV   80 (134)
T ss_dssp             EEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCC-CTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCC
T ss_pred             eEEEEecccccHHHHHHHHHhCCCEEEEECCCCC-CHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCc
Confidence            45654332  233445544 444432 2223332 3445567789999999888999999999755  699999999999


Q ss_pred             CcCChhhhhcCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHcCCC
Q 021361           79 DKIDLDKCKDKAVRVTNTPDVLTDDVADLAVGLVLAVLRRVCEFDEFVKSGKW  131 (313)
Q Consensus        79 d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~l~~~r~~~~~~~~~~~~~w  131 (313)
                      ||||+++++++||.|+|+|++   +|||+++++||+++|++..   ...+|+|
T Consensus        81 d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~---~~~~~k~  127 (134)
T d1j4aa2          81 DNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL---ELVEGKE  127 (134)
T ss_dssp             TTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH---HHHTTCC
T ss_pred             CccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH---HHhhhhc
Confidence            999999999999999999987   4899999999999998644   3444543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-15  Score=124.20  Aligned_cols=102  Identities=19%  Similarity=0.304  Sum_probs=88.4

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      +..|.||+++|+|||.+|+.+|+++++||++|.++++.+...     .++. ..++++++..+|++++++    .++++|
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~-v~~~~~a~~~adivvtaT----Gn~~vI   93 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYE-VTTMDEACQEGNIFVTTT----GCIDII   93 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHTTTCSEEEECS----SCSCSB
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceE-eeehhhhhhhccEEEecC----CCccch
Confidence            346899999999999999999999999999999999987543     2233 458999999999998876    568899


Q ss_pred             CHHHHhhcCCCcEEEEcC-CCCccCHHHHHHHH
Q 021361          214 NRKVIDALGPSGILINIG-RGAHIDEPELVSAL  245 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~-rg~~vd~~al~~al  245 (313)
                      +.+.|++||+|+++.|+| +..-+|.++|.+..
T Consensus        94 ~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~  126 (163)
T d1li4a1          94 LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENA  126 (163)
T ss_dssp             CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHC
T ss_pred             hHHHHHhccCCeEEEEeccccceecHHHHhhcc
Confidence            999999999999999987 67779999988754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.50  E-value=2.1e-14  Score=118.02  Aligned_cols=110  Identities=21%  Similarity=0.364  Sum_probs=95.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKVI  218 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~l  218 (313)
                      +|||||+|.||+.+|+.|...|++|++|||+++..     .+.....+..+++++||+|++|+|..+..+.++.  ...+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~   81 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGII   81 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchh
Confidence            69999999999999999999999999999987643     2344568999999999999999999888888662  3578


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV  257 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV  257 (313)
                      ..+++|.++|+++...+-....+.+.+.+.++.  .+|.
T Consensus        82 ~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (161)
T d1vpda2          82 EGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA  118 (161)
T ss_dssp             HHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence            889999999999999999999999999998887  4553

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.42  E-value=1.9e-13  Score=112.33  Aligned_cols=111  Identities=16%  Similarity=0.244  Sum_probs=95.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccC--HHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN--RKV  217 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~--~~~  217 (313)
                      ++|||||+|.||..+|++|...|++|.+|||+.+..     .+.....++.++++.+|+|++++|..+..+.++.  ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            479999999999999999999999999999987643     2334457899999999999999998888776652  446


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV  257 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV  257 (313)
                      +..+++|.++||++...+-+...+.+.+++.++.  .+|.
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            7889999999999999999999999999998887  5565

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.38  E-value=1.7e-12  Score=106.58  Aligned_cols=143  Identities=19%  Similarity=0.247  Sum_probs=94.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cc-ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----AN-YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~-~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      +|||||+|.||..+|+.|+..|++|++|||+.+..     .+ .....+..+.+++||+|++++|. ..+..+++ +...
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl~-~l~~   79 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTLE-KLIP   79 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHHH-HHGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhhh-hhhh
Confidence            69999999999999999999999999999986532     11 11223445678999999999995 35666664 5778


Q ss_pred             hcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCC-CCC-CcccCCCCcEEEcCCCCCCcHHHHHHHH
Q 021361          220 ALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENE-PEV-PEQMLGLNNVVLLPHVGSDTEETSKAMA  292 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~E-P~~-~~~l~~~pnvi~TPHia~~t~~~~~~~~  292 (313)
                      .+++++++++++......... ...+...-+..-.+...+.. |.. ...|+....+++||+-+ .+.+..+...
T Consensus        80 ~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~-~~~~~~~~v~  152 (165)
T d2f1ka2          80 HLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEY-TDPEQLACLR  152 (165)
T ss_dssp             GSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTT-CCHHHHHHHH
T ss_pred             hcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCC-CCHHHHHHHH
Confidence            899999999998765433333 33333333332222222221 111 12477778899999865 4444444433

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.36  E-value=6.1e-13  Score=108.14  Aligned_cols=98  Identities=17%  Similarity=0.298  Sum_probs=83.8

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCH
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      .|.||++.|+|||.+|+.+|++++++|++|++++..|-..     .+++ ..+++++++.+|+++.++.    .+++|+.
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~-v~~~~~a~~~aDi~vTaTG----n~~vI~~   94 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFN-VVTLDEIVDKGDFFITCTG----NVDVIKL   94 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECCS----SSSSBCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCc-cCchhHccccCcEEEEcCC----CCccccH
Confidence            5899999999999999999999999999999999887542     3344 4689999999999999885    4668999


Q ss_pred             HHHhhcCCCcEEEEcCCCCc-cCHHHHHH
Q 021361          216 KVIDALGPSGILINIGRGAH-IDEPELVS  243 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~-vd~~al~~  243 (313)
                      +.|++||+|+++.|+|.-.. +|.++|.+
T Consensus        95 ~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          95 EHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             HHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             HHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            99999999999999998764 66666654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.29  E-value=2.2e-12  Score=107.28  Aligned_cols=110  Identities=12%  Similarity=0.203  Sum_probs=91.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-------------cccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------------NYKYYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------------~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      ++|||||+|.||..||++|...|++|++|||++++..             +.....++.+.+..+|.+++++|..+.+..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~   82 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence            5799999999999999999999999999999886421             112233556677789999999999888877


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV  257 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV  257 (313)
                      .+ .+.+..+++|.++||++...+-+...+.+.+.+..+.  .+|.
T Consensus        83 v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda  125 (176)
T d2pgda2          83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS  125 (176)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred             HH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence            65 4688899999999999999999999999999998887  4553

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.29  E-value=1.5e-11  Score=101.05  Aligned_cols=143  Identities=18%  Similarity=0.169  Sum_probs=101.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCcccc-----cc--cccCCHHHH-HhhCCeeEEecCCChHhhhccC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDA-----NY--KYYTNIIDL-ASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~-----~~--~~~~~l~~l-~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      |+|+|||+|.||.++|+.|+..|+  +|++||++.+...     +.  ....+.++. ...+|+|++++|. ..+...+.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl~   80 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIAK   80 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhhh
Confidence            579999999999999999998886  6899999875321     11  122344443 3579999999994 34555553


Q ss_pred             HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCC-CCC-CcccCCCCcEEEcCCCCCCcHHHHHH
Q 021361          215 RKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENE-PEV-PEQMLGLNNVVLLPHVGSDTEETSKA  290 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~E-P~~-~~~l~~~pnvi~TPHia~~t~~~~~~  290 (313)
                       +....+++++++++++.....-.+++.+.+...-+.+--+...+.. |.. ...|++-.++++|||-. .+.+..+.
T Consensus        81 -~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~-~~~~~~~~  156 (171)
T d2g5ca2          81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK-TDKKRLKL  156 (171)
T ss_dssp             -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSS-SCHHHHHH
T ss_pred             -hhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCC-CCHHHHHH
Confidence             4677899999999999987777777877777655655555554433 211 23588889999999866 34444443

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.06  E-value=4.4e-11  Score=97.22  Aligned_cols=108  Identities=15%  Similarity=0.200  Sum_probs=85.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc----ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN----YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDAL  221 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~----~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~m  221 (313)
                      ||||||+|.||..||++|...|..+ +|+|+..+...    .....+..+.+.++|++++++|..+...... ...+..+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL   79 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence            6999999999999999999888755 56666543211    1112344566678999999999887776554 4678899


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccC
Q 021361          222 GPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDV  257 (313)
Q Consensus       222 k~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV  257 (313)
                      +++.++||+++..+-....+.+.+++.++.  .+|.
T Consensus        80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          80 REGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             cccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            999999999999999999999999998887  4564

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.01  E-value=1.5e-10  Score=93.53  Aligned_cols=100  Identities=16%  Similarity=0.223  Sum_probs=76.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      +|||||+|.||+.+|+.|...|++|.++++.....     .+.....++++++++||+|++++|...... .+ .+... 
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~-~~-~~~~~-   78 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG-AA-RRAGR-   78 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH-HH-HHHHT-
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH-HH-Hhhcc-
Confidence            79999999999999999999999999999876542     123345689999999999999999654433 22 12222 


Q ss_pred             cCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          221 LGPSGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       221 mk~ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                       ..+.++|+++.........+.+.+++.+
T Consensus        79 -~~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 -HVRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             -TCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             -cCCceeeccCcCCHHHHHHHHHHHhccC
Confidence             2468899999988888888888776543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.97  E-value=5.8e-10  Score=89.80  Aligned_cols=91  Identities=20%  Similarity=0.286  Sum_probs=71.5

Q ss_pred             CCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhc
Q 021361          143 SGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDAL  221 (313)
Q Consensus       143 ~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~m  221 (313)
                      .=++|+||| +|.||+.+|+.|+..|++|.+||+....        ..++.+..+|++++++|... +.. +-.+.+..+
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~--------~~~~~~~~~~~v~~~~~~~~-~~~-v~~~~~~~~   77 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA--------VAESILANADVVIVSVPINL-TLE-TIERLKPYL   77 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG--------GHHHHHTTCSEEEECSCGGG-HHH-HHHHHGGGC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc--------ccchhhhhccccccccchhh-hee-eeecccccc
Confidence            346999999 9999999999999999999999997642        45677889999999998643 332 445678889


Q ss_pred             CCCcEEEEcCCCCccCHHHHHH
Q 021361          222 GPSGILINIGRGAHIDEPELVS  243 (313)
Q Consensus       222 k~ga~~in~~rg~~vd~~al~~  243 (313)
                      ++++++++++.-..--.+++.+
T Consensus        78 ~~~~iiiD~~Svk~~~~~~~~~   99 (152)
T d2pv7a2          78 TENMLLADLTSVKREPLAKMLE   99 (152)
T ss_dssp             CTTSEEEECCSCCHHHHHHHHH
T ss_pred             cCCceEEEecccCHHHHHHHHH
Confidence            9999999998755433344433

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.93  E-value=1.5e-09  Score=87.59  Aligned_cols=95  Identities=19%  Similarity=0.296  Sum_probs=76.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      +|||||+|+||+++++.|...|.+|.+|+|+.++.      .+.....+.++++++||+|+++++.  +.    -.+.++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp--~~----~~~vl~   75 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKP--QL----FETVLK   75 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCG--GG----HHHHHT
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecch--Hh----HHHHhh
Confidence            79999999999999999999999999999986542      2345567899999999999999962  21    135677


Q ss_pred             hcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          220 ALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       220 ~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      .++++..+|++.-|  +..+.|.+.+..+
T Consensus        76 ~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          76 PLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             TSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             hcccceeEeccccc--ccHHHHHhhhccc
Confidence            89999999999876  5677787777543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.91  E-value=1.2e-09  Score=90.19  Aligned_cols=113  Identities=17%  Similarity=0.300  Sum_probs=88.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc-------------ccccCCHHHH---HhhCCeeEEecCCChHh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN-------------YKYYTNIIDL---ASNCQILIVACSLTEET  209 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-------------~~~~~~l~~l---~~~aDvv~l~~p~~~~t  209 (313)
                      +|||||+|.||..+|+.|...|++|++|||++++...             .....+.+++   +..++.+..+++.....
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT   82 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcchh
Confidence            6999999999999999999999999999998754211             1112344444   45788999999887777


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE  259 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~  259 (313)
                      ...++ .....++++.++||++....-+...+.+.+.+..+..+-.-|+.
T Consensus        83 ~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          83 DSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             HHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             hhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            76664 46778999999999999999999999999998888744333333

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.81  E-value=9.5e-09  Score=84.37  Aligned_cols=103  Identities=16%  Similarity=0.197  Sum_probs=77.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc--------------------cccccCCHHHHHhhCCeeEEec
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA--------------------NYKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------------~~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      .||++|||.|.||..+|..|...|++|.+|+|+++...                    ......++.+.+++||+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            37999999999999999999999999999999754210                    0112367899999999999999


Q ss_pred             CCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          204 SLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       204 p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                      |.. ..+..+ ++....++++.+++ ...|.......+.+.+....
T Consensus        81 ~~~-~~~~~~-~~i~~~l~~~~~iv-~~~g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          81 PAI-HHASIA-ANIASYISEGQLII-LNPGATGGALEFRKILRENG  123 (184)
T ss_dssp             CGG-GHHHHH-HHHGGGCCTTCEEE-ESSCCSSHHHHHHHHHHHTT
T ss_pred             chh-HHHHHH-HHhhhccCCCCEEE-EeCCCCccHHHHHHHHHHhc
Confidence            854 344443 44667889999877 45555556666777776654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.67  E-value=1.8e-08  Score=81.95  Aligned_cols=91  Identities=15%  Similarity=0.246  Sum_probs=73.9

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc--------cc----ccCCHHHHHhhCCeeEEecCCCh-
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN--------YK----YYTNIIDLASNCQILIVACSLTE-  207 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--------~~----~~~~l~~l~~~aDvv~l~~p~~~-  207 (313)
                      ..+..+|.|||.|..|..-++.++++|.+|.++|.+.+....        ..    ....+++.+++||+|+.++-... 
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            467889999999999999999999999999999988754211        11    11357888999999998775322 


Q ss_pred             HhhhccCHHHHhhcCCCcEEEEcC
Q 021361          208 ETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       208 ~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ..-.+|.++.++.||||+++||++
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEee
Confidence            345689999999999999999986

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.64  E-value=2.6e-09  Score=85.81  Aligned_cols=84  Identities=12%  Similarity=-0.022  Sum_probs=57.5

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhc
Q 021361          147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDAL  221 (313)
Q Consensus       147 vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~m  221 (313)
                      |||||+|+||+.+++.|+..+..+.+|+|+.++.     .....+.++++++++||+|++|+|.. ...     +.++.+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~-----~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIK-----TVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-THH-----HHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hhh-----HHHhhh
Confidence            7999999999999999987444456899987643     12233567888999999999999963 333     344555


Q ss_pred             -CCCcEEEEcCCCCcc
Q 021361          222 -GPSGILINIGRGAHI  236 (313)
Q Consensus       222 -k~ga~~in~~rg~~v  236 (313)
                       +++.++|+++.+...
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence             478999999876543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.58  E-value=7.2e-08  Score=78.13  Aligned_cols=91  Identities=16%  Similarity=0.324  Sum_probs=68.3

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCcccc------c--ccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSDA------N--YKYYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      .+++++|.|||.|.||+.+++.|...|.+ +++++|+.++..      +  ...+.++.+.+.++|+|+.+++.   ...
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss---~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA---PHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS---SSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC---CCc
Confidence            48899999999999999999999999984 999999865421      1  22346788889999999998863   355


Q ss_pred             ccCHHHHhhc------CCCcEEEEcCCCC
Q 021361          212 IVNRKVIDAL------GPSGILINIGRGA  234 (313)
Q Consensus       212 ~i~~~~l~~m------k~ga~~in~~rg~  234 (313)
                      +|+.+.++..      ++..+|||.|...
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlavPr  126 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIANPR  126 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence            7777766432      2334777776543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.49  E-value=1.9e-07  Score=76.77  Aligned_cols=91  Identities=11%  Similarity=0.259  Sum_probs=69.9

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----cccc-----------------------------c
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYKY-----------------------------Y  186 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~-----------------------------~  186 (313)
                      .+...+|.|||.|..|...++.++++|+.|.++|.+.....     +.++                             .
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            46778999999999999999999999999999998775421     1000                             0


Q ss_pred             CCHHHHHhhCCeeEEecCCCh-HhhhccCHHHHhhcCCCcEEEEcC
Q 021361          187 TNIIDLASNCQILIVACSLTE-ETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       187 ~~l~~l~~~aDvv~l~~p~~~-~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ..+.+.+++||+|+.++-..- ..-.+|.++.++.||||+++||++
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence            124456889999997664322 234488999999999999999986

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.48  E-value=1e-07  Score=77.44  Aligned_cols=90  Identities=18%  Similarity=0.282  Sum_probs=69.9

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccC
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      -|++|+|+|||||+-|++=|..|+..|.+|.+=-|...+.      .+++ ..+++|+.+++|+|++.+|.. .-..+..
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~-v~~~~eA~~~aDiim~L~PD~-~q~~vy~   90 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLK-VADVKTAVAAADVVMILTPDE-FQGRLYK   90 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCE-EECHHHHHHTCSEEEECSCHH-HHHHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccc-cccHHHHhhhcCeeeeecchH-HHHHHHH
Confidence            3789999999999999999999999999987765544321      2333 468999999999999999843 2233566


Q ss_pred             HHHHhhcCCCcEEEEcCCC
Q 021361          215 RKVIDALGPSGILINIGRG  233 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg  233 (313)
                      ++....||+|+.+. .+.|
T Consensus        91 ~~I~p~lk~g~~L~-FaHG  108 (182)
T d1np3a2          91 EEIEPNLKKGATLA-FAHG  108 (182)
T ss_dssp             HHTGGGCCTTCEEE-ESCC
T ss_pred             HhhhhhcCCCcEEE-Eecc
Confidence            77889999998865 4444

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.37  E-value=1.4e-07  Score=75.59  Aligned_cols=99  Identities=15%  Similarity=0.219  Sum_probs=68.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcC-CcEEEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFG-CPISYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      +|||||+|+||+++++.|...| .+|++++|+++..      .+.....+.++ +++||+|+++++. ....     +.+
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavkP-~~~~-----~v~   74 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVKP-QDME-----AAC   74 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSCH-HHHH-----HHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecCH-HHHH-----HhH
Confidence            7999999999999999887666 8899999987542      23333445544 5789999999962 2233     233


Q ss_pred             hhc-CCCcEEEEcCCCCccCHHHHHHHHHh-CCceEE
Q 021361          219 DAL-GPSGILINIGRGAHIDEPELVSALLE-GRLAGA  253 (313)
Q Consensus       219 ~~m-k~ga~~in~~rg~~vd~~al~~al~~-g~~~ga  253 (313)
                      +.+ +.+.++|++.-|-  ..+.+.+.+.. .++..+
T Consensus        75 ~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir~  109 (152)
T d1yqga2          75 KNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVRV  109 (152)
T ss_dssp             TTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEEE
T ss_pred             HHHhhcccEEeecccCC--CHHHHHHHhCcCcceEee
Confidence            333 3478899887775  55677777643 344433

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=6.3e-07  Score=74.63  Aligned_cols=101  Identities=15%  Similarity=0.179  Sum_probs=78.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c------------------ccccCCHH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N------------------YKYYTNII  190 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~------------------~~~~~~l~  190 (313)
                      |+|+|||.|.||+.+|..+...|++|..||++++...                +                  .....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            6999999999999999999999999999999874210                0                  11245788


Q ss_pred             HHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHh
Q 021361          191 DLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLE  247 (313)
Q Consensus       191 ~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~  247 (313)
                      +.+++||+|+=++|-+-+.+.-+-++.-+.++++++|.....+  +....+...+..
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~  139 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTR  139 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSC
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhccC
Confidence            8999999999999998888876666666778888887665443  445556665543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.30  E-value=7.1e-07  Score=74.82  Aligned_cols=103  Identities=16%  Similarity=0.260  Sum_probs=78.8

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHh-hCCeeEEecCCChHhhhccC
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLAS-NCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~-~aDvv~l~~p~~~~t~~~i~  214 (313)
                      .|.||||+|-|+|++|+.+|+.|..+|++|+++|......     .+.. ..+.++++. +||+++-|.     +.+.|+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~-~~~~~~~~~~~~DI~iPcA-----~~~~I~   97 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-AVALEDVLSTPCDVFAPCA-----MGGVIT   97 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGGGGCCCSEEEECS-----CSCCBC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccc-ccCccccccccceeeeccc-----cccccc
Confidence            5999999999999999999999999999999999865432     1222 345677766 799887554     357899


Q ss_pred             HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          215 RKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       215 ~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+..++++ -.+++..+-+++.+++ ..+.|.++.+.
T Consensus        98 ~~~a~~i~-ak~i~e~AN~p~~~~~-~~~~L~~rgI~  132 (201)
T d1c1da1          98 TEVARTLD-CSVVAGAANNVIADEA-ASDILHARGIL  132 (201)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred             HHHHhhhh-hheeeccCCCCcchhh-HHHHhcccceE
Confidence            99999996 3566777777776664 45677777775

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.26  E-value=2.3e-07  Score=77.23  Aligned_cols=88  Identities=11%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------------cc------ccccCCHHHHHhhCCeeEEecCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------------AN------YKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------------~~------~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      ++|+|||.|.+|.++|..|...|.+|..|+|.++..             .+      .....+++++++++|+|++++|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs   87 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT   87 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcH
Confidence            589999999999999999999999999999865311             11      22356899999999999999994


Q ss_pred             ChHhhhccCH---HH-HhhcCCCcEEEEcCCC
Q 021361          206 TEETHHIVNR---KV-IDALGPSGILINIGRG  233 (313)
Q Consensus       206 ~~~t~~~i~~---~~-l~~mk~ga~~in~~rg  233 (313)
                       ...+.++..   .. ....+++..+++++.|
T Consensus        88 -~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          88 -QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             -HHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             -HHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence             334433322   11 1124567789998877

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=1e-06  Score=64.51  Aligned_cols=63  Identities=16%  Similarity=0.149  Sum_probs=46.9

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc------ccc--cCCHHHHHhhCCeeEEec
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN------YKY--YTNIIDLASNCQILIVAC  203 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~------~~~--~~~l~~l~~~aDvv~l~~  203 (313)
                      +++||+|.|+|+|..|.++|+.|...|++|+++|.+......      ...  ...-++.+.+.|+|+++-
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SP   72 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASP   72 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECT
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECC
Confidence            478999999999999999999999999999999986643211      111  112245667888887743

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.23  E-value=2.1e-08  Score=76.50  Aligned_cols=91  Identities=19%  Similarity=0.200  Sum_probs=65.2

Q ss_pred             cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-------ccccc--CCHHHHHhhCCeeEEecCCC
Q 021361          136 FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-------NYKYY--TNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       136 ~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-------~~~~~--~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +|..-+|+||+|.|||.|.+|.+-|+.|..+|++|+++++......       .....  .--++.+..+++|+.+... 
T Consensus         4 ~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d-   82 (113)
T d1pjqa1           4 LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD-   82 (113)
T ss_dssp             EEEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC-
T ss_pred             cceEEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC-
Confidence            3455689999999999999999999999999999999988664321       11110  1112346678887776532 


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      +    .++++..+.+|+..++||+.
T Consensus        83 ~----~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          83 D----TVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             H----HHHHHHHHHHHHTTCEEEET
T ss_pred             H----HHHHHHHHHHHHcCCEEEeC
Confidence            2    24667777788889999975

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.4e-06  Score=69.78  Aligned_cols=86  Identities=15%  Similarity=0.195  Sum_probs=64.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc------------ccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN------------YKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~------------~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      ||+|||.|.||..+|..|...|++|..++|..+....            .....+..+.+..+|+|+++++. .+++..+
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~~   80 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDAV   80 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHHH
Confidence            7999999999999999999999999999998764311            01124556777899999999985 3455443


Q ss_pred             CHHHHhhcCCCcEEEEcCCC
Q 021361          214 NRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg  233 (313)
                      . .....+++++.++...-|
T Consensus        81 ~-~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          81 K-SLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHTTSCTTSCEEEECSS
T ss_pred             H-hhccccCcccEEeeccCc
Confidence            2 344567788888887665

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.21  E-value=1.7e-06  Score=72.54  Aligned_cols=89  Identities=20%  Similarity=0.349  Sum_probs=64.0

Q ss_pred             cCC-CEEEEEcCChhHHHHHHHHHhcC------CcEEE-ECCCCcc-----ccccc----ccCCHHHHHhhCCeeEEecC
Q 021361          142 FSG-KSVGIVGLGRIGTAIAKRVEAFG------CPISY-HSRSEKS-----DANYK----YYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       142 l~g-~~vgiiG~G~iG~~~a~~l~~~g------~~V~~-~~~~~~~-----~~~~~----~~~~l~~l~~~aDvv~l~~p  204 (313)
                      ++| |+|+|||||+.|++=|..|+..|      .+|.+ ..+.+.+     ..++.    ...+.+|+.++||+|++.+|
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            578 89999999999999999999855      55644 3333222     12332    13478999999999999998


Q ss_pred             CChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          205 LTEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       205 ~~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      ...+.. +. ++....||+|+.+.= +.|
T Consensus       121 De~Q~~-vy-~~I~p~Lk~G~~L~F-aHG  146 (226)
T d1qmga2         121 DSAQAD-NY-EKVFSHMKPNSILGL-SHG  146 (226)
T ss_dssp             HHHHHH-HH-HHHHHHSCTTCEEEE-SSS
T ss_pred             hHHHHH-HH-HHHHHhcCCCceeee-cch
Confidence            644333 44 478899999998654 344

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=3.4e-06  Score=68.17  Aligned_cols=131  Identities=17%  Similarity=0.233  Sum_probs=92.2

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.++...         .++.+..++||+|+.++..    .++|..+ 
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------~~l~~~~~~ADivI~a~G~----p~~i~~~-   97 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVGK----PGFIPGD-   97 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSCC----TTCBCTT-
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc---------chhHHHHhhhhHhhhhccC----ccccccc-
Confidence            4578999999999999 89999999999999998887543         3688899999999999864    5677765 


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE  297 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~  297 (313)
                        .+|+|+++||+|--.+.          +|++   .-||-.++      ..+ .--.+||=-||--.-+..-+.+.++.
T Consensus        98 --~vk~g~vvIDvGi~~~~----------~~~~---~Gdvd~~~------v~~-~a~~~TPvPGGVGP~Tva~L~~N~v~  155 (166)
T d1b0aa1          98 --WIKEGAIVIDVGINRLE----------NGKV---VGDVVFED------AAK-RASYITPVPGGVGPMTVATLIENTLQ  155 (166)
T ss_dssp             --TSCTTCEEEECCCEECT----------TSCE---ECSBCHHH------HHH-HCSEECCSSSSSHHHHHHHHHHHHHH
T ss_pred             --ccCCCcEEEecCceecC----------CCCE---EeccccHh------HHh-heeEeCCCCCcccHHHHHHHHHHHHH
Confidence              46899999999854321          2333   23442111      000 12368998888765555555555555


Q ss_pred             HHHHHHcC
Q 021361          298 NLVAHFSN  305 (313)
Q Consensus       298 ni~~~~~g  305 (313)
                      ..+++.+.
T Consensus       156 a~~~~~~~  163 (166)
T d1b0aa1         156 ACVEYHDP  163 (166)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHhCc
Confidence            55555543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.20  E-value=1.1e-06  Score=72.27  Aligned_cols=87  Identities=14%  Similarity=0.286  Sum_probs=63.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-------------c-------cccccCCHHHHHhhCCeeEEecCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-------------A-------NYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------------~-------~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      +|+|||.|.+|.++|..|...|.+|..|.|..+..             .       ......+++++++++|+|++++|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avps   81 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST   81 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccch
Confidence            79999999999999999999999999998854321             0       011246789999999999999994


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCCCc
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRGAH  235 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg~~  235 (313)
                       ...+..+. +....+++. .++.++.|..
T Consensus        82 -~~~~~~~~-~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          82 -DGVLPVMS-RILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             -GGHHHHHH-HHTTTCCSC-EEEECCCSEE
T ss_pred             -hhhHHHHH-hhccccccc-eecccccCcc
Confidence             34444443 355666655 5555666653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.18  E-value=3.5e-06  Score=70.29  Aligned_cols=139  Identities=15%  Similarity=0.115  Sum_probs=91.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------------c-------------cccccCCHHHHHhhCCeeE
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------------A-------------NYKYYTNIIDLASNCQILI  200 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------------~-------------~~~~~~~l~~l~~~aDvv~  200 (313)
                      +|+|||+|-+|..+|..|...|++|++||...+..            .             ......++++.++.||+++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i~   81 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSF   81 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEE
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEEE
Confidence            69999999999999999999999999999865321            0             0123468899999999999


Q ss_pred             EecCCChH---------hhhccC--HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH-h--CCceEEEcc---CCCCCCC
Q 021361          201 VACSLTEE---------THHIVN--RKVIDALGPSGILINIGRGAHIDEPELVSALL-E--GRLAGAGLD---VYENEPE  263 (313)
Q Consensus       201 l~~p~~~~---------t~~~i~--~~~l~~mk~ga~~in~~rg~~vd~~al~~al~-~--g~~~ga~lD---V~~~EP~  263 (313)
                      +|+|....         ....++  ...++..+++.++|.-+...+=-.+.+...+- +  +...  ..|   +|.+|=.
T Consensus        82 i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~--~~~~~~~~~PE~~  159 (202)
T d1mv8a2          82 ICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKA--GVDFGVGTNPEFL  159 (202)
T ss_dssp             ECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCB--TTTBEEEECCCCC
T ss_pred             EecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccc--cccccchhhhhhh
Confidence            99995311         111111  13445677899999988877766666554432 2  2221  122   2566765


Q ss_pred             CCc----ccCCCCcEEEcCCCCCCcHHHHHH
Q 021361          264 VPE----QMLGLNNVVLLPHVGSDTEETSKA  290 (313)
Q Consensus       264 ~~~----~l~~~pnvi~TPHia~~t~~~~~~  290 (313)
                      .+.    .+...|++++    |+.+.++.+.
T Consensus       160 ~~G~a~~d~~~~~~iVi----G~~~~~~~~~  186 (202)
T d1mv8a2         160 RESTAIKDYDFPPMTVI----GELDKQTGDL  186 (202)
T ss_dssp             CTTSHHHHHHSCSCEEE----EESSHHHHHH
T ss_pred             cccchhhhhcCCCeEEE----EeCCHHHHHH
Confidence            553    4677788776    4455554443

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=5.4e-06  Score=67.30  Aligned_cols=135  Identities=16%  Similarity=0.216  Sum_probs=89.2

Q ss_pred             ccccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHH
Q 021361          139 GSKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKV  217 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~  217 (313)
                      +.+++||++.|||-+. +|+.+|.+|...|+.|+.++...         .++.+..+++|+++.+++.    .+++..+ 
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t---------~~l~~~~~~aDivi~a~G~----~~~i~~~-   99 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------AHLDEEVNKGDILVVATGQ----PEMVKGE-   99 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHTTCSEEEECCCC----TTCBCGG-
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc---------ccHHHHHhhccchhhcccc----ccccccc-
Confidence            5579999999999987 89999999999999999888654         3578889999999999864    5567764 


Q ss_pred             HhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 021361          218 IDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIE  297 (313)
Q Consensus       218 l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~  297 (313)
                        ..|+|+++||+|-..+.|.+..    ..+++.   =||-.+      ...+ .-..+||==||--.-+..-+.+.+++
T Consensus       100 --~vk~g~iviDvgi~~~~~~~~~----~~~~~~---gdvd~~------~v~~-~a~~~TPvPGGVGp~Tva~L~~N~v~  163 (170)
T d1a4ia1         100 --WIKPGAIVIDCGINYVPDDKKP----NGRKVV---GDVAYD------EAKE-RASFITPVPGGVGPMTVAMLMQSTVE  163 (170)
T ss_dssp             --GSCTTCEEEECCCBC--------------CCB---CSBCHH------HHTT-TCSEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             --cccCCCeEeccCcccccccccC----CCCEEe---cccchH------hhhh-hceEeCCCCCchhHHHHHHHHHHHHH
Confidence              4799999999986554443221    122332   333111      1111 13458996566544444455555666


Q ss_pred             HHHHHH
Q 021361          298 NLVAHF  303 (313)
Q Consensus       298 ni~~~~  303 (313)
                      --++|+
T Consensus       164 a~~r~l  169 (170)
T d1a4ia1         164 SAKRFL  169 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            666665

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.15  E-value=6.4e-07  Score=74.14  Aligned_cols=99  Identities=20%  Similarity=0.212  Sum_probs=74.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc----------------c-------------ccccCCHHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA----------------N-------------YKYYTNIIDLASN  195 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~~l~~~  195 (313)
                      ++|+|||.|.||+.+|..+...|++|..||++++...                +             .....+. +.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence            5799999999999999999999999999999875310                0             0011222 34689


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHH
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALL  246 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~  246 (313)
                      ||+|+-++|-+-+.+.-+-++.-+.++++++|...+.+  +..+.|.+.+.
T Consensus        84 adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~--l~i~~la~~~~  132 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALK  132 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCS
T ss_pred             cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccc--ccHHHHHHhcc
Confidence            99999999999888887777777888999998776555  44466666554

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=6.3e-06  Score=66.98  Aligned_cols=90  Identities=12%  Similarity=0.167  Sum_probs=67.0

Q ss_pred             cccccCCCEEEEEcCChh-HHHHHHHHHhcCCcEEEECCCCccc--cc--cc------------ccCCHHHHHhhCCeeE
Q 021361          138 LGSKFSGKSVGIVGLGRI-GTAIAKRVEAFGCPISYHSRSEKSD--AN--YK------------YYTNIIDLASNCQILI  200 (313)
Q Consensus       138 ~~~~l~g~~vgiiG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~--~~--~~------------~~~~l~~l~~~aDvv~  200 (313)
                      .|.+++||++.|||-+++ |+.+|.+|...|+.|+.++......  ..  ..            ....+++...++|+|+
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            467899999999999975 9999999999999998887543221  00  00            0123777888999999


Q ss_pred             EecCCChHhhhc-cCHHHHhhcCCCcEEEEcCCCC
Q 021361          201 VACSLTEETHHI-VNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       201 l~~p~~~~t~~~-i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      .++|..    ++ +..+   ..|+|+++||+|-..
T Consensus       103 savG~p----~~~i~~d---~ik~GavvIDvGi~~  130 (171)
T d1edza1         103 TGVPSE----NYKFPTE---YIKEGAVCINFACTK  130 (171)
T ss_dssp             ECCCCT----TCCBCTT---TSCTTEEEEECSSSC
T ss_pred             EccCCC----ccccChh---hcccCceEeeccccc
Confidence            999752    33 5553   468999999999654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.01  E-value=4.3e-05  Score=62.90  Aligned_cols=150  Identities=12%  Similarity=0.068  Sum_probs=98.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----------------------cccccCCHHHHHhhCCeeEEe
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----------------------NYKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----------------------~~~~~~~l~~l~~~aDvv~l~  202 (313)
                      +|+|||+|-+|..+|..+. .|++|++||..++...                       ......+......++|+++++
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~   80 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIA   80 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEEC
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhcccccccc
Confidence            7999999999999998775 6999999998764210                       011224566778899999999


Q ss_pred             cCCChHhhh-ccC-------HHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCCCCCCCCc----ccCC
Q 021361          203 CSLTEETHH-IVN-------RKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLAGAGLDVYENEPEVPE----QMLG  270 (313)
Q Consensus       203 ~p~~~~t~~-~i~-------~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~~EP~~~~----~l~~  270 (313)
                      +|....... ..+       .+.+...+++.++|.-+.-.+-..+.+...+.+.++.      |.+|-..+.    .+..
T Consensus        81 vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~~  154 (196)
T d1dlja2          81 TPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNLY  154 (196)
T ss_dssp             CCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHHS
T ss_pred             CCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhccC
Confidence            996544332 211       1223345678888888888777777787777666543      467776553    3667


Q ss_pred             CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 021361          271 LNNVVLLPHVGSDTEETSKAMADLVIENLVAHFS  304 (313)
Q Consensus       271 ~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~  304 (313)
                      .|++++--+-. .+ .......+.+.+.+.+...
T Consensus       155 p~riv~G~~~~-~~-~~~~~~~~~~~~l~~~~~~  186 (196)
T d1dlja2         155 PSRIIVSCEEN-DS-PKVKADAEKFALLLKSAAK  186 (196)
T ss_dssp             CSCEEEECCTT-SC-HHHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeCCHh-hH-HHHHHHHHHHHHHHHhhhc
Confidence            78887765432 22 2234455566666665543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.85  E-value=1.3e-05  Score=61.82  Aligned_cols=66  Identities=23%  Similarity=0.345  Sum_probs=50.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----cccc-------ccCCHHHH-HhhCCeeEEecCCChHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYK-------YYTNIIDL-ASNCQILIVACSLTEETH  210 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~-------~~~~l~~l-~~~aDvv~l~~p~~~~t~  210 (313)
                      |++.|+|+|.+|+.+|+.|...|.+|+++|..++..     .+..       ....++++ +.+||.++++++.+..+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~   79 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS   79 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence            578999999999999999999999999999876531     1111       11235555 789999999998765544

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=2.6e-05  Score=63.00  Aligned_cols=107  Identities=11%  Similarity=0.100  Sum_probs=70.0

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc---------ccccCCHHH-HHhhCCeeEEecCCChH
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN---------YKYYTNIID-LASNCQILIVACSLTEE  208 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~---------~~~~~~l~~-l~~~aDvv~l~~p~~~~  208 (313)
                      +..+.||+|.|+|.|..+++++-.|...|.+|++++|+.++...         .....+.++ ...++|+|+.++|..-.
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~   92 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS   92 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc
Confidence            34578999999999999999999999999999999998754211         001122232 23578999999987432


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 021361          209 THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEG  248 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g  248 (313)
                      ..  .....++.++++.+++++--.+. ...-|..|-+.|
T Consensus        93 ~~--~~~~~~~~~~~~~~v~D~vY~P~-~T~ll~~A~~~G  129 (170)
T d1nyta1          93 GD--IPAIPSSLIHPGIYCYDMFYQKG-KTPFLAWCEQRG  129 (170)
T ss_dssp             TC--CCCCCGGGCCTTCEEEESCCCSS-CCHHHHHHHHTT
T ss_pred             cC--CCCCcHHHhccCcEEEEeecCCC-CCHHHHHHHHcC
Confidence            21  22223455777888888765553 333344443444

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=3.1e-05  Score=63.31  Aligned_cols=93  Identities=19%  Similarity=0.226  Sum_probs=63.9

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc---------------c-----cccCCHHHHHhhCC
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN---------------Y-----KYYTNIIDLASNCQ  197 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~---------------~-----~~~~~l~~l~~~aD  197 (313)
                      +.+++||+|.|+|.|..|++++..|...|. ++++++|+.+....               .     ....++.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            446899999999999999999999999998 48899998653210               0     00123455678899


Q ss_pred             eeEEecCCChHh---hhccCHHHHhhcCCCcEEEEcCCC
Q 021361          198 ILIVACSLTEET---HHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       198 vv~l~~p~~~~t---~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      +|+.++|.....   ..++.  .++.++++.+++++.-.
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~Y~  129 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECVYN  129 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECCCS
T ss_pred             eeccccCCccccccchhhhh--HHHhhhcchhhHHhhcC
Confidence            999999864221   11111  23557777777777543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.72  E-value=1.5e-05  Score=63.85  Aligned_cols=102  Identities=15%  Similarity=0.114  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc--------------ccccCCHHHHHhhCCeeEEecCCChH
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN--------------YKYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--------------~~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      ++|+|.|||.|.||+.+|+.|...|++|+++||+.+....              .......++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            4789999999999999999999999999999998764211              01113456678889999988875432


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 021361          209 THHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~  250 (313)
                      ..  +   .....+.+..+++.+.-. -+...+.+.......
T Consensus        81 ~~--~---~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~  116 (182)
T d1e5qa1          81 AT--V---IKSAIRQKKHVVTTSYVS-PAMMELDQAAKDAGI  116 (182)
T ss_dssp             HH--H---HHHHHHHTCEEECSSCCC-HHHHHTHHHHHHTTC
T ss_pred             hH--H---HHHHHhhccceeecccCc-HHHHHHHHHhccccc
Confidence            22  1   112234456677765322 123344444444433

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.71  E-value=3.6e-05  Score=65.36  Aligned_cols=104  Identities=15%  Similarity=0.220  Sum_probs=78.7

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccccCCHHHHHh-hCCeeEEecCCChHhhhc
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKYYTNIIDLAS-NCQILIVACSLTEETHHI  212 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~~l~~-~aDvv~l~~p~~~~t~~~  212 (313)
                      .+|.|++|.|-|+|++|+.+|+.|...|++|++.|......      .+.. ..+.++++. .||+++-|.     ..+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~~cDIl~PcA-----~~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCc-ccCCcccccccccEecccc-----cccc
Confidence            46999999999999999999999999999999998765432      1122 235556554 699988765     3677


Q ss_pred             cCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          213 VNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       213 i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      |+.+...+++ -.+++-.+-..+.+.++- +.|.+..+.
T Consensus       109 I~~~~~~~l~-ak~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLK-AKVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCC-CSEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cChHHhhccC-ccEEEecccCCCCCchHH-HHHHhhCcE
Confidence            8888888886 357777777888887764 556666665

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.68  E-value=5.8e-05  Score=64.64  Aligned_cols=104  Identities=17%  Similarity=0.269  Sum_probs=75.2

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc---c--------------------------ccccccCCHH
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS---D--------------------------ANYKYYTNII  190 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---~--------------------------~~~~~~~~l~  190 (313)
                      .+|.|++|.|=|+|++|+.+|+.|...|++|++++.+...   .                          .+.....+.+
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  106 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcc
Confidence            3689999999999999999999999999998876643211   0                          0111123345


Q ss_pred             HHHh-hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          191 DLAS-NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       191 ~l~~-~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +++. .||+++-|..     .+.|+.+..++++ -.+++-.+-+++ ..++ .+.|.+..+.
T Consensus       107 ~i~~~~~DIliPcA~-----~~~I~~~~a~~i~-ak~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         107 AIFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             GGGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hhccccccEEeecch-----hccccHHHHHhcc-cCEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            5554 6999887653     5678888888886 457777777775 6666 4888888887

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=4.8e-05  Score=57.22  Aligned_cols=39  Identities=18%  Similarity=0.322  Sum_probs=35.1

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD  180 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~  180 (313)
                      ..+.||||+|.|..|+.++..++.+|+++.++|++++..
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            356789999999999999999999999999999987654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.54  E-value=0.00014  Score=58.44  Aligned_cols=80  Identities=15%  Similarity=0.240  Sum_probs=55.3

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcE-EEECCCCccccc--ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPI-SYHSRSEKSDAN--YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      -+|||||+|.||+..++.++.. ++++ .+++++.+....  .....+.+++..+.|+|++++|......     -....
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~-----~a~~a   78 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIP-----EQAPK   78 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHH-----HHHHH
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcccHH-----HHHHH
Confidence            4799999999999999999875 6665 466776654322  2334567777889999999999765433     12233


Q ss_pred             cCCCcEEEE
Q 021361          221 LGPSGILIN  229 (313)
Q Consensus       221 mk~ga~~in  229 (313)
                      ++.|.-+|.
T Consensus        79 L~aG~~vv~   87 (170)
T d1f06a1          79 FAQFACTVD   87 (170)
T ss_dssp             HTTTSEEEC
T ss_pred             HHCCCcEEE
Confidence            555654443

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.51  E-value=0.00019  Score=56.92  Aligned_cols=90  Identities=16%  Similarity=0.196  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-----------------ccccCCHHHHHhhCCeeEEecC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-----------------YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-----------------~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      +-+||+|||.|.+|..+|..+...+. ++..+|...+...+                 .....+.++.++.||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            35799999999999999998887775 79999987653211                 0112456788999999999884


Q ss_pred             CC--hH------hhh-cc--C-------HHHHhhcCCCcEEEEcCC
Q 021361          205 LT--EE------THH-IV--N-------RKVIDALGPSGILINIGR  232 (313)
Q Consensus       205 ~~--~~------t~~-~i--~-------~~~l~~mk~ga~~in~~r  232 (313)
                      ..  +.      ++. ++  |       .+.+....|++++++++-
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN  131 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  131 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            32  11      221 11  1       123444578999999753

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.51  E-value=0.00011  Score=55.49  Aligned_cols=100  Identities=13%  Similarity=0.237  Sum_probs=75.5

Q ss_pred             CEEEEEcC----ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          145 KSVGIVGL----GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       145 ~~vgiiG~----G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      |+|+|||.    |..|..+.+.|+..|++|+.+++..+...+...+.+++++-..-|++++++|. +.+..++.+ .. .
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l~~-~~-~   78 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVAKE-AV-E   78 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH-HHHHHHHHH-HH-H
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCH-HHHHHHHHH-HH-h
Confidence            68999995    57899999999999999999999887777888888999999999999999984 344445543 32 2


Q ss_pred             cCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          221 LGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       221 mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      +....+++..|   .. .+.+.+.+++..+.
T Consensus        79 ~g~k~v~~~~g---~~-~~~~~~~a~~~gi~  105 (116)
T d1y81a1          79 AGFKKLWFQPG---AE-SEEIRRFLEKAGVE  105 (116)
T ss_dssp             TTCCEEEECTT---SC-CHHHHHHHHHHTCE
T ss_pred             cCCceEEeccc---hh-hHHHHHHHHHcCCE
Confidence            44456766543   33 45567777776665

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.3e-05  Score=55.05  Aligned_cols=36  Identities=19%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD  180 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~  180 (313)
                      |+|||+|.|-.|++++...+.+|+++.++|+..+..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence            689999999999999999999999999999977643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.44  E-value=0.00014  Score=59.59  Aligned_cols=42  Identities=19%  Similarity=0.302  Sum_probs=37.9

Q ss_pred             cccccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          138 LGSKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       138 ~~~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .+.+|+||++-|.| -|.||+.+|+.|...|++|+..+|+.++
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~   59 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK   59 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHH
Confidence            35679999999999 6999999999999999999999998654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.44  E-value=2.8e-05  Score=63.06  Aligned_cols=40  Identities=15%  Similarity=0.042  Sum_probs=35.5

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      ..+.||+|.|+|.|..+++++..|...+.+|++++|+.++
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~   53 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSK   53 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHH
Confidence            3578999999999999999999998877789999998754

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.42  E-value=0.00014  Score=57.44  Aligned_cols=96  Identities=17%  Similarity=0.265  Sum_probs=62.4

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc---------------ccccCCHHHHHhhCCeeEEecC
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN---------------YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      -.++||+|||.|.+|..+|..+...|.  ++..+|+.++...+               .....+-.+.+++||+|+++..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            457899999999999999999987775  69999987643110               1112234466889999999765


Q ss_pred             CChH---hh-hcc--C-------HHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          205 LTEE---TH-HIV--N-------RKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       205 ~~~~---t~-~~i--~-------~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      ....   ++ .++  |       .+.+....|+++++++  ..++|.-
T Consensus        84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivv--tNPvd~~  129 (148)
T d1ldna1          84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA--TNPVDIL  129 (148)
T ss_dssp             CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHHH
T ss_pred             cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEe--cCccHHH
Confidence            4321   11 111  1       1233445688999998  4445543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00017  Score=57.51  Aligned_cols=101  Identities=20%  Similarity=0.266  Sum_probs=64.8

Q ss_pred             EEEEEcCChhHHH-HHHHHHhc-CCcE-EEECCCCccc------ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361          146 SVGIVGLGRIGTA-IAKRVEAF-GCPI-SYHSRSEKSD------ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       146 ~vgiiG~G~iG~~-~a~~l~~~-g~~V-~~~~~~~~~~------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      +|||||+|.+|+. .+..++.. ++++ .++|++.+..      .+...+.+.++++++.|+|++++|...+..  +-..
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~--~~~~   80 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD--VVST   80 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH--HHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccc--cccc
Confidence            7999999999986 56667654 6775 4678877542      234456789999999999999998654433  2222


Q ss_pred             HHhhcCCC-cEEEEc-CCCCccCHHHHHHHHHhCCce
Q 021361          217 VIDALGPS-GILINI-GRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       217 ~l~~mk~g-a~~in~-~rg~~vd~~al~~al~~g~~~  251 (313)
                      .   ++.| .+++.- ---.+-+.+.|.++.++.++.
T Consensus        81 a---l~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~  114 (164)
T d1tlta1          81 L---LNAGVHVCVDKPLAENLRDAERLVELAARKKLT  114 (164)
T ss_dssp             H---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             c---ccccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence            3   3333 344441 122345556666666666543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.32  E-value=0.00018  Score=56.67  Aligned_cols=87  Identities=21%  Similarity=0.350  Sum_probs=56.8

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc-----------c----cccCCHHHHHhhCCeeEEecCCCh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN-----------Y----KYYTNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~-----------~----~~~~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      |||+|||.|.+|..+|-.|...|.  ++..+|...+...+           .    ....+-.+.++.||+|+++.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            799999999999999999987775  78999987653211           0    011122345789999999866422


Q ss_pred             -------Hhh--------hccC--HHHHhhcCCCcEEEEcC
Q 021361          208 -------ETH--------HIVN--RKVIDALGPSGILINIG  231 (313)
Q Consensus       208 -------~t~--------~~i~--~~~l~~mk~ga~~in~~  231 (313)
                             .++        .++.  .+.+....|++++++++
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence                   111        1111  12345567899999985

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.32  E-value=0.0019  Score=56.14  Aligned_cols=105  Identities=18%  Similarity=0.277  Sum_probs=73.9

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc---cccc-------------------cccCCHHHHHh-h
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS---DANY-------------------KYYTNIIDLAS-N  195 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---~~~~-------------------~~~~~l~~l~~-~  195 (313)
                      ..+|.|++|.|=|+|++|..+|+.|...|++|++++.+...   ..+.                   ....+.++++. .
T Consensus        31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (293)
T d1hwxa1          31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD  110 (293)
T ss_dssp             CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence            45799999999999999999999999999998876543211   0000                   00112334444 7


Q ss_pred             CCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          196 CQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       196 aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ||+++-|.     +.+.|+.+..+.++ -.+++-.+-|++ ..++ .+.|.+..+.
T Consensus       111 ~DIliPaA-----~~~~I~~~~a~~l~-ak~I~EgAN~P~-t~eA-~~~L~~~gI~  158 (293)
T d1hwxa1         111 CDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGPT-TPQA-DKIFLERNIM  158 (293)
T ss_dssp             CSEEEECS-----SSSCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             ccEEeecc-----ccccccHHHHHHHh-hCEEeccCCCCC-Ccch-HHHHHHCCCE
Confidence            99888654     46778888888886 357788888885 5555 4778777776

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.29  E-value=0.00017  Score=55.32  Aligned_cols=81  Identities=19%  Similarity=0.257  Sum_probs=55.1

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc------ccccc----cCCH---HHH-HhhCCeeEEecCCChHhhh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD------ANYKY----YTNI---IDL-ASNCQILIVACSLTEETHH  211 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~~~~~----~~~l---~~l-~~~aDvv~l~~p~~~~t~~  211 (313)
                      +|.|+|+|.+|+.+|+.|...|.+|.+.|..++..      .+...    ..+.   +++ ++++|.++..++..+  .+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~--~N   79 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE--VN   79 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH--HH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH--HH
Confidence            68999999999999999999999999999877531      12111    1222   222 578888888776533  33


Q ss_pred             ccCHHHHhhcCCCcEEE
Q 021361          212 IVNRKVIDALGPSGILI  228 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~i  228 (313)
                      ++-....+.+.+..+++
T Consensus        80 ~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          80 LMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHcCCceEEE
Confidence            44444556676665554

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.27  E-value=0.00022  Score=63.90  Aligned_cols=85  Identities=13%  Similarity=0.211  Sum_probs=65.6

Q ss_pred             CCEEEEEcCChhHHHHHHHHH-hcCC-cEEEECCCCccc----------cc--ccccCCHHHHHhhCCeeEEecCCChHh
Q 021361          144 GKSVGIVGLGRIGTAIAKRVE-AFGC-PISYHSRSEKSD----------AN--YKYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~-~~g~-~V~~~~~~~~~~----------~~--~~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      -++++|||.|..++.-++.+. -++. +|.+|+|+++..          .+  ...+.+++++++.||+|+++++ ++.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~  206 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAY  206 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCC
Confidence            368999999999998888664 5676 599999987531          12  2336799999999999998886 3455


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCC
Q 021361          210 HHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ..++..+   .+|||+.+..+|.
T Consensus       207 ~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         207 ATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             EEEECGG---GCCTTCEEEECSC
T ss_pred             Ccccchh---hcCCCCEEeeccc
Confidence            5677764   4799999999875

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.23  E-value=0.00041  Score=53.61  Aligned_cols=86  Identities=12%  Similarity=0.223  Sum_probs=64.6

Q ss_pred             ccCCCEEEEEcCC----------hhHHHHHHHHHhcCCcEEEECCCCccc----------------ccccccCCHHHHHh
Q 021361          141 KFSGKSVGIVGLG----------RIGTAIAKRVEAFGCPISYHSRSEKSD----------------ANYKYYTNIIDLAS  194 (313)
Q Consensus       141 ~l~g~~vgiiG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~----------------~~~~~~~~l~~l~~  194 (313)
                      .+.+++|||+|+-          +-.-.+++.|...|++|.+|||.-...                .....+.+++++++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            4678999999984          578889999999999999999843211                01223578999999


Q ss_pred             hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                      .+|+|+++++... -     .+....++++.+++++ ||
T Consensus        90 ~~D~ivi~t~h~~-f-----~~l~~~~~~~~~I~D~-~~  121 (136)
T d1mv8a3          90 SSDVLVLGNGDEL-F-----VDLVNKTPSGKKLVDL-VG  121 (136)
T ss_dssp             HCSEEEECSCCGG-G-----HHHHHSCCTTCEEEES-SS
T ss_pred             hceEEEEEeCCHH-H-----HHHHHHhcCCCEEEEC-CC
Confidence            9999999998532 1     2344567788899997 44

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.0011  Score=56.07  Aligned_cols=105  Identities=14%  Similarity=0.169  Sum_probs=76.0

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHH-hcCCcEEEECCCCcc---cc------------------c--ccccCCHHHHHh
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKS---DA------------------N--YKYYTNIIDLAS  194 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~-~~g~~V~~~~~~~~~---~~------------------~--~~~~~~l~~l~~  194 (313)
                      +.+++|++|.|=|+|++|+.+|+.|. ..|++|++++.+...   ..                  .  .....+.++++.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  105 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence            45689999999999999999999995 689998876533211   00                  0  001235677776


Q ss_pred             -hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          195 -NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       195 -~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                       .||+++-|.     ..+.|+.+..++++- .+++-.+-+++ ..++ .+.|.+..+.
T Consensus       106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~-t~~a-~~~L~~rgI~  155 (234)
T d1b26a1         106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPT-TPEA-DEILSRRGIL  155 (234)
T ss_dssp             SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCC-CHHH-HHHHHHCCeE
Confidence             799987654     367899999999974 57777777776 4555 5778888776

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00013  Score=58.45  Aligned_cols=37  Identities=43%  Similarity=0.577  Sum_probs=34.0

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|+++++++++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k   63 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhH
Confidence            4789999999999999999999999999999987764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.19  E-value=0.00051  Score=54.65  Aligned_cols=37  Identities=27%  Similarity=0.459  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.||...++.++.+|++|+++++++++
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r   62 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRR   62 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHH
Confidence            4679999999999999999999999999999988753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.16  E-value=0.00028  Score=55.45  Aligned_cols=93  Identities=15%  Similarity=0.256  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------c-cccCCHHHHHhhCCeeEEecCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------Y-KYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~-~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      +.+||+|||.|.+|..+|..|...|.  +|..+|+..+...+              . ....+.++ ++.||+|+++...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH-hccccEEEEeccc
Confidence            45799999999999999999987774  79999987643110              0 11234444 5899999997643


Q ss_pred             ChH---hhh-c-------cC--HHHHhhcCCCcEEEEcCCCCccCH
Q 021361          206 TEE---THH-I-------VN--RKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       206 ~~~---t~~-~-------i~--~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      ...   ++. +       +.  .+.+..-.|++++++++  .++|.
T Consensus        83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt--NPvdv  126 (146)
T d1ez4a1          83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA--NPVDI  126 (146)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC--CccHH
Confidence            221   111 1       11  12344567889999986  34443

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.14  E-value=0.00025  Score=57.49  Aligned_cols=101  Identities=17%  Similarity=0.154  Sum_probs=65.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhc-CCcEE-EECCCCccc----------ccccccCCHHHHHh--hCCeeEEecCCChHhhh
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF-GCPIS-YHSRSEKSD----------ANYKYYTNIIDLAS--NCQILIVACSLTEETHH  211 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~----------~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~  211 (313)
                      ++||||+|.+|+..++.++.. +++|. ++|++.+..          .....+.+++++++  +.|+|++++|...+...
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~~   82 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVEW   82 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcch
Confidence            799999999999999999876 66765 568765431          11234679999985  57899999986544332


Q ss_pred             ccCHHHHhhcCCCcE-EEE-cCCCCccCHHHHHHHHHhCCce
Q 021361          212 IVNRKVIDALGPSGI-LIN-IGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~-~in-~~rg~~vd~~al~~al~~g~~~  251 (313)
                           ....++.|.- ++. ..--.+-+.+.|.+..++.++.
T Consensus        83 -----~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          83 -----AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             -----HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             -----hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence                 2333555543 332 1112334446677777777665

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.14  E-value=0.00015  Score=55.91  Aligned_cols=108  Identities=16%  Similarity=0.249  Sum_probs=75.5

Q ss_pred             cCCCEEEEEcC----ChhHHHHHHHHHhcC-CcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361          142 FSGKSVGIVGL----GRIGTAIAKRVEAFG-CPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       142 l~g~~vgiiG~----G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      ++-++|+|||.    |..|..+.+.|+..| .+|+.+++..+...+...+.+++++-..-|++++++| .+.+..++.+ 
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~~~~-   83 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDTLIQ-   83 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSC-HHHHHHHHHH-
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecC-hHHhHHHHHH-
Confidence            56789999997    889999999998766 6899999988877888888999999999999999998 4455555543 


Q ss_pred             HHhhcCCCcEEEEcCCCCc-----cCHHHHHHHHHhCCce
Q 021361          217 VIDALGPSGILINIGRGAH-----IDEPELVSALLEGRLA  251 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg~~-----vd~~al~~al~~g~~~  251 (313)
                      ..+.=-++++++.-|-++.     ..++.|.+..++..+.
T Consensus        84 ~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir  123 (129)
T d2csua1          84 CGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (129)
T ss_dssp             HHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence            2222222344443333332     2334566666665443

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.12  E-value=6.9e-05  Score=60.77  Aligned_cols=94  Identities=13%  Similarity=0.122  Sum_probs=61.6

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccccc---------------ccccCCHHHHHhhCCeeEEecC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDAN---------------YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~---------------~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .+++||+|.|+|.|..+++++..|...| +|++++|+.++...               .....+++.....+|+++.++|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            4589999999999999999999998877 89999998764211               0012345556678999999998


Q ss_pred             CChHhh-hccCHHHHhhcCCCcEEEEcCCCC
Q 021361          205 LTEETH-HIVNRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       205 ~~~~t~-~~i~~~~l~~mk~ga~~in~~rg~  234 (313)
                      ...... ..-..-.++.++++.+++++.-.+
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p  123 (177)
T d1nvta1          93 IGMYPNIDVEPIVKAEKLREDMVVMDLIYNP  123 (177)
T ss_dssp             TTCTTCCSSCCSSCSTTCCSSSEEEECCCSS
T ss_pred             ccccccccccchhhhhccCcccceeeecCCc
Confidence            632211 100011234455666666664433

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00041  Score=56.97  Aligned_cols=64  Identities=14%  Similarity=0.158  Sum_probs=50.0

Q ss_pred             CCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcccc-----ccc-------ccCCHHHHHhhCCeeEEecCCC
Q 021361          143 SGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYK-------YYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~-------~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ..|||.|+| .|.+|+.+++.|...|++|.++.|++.+..     +..       ...+++++++.+|+|+.++...
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~   78 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence            468999999 699999999999999999999998775421     111       1245677899999999888643

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.09  E-value=0.00051  Score=60.93  Aligned_cols=84  Identities=15%  Similarity=0.228  Sum_probs=64.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHh-cCC-cEEEECCCCccc---------ccccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          145 KSVGIVGLGRIGTAIAKRVEA-FGC-PISYHSRSEKSD---------ANYKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~---------~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      +++||||.|..++.-++.+.. +.. +|.+|+|+.+..         .+.....+.++.+.+||+|+.++|   ++..++
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~---s~~P~~  202 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTP---SRKPVV  202 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCC---CSSCCB
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEecc---Cccccc
Confidence            589999999999999988864 565 599999987542         122334577888999999998876   456677


Q ss_pred             CHHHHhhcCCCcEEEEcCCCC
Q 021361          214 NRKVIDALGPSGILINIGRGA  234 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~rg~  234 (313)
                      ..+   .++||+.++.+|...
T Consensus       203 ~~~---~l~~G~hv~~iGs~~  220 (320)
T d1omoa_         203 KAE---WVEEGTHINAIGADG  220 (320)
T ss_dssp             CGG---GCCTTCEEEECSCCS
T ss_pred             chh---hcCCCCeEeecCCcc
Confidence            764   479999999998543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00063  Score=54.30  Aligned_cols=85  Identities=20%  Similarity=0.238  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccc-----ccccc-----cCCHHHHH--------hhCCeeEEec
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSD-----ANYKY-----YTNIIDLA--------SNCQILIVAC  203 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~~l~--------~~aDvv~l~~  203 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++++.     .++..     ..+..+..        ...|+++-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            36799999999999999999999999 699999877542     12211     12333322        1468887777


Q ss_pred             CCChHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          204 SLTEETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       204 p~~~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      +. +.+   + +..++.+++|..++.+|-
T Consensus       106 G~-~~~---~-~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2         106 GA-EAS---I-QAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             CC-HHH---H-HHHHHHSCTTCEEEECSC
T ss_pred             CC-chh---H-HHHHHHhcCCCEEEEEec
Confidence            53 222   1 245677888888777764

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.07  E-value=0.00047  Score=53.82  Aligned_cols=88  Identities=14%  Similarity=0.270  Sum_probs=54.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc--------------ccccCCHHHHHhhCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN--------------YKYYTNIIDLASNCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--------------~~~~~~l~~l~~~aDvv~l~~p~~~~  208 (313)
                      +||+|||.|.+|..+|-.+...+.  ++..+|+..+...+              ......-.+.++.||+|+++......
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            589999999999999999887665  79999987754211              01112234567899999998543221


Q ss_pred             ---hh-hccC---------HHHHhhcCCCcEEEEcCC
Q 021361          209 ---TH-HIVN---------RKVIDALGPSGILINIGR  232 (313)
Q Consensus       209 ---t~-~~i~---------~~~l~~mk~ga~~in~~r  232 (313)
                         ++ .++.         .+.+....|++++++++.
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence               11 1111         123444678899999854

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.06  E-value=0.0031  Score=50.03  Aligned_cols=91  Identities=12%  Similarity=0.230  Sum_probs=67.5

Q ss_pred             ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccc----------------cccccCCHHHHHhhCCeeEEec
Q 021361          141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDA----------------NYKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      +|.|++|++||=|+ +.++++..+..||+++.++.|..-...                ......++++.++.+|+|..-.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            47899999999754 678899999999999998887532211                1234578999999999888632


Q ss_pred             CCC-------hH-----hhhccCHHHHhhcCCCcEEEEcC
Q 021361          204 SLT-------EE-----THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       204 p~~-------~~-----t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      =..       +.     ....++.+.++.+|++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            111       01     12466889999999999999987

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.02  E-value=0.00084  Score=53.25  Aligned_cols=85  Identities=21%  Similarity=0.300  Sum_probs=56.7

Q ss_pred             CEEEEEcCChhHHH-HHHHHHhcC-CcE-EEECCCCccc-------cccc-ccCCHHHHH-----hhCCeeEEecCCChH
Q 021361          145 KSVGIVGLGRIGTA-IAKRVEAFG-CPI-SYHSRSEKSD-------ANYK-YYTNIIDLA-----SNCQILIVACSLTEE  208 (313)
Q Consensus       145 ~~vgiiG~G~iG~~-~a~~l~~~g-~~V-~~~~~~~~~~-------~~~~-~~~~l~~l~-----~~aDvv~l~~p~~~~  208 (313)
                      -++||||.|.||+. +.+.++.+. .++ .+.+|+....       .+.. .+.++++++     .+.|+|++++|...+
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            48999999999986 667887664 455 4557765421       1222 234466654     368899999985444


Q ss_pred             hhhccCHHHHhhcCCCcEEEEcCC
Q 021361          209 THHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ..   .+..++.++.|..+|+-+.
T Consensus        85 ~~---~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQ---NEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HH---HHHHHHHHCTTCEEEECST
T ss_pred             HH---hHHHHHHHHcCCEEEEccc
Confidence            33   3345666899999999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=0.00031  Score=56.79  Aligned_cols=144  Identities=15%  Similarity=0.118  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccccccccCCHHHHHh--hCCeeEEecCCChHhhhccCHHHHh
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVNRKVID  219 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~~l~  219 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.          ++++  .+|.++..-  ....... .++..+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~----------~~a~~lGa~~vi~~~--~~~~~~~-~~~i~~   94 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL----------KLAEEIGADLTLNRR--ETSVEER-RKAIMD   94 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH----------HHHHHTTCSEEEETT--TSCHHHH-HHHHHH
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccc----------cccccccceEEEecc--ccchHHH-HHHHHH
Confidence            58899999999999999999999998 689998876532          1111  356555422  1111111 112222


Q ss_pred             hcCC-C-cEEEEcCCCCccCHHHHHHHHHhCCceEEEccCCC-CCCCCCc--ccCCCCcEEEcCCCCCCcHHHHHHHHHH
Q 021361          220 ALGP-S-GILINIGRGAHIDEPELVSALLEGRLAGAGLDVYE-NEPEVPE--QMLGLNNVVLLPHVGSDTEETSKAMADL  294 (313)
Q Consensus       220 ~mk~-g-a~~in~~rg~~vd~~al~~al~~g~~~ga~lDV~~-~EP~~~~--~l~~~pnvi~TPHia~~t~~~~~~~~~~  294 (313)
                      .... | -+++++. |..-..+...+.++.|... ..+-+.. ++|.+-.  +..-..++.+.--.. ++.+.++++.+.
T Consensus        95 ~~~~~g~Dvvid~v-G~~~~~~~a~~~l~~~G~i-v~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~-~~~~~~~~~~~~  171 (182)
T d1vj0a2          95 ITHGRGADFILEAT-GDSRALLEGSELLRRGGFY-SVAGVAVPQDPVPFKVYEWLVLKNATFKGIWV-SDTSHFVKTVSI  171 (182)
T ss_dssp             HTTTSCEEEEEECS-SCTTHHHHHHHHEEEEEEE-EECCCCSCCCCEEECHHHHTTTTTCEEEECCC-CCHHHHHHHHHH
T ss_pred             hhCCCCceEEeecC-CchhHHHHHHHHhcCCCEE-EEEeecCCCCccccccHHHHHHCCcEEEEEEe-CCHHHHHHHHHH
Confidence            2211 1 2455553 3322234444555444322 2222322 2332212  212234555544223 455667777777


Q ss_pred             HHHHHHHH
Q 021361          295 VIENLVAH  302 (313)
Q Consensus       295 ~~~ni~~~  302 (313)
                      +.+|.+-|
T Consensus       172 i~~~~~l~  179 (182)
T d1vj0a2         172 TSRNYQLL  179 (182)
T ss_dssp             HHTCHHHH
T ss_pred             HHHChHHH
Confidence            77776543

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=96.99  E-value=0.00045  Score=58.76  Aligned_cols=70  Identities=14%  Similarity=0.135  Sum_probs=60.3

Q ss_pred             ccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          181 ANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       181 ~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .+.....+..|++++||+|++++|..+.+..++ ++..+.+++|++++|++.........+.+.+++..+.
T Consensus       127 ~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             CCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence            345567899999999999999999777777777 5688999999999999999988888898888877766

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.98  E-value=0.0012  Score=56.44  Aligned_cols=106  Identities=13%  Similarity=0.173  Sum_probs=67.0

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc---ccccc----------------------------ccCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS---DANYK----------------------------YYTN  188 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---~~~~~----------------------------~~~~  188 (313)
                      .+|.|+||.|=|+|++|+.+|+.|...|++|++.+.+...   +.+..                            ...+
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP  111 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeec
Confidence            4689999999999999999999999999998765432110   00000                            0011


Q ss_pred             HHHHH-hhCCeeEEecCCChHhhhccCHHHHhhcCC-Cc-EEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          189 IIDLA-SNCQILIVACSLTEETHHIVNRKVIDALGP-SG-ILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       189 l~~l~-~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~-ga-~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .++++ ..||+++-|     .+.+.|+.+..+.++. +. +++--+-+++ ..++....|+++.+.
T Consensus       112 ~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~-t~ea~~~ll~~~gI~  171 (255)
T d1bgva1         112 GEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPT-TNEALRFLMQQPNMV  171 (255)
T ss_dssp             TCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCB-CHHHHHHHHHCTTCE
T ss_pred             hhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCc-chHHHHHHHHhcCCE
Confidence            22222 358887643     4567788888877754 34 5565556654 444544456666665

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.97  E-value=0.0016  Score=50.61  Aligned_cols=91  Identities=20%  Similarity=0.325  Sum_probs=57.1

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-----------------ccccCCHHHHHhhCCeeEEecCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-----------------YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-----------------~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +||+|||.|.+|..+|-.|...+. ++..+|...+...+                 .....+.+ .+++||+|+++....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeeecc
Confidence            699999999999999998887665 78889987653211                 01123444 468999999988532


Q ss_pred             h--H-hh-hcc--C----H---HHHhhcCCCcEEEEcCCCCccCH
Q 021361          207 E--E-TH-HIV--N----R---KVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       207 ~--~-t~-~~i--~----~---~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                      .  . ++ .++  |    +   +.+....|++++++++  .++|.
T Consensus        81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt--NPvDv  123 (142)
T d1uxja1          81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN--NPLDA  123 (142)
T ss_dssp             ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECS--SSHHH
T ss_pred             CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC--CchHH
Confidence            2  1 11 111  1    1   1234456788999874  34444

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.96  E-value=0.0028  Score=53.61  Aligned_cols=102  Identities=21%  Similarity=0.317  Sum_probs=73.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHH-hcCCcEEEECCCCcc---c---------------------ccccccCCHHHHHh-
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKS---D---------------------ANYKYYTNIIDLAS-  194 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~-~~g~~V~~~~~~~~~---~---------------------~~~~~~~~l~~l~~-  194 (313)
                      .|.|++|.|-|+|++|..+|+.|. .+|++|++.+.+...   +                     .+.. ..+.++++. 
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~  107 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGAT-NITNEELLEL  107 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSE-EECHHHHHHS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCe-eecccccccc
Confidence            489999999999999999999985 689998765433211   0                     0111 235667665 


Q ss_pred             hCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          195 NCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       195 ~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .||+++-|.-     .+.|+.+..+.++ -.+++-.+-+++ ..++ .+.|.+..+.
T Consensus       108 ~~DIl~PcA~-----~~~I~~~~a~~i~-ak~I~e~AN~p~-t~ea-~~~L~~rgI~  156 (239)
T d1gtma1         108 EVDVLAPAAI-----EEVITKKNADNIK-AKIVAEVANGPV-TPEA-DEILFEKGIL  156 (239)
T ss_dssp             CCSEEEECSC-----SCCBCTTGGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cccEEeeccc-----cccccHHHHHhcc-ccEEEecCCCCC-CHHH-HHHHHHCCCE
Confidence            7999887663     5778888888885 357777778886 4555 5778887776

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.92  E-value=0.0015  Score=50.63  Aligned_cols=102  Identities=15%  Similarity=0.178  Sum_probs=75.1

Q ss_pred             CCCEEEEEcCC----hhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHH
Q 021361          143 SGKSVGIVGLG----RIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       143 ~g~~vgiiG~G----~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      +-|+|+|||..    ..|..+++.|+.+|++|+.+++......+...+.++.++-..-|++++++|. +.+..++.+ ..
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~~e-~~   95 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVEQ-AI   95 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHHH-HH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeCH-HHHHHHHHH-HH
Confidence            46899999965    6999999999999999999999887777877888999999899999999984 334444443 22


Q ss_pred             hhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          219 DALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       219 ~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                       .+....+++..|   ..+++. .+.+++..+.
T Consensus        96 -~~g~k~v~~~~G---~~~ee~-~~~a~~~gi~  123 (139)
T d2d59a1          96 -KKGAKVVWFQYN---TYNREA-SKKADEAGLI  123 (139)
T ss_dssp             -HHTCSEEEECTT---CCCHHH-HHHHHHTTCE
T ss_pred             -HhCCCEEEEecc---ccCHHH-HHHHHHCCCE
Confidence             244556777654   345544 4455555454

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00049  Score=53.92  Aligned_cols=41  Identities=20%  Similarity=0.440  Sum_probs=36.8

Q ss_pred             cccccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCC
Q 021361          136 FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       136 ~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      .+...+|+||++.|||.|.+|..-++.|...|++|.++++.
T Consensus         5 lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           5 LQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             chhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45567899999999999999999999999999999998754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.92  E-value=0.00097  Score=51.82  Aligned_cols=92  Identities=18%  Similarity=0.214  Sum_probs=60.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc---------------cc-ccCCHHHHHhhCCeeEEecC--C
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN---------------YK-YYTNIIDLASNCQILIVACS--L  205 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~---------------~~-~~~~l~~l~~~aDvv~l~~p--~  205 (313)
                      ||+|||.|.+|..+|..+...|.  ++..+|..+....+               .. ...+..+.+++||+|+++.-  .
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~~   81 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLPR   81 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecCC
Confidence            79999999999999999988774  79999987753210               11 11344567899999999863  2


Q ss_pred             ChH-hhh-cc--C-------HHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          206 TEE-THH-IV--N-------RKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       206 ~~~-t~~-~i--~-------~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      .+. ++. ++  |       .+.+....|++++++++.  ++|.-
T Consensus        82 ~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN--Pvd~~  124 (142)
T d1guza1          82 KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDIM  124 (142)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC--ChHHH
Confidence            221 111 11  1       123344568999999854  45543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.87  E-value=0.00027  Score=56.41  Aligned_cols=34  Identities=32%  Similarity=0.585  Sum_probs=31.5

Q ss_pred             EEEEE-cCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          146 SVGIV-GLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       146 ~vgii-G~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      ||+|| |.|.||+.+|+.|...|++|.+++|++++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK   36 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            79999 78999999999999999999999998754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.86  E-value=0.0011  Score=52.20  Aligned_cols=90  Identities=17%  Similarity=0.235  Sum_probs=58.8

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCccccc-------------cc--c-cCCHHHHHhhCCeeEEecCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDAN-------------YK--Y-YTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~-------------~~--~-~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ..||+|||.|.+|..+|..+...+. ++..||+..+...+             ..  . ..+..+.++.||+|+++....
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            3689999999999999988876665 68899987653211             00  0 123456678999999987642


Q ss_pred             hH---h-----h-hcc--CH-------HHHhhcCCCcEEEEcCCC
Q 021361          207 EE---T-----H-HIV--NR-------KVIDALGPSGILINIGRG  233 (313)
Q Consensus       207 ~~---t-----~-~~i--~~-------~~l~~mk~ga~~in~~rg  233 (313)
                      ..   +     + .++  |.       +.+....|++++++++..
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            21   1     1 111  11       124445689999998643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.84  E-value=0.00074  Score=52.49  Aligned_cols=91  Identities=24%  Similarity=0.407  Sum_probs=58.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhcC--CcEEEECCCCccccc--------------ccccCCHHHHHhhCCeeEEecCCCh--
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFG--CPISYHSRSEKSDAN--------------YKYYTNIIDLASNCQILIVACSLTE--  207 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~--------------~~~~~~l~~l~~~aDvv~l~~p~~~--  207 (313)
                      ||+|||.|.+|..+|-.+...+  .++..+|...+...+              .....+..+.++.||+|+++.....  
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~~   81 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQKP   81 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccCC
Confidence            7999999999999999887655  479999987643211              1112233445889999999864321  


Q ss_pred             -Hhh-hcc--C-------HHHHhhcCCCcEEEEcCCCCccCH
Q 021361          208 -ETH-HIV--N-------RKVIDALGPSGILINIGRGAHIDE  238 (313)
Q Consensus       208 -~t~-~~i--~-------~~~l~~mk~ga~~in~~rg~~vd~  238 (313)
                       .++ .++  |       .+.+....|++++++++  .++|.
T Consensus        82 g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt--NPvd~  121 (140)
T d1a5za1          82 GETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT--NPVDV  121 (140)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHH
T ss_pred             CcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC--CcHHH
Confidence             111 111  1       13445567899999986  44444

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.83  E-value=0.00039  Score=55.68  Aligned_cols=61  Identities=20%  Similarity=0.344  Sum_probs=44.6

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcccc------cccccCCHHHHHhhCCeeEEecCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKSDA------NYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~------~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      ++++|.|+|.|..|++++..|+..|+ +|.+++|+.++..      +.....+..  ..++|+|+.++|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence            57899999999999999999999998 6999999876421      111111111  2467888888774

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.82  E-value=0.0048  Score=48.65  Aligned_cols=98  Identities=11%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             cCCCEEEEEcC--ChhHHHHHHHHHhcCCcEEEECCCCccc----------------ccccccCCHHHHHhhCCeeEEec
Q 021361          142 FSGKSVGIVGL--GRIGTAIAKRVEAFGCPISYHSRSEKSD----------------ANYKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       142 l~g~~vgiiG~--G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------------~~~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      |.|++|++||=  .++-++++..+..||+++..+.|..-..                .......++++.++.+|+|..-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            67999999994  5799999999999999999888754211                01234578999999999998744


Q ss_pred             CCChH------------hhhccCHH-HHhhcCCCcEEEEcC---CCCccCHH
Q 021361          204 SLTEE------------THHIVNRK-VIDALGPSGILINIG---RGAHIDEP  239 (313)
Q Consensus       204 p~~~~------------t~~~i~~~-~l~~mk~ga~~in~~---rg~~vd~~  239 (313)
                      -....            ....+... ....+|++++|.-+.   ||.=|+.+
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~~  132 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  132 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccchh
Confidence            32110            11222333 344578899999876   55544443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.79  E-value=0.00064  Score=54.72  Aligned_cols=37  Identities=22%  Similarity=0.245  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|++.++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r   64 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC   64 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhh
Confidence            47799999999999999999999998 69999987653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.79  E-value=0.0006  Score=54.03  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~   63 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAK   63 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhH
Confidence            3789999999999999999999999999999987653

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.78  E-value=0.00047  Score=54.90  Aligned_cols=102  Identities=10%  Similarity=0.133  Sum_probs=63.7

Q ss_pred             EEEEEcCChhHHH-HHHHHHhc-CCcEEEECCCCccc------cc-ccccCCHHHHHh-hCCeeEEecCCChHhhhccCH
Q 021361          146 SVGIVGLGRIGTA-IAKRVEAF-GCPISYHSRSEKSD------AN-YKYYTNIIDLAS-NCQILIVACSLTEETHHIVNR  215 (313)
Q Consensus       146 ~vgiiG~G~iG~~-~a~~l~~~-g~~V~~~~~~~~~~------~~-~~~~~~l~~l~~-~aDvv~l~~p~~~~t~~~i~~  215 (313)
                      +|||||+|.+|+. ....++.. ++++.++|++++..      .+ ...+.+.+++++ +.|+|++++|...+..  +-.
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~--~~~   80 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST--LAA   80 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH--HHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccc--ccc
Confidence            7999999999976 56777665 56778898876432      11 223567778775 5799999998644433  223


Q ss_pred             HHHhhcCCCcEEEEc-CCCCccCHHHHHHHHHhCCce
Q 021361          216 KVIDALGPSGILINI-GRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       216 ~~l~~mk~ga~~in~-~rg~~vd~~al~~al~~g~~~  251 (313)
                      ..++. .. .+|+.- .--.+-+.+.|.++.++.++.
T Consensus        81 ~al~~-gk-~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          81 FFLHL-GI-PTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHT-TC-CEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             ccccc-cc-ccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            33332 22 255432 223334556788877766654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00054  Score=54.60  Aligned_cols=37  Identities=35%  Similarity=0.568  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+++.++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~   66 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAK   66 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhH
Confidence            4789999999999999999999999998888876653

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0047  Score=49.11  Aligned_cols=91  Identities=13%  Similarity=0.141  Sum_probs=66.7

Q ss_pred             ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccc--------------c--ccccCCHHHHHhhCCeeEEec
Q 021361          141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDA--------------N--YKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      +|.|++|++||=|+ +-++++..+..+|+++.++.+..-...              +  .....++++.+..+|+|....
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            47899999999764 557777778889999988887543210              1  224578999999999998765


Q ss_pred             CCChH------------hhhccCHHHHhhcCCCcEEEEcC
Q 021361          204 SLTEE------------THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       204 p~~~~------------t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      -....            ....++.+.++.++++++|..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            43221            12346778889999999999987

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.74  E-value=0.0018  Score=50.02  Aligned_cols=102  Identities=17%  Similarity=0.174  Sum_probs=73.0

Q ss_pred             CCCEEEEEcC----ChhHHHHHHHHHhcCCcEEEECCCCc--ccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHH
Q 021361          143 SGKSVGIVGL----GRIGTAIAKRVEAFGCPISYHSRSEK--SDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRK  216 (313)
Q Consensus       143 ~g~~vgiiG~----G~iG~~~a~~l~~~g~~V~~~~~~~~--~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~  216 (313)
                      +-|+|+|||.    +..|..+++.|+.+|+++..+.+.+.  ...+...+.++.++-..-|++++++| .+.+..++.+ 
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~~-   89 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLPE-   89 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHHH-
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEecc-HHHHHHHHHH-
Confidence            4579999998    67999999999999999999987653  33556667889999888999999998 3445555543 


Q ss_pred             HHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          217 VIDALGPSGILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       217 ~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      .. .+...++++..|   ..++++. +..++..+.
T Consensus        90 ~~-~~g~k~i~~q~G---~~~~e~~-~~a~~~Gi~  119 (136)
T d1iuka_          90 VL-ALRPGLVWLQSG---IRHPEFE-KALKEAGIP  119 (136)
T ss_dssp             HH-HHCCSCEEECTT---CCCHHHH-HHHHHTTCC
T ss_pred             HH-hhCCCeEEEecC---ccCHHHH-HHHHHcCCE
Confidence            22 345667887654   3555554 444444443

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.73  E-value=0.0036  Score=49.06  Aligned_cols=90  Identities=14%  Similarity=0.185  Sum_probs=64.0

Q ss_pred             cCCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCCCccc----------ccccccCCHHHHHhhCCeeEEecCCCh-
Q 021361          142 FSGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRSEKSD----------ANYKYYTNIIDLASNCQILIVACSLTE-  207 (313)
Q Consensus       142 l~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------~~~~~~~~l~~l~~~aDvv~l~~p~~~-  207 (313)
                      |.|++|++||=   |++.++++..+..+|+++.++.+.....          .......++++.++++|+|..---... 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            57999999996   5599999999999999976544432211          123345789999999998875321100 


Q ss_pred             ----------HhhhccCHHHHhhcCCCcEEEEcC
Q 021361          208 ----------ETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       208 ----------~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                                .....++.+.++.++++++|..+.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence                      012246788889999999999886

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.68  E-value=0.00064  Score=54.15  Aligned_cols=92  Identities=17%  Similarity=0.292  Sum_probs=60.8

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc----------c-----cccCCHHHHHhhCCeeEEec
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN----------Y-----KYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----------~-----~~~~~l~~l~~~aDvv~l~~  203 (313)
                      .+..+||+|||.|.+|..+|-.|...|.  ++..+|...+...+          .     .....-.+.+++||+|+++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            4667899999999999999999998887  79999987543211          0     01123345678999999976


Q ss_pred             CCCh---Hhhh-ccC---------HHHHhhcCCCcEEEEcCC
Q 021361          204 SLTE---ETHH-IVN---------RKVIDALGPSGILINIGR  232 (313)
Q Consensus       204 p~~~---~t~~-~i~---------~~~l~~mk~ga~~in~~r  232 (313)
                      ....   .++- ++.         ...+....+++++++++.
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            5422   1221 111         123344578899999854

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.65  E-value=0.0024  Score=51.64  Aligned_cols=61  Identities=18%  Similarity=0.215  Sum_probs=43.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhc-CCcEEEE-CCCCcccc-----------------------cccccCCHHHHHhhCCeeE
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF-GCPISYH-SRSEKSDA-----------------------NYKYYTNIIDLASNCQILI  200 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~-g~~V~~~-~~~~~~~~-----------------------~~~~~~~l~~l~~~aDvv~  200 (313)
                      +|||.|||+||+.+++.+... +++|.++ |+.+....                       +.....++.++.+++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999999865 4677655 44433210                       0111246778888899999


Q ss_pred             EecCCC
Q 021361          201 VACSLT  206 (313)
Q Consensus       201 l~~p~~  206 (313)
                      -|+|.-
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            999864

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.60  E-value=0.00097  Score=52.66  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++..|.+|++.+++.++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r   63 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEK   63 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHH
Confidence            4789999999999999999999999999999887654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0028  Score=50.49  Aligned_cols=36  Identities=31%  Similarity=0.448  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.+|.|+|. |.+|....+.++.+|++|++.+++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~   64 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE   64 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccc
Confidence            5889999995 99999999999999999988877654

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=96.52  E-value=0.0025  Score=50.07  Aligned_cols=61  Identities=18%  Similarity=0.351  Sum_probs=48.9

Q ss_pred             CCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCCCccc--ccccccCCHHHHHhhCCeeEEec
Q 021361          143 SGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRSEKSD--ANYKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       143 ~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~~--~~~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      .|.+|++||=   +++.++++..+..+|+++.+..|..-..  .......++++.++.+|+|..-.
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeeeE
Confidence            5899999996   6899999999999999998888765322  22344678999999999987643

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.52  E-value=0.0019  Score=51.93  Aligned_cols=102  Identities=12%  Similarity=0.102  Sum_probs=62.5

Q ss_pred             CEEEEEcCChhHHH-HHHHHHhcC--CcEE-EECCCCcccc------c-ccccCCHHHHHhh--CCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTA-IAKRVEAFG--CPIS-YHSRSEKSDA------N-YKYYTNIIDLASN--CQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~-~a~~l~~~g--~~V~-~~~~~~~~~~------~-~~~~~~l~~l~~~--aDvv~l~~p~~~~t~~  211 (313)
                      -++||||+|.+|+. .+..++.++  ++|. ++|++.+...      + ...+.+++++++.  .|+|++++|...+.. 
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~-   82 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP-   82 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH-
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc-
Confidence            47999999999987 477787654  4554 6788764321      1 2346899999874  788999998643332 


Q ss_pred             ccCHHHHhhcCCC-cEEEEc-CCCCccCHHHHHHHHHhCCce
Q 021361          212 IVNRKVIDALGPS-GILINI-GRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       212 ~i~~~~l~~mk~g-a~~in~-~rg~~vd~~al~~al~~g~~~  251 (313)
                       +-...   ++.| .+++.- ---.+-+...|.+..++.+..
T Consensus        83 -~~~~a---l~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          83 -FIEKA---LRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             -HHHHH---HHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             -ccccc---cccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence             22223   3333 344432 122334445577777665544

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.52  E-value=0.0029  Score=49.27  Aligned_cols=93  Identities=13%  Similarity=0.281  Sum_probs=60.2

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCcccc-------c-------ccccCCHHHHHhhCCeeEEecCC--
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSDA-------N-------YKYYTNIIDLASNCQILIVACSL--  205 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~-------~-------~~~~~~l~~l~~~aDvv~l~~p~--  205 (313)
                      .||+|||. |.+|..+|-.|...|.  ++..+|.......       .       .....+..+.++.||+|+++...  
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            38999995 9999999999998776  5888887543210       0       01124567889999999997653  


Q ss_pred             Ch-Hhhh-ccC---------HHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          206 TE-ETHH-IVN---------RKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       206 ~~-~t~~-~i~---------~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      .+ .++. ++.         .+.+....|.++++.++  .++|.-
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt--NPvD~~  123 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNST  123 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec--Cchhhh
Confidence            22 1111 111         12334457889999984  456643

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.33  E-value=0.0045  Score=49.57  Aligned_cols=63  Identities=16%  Similarity=0.198  Sum_probs=41.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC-CcEEEE-CCCCccc------cc------------------ccccCCHHHHHhhCCe
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG-CPISYH-SRSEKSD------AN------------------YKYYTNIIDLASNCQI  198 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g-~~V~~~-~~~~~~~------~~------------------~~~~~~l~~l~~~aDv  198 (313)
                      ++|||-|||+||+.+.+.+...+ ++|... ++.+...      .+                  .....+..++++++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            48999999999999999887654 566544 4433211      00                  0111256677788888


Q ss_pred             eEEecCCCh
Q 021361          199 LIVACSLTE  207 (313)
Q Consensus       199 v~l~~p~~~  207 (313)
                      |+-|+|.-.
T Consensus        82 ViEcTG~f~   90 (171)
T d1cf2o1          82 VIDCTPEGI   90 (171)
T ss_dssp             EEECCSTTH
T ss_pred             EEEccCCCC
Confidence            888887643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.30  E-value=0.0017  Score=51.85  Aligned_cols=36  Identities=19%  Similarity=0.186  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcE-EEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPI-SYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V-~~~~~~~~  178 (313)
                      .|.+|.|+|.|.+|...++.++.+|+++ ++.++++.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~   64 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES   64 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH
Confidence            5889999999999999999999999975 55676654

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.26  E-value=0.0081  Score=48.50  Aligned_cols=91  Identities=10%  Similarity=0.063  Sum_probs=64.9

Q ss_pred             ccCCCEEEEEcC--ChhHHHHHHHHHhcCCcEEEECCCCccc----------------ccccccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGL--GRIGTAIAKRVEAFGCPISYHSRSEKSD----------------ANYKYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~--G~iG~~~a~~l~~~g~~V~~~~~~~~~~----------------~~~~~~~~l~~l~~~aDvv~l~  202 (313)
                      .|.|.+|++||=  -++.++++..+..||+++.++.|..-..                .......++++.++.+|+|..-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            488999999994  4899999999999999999998854211                1123457899999999998764


Q ss_pred             cCCC----hH---------hhhccC-HHHHhhcCCCcEEEEcC
Q 021361          203 CSLT----EE---------THHIVN-RKVIDALGPSGILINIG  231 (313)
Q Consensus       203 ~p~~----~~---------t~~~i~-~~~l~~mk~ga~~in~~  231 (313)
                      .=..    ..         ....+. ...+..+|++++|..+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            4211    00         012333 33445678999999887

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.24  E-value=0.0061  Score=47.74  Aligned_cols=91  Identities=18%  Similarity=0.182  Sum_probs=64.7

Q ss_pred             ccCCCEEEEEcC---ChhHHHHHHHHHhcCCcEEEECCCCcccc------------cccccCCHHHHHhhCCeeEEecCC
Q 021361          141 KFSGKSVGIVGL---GRIGTAIAKRVEAFGCPISYHSRSEKSDA------------NYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~~~------------~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      .|.|++|++||=   +++.++++..+..+|+++.++.|......            ....+.++++.++.+|+|....-.
T Consensus         1 kl~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~~   80 (157)
T d1ml4a2           1 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ   80 (157)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CcCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeeccc
Confidence            378999999998   68999999999999999988887543211            122357899999999988775432


Q ss_pred             ChH-----------hhhccCHHHHhhcCCCcEEEEcC
Q 021361          206 TEE-----------THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       206 ~~~-----------t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ...           ....++.+.++.+++++++.-..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHpl  117 (157)
T d1ml4a2          81 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  117 (157)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             cccccchhhHHhhcchhccCHHHHhhcCCCeEEecCC
Confidence            111           01123456667777777777766

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.21  E-value=0.0022  Score=49.78  Aligned_cols=92  Identities=21%  Similarity=0.242  Sum_probs=59.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc-----------c------cccCCHHHHHhhCCeeEEecCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN-----------Y------KYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~-----------~------~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      ||+|||.|.+|..+|-.+...|.  ++..+|...+...+           .      ....+ .+.+++||+|++.....
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~~   80 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGLA   80 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEecccc
Confidence            79999999999999999987775  69999987643211           0      01123 36888999999977432


Q ss_pred             --hH-hh-hcc--C-------HHHHhhcCCCcEEEEcCCCCccCHHH
Q 021361          207 --EE-TH-HIV--N-------RKVIDALGPSGILINIGRGAHIDEPE  240 (313)
Q Consensus       207 --~~-t~-~~i--~-------~~~l~~mk~ga~~in~~rg~~vd~~a  240 (313)
                        +. ++ .++  |       .+.+....|++++++++-  ++|.-.
T Consensus        81 ~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN--PvD~~t  125 (142)
T d1ojua1          81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN--PMDVMT  125 (142)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS--SHHHHH
T ss_pred             CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC--ChHHHH
Confidence              21 11 111  1       123444567899999865  444433

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.20  E-value=0.0018  Score=46.87  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCChhH-HHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIG-TAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG-~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +.+++=|||.|.+| .++|+.|+..|++|.++|....
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            56899999999999 6779999999999999998653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.19  E-value=0.0021  Score=50.01  Aligned_cols=92  Identities=12%  Similarity=0.285  Sum_probs=59.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc----------------ccccCCHHHHHhhCCeeEEecCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN----------------YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----------------~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      .||+|||.|.+|..+|-.+...|.  ++..+|..++...+                .....+. +.+++||+|+++.-..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence            489999999999999998886665  79999987643211                0112344 4588999999977532


Q ss_pred             h---Hhh-hcc--C-------HHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          207 E---ETH-HIV--N-------RKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       207 ~---~t~-~~i--~-------~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      .   .++ .++  |       ...+....|++++++++  .++|.=
T Consensus        81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt--NPvDvm  124 (143)
T d1llda1          81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT--NPVDIA  124 (143)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHHH
T ss_pred             cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC--CchHHH
Confidence            2   111 111  1       12344467888999885  455543

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.14  E-value=0.0014  Score=52.06  Aligned_cols=91  Identities=16%  Similarity=0.266  Sum_probs=59.0

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCccccc-------------c---cccCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN-------------Y---KYYTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~-------------~---~~~~~l~~l~~~aDvv~l~  202 (313)
                      .++..||+|||.|.+|..+|-.|...|.  ++..+|...+...+             .   ....+. +.+++||+|+++
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvit   94 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIIT   94 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEe
Confidence            4566799999999999999999987775  69999987543110             0   012343 455899999987


Q ss_pred             cCCC--h-Hhhh-cc--CHH-------HHhhcCCCcEEEEcCC
Q 021361          203 CSLT--E-ETHH-IV--NRK-------VIDALGPSGILINIGR  232 (313)
Q Consensus       203 ~p~~--~-~t~~-~i--~~~-------~l~~mk~ga~~in~~r  232 (313)
                      ....  + .++. ++  |.+       .+....|++++++++.
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            6432  1 1221 11  111       2334578899999865

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.14  E-value=0.0029  Score=50.18  Aligned_cols=60  Identities=8%  Similarity=0.079  Sum_probs=41.6

Q ss_pred             EEEEEcCChhHHHHHHH--HHh---c-CCcEEEECCCCcccc--------------cccccCCHHHHHhhCCeeEEecCC
Q 021361          146 SVGIVGLGRIGTAIAKR--VEA---F-GCPISYHSRSEKSDA--------------NYKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~--l~~---~-g~~V~~~~~~~~~~~--------------~~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      ||.|||.|++|...+-.  ++.   + +-++..+|..+++..              ......+.++.++.||+|+++.-.
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~~   81 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRP   81 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCCT
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEeccc
Confidence            79999999998766532  222   2 247999998765321              012246788999999999998754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.00  E-value=0.0037  Score=49.72  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=32.6

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|.+|.|.|. |.+|...++.++.+|++|++.++++++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~   64 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEK   64 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccc
Confidence            4789999995 999999999999999999988876653

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.95  E-value=0.011  Score=47.20  Aligned_cols=61  Identities=15%  Similarity=0.274  Sum_probs=42.7

Q ss_pred             CCEEEEEcCChhHHHHHH---HHH--hc-CCcEEEECCCCcccc-----------------cccccCCHHHHHhhCCeeE
Q 021361          144 GKSVGIVGLGRIGTAIAK---RVE--AF-GCPISYHSRSEKSDA-----------------NYKYYTNIIDLASNCQILI  200 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~---~l~--~~-g~~V~~~~~~~~~~~-----------------~~~~~~~l~~l~~~aDvv~  200 (313)
                      +-||+|||.|++|...+-   .++  .+ +.++..+|..++...                 ......+.++.++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            358999999999976432   332  23 358999999865321                 0122468999999999999


Q ss_pred             EecC
Q 021361          201 VACS  204 (313)
Q Consensus       201 l~~p  204 (313)
                      ++..
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.93  E-value=0.0034  Score=44.73  Aligned_cols=34  Identities=26%  Similarity=0.314  Sum_probs=30.4

Q ss_pred             CEEEEEcCChhHH-HHHHHHHhcCCcEEEECCCCc
Q 021361          145 KSVGIVGLGRIGT-AIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       145 ~~vgiiG~G~iG~-~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+|=|||.|.+|. ++|+.|+..|+.|.++|+...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~   36 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET   36 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            5788999999994 889999999999999998753

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.92  E-value=0.0032  Score=50.02  Aligned_cols=85  Identities=18%  Similarity=0.193  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCccc-----ccccc-----cCCHHHHHh-----hCCeeEEecCCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKSD-----ANYKY-----YTNIIDLAS-----NCQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~-----~~~~~-----~~~l~~l~~-----~aDvv~l~~p~~  206 (313)
                      .|.+|.|+|.|.+|...++.++.+|.+ |.+.++++++.     .+...     ....++..+     ..|+++-++...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            378999999999999999999999974 67777766432     11110     011222222     256666666432


Q ss_pred             hHhhhccCHHHHhhcCCCcEEEEcCC
Q 021361          207 EETHHIVNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga~~in~~r  232 (313)
                      ..    + ...++.++++..++.+|-
T Consensus       112 ~~----~-~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         112 AT----V-DYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             HH----H-HHGGGGEEEEEEEEECCC
T ss_pred             hH----H-HHHHHHHhCCCEEEEEeC
Confidence            21    1 234566777777777653

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.91  E-value=0.0075  Score=47.99  Aligned_cols=62  Identities=5%  Similarity=0.039  Sum_probs=42.8

Q ss_pred             CEEEEEcCChhH--HHHHHHHHhc---C-CcEEEECCCCcccc---------------c----ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGLGRIG--TAIAKRVEAF---G-CPISYHSRSEKSDA---------------N----YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~G~iG--~~~a~~l~~~---g-~~V~~~~~~~~~~~---------------~----~~~~~~l~~l~~~aDvv  199 (313)
                      .||.|||.|++|  ..++..++..   . .++..+|..++...               +    ....++..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            379999999876  4555555533   2 37899998764310               0    11246788899999999


Q ss_pred             EEecCCC
Q 021361          200 IVACSLT  206 (313)
Q Consensus       200 ~l~~p~~  206 (313)
                      +++....
T Consensus        82 v~ta~~~   88 (169)
T d1s6ya1          82 TTQFRVG   88 (169)
T ss_dssp             EECCCTT
T ss_pred             EEccccC
Confidence            9998654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.90  E-value=0.0019  Score=53.80  Aligned_cols=103  Identities=15%  Similarity=0.144  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCChhHHH-HHHHHHhc-CCcEE-EECCCCcccc------c-----ccccCCHHHHHh--hCCeeEEecCCC
Q 021361          143 SGKSVGIVGLGRIGTA-IAKRVEAF-GCPIS-YHSRSEKSDA------N-----YKYYTNIIDLAS--NCQILIVACSLT  206 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~------~-----~~~~~~l~~l~~--~aDvv~l~~p~~  206 (313)
                      +--+|||||+|.+|+. .+..++.. +++|. ++|++++...      +     ...+.+++++++  +.|+|++++|..
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence            3458999999999974 66666654 67765 7788765321      1     123578999886  578999999864


Q ss_pred             hHhhhccCHHHHhhcCCCc-EEEEc-CCCCccCHHHHHHHHHhCCc
Q 021361          207 EETHHIVNRKVIDALGPSG-ILINI-GRGAHIDEPELVSALLEGRL  250 (313)
Q Consensus       207 ~~t~~~i~~~~l~~mk~ga-~~in~-~rg~~vd~~al~~al~~g~~  250 (313)
                      .+..  +-   ...|+.|. +++.- --..+-+...|.+..++.+.
T Consensus       112 ~H~~--~~---~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~  152 (221)
T d1h6da1         112 LHAE--FA---IRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK  152 (221)
T ss_dssp             GHHH--HH---HHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred             hhhh--HH---HHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCC
Confidence            3332  22   22334443 33321 12233444556665555443

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0092  Score=54.59  Aligned_cols=95  Identities=17%  Similarity=0.210  Sum_probs=63.7

Q ss_pred             HHcCCCcCCCcccc-----cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc-------------ccc----
Q 021361          126 VKSGKWKNGHFELG-----SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS-------------DAN----  182 (313)
Q Consensus       126 ~~~~~w~~~~~~~~-----~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~-------------~~~----  182 (313)
                      .|.|.+.+..+..|     ..|++.+|.|||+|.+|..+++.|...|. ++..+|...-.             ..+    
T Consensus        14 ~r~~~~~~~~~~~~~e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka   93 (426)
T d1yovb1          14 ERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKA   93 (426)
T ss_dssp             HSCCTTCCTTCCCCSSHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHH
T ss_pred             hcCCCCcCcccccChHHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHH
Confidence            45666654333323     23688999999999999999999999998 68888854311             000    


Q ss_pred             -------------cc-------ccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhc
Q 021361          183 -------------YK-------YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDAL  221 (313)
Q Consensus       183 -------------~~-------~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~m  221 (313)
                                   ..       .....+++++++|+|+.++- +..++..+++..+...
T Consensus        94 ~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~  151 (426)
T d1yovb1          94 EVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLL  151 (426)
T ss_dssp             HHHHHHHHHHSTTCCCEEECSCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhCCCCceEeeeccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhh
Confidence                         00       01223578899999888774 6677888887665443

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.0031  Score=50.14  Aligned_cols=102  Identities=14%  Similarity=0.135  Sum_probs=58.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcC-C-cEEEEC---CCCcccccccccCCHHHHHh--hCCeeEEecCCChHhhhccCHHHH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFG-C-PISYHS---RSEKSDANYKYYTNIIDLAS--NCQILIVACSLTEETHHIVNRKVI  218 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g-~-~V~~~~---~~~~~~~~~~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~~l  218 (313)
                      +|||||+|.+|+..++.++... . .+.+++   +............++++++.  +.|+|++++|...+..  +-...+
T Consensus         9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~--~~~~al   86 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESSSHED--YIRQFL   86 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHH--HHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCcchhhhccccccccc--cccccc
Confidence            8999999999999888887543 1 233333   22211112222458999987  4688999998643322  333333


Q ss_pred             hhcCCCcEEEEc-CCCCccCHHHHHHHHHhCCce
Q 021361          219 DALGPSGILINI-GRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       219 ~~mk~ga~~in~-~rg~~vd~~al~~al~~g~~~  251 (313)
                      +.=|  .+++.- ---.+-+.+.|.+..++.+..
T Consensus        87 ~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          87 QAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             ccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            3222  355542 123445566677766555443

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.88  E-value=0.0056  Score=49.00  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=25.0

Q ss_pred             CEEEEEcCChhHHHHHHHHHhc-CCcEEE-ECCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAF-GCPISY-HSRSE  177 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~-g~~V~~-~~~~~  177 (313)
                      .+|||.|||+||+.+++.+... .++|.. .|+.+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~   37 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKP   37 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSC
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCC
Confidence            4899999999999999988754 456654 44443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.85  E-value=0.022  Score=45.24  Aligned_cols=37  Identities=19%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.++++++
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK   65 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH
Confidence            578999999999999999999999995 7788887754

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.019  Score=44.47  Aligned_cols=102  Identities=14%  Similarity=0.248  Sum_probs=57.9

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhc-C---CcEEEECCCCcc--cccc-----ccc-CCHHHHHhhCCeeEEecCCChHhhh
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAF-G---CPISYHSRSEKS--DANY-----KYY-TNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~-g---~~V~~~~~~~~~--~~~~-----~~~-~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      |+|||||. |.+|+.+.++|... .   .++..+..+...  ....     ... ..-.+.++++|++++++|.....+ 
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~-   80 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNE-   80 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHH-
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHH-
Confidence            58999998 99999999866532 2   245555433221  1111     111 112235789999999998533222 


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCc-----------cCHHHHHHHHHhCC
Q 021361          212 IVNRKVIDALGPSGILINIGRGAH-----------IDEPELVSALLEGR  249 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~-----------vd~~al~~al~~g~  249 (313)
                       +-. .+..-..+.++|+.|..--           |+.+.|..++++|.
T Consensus        81 -~~~-~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~  127 (146)
T d1t4ba1          81 -IYP-KLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI  127 (146)
T ss_dssp             -HHH-HHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             -hhH-HHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC
Confidence             222 2222334467888874322           34556777777654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.70  E-value=0.14  Score=42.18  Aligned_cols=125  Identities=16%  Similarity=0.195  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCc---
Q 021361          103 DVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEK---  178 (313)
Q Consensus       103 ~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~---  178 (313)
                      .+|--+++-+|+..|-.                   ++.|++.++.|+|.|..|-.+|+.+...|.+ ++.+|+..-   
T Consensus         4 GTaaV~LAgll~a~~~~-------------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~   64 (222)
T d1vl6a1           4 GTAVVVSAAFLNALKLT-------------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNE   64 (222)
T ss_dssp             HHHHHHHHHHHHHHHHH-------------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCT
T ss_pred             hHHHHHHHHHHHHHHHh-------------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEc
Confidence            35666778888876632                   4568999999999999999999999988885 888887621   


Q ss_pred             --cc---cc-----------ccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHH
Q 021361          179 --SD---AN-----------YKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELV  242 (313)
Q Consensus       179 --~~---~~-----------~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~  242 (313)
                        ..   ..           .....++.+++..++++...-     +.+++.++.+..|.+..++.=.|....--+..  
T Consensus        65 ~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--  137 (222)
T d1vl6a1          65 NDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--  137 (222)
T ss_dssp             TSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--
T ss_pred             CcccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--
Confidence              00   00           112357889999998766533     47788888999999999999998876654443  


Q ss_pred             HHHHhCCceEE
Q 021361          243 SALLEGRLAGA  253 (313)
Q Consensus       243 ~al~~g~~~ga  253 (313)
                      .+-..|+...+
T Consensus       138 ~a~~~G~ai~A  148 (222)
T d1vl6a1         138 LAREAGAFIVA  148 (222)
T ss_dssp             HHHHTTCSEEE
T ss_pred             hheeccceEEe
Confidence            34456776533

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.66  E-value=0.0067  Score=51.57  Aligned_cols=38  Identities=29%  Similarity=0.453  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|+||++-|.| -+.||+++|+.|...|++|...+|+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK   41 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999999 566999999999999999999998764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0072  Score=45.32  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      +++.|||.|.||-.+|..|..+|++|..+.+.+.-
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            79999999999999999999999999999887654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.62  E-value=0.007  Score=45.10  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=33.0

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .++|.|||.|.+|-.+|..|..+|.+|+.+.+...-
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            479999999999999999999999999999987653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.60  E-value=0.028  Score=44.61  Aligned_cols=37  Identities=19%  Similarity=0.337  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|++.++
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            58899999999999999999999996 69999998765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.01  Score=45.97  Aligned_cols=81  Identities=9%  Similarity=0.085  Sum_probs=52.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc---------ccccc----cCCHHHH----HhhCCeeEEecCCChH
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD---------ANYKY----YTNIIDL----ASNCQILIVACSLTEE  208 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~  208 (313)
                      ++-|+|+|.+|+.+++.|...|.+|++.+..++..         .++..    ..+.+-+    +.+||.++++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            58999999999999999999999999888765321         12211    1222222    4578888888875433


Q ss_pred             hhhccCHHHHhhcCCCcEEE
Q 021361          209 THHIVNRKVIDALGPSGILI  228 (313)
Q Consensus       209 t~~~i~~~~l~~mk~ga~~i  228 (313)
                      +  +.-....+.+.|...+|
T Consensus        85 n--~~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          85 N--AFVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             H--HHHHHHHHHHTSSSCEE
T ss_pred             H--HHHHHHHHHhCCCCceE
Confidence            3  33333445555554333

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0065  Score=50.93  Aligned_cols=39  Identities=21%  Similarity=0.228  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +.|+||++-|-|.+. ||+++|+.|...|++|+..+|+.+
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            469999999999876 999999999999999999998764

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.018  Score=44.56  Aligned_cols=92  Identities=14%  Similarity=0.228  Sum_probs=57.2

Q ss_pred             EEEEEcC-ChhHHHHHHHHH-h--cCCcEEEECCCCccc--------cc--cc----ccCCHHHHHhhCCeeEEecCC--
Q 021361          146 SVGIVGL-GRIGTAIAKRVE-A--FGCPISYHSRSEKSD--------AN--YK----YYTNIIDLASNCQILIVACSL--  205 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~-~--~g~~V~~~~~~~~~~--------~~--~~----~~~~l~~l~~~aDvv~l~~p~--  205 (313)
                      ||+|||. |.+|..+|-.|. .  ++.++..+|..+...        ..  ..    ...+..+.++.||+|+++.-.  
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~~   81 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVRR   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCCC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCccC
Confidence            7999995 999999998875 3  456898899754321        00  00    113345578899999998743  


Q ss_pred             ChH-hh-hcc--C-------HHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          206 TEE-TH-HIV--N-------RKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       206 ~~~-t~-~~i--~-------~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                      .+. ++ .++  |       .+.+....|++++|.++  .++|.-
T Consensus        82 k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt--NPvD~m  124 (145)
T d2cmda1          82 KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTT  124 (145)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SSHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc--CCchHH
Confidence            221 11 122  1       23345567889999984  445543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.56  E-value=0.0072  Score=44.75  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=32.7

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .+++.|||.|.+|-.+|..+..+|.+|..+.+...-
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            379999999999999999999999999999887653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0043  Score=52.46  Aligned_cols=40  Identities=20%  Similarity=0.293  Sum_probs=36.0

Q ss_pred             cccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          140 SKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      +.|+||++-|-|.+. ||+.+|+.|...|++|+..+|+.++
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            469999999999877 9999999999999999999997653

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.51  E-value=0.019  Score=42.08  Aligned_cols=60  Identities=10%  Similarity=0.039  Sum_probs=47.2

Q ss_pred             CCEEEEEcCC----------hhHHHHHHHHHhcCCcEEEECCCCcccc---cccccCCHHHHHhhCCeeEEec
Q 021361          144 GKSVGIVGLG----------RIGTAIAKRVEAFGCPISYHSRSEKSDA---NYKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       144 g~~vgiiG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~---~~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      .|+|||+|+-          +-.-.+.+.|...|++|.+|||......   ......++++++..||+|++..
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII~~~   87 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNR   87 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECSS
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEEEcC
Confidence            4689999983          5678899999999999999999875432   2334578999999999776543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0055  Score=51.92  Aligned_cols=40  Identities=25%  Similarity=0.467  Sum_probs=35.9

Q ss_pred             ccccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          139 GSKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       139 ~~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      |.+|.||++-|-|. +.||+++|+.|...|++|...+|+.+
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES   41 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46799999999997 67999999999999999999998754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0092  Score=44.21  Aligned_cols=35  Identities=20%  Similarity=0.410  Sum_probs=32.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      +++.|||.|.+|-.+|..|+.+|.+|..+.+.+..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            68999999999999999999999999999987653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.45  E-value=0.0054  Score=48.86  Aligned_cols=36  Identities=17%  Similarity=0.324  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~  178 (313)
                      .+|||.|||.|..|-..|..|+..|++ |.++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            478999999999999999999999995 999988764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.33  E-value=0.0084  Score=49.82  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=31.9

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      ||||.|||.|.-|-..|..|+..|++|.+++++.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6999999999999999999999999999998754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.30  E-value=0.013  Score=43.27  Aligned_cols=38  Identities=21%  Similarity=0.155  Sum_probs=34.2

Q ss_pred             cCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          142 FSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       142 l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      ..+++|.|||.|.+|-.+|..|+.+|.+|..+.+.+..
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            45899999999999999999999999999999887643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.012  Score=44.21  Aligned_cols=35  Identities=31%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      |++.|||.|.+|-.+|..|+.+|.+|+.+.+...-
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            79999999999999999999999999999987653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.19  E-value=0.0092  Score=50.60  Aligned_cols=37  Identities=27%  Similarity=0.368  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcC-C--hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          142 FSGKSVGIVGL-G--RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       142 l~g~~vgiiG~-G--~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      |+||++.|.|. |  .||.++|+.|...|++|+..+|+.+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            89999999997 4  5999999999999999999998643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.13  E-value=0.0088  Score=44.84  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=29.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      +++.|||.|.||-.+|..|+.+|.+|..+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999888764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.11  E-value=0.012  Score=43.72  Aligned_cols=35  Identities=20%  Similarity=0.418  Sum_probs=31.9

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+++.|||.|.||-.+|..|+.+|++|..+.+...
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            37899999999999999999999999998887654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.06  E-value=0.0091  Score=44.75  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=33.5

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD  180 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~  180 (313)
                      .+++.|||.|.||-.+|..+..+|++|.+..|.+...
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            4799999999999999999999999999999877643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.014  Score=48.89  Aligned_cols=37  Identities=24%  Similarity=0.382  Sum_probs=33.0

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~  176 (313)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            45999999999999999999999999999 57888754

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.024  Score=44.30  Aligned_cols=91  Identities=11%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             ccCCCEEEEEcC---ChhHHHHHHHHHhcCCc-EEEECCCCcccc----------c--ccccCCHHHHHhhCCeeEEecC
Q 021361          141 KFSGKSVGIVGL---GRIGTAIAKRVEAFGCP-ISYHSRSEKSDA----------N--YKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~----------~--~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .|.|.+|++||=   |++.++++..+..+|.. +.++.+......          +  ...+.++++.++++|+|....-
T Consensus         1 kl~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~   80 (160)
T d1ekxa2           1 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV   80 (160)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCC
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeecc
Confidence            378999999995   67999999999999755 566665432211          1  2235789999999999886432


Q ss_pred             CChH----------hhhccCHHHHhhcCCCcEEEEcC
Q 021361          205 LTEE----------THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       205 ~~~~----------t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ....          ....++.+.++.++++++|..+.
T Consensus        81 ~~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          81 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             CGGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             cccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence            2111          11233567778888888888875

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.91  E-value=0.016  Score=43.25  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .+|+|.|||.|.+|-.+|..|...|.+|+.+.+...
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            478999999999999999999999999999988654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.87  E-value=0.016  Score=43.57  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .+++.|||.|.||-.+|..++.+|.+|+.+.+.+.-
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            479999999999999999999999999999887653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.85  E-value=0.017  Score=43.07  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=33.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      ++++.|||.|.+|-.+|..|+..|.+|..+.+....
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            689999999999999999999999999999987653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.83  E-value=0.0074  Score=48.00  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++.+
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~   61 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA   61 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccc
Confidence            4789999885 99999999999999999988776554

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.044  Score=45.79  Aligned_cols=38  Identities=26%  Similarity=0.468  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|+||++-|.|.+. ||+++|+.|...|++|+..+|+.+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~   42 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA   42 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            48999999999765 999999999999999999998754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.02  Score=45.93  Aligned_cols=39  Identities=23%  Similarity=0.358  Sum_probs=35.5

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +...+|+|.|||.|..|-+.|..|+..|++|..|++.+.
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            456789999999999999999999999999999998764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.81  E-value=0.025  Score=47.25  Aligned_cols=38  Identities=26%  Similarity=0.415  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.||++-|.|.+. ||+++|+.|...|++|+..+|+.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999999877 999999999999999999988764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.75  E-value=0.0058  Score=51.96  Aligned_cols=39  Identities=33%  Similarity=0.468  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ++|+||++-|-|.+. ||+++|+.|...|++|...+|+.+
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            468999999999854 999999999999999999998754

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.0077  Score=47.67  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=41.8

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhc-CCcE-EEECCCCccc-------------ccccccCCHHHHHhhCCeeEEec
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAF-GCPI-SYHSRSEKSD-------------ANYKYYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~-------------~~~~~~~~l~~l~~~aDvv~l~~  203 (313)
                      -+|+|+|+ |+||+++++.+... ++++ .++++.....             .+.....++++++..+|+|+=-.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs   79 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   79 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec
Confidence            37999995 99999999988754 7775 4666654321             12233467788888999887654

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.69  E-value=0.043  Score=43.35  Aligned_cols=62  Identities=10%  Similarity=0.092  Sum_probs=42.5

Q ss_pred             CCEEEEEcCChhHHH--HHHHHHh-cC---CcEEEECCCCcccc-------------c----ccccCCHHHHHhhCCeeE
Q 021361          144 GKSVGIVGLGRIGTA--IAKRVEA-FG---CPISYHSRSEKSDA-------------N----YKYYTNIIDLASNCQILI  200 (313)
Q Consensus       144 g~~vgiiG~G~iG~~--~a~~l~~-~g---~~V~~~~~~~~~~~-------------~----~~~~~~l~~l~~~aDvv~  200 (313)
                      ..||.|||.|++|..  +...+.. ..   -+|..+|..++...             +    .....+..+.++.||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            458999999999865  3333332 22   36899998765421             0    122468899999999999


Q ss_pred             EecCC
Q 021361          201 VACSL  205 (313)
Q Consensus       201 l~~p~  205 (313)
                      ++.-.
T Consensus        83 itag~   87 (167)
T d1u8xx1          83 AHIRV   87 (167)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            98754

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.67  E-value=0.087  Score=42.58  Aligned_cols=96  Identities=10%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             HHHHHHHHhcCCcEEEECCCCcc---------cccccccCCHHHHHhhCCeeEEec-CCChHhhhccCHHHHhhcCCCcE
Q 021361          157 TAIAKRVEAFGCPISYHSRSEKS---------DANYKYYTNIIDLASNCQILIVAC-SLTEETHHIVNRKVIDALGPSGI  226 (313)
Q Consensus       157 ~~~a~~l~~~g~~V~~~~~~~~~---------~~~~~~~~~l~~l~~~aDvv~l~~-p~~~~t~~~i~~~~l~~mk~ga~  226 (313)
                      =..++.|...|++|++=.-....         ..++....+.++++.++|+|+..- |...+    .+.+.++.||+|++
T Consensus        20 P~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~   95 (194)
T d1l7da2          20 PEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAV   95 (194)
T ss_dssp             HHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCE
T ss_pred             HHHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceE
Confidence            35788999999999875433221         234555678899999999887544 43322    23456788999999


Q ss_pred             EEEcCCCCccCHHHHHHHHHhCCceEEEccCC
Q 021361          227 LINIGRGAHIDEPELVSALLEGRLAGAGLDVY  258 (313)
Q Consensus       227 ~in~~rg~~vd~~al~~al~~g~~~ga~lDV~  258 (313)
                      +|..--  .....++.++|.+.++...++|..
T Consensus        96 li~~l~--p~~~~~~~~~l~~~~it~~a~e~i  125 (194)
T d1l7da2          96 LMCHLG--ALTNRPVVEALTKRKITAYAMELM  125 (194)
T ss_dssp             EEEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred             EEEecc--cccchhHHHHHHhcCceEEeeecc
Confidence            998753  566778999999999998888875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.66  E-value=0.011  Score=47.13  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.|++.++
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHH
Confidence            57899999999999999999999997 58888887654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.57  E-value=0.021  Score=42.04  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=32.8

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .+++.|||.|.+|-.+|..|+.+|++|+.+.+.+.-
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            479999999999999999999999999999887653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.52  E-value=0.015  Score=48.94  Aligned_cols=39  Identities=26%  Similarity=0.494  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ..|+||++-|-|.+   .||+++|+.|...|++|...+|+.+
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            36899999999975   5999999999999999988877643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.49  E-value=0.013  Score=46.13  Aligned_cols=37  Identities=24%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCC-cEEEECCCCcc
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGC-PISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~-~V~~~~~~~~~  179 (313)
                      .|.+|.|+|. |.+|...++.++..|. +|++.++++++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~   65 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEA   65 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhh
Confidence            4789999995 9999999999999996 78888887643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.48  E-value=0.021  Score=44.14  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC--cEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC--PISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~--~V~~~~~~~~  178 (313)
                      .||+|-|||.|.+|-.+|..|+.+|.  +|+.+++.+.
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            48999999999999999999998885  6888887763

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.43  E-value=0.019  Score=42.72  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=32.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ++++.|||.|.+|-.+|..|..+|.+|..+.+.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            47899999999999999999999999999988654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.43  E-value=0.012  Score=49.94  Aligned_cols=38  Identities=26%  Similarity=0.374  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999987 4999999999999999999998764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.40  E-value=0.063  Score=44.72  Aligned_cols=38  Identities=29%  Similarity=0.450  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|+||++-|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS   40 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3789999999975 5999999999999999999998754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.38  E-value=0.028  Score=42.50  Aligned_cols=37  Identities=14%  Similarity=0.241  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .++++.|||.|.+|-.+|..|+..|.+|.++++....
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            4689999999999999999999999999999987653

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.37  E-value=0.054  Score=45.16  Aligned_cols=37  Identities=24%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             cCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          142 FSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       142 l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      |+||++-|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            789999999975 5999999999999999999998754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.33  E-value=0.019  Score=43.02  Aligned_cols=80  Identities=19%  Similarity=0.174  Sum_probs=49.4

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc-----ccccc----cCCHHHH----HhhCCeeEEecCCChHhhh
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKY----YTNIIDL----ASNCQILIVACSLTEETHH  211 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~l~~l----~~~aDvv~l~~p~~~~t~~  211 (313)
                      |++-|+|+|.+|+.+++.|++.  +|.+.+..++..     .+...    ..+.+.+    +.+|+.++++.+.+..+  
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n--   76 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSET--   76 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhh--
Confidence            5688999999999999999754  566666655432     12111    1233333    56789999888754333  


Q ss_pred             ccCHHHHhhcCCCcEEE
Q 021361          212 IVNRKVIDALGPSGILI  228 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~i  228 (313)
                      +.-....+.+.|...++
T Consensus        77 ~~~~~~~r~~~~~~~ii   93 (129)
T d2fy8a1          77 IHCILGIRKIDESVRII   93 (129)
T ss_dssp             HHHHHHHHHHCSSSCEE
T ss_pred             HHHHHHHHHHCCCceEE
Confidence            33344455666664333

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.041  Score=43.94  Aligned_cols=92  Identities=7%  Similarity=0.079  Sum_probs=64.4

Q ss_pred             cccCCCEEEEEcCC--hhHHHHHHHHHhcCCcEEEECCCCcccc----------------cccccCCHHHHHhhCCeeEE
Q 021361          140 SKFSGKSVGIVGLG--RIGTAIAKRVEAFGCPISYHSRSEKSDA----------------NYKYYTNIIDLASNCQILIV  201 (313)
Q Consensus       140 ~~l~g~~vgiiG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~~----------------~~~~~~~l~~l~~~aDvv~l  201 (313)
                      +.|.|.+|+++|=|  ++..+++..+..||+++.++.|..-...                ......++++.++.+|+|..
T Consensus         1 k~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt   80 (183)
T d1duvg2           1 KAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYT   80 (183)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEE
Confidence            35789999999955  7999999999999999999887532110                12235789999999999876


Q ss_pred             ecCCC----h---Hh-------hhccCHHHHhhcCCCcEEEEcC
Q 021361          202 ACSLT----E---ET-------HHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       202 ~~p~~----~---~t-------~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      -.=..    .   ..       ...++...+...+++++|..+.
T Consensus        81 ~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          81 DVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             EehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            43211    0   00       1223344555678899999876

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.21  E-value=0.13  Score=40.08  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++.++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            58899999999999999999999996 68888887764

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.17  E-value=0.028  Score=43.31  Aligned_cols=86  Identities=13%  Similarity=0.251  Sum_probs=53.1

Q ss_pred             CEEEEEc-CChhHHHHHHHHHhcCC--cEEEECCCCcc--ccc--------------cc-ccCCHHHHHhhCCeeEEecC
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEAFGC--PISYHSRSEKS--DAN--------------YK-YYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~~g~--~V~~~~~~~~~--~~~--------------~~-~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .||+||| .|.+|..+|-.+...+.  ++..+|.....  ..+              .. ...+.+ .++.||+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~-~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE-DTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG-GGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH-HhhhcCEEEEecc
Confidence            3899999 69999999999987776  68888864321  100              01 112333 4579999998754


Q ss_pred             C--ChH-hh-hcc--C-------HHHHhhcCCCcEEEEcC
Q 021361          205 L--TEE-TH-HIV--N-------RKVIDALGPSGILINIG  231 (313)
Q Consensus       205 ~--~~~-t~-~~i--~-------~~~l~~mk~ga~~in~~  231 (313)
                      .  .+. ++ .++  |       .+.+....|+++++.++
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt  119 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence            2  221 11 111  1       12344567788998884

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.016  Score=49.27  Aligned_cols=38  Identities=26%  Similarity=0.484  Sum_probs=34.8

Q ss_pred             ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|+||++-|.|.+. ||+++|+.|...|++|+..+|+.+
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            49999999999876 999999999999999999999764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.12  E-value=0.017  Score=48.51  Aligned_cols=38  Identities=16%  Similarity=0.302  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|+||++-|-|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999998 45999999999999999999998764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.08  E-value=0.022  Score=44.05  Aligned_cols=58  Identities=17%  Similarity=0.298  Sum_probs=41.5

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCccc--cc---------------ccc---cCCHHHHHhhCCeeEEe
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSD--AN---------------YKY---YTNIIDLASNCQILIVA  202 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~--~~---------------~~~---~~~l~~l~~~aDvv~l~  202 (313)
                      ||+|||. |.+|..+|-.+...|.  ++..+|+.....  .+               ...   ..+..+.+++||+|+++
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVit   81 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIIT   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEEe
Confidence            7999995 9999999999998885  788898765311  00               000   12234577899999998


Q ss_pred             c
Q 021361          203 C  203 (313)
Q Consensus       203 ~  203 (313)
                      .
T Consensus        82 A   82 (145)
T d1hyea1          82 S   82 (145)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.06  E-value=0.14  Score=39.70  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.++++++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH
Confidence            478999999999999999999999985 6666666543

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=94.05  E-value=0.028  Score=46.79  Aligned_cols=66  Identities=17%  Similarity=0.207  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCChhH----HHHHHHHHhc--CCcEE-EECCCCccc---------ccccccCCHHHHHhh--CCeeEEecC
Q 021361          143 SGKSVGIVGLGRIG----TAIAKRVEAF--GCPIS-YHSRSEKSD---------ANYKYYTNIIDLASN--CQILIVACS  204 (313)
Q Consensus       143 ~g~~vgiiG~G~iG----~~~a~~l~~~--g~~V~-~~~~~~~~~---------~~~~~~~~l~~l~~~--aDvv~l~~p  204 (313)
                      +--+|||||+|.+|    +.-+..++..  +++|. ++|++.+..         .....+.++++++++  -|+|++++|
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp   94 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK   94 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence            34689999999854    4444455544  56765 678876432         122346799999864  678899888


Q ss_pred             CChH
Q 021361          205 LTEE  208 (313)
Q Consensus       205 ~~~~  208 (313)
                      ...+
T Consensus        95 ~~~h   98 (237)
T d2nvwa1          95 VPEH   98 (237)
T ss_dssp             HHHH
T ss_pred             Ccch
Confidence            5444

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.03  E-value=0.077  Score=45.77  Aligned_cols=39  Identities=23%  Similarity=0.358  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      +|+||++-|-|.+. ||+++|+.|...|++|.+.|+..+.
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~   43 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDF   43 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCT
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence            48999999998875 9999999999999999999987653

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.01  E-value=0.031  Score=47.23  Aligned_cols=38  Identities=34%  Similarity=0.458  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   39 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE   39 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4789999999977 4999999999999999999998764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.96  E-value=0.039  Score=47.88  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=34.0

Q ss_pred             cCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          142 FSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       142 l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .+||+|.|.| .|-||+.+++.|...|++|.+++|...+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            4789999999 6789999999999999999999987643

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=93.95  E-value=0.073  Score=44.83  Aligned_cols=84  Identities=15%  Similarity=0.249  Sum_probs=56.5

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhh
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDA  220 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~  220 (313)
                      ..+|++|++||+-    ...+.++..|+++++++++++.  +.......++++.+||+|++.-  +.-..+-+ ...|++
T Consensus       119 ~~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~--gd~p~~~~~~lLp~aD~viiTG--sTlvN~Tl-~~LL~~  189 (251)
T d2h1qa1         119 EVKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE--GDYPLPASEFILPECDYVYITC--ASVVDKTL-PRLLEL  189 (251)
T ss_dssp             TTTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT--TCEEGGGHHHHGGGCSEEEEET--HHHHHTCH-HHHHHH
T ss_pred             ccCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC--CCCCchHHHHhhhcCCEEEEEe--chhhcCCH-HHHHHh
Confidence            3479999999875    4566677888999999998653  2222235778999999999855  11111222 347777


Q ss_pred             cCCCcEEEEcCCC
Q 021361          221 LGPSGILINIGRG  233 (313)
Q Consensus       221 mk~ga~~in~~rg  233 (313)
                      .|+...+|=+|-.
T Consensus       190 ~~~a~~vvl~GPS  202 (251)
T d2h1qa1         190 SRNARRITLVGPG  202 (251)
T ss_dssp             TTTSSEEEEESTT
T ss_pred             CCcCCEEEEECCC
Confidence            8877777666633

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.94  E-value=0.056  Score=45.18  Aligned_cols=38  Identities=29%  Similarity=0.320  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|-|.+ .||+++|+.|...|++|.+.+|+..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            5899999999985 5999999999999999999988654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.056  Score=45.46  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=35.2

Q ss_pred             ccccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          139 GSKFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +..|+||++-|.|.+ .||+++|+.|...|++|++.+|+.+
T Consensus         5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_           5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG   45 (257)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            356999999999975 5999999999999999999998754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.021  Score=47.77  Aligned_cols=38  Identities=24%  Similarity=0.445  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcCCh---hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLGR---IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G~---iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.||++-|-|.+.   ||+++|+.|...|++|+..+|+.+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            38999999999864   999999999999999998888643

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.89  E-value=0.09  Score=44.04  Aligned_cols=38  Identities=13%  Similarity=0.009  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|-|.+ .||.++|+.|...|++|++..|+.+
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4889999999988 4999999999999999877766554

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.80  E-value=0.04  Score=45.88  Aligned_cols=65  Identities=25%  Similarity=0.322  Sum_probs=47.1

Q ss_pred             ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcccccccc-------cCC-------HHHHHhhCCeeEEecCC
Q 021361          141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKSDANYKY-------YTN-------IIDLASNCQILIVACSL  205 (313)
Q Consensus       141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-------~~~-------l~~l~~~aDvv~l~~p~  205 (313)
                      .|.||++-|-|.+. ||+++|+.|...|++|...+|+.+.......       ..+       ..+-+..-|+++.+...
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~   83 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL   83 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeecc
Confidence            58999999999875 9999999999999999999987765322110       111       22223467988887643

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.79  E-value=0.054  Score=45.54  Aligned_cols=63  Identities=25%  Similarity=0.246  Sum_probs=45.6

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-------------cccc-------ccCCHHHHHhhCCeeEEec
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-------------ANYK-------YYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-------------~~~~-------~~~~l~~l~~~aDvv~l~~  203 (313)
                      +||.|.|. |.||+.+++.|...|++|++.+|+....             .++.       ...++.+.++.++.++.+.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~   83 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL   83 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence            46999994 9999999999999999999999865421             1111       1123556778888888877


Q ss_pred             CCCh
Q 021361          204 SLTE  207 (313)
Q Consensus       204 p~~~  207 (313)
                      +...
T Consensus        84 ~~~~   87 (312)
T d1qyda_          84 AGGV   87 (312)
T ss_dssp             CCSS
T ss_pred             hhcc
Confidence            6543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.73  E-value=0.044  Score=46.78  Aligned_cols=40  Identities=23%  Similarity=0.334  Sum_probs=36.0

Q ss_pred             cccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          140 SKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       140 ~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .+|+||++-|-| .|.||+++|+.|...|++|++.+|+.+.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            579999999998 6789999999999999999999987643

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.026  Score=47.27  Aligned_cols=38  Identities=34%  Similarity=0.455  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|+||++-|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            3789999998854 5999999999999999999998754

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.72  E-value=0.048  Score=46.11  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|.|.+ .||+++|+.|...|++|+..+|+.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999965 5999999999999999999998754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.71  E-value=0.039  Score=45.47  Aligned_cols=36  Identities=19%  Similarity=0.250  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ..++|.|||.|..|-.+|..|+..|.+|.++++.+.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457999999999999999999999999999998654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.62  E-value=0.032  Score=45.55  Aligned_cols=34  Identities=26%  Similarity=0.303  Sum_probs=31.2

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      -|+|.|||.|..|-+.|..|+..|++|.++++..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999753

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.59  E-value=0.031  Score=47.64  Aligned_cols=37  Identities=27%  Similarity=0.418  Sum_probs=33.8

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      |+||++-|-|. +.||+++|+.|...|++|...+|+.+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            89999999997 57999999999999999999998754

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.58  E-value=0.019  Score=48.66  Aligned_cols=38  Identities=24%  Similarity=0.411  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.||++-|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999986 4999999999999999999998654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.50  E-value=0.035  Score=46.83  Aligned_cols=35  Identities=31%  Similarity=0.338  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      ..|+|.|||.|..|-..|..|+..|++|.+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999999754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.46  E-value=0.037  Score=40.11  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=34.0

Q ss_pred             cccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          138 LGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       138 ~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      -...++||+|.|||.|.-|..+|..|...+-++++..++..
T Consensus        26 ~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          26 EPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             CGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             chhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            34578999999999999999999999988888766555443

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.45  E-value=0.041  Score=42.31  Aligned_cols=83  Identities=13%  Similarity=0.097  Sum_probs=49.7

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcC---CcEEEE-CCCCc-cccc-----ccccCCHHHHHhhCCeeEEecCCChHhhhcc
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFG---CPISYH-SRSEK-SDAN-----YKYYTNIIDLASNCQILIVACSLTEETHHIV  213 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g---~~V~~~-~~~~~-~~~~-----~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i  213 (313)
                      .+|||||. |-+|+.+.+.|...+   .++... +++.. +...     ........+.+.++|++++++|.... ..+ 
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s-~~~-   80 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVS-RAH-   80 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHH-HHH-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchh-hhh-
Confidence            47999987 999999999997544   356544 33222 1111     01111122346789999999985322 211 


Q ss_pred             CHHHHhhcCCCcEEEEcCC
Q 021361          214 NRKVIDALGPSGILINIGR  232 (313)
Q Consensus       214 ~~~~l~~mk~ga~~in~~r  232 (313)
                      -.   ...+.|..+||.|.
T Consensus        81 ~~---~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          81 AE---RARAAGCSVIDLSG   96 (144)
T ss_dssp             HH---HHHHTTCEEEETTC
T ss_pred             cc---ccccCCceEEeech
Confidence            12   22467899999764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.43  E-value=0.022  Score=48.11  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      |+||++-|-|. +.||+++|+.|...|++|...+|+.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLE   40 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            88999999998 66999999999999999999998754

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.14  Score=43.82  Aligned_cols=39  Identities=26%  Similarity=0.364  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      -.|+||++-|-|.+. ||+++|+.|...|++|++.+|+.+
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~   47 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE   47 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            359999999999755 999999999999999999998764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.34  E-value=0.079  Score=46.35  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=28.3

Q ss_pred             CEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      |.+.|.| .|-||+.+++.|...|++|++.+|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5677888 89999999999999999999999854

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.33  E-value=0.099  Score=43.35  Aligned_cols=36  Identities=25%  Similarity=0.392  Sum_probs=31.9

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      -|||.|.|. |.+|+.+++.|...|++|.+.+|....
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            378999996 999999999999999999999987643

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.30  E-value=0.065  Score=42.49  Aligned_cols=93  Identities=13%  Similarity=0.261  Sum_probs=58.1

Q ss_pred             EEEEEc-CChhHHHHHHHHHhc-CCcEEEE-CCCCccccc-----------------ccccCCHHHHHhhCCeeEEecCC
Q 021361          146 SVGIVG-LGRIGTAIAKRVEAF-GCPISYH-SRSEKSDAN-----------------YKYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~~-g~~V~~~-~~~~~~~~~-----------------~~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      +|+|+| -|-+|+.+.+.|... .++|... .++.....+                 .....+.+.....+|++++++|.
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp~   82 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATAH   82 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSCH
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccccc
Confidence            799999 799999999999987 6676543 222111111                 01123444556789999999985


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCCCccCHHHHHH
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRGAHIDEPELVS  243 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~  243 (313)
                      ....+  +   .-...+.+..+|+.+..--.+....+.
T Consensus        83 ~~s~~--~---~~~~~~~~~~vIDlSadfRl~~~~~~~  115 (179)
T d2g17a1          83 EVSHD--L---APQFLQAGCVVFDLSGAFRVNDRAFYE  115 (179)
T ss_dssp             HHHHH--H---HHHHHHTTCEEEECSSTTSSSCHHHHH
T ss_pred             hhHHH--H---hhhhhhcCceeeccccccccccccccc
Confidence            32222  1   122346789999998666555444443

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=93.28  E-value=0.19  Score=38.63  Aligned_cols=101  Identities=16%  Similarity=0.234  Sum_probs=55.7

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhc-C---CcEEEECCC-Cc-ccccc-----cc-cCCHHHHHhhCCeeEEecCCChHhhhc
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAF-G---CPISYHSRS-EK-SDANY-----KY-YTNIIDLASNCQILIVACSLTEETHHI  212 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~-g---~~V~~~~~~-~~-~~~~~-----~~-~~~l~~l~~~aDvv~l~~p~~~~t~~~  212 (313)
                      +|||||. |-+|+.+.++|... .   .++..++.+ .. +....     .. ...-.+.++++|++++|+|.... ..+
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s-~~~   80 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYT-EKV   80 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHH-HHH
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHH-HHH
Confidence            7999985 88999999877542 2   355544322 21 11110     01 11223557899999999985322 222


Q ss_pred             cCHHHHhhcCCCcEEEEcCCCCc-----------cCHHHHHHHHHhCC
Q 021361          213 VNRKVIDALGPSGILINIGRGAH-----------IDEPELVSALLEGR  249 (313)
Q Consensus       213 i~~~~l~~mk~ga~~in~~rg~~-----------vd~~al~~al~~g~  249 (313)
                       -...++ -...+++|+.|..=-           ++.+.+.+++++|.
T Consensus        81 -~~~l~~-~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          81 -YPALRQ-AGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             -HHHHHH-TTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             -hHHHHH-cCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence             222222 233457787774321           45555666666654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.03  E-value=0.058  Score=44.32  Aligned_cols=39  Identities=28%  Similarity=0.340  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +.-.+|+|.|||.|..|-..|..|+..|++|.++++..+
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            345889999999999999999999999999999987664

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.03  E-value=0.023  Score=48.19  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=35.5

Q ss_pred             cccccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          138 LGSKFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       138 ~~~~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ....|+||++-|-| -+.||+++|+.|...|++|++.+++..
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~   53 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   53 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            34579999999999 678999999999999999988877643

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.98  E-value=0.046  Score=46.15  Aligned_cols=39  Identities=26%  Similarity=0.355  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ++|+||++-|-|. +.||+++|+.|...|++|.+.+|+.+
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            4699999999985 67999999999999999999888754

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.93  E-value=0.052  Score=45.77  Aligned_cols=38  Identities=26%  Similarity=0.336  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|-|. +.||+++|+.|...|++|...+|+.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999886 57999999999999999999998764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.92  E-value=0.054  Score=47.04  Aligned_cols=63  Identities=19%  Similarity=0.287  Sum_probs=46.7

Q ss_pred             CCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccc--------ccccc-----c---CCHHHHHhhCCeeEEecCCC
Q 021361          144 GKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSD--------ANYKY-----Y---TNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       144 g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------~~~~~-----~---~~l~~l~~~aDvv~l~~p~~  206 (313)
                      -|+|.|+| .|.||+.+++.|...|++|.+..|++.+.        .++..     .   ..++.++..+|.++...+..
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~~   82 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ   82 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCST
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecccc
Confidence            47999999 59999999999999999999998866432        11111     1   12556788899888877644

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.91  E-value=0.044  Score=46.11  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=32.6

Q ss_pred             cCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          142 FSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       142 l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      |+||++-|-|.+. ||+++|+.|...|++|.+.+|+..
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~   39 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA   39 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            7899888888765 999999999999999999998753

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.84  E-value=0.02  Score=48.46  Aligned_cols=38  Identities=32%  Similarity=0.469  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|+||++-|-|.+. ||+++|+.|...|++|...+|+.+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~   43 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   43 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999999999876 999999999999999999998764

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.77  E-value=0.049  Score=42.24  Aligned_cols=84  Identities=14%  Similarity=0.212  Sum_probs=52.3

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCC---cEEEECCCCc--ccc-----cccccCCHHHHHhhCCeeEEecCCChHhhhc
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGC---PISYHSRSEK--SDA-----NYKYYTNIIDLASNCQILIVACSLTEETHHI  212 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~---~V~~~~~~~~--~~~-----~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~  212 (313)
                      |-+|||||. |-+|+.+.++|....+   ++.+...+..  +..     ........++...++|++++++|.... ..+
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s-~~~   79 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTS-AKY   79 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHH-HHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccch-hhH
Confidence            558999998 9999999999987754   3444432211  110     011123344566789999999874322 211


Q ss_pred             cCHHHHhhcCCCcEEEEcCC
Q 021361          213 VNRKVIDALGPSGILINIGR  232 (313)
Q Consensus       213 i~~~~l~~mk~ga~~in~~r  232 (313)
                          ..+..+.|..+|+.|.
T Consensus        80 ----~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          80 ----APYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ----HHHHHHTTCEEEECSS
T ss_pred             ----HhhhccccceehhcCh
Confidence                2234567999999873

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.69  E-value=0.041  Score=46.05  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-Ch--hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GR--IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~--iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|+||++-|.|. |.  ||.++|+.|...|++|+..+++..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~   43 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   43 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH
Confidence            389999999995 54  999999999999999988877654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.61  E-value=0.048  Score=45.89  Aligned_cols=39  Identities=31%  Similarity=0.439  Sum_probs=35.0

Q ss_pred             ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|+||++-|-|.+. ||+++|+.|...|++|...+|+.+.
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            58999999999876 9999999999999999999987653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.54  E-value=0.059  Score=46.63  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +.|+|.|||.|..|-.+|..|+..|.+|.+++.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            368999999999999999999999999999987664

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.50  E-value=0.065  Score=42.89  Aligned_cols=61  Identities=18%  Similarity=0.166  Sum_probs=42.4

Q ss_pred             CEEEEEc-CChhHHHHHHHHHhcCCcE--EEECCCCccc----ccc-------cccCCHHHHHhhCCeeEEecCC
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEAFGCPI--SYHSRSEKSD----ANY-------KYYTNIIDLASNCQILIVACSL  205 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~~g~~V--~~~~~~~~~~----~~~-------~~~~~l~~l~~~aDvv~l~~p~  205 (313)
                      +||.|.| .|.||+.+++.|...|.+|  ....|++++.    ...       ....++.++++.+|.|+.+...
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence            5899999 6999999999999989764  4455655321    111       1123456678899998876543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.019  Score=48.45  Aligned_cols=38  Identities=26%  Similarity=0.411  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4899999999875 5999999999999999999998654

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.49  E-value=0.85  Score=35.76  Aligned_cols=92  Identities=20%  Similarity=0.356  Sum_probs=59.7

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcC-CcEEEE-CCCCcc-cc--------c--ccccCCHHHHHhhCCeeEEecCCChHhhh
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFG-CPISYH-SRSEKS-DA--------N--YKYYTNIIDLASNCQILIVACSLTEETHH  211 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g-~~V~~~-~~~~~~-~~--------~--~~~~~~l~~l~~~aDvv~l~~p~~~~t~~  211 (313)
                      +|||+|. |-+|+.+.+.|..+- .++.+. +++... ..        .  .....+.+++..++|++++++|....-+ 
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~~-   81 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASYD-   81 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHHH-
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHHH-
Confidence            7999995 889999999998653 455444 333221 10        0  0112467788889999999999754422 


Q ss_pred             ccCHHHHhhcCCCcEEEEcCCCCccCHHHHHHH
Q 021361          212 IVNRKVIDALGPSGILINIGRGAHIDEPELVSA  244 (313)
Q Consensus       212 ~i~~~~l~~mk~ga~~in~~rg~~vd~~al~~a  244 (313)
                           ..... .+..+||.|-.=-.+....++.
T Consensus        82 -----~~~~~-~~~~VIDlSadfRl~~~~~y~~  108 (176)
T d1vkna1          82 -----LVREL-KGVKIIDLGADFRFDDPGVYRE  108 (176)
T ss_dssp             -----HHTTC-CSCEEEESSSTTTCSSHHHHHH
T ss_pred             -----HHHhh-ccceEEecCccccccchhhHHH
Confidence                 22233 5789999987666655555543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.37  E-value=0.064  Score=44.58  Aligned_cols=57  Identities=12%  Similarity=0.181  Sum_probs=41.9

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccccccccCCHHHHHh--hCCeeEEecCC
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDANYKYYTNIIDLAS--NCQILIVACSL  205 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~~l~~--~aDvv~l~~p~  205 (313)
                      +|.|.|. |-||+.+++.|...|++|++.+|..-..   .-..+++++++  +.|+|+-+...
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~---~d~~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDI---TNVLAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCT---TCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccC---CCHHHHHHHHHHcCCCEEEeeccc
Confidence            6899997 9999999999999999999999865321   11234566766  45877655443

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.12  Score=42.34  Aligned_cols=65  Identities=17%  Similarity=0.221  Sum_probs=47.9

Q ss_pred             cCCCEEEEEc-CChhHHHHHHHHHhcCC--cEEEECCCCccccc------------ccccCCHHHHHhhCCeeEEecCCC
Q 021361          142 FSGKSVGIVG-LGRIGTAIAKRVEAFGC--PISYHSRSEKSDAN------------YKYYTNIIDLASNCQILIVACSLT  206 (313)
Q Consensus       142 l~g~~vgiiG-~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~------------~~~~~~l~~l~~~aDvv~l~~p~~  206 (313)
                      +.+|+|.|.| .|.+|+.+++.|...|.  +|++++|++.....            .....++.+.++.+|+++.++..+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence            5788999998 69999999999988785  79998886543211            111245666788999998877543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.20  E-value=0.067  Score=40.24  Aligned_cols=31  Identities=32%  Similarity=0.473  Sum_probs=26.0

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCCcEE-EECCC
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGCPIS-YHSRS  176 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~-~~~~~  176 (313)
                      +|||+|+ |+||+.+++.+...|+++. .+|+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~   34 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN   34 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC
Confidence            7999996 9999999999999999865 44543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.16  E-value=0.059  Score=42.62  Aligned_cols=85  Identities=13%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCccc-----cccc------ccCCHHHHH-----hhCCeeEEecCC
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYK------YYTNIIDLA-----SNCQILIVACSL  205 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~------~~~~l~~l~-----~~aDvv~l~~p~  205 (313)
                      .|.+|.|.|. |.+|...++.++..|++|++..+++++.     .++.      .....+.+.     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            4889999998 6699999999999999999988776532     1211      111223322     23788887774 


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcCCC
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIGRG  233 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~rg  233 (313)
                       .++    -.+.++.++++..++.+|..
T Consensus       108 -~~~----~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         108 -GEF----LNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             -HHH----HHHHGGGEEEEEEEEECCCG
T ss_pred             -chh----hhhhhhhccCCCeEEeecce
Confidence             222    23567888889988888653

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.15  E-value=0.053  Score=45.47  Aligned_cols=38  Identities=26%  Similarity=0.489  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|-|.+. ||+++|+.|...|++|.+.+|+.+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE   40 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999999999865 999999999999999999998764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=0.14  Score=38.17  Aligned_cols=40  Identities=15%  Similarity=0.266  Sum_probs=35.7

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +...+||+|.|||.|..+-.-|..|..+.-+|+++-|+.+
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            3456899999999999999999999999999999888765

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.99  E-value=0.091  Score=43.98  Aligned_cols=38  Identities=18%  Similarity=0.354  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999965 5999999999999999999998654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.96  E-value=0.061  Score=45.63  Aligned_cols=36  Identities=31%  Similarity=0.371  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEcCC---hhHHHHHHHHHhcCCcEEEECCC
Q 021361          141 KFSGKSVGIVGLG---RIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       141 ~l~g~~vgiiG~G---~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      .|+||++-|-|.+   .||+++|+.|...|++|+..+|.
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            6899999999986   59999999999999999887654

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=91.92  E-value=0.18  Score=43.63  Aligned_cols=90  Identities=11%  Similarity=0.220  Sum_probs=62.5

Q ss_pred             ccCCCEEEEEcC---ChhHHHHHHHHHhcC-CcEEEECCCCccc----------c--cccccCCHHHHHhhCCeeEEecC
Q 021361          141 KFSGKSVGIVGL---GRIGTAIAKRVEAFG-CPISYHSRSEKSD----------A--NYKYYTNIIDLASNCQILIVACS  204 (313)
Q Consensus       141 ~l~g~~vgiiG~---G~iG~~~a~~l~~~g-~~V~~~~~~~~~~----------~--~~~~~~~l~~l~~~aDvv~l~~p  204 (313)
                      .+.|++|+++|-   +++..+++..+..+| +++.++.|..-..          .  ......++++.++++|+|... .
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~-~  229 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT-R  229 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEEC-C
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeec-c
Confidence            378999999997   788999999999885 6788877644211          1  123357899999999988753 2


Q ss_pred             CChH-----------hhhccCHHHHhhcCCCcEEEEcC
Q 021361          205 LTEE-----------THHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       205 ~~~~-----------t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      ...+           ....++.+.++.++++++|..+.
T Consensus       230 ~~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcL  267 (310)
T d1tuga1         230 VQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             CCGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCS
T ss_pred             cchhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCC
Confidence            2211           01235677777888888887654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.86  E-value=0.089  Score=43.43  Aligned_cols=63  Identities=19%  Similarity=0.246  Sum_probs=45.8

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--c-----ccccCCHHHHH---hhCCeeEEec
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--N-----YKYYTNIIDLA---SNCQILIVAC  203 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--~-----~~~~~~l~~l~---~~aDvv~l~~  203 (313)
                      .|+||++-|-|. +.||+++|+.|...|++|...+|+.+...  +     +......+.++   .+-|+++.+.
T Consensus         1 gLkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           1 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            378999999997 55999999999999999999998764321  1     11122344443   4688888765

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.60  E-value=0.47  Score=37.28  Aligned_cols=98  Identities=10%  Similarity=0.199  Sum_probs=62.2

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHh---cCC----cEEEECCCCccc-----------c------cccccCCHHHHHhhCCe
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEA---FGC----PISYHSRSEKSD-----------A------NYKYYTNIIDLASNCQI  198 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~---~g~----~V~~~~~~~~~~-----------~------~~~~~~~l~~l~~~aDv  198 (313)
                      -.+|.|+|. |.||..++-.|..   ||.    .+..+|......           .      ......+..+.++.+|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            458999996 9999999999875   454    345666554321           0      01224688999999999


Q ss_pred             eEEecCCChH---hh-hcc--C-------HHHHhh-cCCCcEEEEcCCCCccCHHHHHH
Q 021361          199 LIVACSLTEE---TH-HIV--N-------RKVIDA-LGPSGILINIGRGAHIDEPELVS  243 (313)
Q Consensus       199 v~l~~p~~~~---t~-~~i--~-------~~~l~~-mk~ga~~in~~rg~~vd~~al~~  243 (313)
                      |++.......   ++ .++  |       .+.+.. .+++++++-++  .++|..+++.
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~--NPvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG--NPCNTNALIC  160 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec--CcHHHHHHHH
Confidence            9997743211   11 121  1       123333 46678777775  4688888764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.40  E-value=0.036  Score=46.54  Aligned_cols=38  Identities=26%  Similarity=0.191  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.||++-|.|. +.||+++|+.|...|++|..++|+.+
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~   45 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK   45 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            578999999998 46999999999999999999998654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.28  E-value=0.053  Score=45.93  Aligned_cols=38  Identities=32%  Similarity=0.412  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|.|.+ .||+++|+.|...|++|...+|+.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999975 5999999999999999999998764

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.28  E-value=0.47  Score=37.95  Aligned_cols=93  Identities=11%  Similarity=0.074  Sum_probs=65.5

Q ss_pred             HHHHHHHhcCCcEEEECCCCcc---------cccccccCCHHHHHhhCCeeEEecCCChHhhhccCHHHHhhcCCCcEEE
Q 021361          158 AIAKRVEAFGCPISYHSRSEKS---------DANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALGPSGILI  228 (313)
Q Consensus       158 ~~a~~l~~~g~~V~~~~~~~~~---------~~~~~~~~~l~~l~~~aDvv~l~~p~~~~t~~~i~~~~l~~mk~ga~~i  228 (313)
                      ..++.|...|++|++=.-....         ..++....+.+++. +||+|+..-|.+        .+.++.||+|+++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence            5678888999999875433321         12344456677777 589887655433        23578899999998


Q ss_pred             EcCCCCccCHHHHHHHHHhCCceEEEccCCCCC
Q 021361          229 NIGRGAHIDEPELVSALLEGRLAGAGLDVYENE  261 (313)
Q Consensus       229 n~~rg~~vd~~al~~al~~g~~~ga~lDV~~~E  261 (313)
                      -.-..  .....+.+.|.+.++...++|..+..
T Consensus        92 ~~l~p--~~~~ell~~l~~~~it~~s~E~ipr~  122 (193)
T d1pjca2          92 TYLHL--AAARELTEQLMRVGLTAIAYETVELP  122 (193)
T ss_dssp             ECCCG--GGCHHHHHHHHHHTCEEEEGGGCCCT
T ss_pred             EecCc--ccchHHHHHHHHcCCEEEEeeecccc
Confidence            87553  44568999999999998998876543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=91.25  E-value=0.11  Score=43.27  Aligned_cols=39  Identities=28%  Similarity=0.380  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          141 KFSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       141 ~l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|+||++-|-| -+.||+++|+.|...|++|...+|+.+.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            38899999999 5679999999999999999999987653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.15  E-value=0.042  Score=46.18  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=27.9

Q ss_pred             CEEEEE-cC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          145 KSVGIV-GL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       145 ~~vgii-G~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      |||.+| |. +.||+++|+.|...|++|...+|+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            566555 55 45999999999999999999998764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.98  E-value=0.13  Score=37.54  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhc---CCcEEEECCCCcc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAF---GCPISYHSRSEKS  179 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~---g~~V~~~~~~~~~  179 (313)
                      .+++.|||.|.+|-.+|..+..+   |.+|..+.+.+.-
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            47999999999999999877655   8899888876653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.91  E-value=0.15  Score=40.45  Aligned_cols=35  Identities=17%  Similarity=0.109  Sum_probs=29.7

Q ss_pred             CCCEEEEE--cCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          143 SGKSVGIV--GLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       143 ~g~~vgii--G~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .|.++.|+  |.|.+|....+.++.+|++|++..++.
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~   64 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDR   64 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecc
Confidence            47889998  679999999999999999988765544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=90.88  E-value=0.094  Score=42.99  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=29.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      +|.|||.|..|-..|..|+..|++|.+++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            69999999999999999999999999998764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.82  E-value=0.12  Score=40.98  Aligned_cols=38  Identities=13%  Similarity=0.187  Sum_probs=33.3

Q ss_pred             cCCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          142 FSGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       142 l~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      -.|.+|.|.| -|.+|....+.++..|++|++..+++++
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k   68 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE   68 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH
Confidence            4578999999 5999999999999999999988877654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.72  E-value=0.082  Score=44.27  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=31.4

Q ss_pred             cccCCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCC
Q 021361          140 SKFSGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      +.|.||++.|.|.+. ||+++|+.|...|++|++..++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            469999999998765 9999999999999999875433

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.63  E-value=0.11  Score=41.27  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~  177 (313)
                      +|.|||.|..|-..|..|+..|+ +|.+++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            59999999999999999999997 699998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.15  Score=42.19  Aligned_cols=34  Identities=26%  Similarity=0.453  Sum_probs=31.1

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      -++|.|||.|.-|-..|..|...|++|.++..+.
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4679999999999999999999999999998754

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=90.38  E-value=0.12  Score=40.72  Aligned_cols=100  Identities=21%  Similarity=0.276  Sum_probs=56.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCcccc-----ccc-ccCCHH-HHHhhCCeeEEecCCChHhhhccCH---
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSDA-----NYK-YYTNII-DLASNCQILIVACSLTEETHHIVNR---  215 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~-~~~~l~-~l~~~aDvv~l~~p~~~~t~~~i~~---  215 (313)
                      +|||=|||+||+.+.+.|..-+.+|.+.+...+...     .+. .+..++ ++-...|.+++    +...-.+...   
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i----~g~~I~~~~~~~p   77 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYV----DGKAIRATAVKDP   77 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE----TTEEEEEECCSSG
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEe----cceeEEEEecCCh
Confidence            799999999999999999888899887765432210     000 000001 11123343333    1122222222   


Q ss_pred             HHHhhcCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 021361          216 KVIDALGPSGILINIGRGAHIDEPELVSALLEGR  249 (313)
Q Consensus       216 ~~l~~mk~ga~~in~~rg~~vd~~al~~al~~g~  249 (313)
                      +.+..-+-|.-+|==+.|.-.+.+.+..-|+.|-
T Consensus        78 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~ga  111 (168)
T d2g82a1          78 KEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGA  111 (168)
T ss_dssp             GGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTC
T ss_pred             HHCcccccCCceeEeccccccchHHhhhhhcccc
Confidence            2233223355555556888888888888888663

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.33  E-value=0.11  Score=41.75  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+++++
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchh
Confidence            47899999999999999999999998 58888887653

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.27  E-value=0.1  Score=43.71  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|.|||.|..|-.+|..|+..|.+|.++++.+.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            599999999999999999999999999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.24  E-value=0.19  Score=38.36  Aligned_cols=39  Identities=21%  Similarity=0.206  Sum_probs=33.2

Q ss_pred             cccCCCEEEEE--cCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          140 SKFSGKSVGIV--GLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       140 ~~l~g~~vgii--G~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +..-++.+-|+  |.|.||-.+|..|..+|++|.++.+...
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            34557788887  9999999999999999999999988654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.21  E-value=0.87  Score=34.91  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCcc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~  179 (313)
                      .|.+|.|+|.|.+|...+..++..|.. |++.++++++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            578999999999999999999988874 7888887654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.09  E-value=0.15  Score=43.96  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=29.2

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC--CcEEEECCCCc
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG--CPISYHSRSEK  178 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g--~~V~~~~~~~~  178 (313)
                      |+|+|||.|..|-.+|..|+..|  .+|.+++++.+
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            68999999999999999887655  58999998753

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.07  E-value=0.24  Score=37.41  Aligned_cols=48  Identities=23%  Similarity=0.396  Sum_probs=32.0

Q ss_pred             EEEEEc-CChhHHHHHHHHHh-cCCcEE-EECCCCcccccccccCCHHHHH-hhCCeeEEec
Q 021361          146 SVGIVG-LGRIGTAIAKRVEA-FGCPIS-YHSRSEKSDANYKYYTNIIDLA-SNCQILIVAC  203 (313)
Q Consensus       146 ~vgiiG-~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~~~~~~~~~l~~l~-~~aDvv~l~~  203 (313)
                      ||+|+| .|+||+.+++.+.. -++++. .+|+..          ++..+. ..+|+|+=-.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~----------~~~~~~~~~~DvvIDFS   52 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD----------PLSLLTDGNTEVVIDFT   52 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC----------CTHHHHTTTCSEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------chhhhccccCCEEEEcc
Confidence            699999 69999999998764 567754 555432          222332 4678776543

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.04  E-value=2.7  Score=33.56  Aligned_cols=152  Identities=17%  Similarity=0.203  Sum_probs=83.8

Q ss_pred             CCCEEEEEcCCh---------hHHHHHHHHHhcCCcEEEECCCCccccc------c-----------------------c
Q 021361          143 SGKSVGIVGLGR---------IGTAIAKRVEAFGCPISYHSRSEKSDAN------Y-----------------------K  184 (313)
Q Consensus       143 ~g~~vgiiG~G~---------iG~~~a~~l~~~g~~V~~~~~~~~~~~~------~-----------------------~  184 (313)
                      .|+||.|| +|.         +...+++.++..|++|.+.|-....-..      +                       .
T Consensus         1 ~~mKiLiI-~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (230)
T d2qwxa1           1 AGKKVLIV-YAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRS   79 (230)
T ss_dssp             CCCEEEEE-ECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTC
T ss_pred             CCCEEEEE-EeCCCCccHHHHHHHHHHHHHHhCCCEEEEEEccccCCcccchHHHhhhccCchhhhcchhhhhhhhhccc
Confidence            36777766 333         5566677778889999887754322100      0                       0


Q ss_pred             cc---CCHHHHHhhCCeeEEecCC-----ChHhhhccCHHH-------------HhhcCCCcEEEEcCCCCcc-------
Q 021361          185 YY---TNIIDLASNCQILIVACSL-----TEETHHIVNRKV-------------IDALGPSGILINIGRGAHI-------  236 (313)
Q Consensus       185 ~~---~~l~~l~~~aDvv~l~~p~-----~~~t~~~i~~~~-------------l~~mk~ga~~in~~rg~~v-------  236 (313)
                      ..   ....+.+.+||.|++..|.     +...+++||+=+             -..++....++-+++|+..       
T Consensus        80 ~~~di~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrV~~~g~af~~~~~~~~g~l~~kk~~~i~t~g~~~~~~~~~g  159 (230)
T d2qwxa1          80 LASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTG  159 (230)
T ss_dssp             BCHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTGGGSTTS
T ss_pred             ccHHHHHHHHHHHhCCEEEEEeCcccccCCHHHHHHHHHhcccCcccccCCCCCcccccCCeEEEEeccCCchhhccccc
Confidence            00   1233467889999999994     455677776521             1223333444444454421       


Q ss_pred             ---CHHHHHHHHHhCCceEEEccCCCCCCCCCcccCCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021361          237 ---DEPELVSALLEGRLAGAGLDVYENEPEVPEQMLGLNNVVLLPHVGSDTEETSKAMADLVIENLVAHFSNKPLL  309 (313)
Q Consensus       237 ---d~~al~~al~~g~~~ga~lDV~~~EP~~~~~l~~~pnvi~TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~  309 (313)
                         ....+...+...-....++++.             +.+.+ -.+...+.+..+.+.+...+.+++..+.+|+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~G~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p  221 (230)
T d2qwxa1         160 VNGDSRYFLWPLQHGTLHFCGFKVL-------------APQIS-FAPEIASEEERKGMVAAWSQRLQTIWKEEPIP  221 (230)
T ss_dssp             TTCCHHHHHHHHHCCCCCTTTCEEC-------------CCEEE-CCTTTSCHHHHHHHHHHHHHHHHTGGGCCCCC
T ss_pred             ccccHHHHHHHHHHHHHHhCCCeEc-------------ceEEE-ecCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence               2233333333332221111111             11222 12234577888889999999999999888865

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.03  E-value=0.048  Score=46.17  Aligned_cols=37  Identities=30%  Similarity=0.409  Sum_probs=31.9

Q ss_pred             CCCEEEEE--cCChhHHHHHHHHHh-cCCcEEEECCCCcc
Q 021361          143 SGKSVGIV--GLGRIGTAIAKRVEA-FGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgii--G~G~iG~~~a~~l~~-~g~~V~~~~~~~~~  179 (313)
                      +||+|+||  |-+.||+++|+.|.. .|++|+.++|+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            58999999  788899999999876 48999999997654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.01  E-value=0.17  Score=41.57  Aligned_cols=37  Identities=16%  Similarity=0.172  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .||+|-|.|. |.||+++|+.|...|++|...++....
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4899999998 559999999999999999988876543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.92  E-value=0.081  Score=44.80  Aligned_cols=38  Identities=37%  Similarity=0.493  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4789999999986 4999999999999999999998754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.86  E-value=0.096  Score=43.77  Aligned_cols=38  Identities=29%  Similarity=0.338  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +|+||++-|-|. +.||+++|+.|...|++|...+|+.+
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   41 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD   41 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 55999999999999999999998764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.86  E-value=0.15  Score=39.47  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=27.3

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEE
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYH  173 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~  173 (313)
                      .+++|.|||.|.+|-.+|..|+.+|.++.++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            3679999999999999999999999886544

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=89.76  E-value=0.12  Score=40.84  Aligned_cols=30  Identities=27%  Similarity=0.545  Sum_probs=26.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSR  175 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~  175 (313)
                      +|||=|||+||+.+.+.+...+.+|.+.+.
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            699999999999999999888888877754

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=89.75  E-value=0.53  Score=37.06  Aligned_cols=89  Identities=10%  Similarity=0.128  Sum_probs=52.7

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhc-CCcEEEE-CCCCcc-ccc-----------ccccCCHHHHHhhCCeeEEecCCChHh
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAF-GCPISYH-SRSEKS-DAN-----------YKYYTNIIDLASNCQILIVACSLTEET  209 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~-g~~V~~~-~~~~~~-~~~-----------~~~~~~l~~l~~~aDvv~l~~p~~~~t  209 (313)
                      -+|||+|. |-.|+.+.++|... .+++.+. +++... ...           .......++...++|++++++|....-
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s~   85 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTTQ   85 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHHH
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchHH
Confidence            47999995 88999999999865 4566544 333221 100           001123445678999999999965432


Q ss_pred             hhccCHHHHhhcCCCcEEEEcCCCCccCHH
Q 021361          210 HHIVNRKVIDALGPSGILINIGRGAHIDEP  239 (313)
Q Consensus       210 ~~~i~~~~l~~mk~ga~~in~~rg~~vd~~  239 (313)
                            +....+.+...+|+.+.+.-....
T Consensus        86 ------~~~~~l~~~~~~v~~~~~~~~~~~  109 (183)
T d2cvoa1          86 ------EIIKGLPQELKIVDLSADFRLRDI  109 (183)
T ss_dssp             ------HHHHTSCSSCEEEECSSTTTCSCH
T ss_pred             ------HHHHHHHhcCcccccchhhhcccc
Confidence                  333344455555665555444433

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.73  E-value=0.074  Score=42.33  Aligned_cols=82  Identities=12%  Similarity=0.234  Sum_probs=55.1

Q ss_pred             CCEEEEEc-CChhHHHHHHHHHhcCCcE-EEECCCCccc------cccc-----ccCCHHHHHhh-----CCeeEEecCC
Q 021361          144 GKSVGIVG-LGRIGTAIAKRVEAFGCPI-SYHSRSEKSD------ANYK-----YYTNIIDLASN-----CQILIVACSL  205 (313)
Q Consensus       144 g~~vgiiG-~G~iG~~~a~~l~~~g~~V-~~~~~~~~~~------~~~~-----~~~~l~~l~~~-----aDvv~l~~p~  205 (313)
                      +.+|.|.| .|.+|...++.++.+|+++ .+.+.+.++.      .++.     ...++.+.+++     .|+|+-++..
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg  110 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGG  110 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCCc
Confidence            47899999 5999999999999999974 4445543321      1211     12355655555     8888877641


Q ss_pred             ChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          206 TEETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       206 ~~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                        +    .-...++.++++..++.+|
T Consensus       111 --~----~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         111 --D----ISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             --H----HHHHHHTTEEEEEEEEEC-
T ss_pred             --h----hHHHHhhhccccccEEEec
Confidence              1    1235678889999998886

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.1  Score=43.44  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          141 KFSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       141 ~l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.||++-|.|. +.||+++|+.|...|++|+..+|+++
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~   41 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES   41 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            389999888765 57999999999999999999998764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.64  E-value=0.13  Score=39.62  Aligned_cols=60  Identities=10%  Similarity=-0.009  Sum_probs=42.2

Q ss_pred             CEEEEEc-CChhHHHHHHHHHhcCC-------cEEEECCCCccc-----------cc------ccccCCHHHHHhhCCee
Q 021361          145 KSVGIVG-LGRIGTAIAKRVEAFGC-------PISYHSRSEKSD-----------AN------YKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG-~G~iG~~~a~~l~~~g~-------~V~~~~~~~~~~-----------~~------~~~~~~l~~l~~~aDvv  199 (313)
                      .||.||| .|.+|..+|-.|...++       .+..+|......           ..      .....+..+.+++||+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            3899999 59999999999875332       356677654321           00      11235788999999999


Q ss_pred             EEecC
Q 021361          200 IVACS  204 (313)
Q Consensus       200 ~l~~p  204 (313)
                      +++..
T Consensus        84 Vitag   88 (154)
T d5mdha1          84 ILVGS   88 (154)
T ss_dssp             EECCS
T ss_pred             EEecc
Confidence            99774

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=0.12  Score=43.21  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      +.||++-|-|. +.||+++|+.|...|++|...+|+.++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            36899999988 459999999999999999999987653

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.55  E-value=0.16  Score=34.55  Aligned_cols=37  Identities=16%  Similarity=0.322  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|.+|.|.|. |.+|....+.++.+|++|++..+++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            4678999877 999999999999999999998887654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.43  E-value=0.17  Score=41.38  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=30.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC-cEEEECCCCc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSEK  178 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~~  178 (313)
                      +|.|||.|..|-.+|..|+..|. +|.++++++.
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            79999999999999999999996 8999998765

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.36  E-value=0.51  Score=37.34  Aligned_cols=62  Identities=15%  Similarity=0.154  Sum_probs=41.4

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCC--cEEEECCCCccccc-c-cccCCHHHHH----hhCCeeEEecCCC
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGC--PISYHSRSEKSDAN-Y-KYYTNIIDLA----SNCQILIVACSLT  206 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~-~-~~~~~l~~l~----~~aDvv~l~~p~~  206 (313)
                      |+|.|.|. |-||+.+++.|...|.  +|....|++..... . ....++.++.    ..+|.|+.|+..+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeee
Confidence            79999998 9999999999998897  56666655432211 1 1123444433    3469998877544

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.36  E-value=0.35  Score=41.77  Aligned_cols=61  Identities=15%  Similarity=0.199  Sum_probs=43.5

Q ss_pred             CCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCccccc-----cc-------ccCCHHHHHhhCCeeEEec
Q 021361          143 SGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKSDAN-----YK-------YYTNIIDLASNCQILIVAC  203 (313)
Q Consensus       143 ~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----~~-------~~~~l~~l~~~aDvv~l~~  203 (313)
                      .+.+|.|.| .|-||+.+++.|...|++|+++|+.......     ..       ....+.++++.+|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            677899998 7999999999999999999999865432110     00       1123445567899776654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.31  E-value=0.13  Score=40.36  Aligned_cols=35  Identities=17%  Similarity=0.076  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      ++++|.|||.|..|-..|..+..+|++|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            46789999999999999999999999999987643

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.12  E-value=0.13  Score=40.28  Aligned_cols=37  Identities=16%  Similarity=0.245  Sum_probs=32.2

Q ss_pred             CCCEEEEEc-CChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVG-LGRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|.+|.|-| .|.+|....+.++.+|++|++..++.++
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA   60 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence            466799998 5999999999999999999998887654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.01  E-value=0.22  Score=39.22  Aligned_cols=33  Identities=12%  Similarity=0.162  Sum_probs=30.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|-|||.|..|-..|..|...|.+|.+++++..
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            389999999999999999999999999998753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.82  E-value=0.21  Score=40.36  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=28.9

Q ss_pred             EEEEEcCChhHHHHHHHHHh--cCCcEEEECCCCc
Q 021361          146 SVGIVGLGRIGTAIAKRVEA--FGCPISYHSRSEK  178 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~--~g~~V~~~~~~~~  178 (313)
                      +|+|||.|..|-..|..|+.  +|++|.+|++.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            89999999999999998864  5889999998754

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.39  E-value=0.3  Score=35.43  Aligned_cols=36  Identities=25%  Similarity=0.220  Sum_probs=29.8

Q ss_pred             CCEEEEEcCChhHHHHHHHHHhcCC---cEEEECCCCcc
Q 021361          144 GKSVGIVGLGRIGTAIAKRVEAFGC---PISYHSRSEKS  179 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l~~~g~---~V~~~~~~~~~  179 (313)
                      .+++.|||.|.+|-.+|..+..+|.   +|..+.+...-
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            4799999999999999988887765   58888776543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=88.33  E-value=0.24  Score=40.81  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=29.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .|.|||.|.+|..+|..|...|.+|.++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999854

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.86  E-value=0.23  Score=39.82  Aligned_cols=38  Identities=24%  Similarity=0.517  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      ..++||+|.|||.|..|..+|..+...+.++...-+++
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            46899999999999999999999998888876665554

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.84  E-value=0.29  Score=41.76  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ....|.|||.|..|-.+|..|+..|.+|.++++.++
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            355799999999999999999999999999997653

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=87.76  E-value=0.23  Score=42.76  Aligned_cols=63  Identities=14%  Similarity=0.123  Sum_probs=44.9

Q ss_pred             cCCCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc--------------------cccccCCHHHHHhhCCeeE
Q 021361          142 FSGKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA--------------------NYKYYTNIIDLASNCQILI  200 (313)
Q Consensus       142 l~g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------------------~~~~~~~l~~l~~~aDvv~  200 (313)
                      -+||+|.|.|. |-||+.+++.|...|++|.+..|+..+..                    ......++++++..+|.|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            35999999996 55999999999999999988776542210                    0111235667888899877


Q ss_pred             EecC
Q 021361          201 VACS  204 (313)
Q Consensus       201 l~~p  204 (313)
                      .+.-
T Consensus        89 ~~a~   92 (342)
T d1y1pa1          89 HIAS   92 (342)
T ss_dssp             ECCC
T ss_pred             hhcc
Confidence            5543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=87.75  E-value=0.13  Score=42.93  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=28.6

Q ss_pred             CCEEEEEcCC-hhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          144 GKSVGIVGLG-RIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       144 g~~vgiiG~G-~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      ||.+-|-|.+ .||+++|+.|...|++|...+|+.+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~   37 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE   37 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5655666655 5999999999999999999998754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.46  E-value=0.22  Score=39.31  Aligned_cols=35  Identities=14%  Similarity=-0.011  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      +.++|.|||.|..|-..|..+..+|+++.++++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            35789999999999999999999999999998654

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.40  E-value=0.73  Score=39.24  Aligned_cols=126  Identities=16%  Similarity=0.167  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhcC----C-------cEEE
Q 021361          104 VADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFG----C-------PISY  172 (313)
Q Consensus       104 vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~g----~-------~V~~  172 (313)
                      +|=-+++-+++.+|-                   .++.|...+|.|.|.|.-|-.+|+.+...+    .       +|+.
T Consensus         4 Ta~V~lAglinAlki-------------------~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~l   64 (294)
T d1pj3a1           4 TAAVALAGLLAAQKV-------------------ISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWM   64 (294)
T ss_dssp             HHHHHHHHHHHHHHH-------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEE
T ss_pred             HHHHHHHHHHHHHHH-------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEE
Confidence            556677777777662                   246788899999999999999999876543    2       4888


Q ss_pred             ECCCCc----cc---ccc----------cccCCHHHHHh--hCCeeEEecCCChHhhhccCHHHHh---hcCCCcEEEEc
Q 021361          173 HSRSEK----SD---ANY----------KYYTNIIDLAS--NCQILIVACSLTEETHHIVNRKVID---ALGPSGILINI  230 (313)
Q Consensus       173 ~~~~~~----~~---~~~----------~~~~~l~~l~~--~aDvv~l~~p~~~~t~~~i~~~~l~---~mk~ga~~in~  230 (313)
                      +|+..-    ..   ...          ....++.++++  +.|+++-..    ...+++.++.++   .|.+..++.=.
T Consensus        65 vD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S----~~~g~ft~evi~~Ma~~~~~PIIFaL  140 (294)
T d1pj3a1          65 FDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVA----GAGRLFTPDVIRAMASINERPVIFAL  140 (294)
T ss_dssp             EETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECC----CSSCCSCHHHHHHHHHHCSSCEEEEC
T ss_pred             EeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhcCCceEEEec----CCCCcCCHHHHHHHHhcCCCcEEEEc
Confidence            886431    10   000          01246888876  677666543    223567777664   45688899888


Q ss_pred             CCCCcc---CHHHHHHHHHhCCceEE
Q 021361          231 GRGAHI---DEPELVSALLEGRLAGA  253 (313)
Q Consensus       231 ~rg~~v---d~~al~~al~~g~~~ga  253 (313)
                      |....-   ..+..+++ .+|+...|
T Consensus       141 SNPt~~~e~~~~~a~~~-t~grai~a  165 (294)
T d1pj3a1         141 SNPTAQAECTAEEAYTL-TEGRCLFA  165 (294)
T ss_dssp             CSSGGGCSCCHHHHHHH-TTTCCEEE
T ss_pred             cCCCCcCCcCHHHHHhh-ccCceEee
Confidence            876543   23444443 45655533

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.16  E-value=0.62  Score=37.84  Aligned_cols=62  Identities=10%  Similarity=0.116  Sum_probs=43.8

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHHh--------------------cCC-cEEEECCCCcccccccccCCHHHHHhhCCe
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVEA--------------------FGC-PISYHSRSEKSDANYKYYTNIIDLASNCQI  198 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~~--------------------~g~-~V~~~~~~~~~~~~~~~~~~l~~l~~~aDv  198 (313)
                      ..+.|++|.|||.|+++--+|+.|..                    .|. +|+.+.|+......+.. ..+.++....++
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~-~Elre~~~~~~~  113 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTI-KELREMIQLPGT  113 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCH-HHHHHHHTCTTE
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCc-hhhhcccccCCC
Confidence            46789999999999999999998876                    476 48888877654333221 235566666666


Q ss_pred             eEEe
Q 021361          199 LIVA  202 (313)
Q Consensus       199 v~l~  202 (313)
                      -+..
T Consensus       114 ~~~~  117 (225)
T d1cjca1         114 RPML  117 (225)
T ss_dssp             EEEC
T ss_pred             ccee
Confidence            5543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.13  E-value=0.39  Score=35.85  Aligned_cols=36  Identities=25%  Similarity=0.343  Sum_probs=30.2

Q ss_pred             CCEEEEEcCChhHHHHHHHH----HhcCCcEEEECCCCcc
Q 021361          144 GKSVGIVGLGRIGTAIAKRV----EAFGCPISYHSRSEKS  179 (313)
Q Consensus       144 g~~vgiiG~G~iG~~~a~~l----~~~g~~V~~~~~~~~~  179 (313)
                      ++++.|||.|.+|-.+|..|    +..|.+|+.+.+....
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            67999999999999988777    4689999988876653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.06  E-value=0.32  Score=41.24  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.|||.|..|-.+|..|+..|.+|.+++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            589999999999999999999999999998654

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=86.94  E-value=1.5  Score=33.79  Aligned_cols=48  Identities=6%  Similarity=0.022  Sum_probs=38.4

Q ss_pred             hhHHHHHHHHHhcCCcEEEECCCCccc-----ccccccCCHHHHHhhCCeeEE
Q 021361          154 RIGTAIAKRVEAFGCPISYHSRSEKSD-----ANYKYYTNIIDLASNCQILIV  201 (313)
Q Consensus       154 ~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~~l~~~aDvv~l  201 (313)
                      ++.++.+..+..+|+++.++.|..-..     .......++++.++++|+|..
T Consensus        20 ~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~t   72 (161)
T d1js1x2          20 AVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYA   72 (161)
T ss_dssp             HHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceee
Confidence            388999999999999999988864321     234456799999999999986

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=86.51  E-value=0.27  Score=38.77  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=23.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhcC---CcEEEECC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFG---CPISYHSR  175 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g---~~V~~~~~  175 (313)
                      +|||=|||+||+.+.+.+....   .+|.+.+.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd   34 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND   34 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence            7999999999999999876543   45666543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.47  E-value=0.55  Score=35.93  Aligned_cols=36  Identities=17%  Similarity=0.091  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCChhHHHHHHHHHhcCCc-EEEECCCCc
Q 021361          143 SGKSVGIVGLGRIGTAIAKRVEAFGCP-ISYHSRSEK  178 (313)
Q Consensus       143 ~g~~vgiiG~G~iG~~~a~~l~~~g~~-V~~~~~~~~  178 (313)
                      .+++|.|||.|.+|-..|..+..+|++ |+.+.|+..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            366799999999999999999999987 666666544

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=86.43  E-value=1.5  Score=37.49  Aligned_cols=109  Identities=20%  Similarity=0.186  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhc----CC-------cEEE
Q 021361          104 VADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAF----GC-------PISY  172 (313)
Q Consensus       104 vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~----g~-------~V~~  172 (313)
                      +|=-+++-+++.+|-                   .++.|...+|.|+|.|.-|-.+|+.+...    |.       +++.
T Consensus         4 Ta~V~lAglinAlki-------------------~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~   64 (308)
T d1o0sa1           4 TASVIVAGLLTCTRV-------------------TKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYL   64 (308)
T ss_dssp             HHHHHHHHHHHHHHH-------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEE
T ss_pred             HHHHHHHHHHHHHHH-------------------hCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEE
Confidence            555677777776662                   24568889999999999999999988654    32       4888


Q ss_pred             ECCCCcc-----c-cc-----c---cccCCHHHHHhhC--CeeEEecCCChHhhhccCHHHHhhc---CCCcEEEEcCCC
Q 021361          173 HSRSEKS-----D-AN-----Y---KYYTNIIDLASNC--QILIVACSLTEETHHIVNRKVIDAL---GPSGILINIGRG  233 (313)
Q Consensus       173 ~~~~~~~-----~-~~-----~---~~~~~l~~l~~~a--Dvv~l~~p~~~~t~~~i~~~~l~~m---k~ga~~in~~rg  233 (313)
                      +|+..--     . ..     .   ....++.++++..  ++++-+.    ...+.++++.++.|   .+..++.=.|..
T Consensus        65 vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i~~~kptvliG~s----~~~g~ft~evv~~Ma~~~~~PIIFaLSNP  140 (308)
T d1o0sa1          65 MDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVIRAARPGALIGAS----TVRGAFNEEVIRAMAEINERPIIFALSNP  140 (308)
T ss_dssp             EETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECS----SCTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             EeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHHhccccccEEecc----cccCCCCHHHHHHHHhhCCCcEEEEccCC
Confidence            8865311     0 00     0   0124566666643  4444332    22456666666544   477777777766


Q ss_pred             Cc
Q 021361          234 AH  235 (313)
Q Consensus       234 ~~  235 (313)
                      ..
T Consensus       141 tp  142 (308)
T d1o0sa1         141 TS  142 (308)
T ss_dssp             GG
T ss_pred             CC
Confidence            54

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.38  E-value=0.18  Score=38.76  Aligned_cols=96  Identities=10%  Similarity=0.162  Sum_probs=56.5

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCC---c----EEEECCCCccc-----------c------cccccCCHHHHHhhCCee
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGC---P----ISYHSRSEKSD-----------A------NYKYYTNIIDLASNCQIL  199 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~---~----V~~~~~~~~~~-----------~------~~~~~~~l~~l~~~aDvv  199 (313)
                      .+|.|+|. |.+|..+|-.|...+.   .    +..++......           .      ......+..+.++.||+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            48999996 9999999999986442   1    22233222110           0      011236788899999999


Q ss_pred             EEecCCCh--H-hh-hcc--CH-------HHHhh-cCCCcEEEEcCCCCccCHHHHH
Q 021361          200 IVACSLTE--E-TH-HIV--NR-------KVIDA-LGPSGILINIGRGAHIDEPELV  242 (313)
Q Consensus       200 ~l~~p~~~--~-t~-~~i--~~-------~~l~~-mk~ga~~in~~rg~~vd~~al~  242 (313)
                      +++.-...  . ++ .++  |.       ..+.. .+++++++.++  .++|.-..+
T Consensus        85 iitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs--NPvDv~t~~  139 (154)
T d1y7ta1          85 LLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG--NPANTNALI  139 (154)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHH
T ss_pred             EeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec--CcHHHHHHH
Confidence            99774321  1 11 122  11       12223 46688888875  467765544

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.34  E-value=0.36  Score=39.08  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             CCEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          144 GKSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       144 g~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      +|++-|-|. +.||+++|+.|...|++|+..+|+.+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            467777776 789999999999999999999987654

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.95  E-value=0.32  Score=38.16  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=24.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhc---CCcEEEECCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF---GCPISYHSRS  176 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~---g~~V~~~~~~  176 (313)
                      +|||=|||+||+.+.+.+...   +.+|.+.+..
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            799999999999999988643   4677766543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=85.50  E-value=0.45  Score=38.46  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=30.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|.|||.|..|-..|..|...|++|.++++...
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            388999999999999999999999999997653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=85.46  E-value=0.37  Score=40.35  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=28.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCC-cEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGC-PISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~-~V~~~~~~~  177 (313)
                      +|.|||.|.+|-++|..|...|. +|.++++..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58999999999999999999997 699998764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=85.45  E-value=0.38  Score=38.20  Aligned_cols=31  Identities=19%  Similarity=0.198  Sum_probs=28.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      -|.|||.|..|-..|..++.+|.+|.++++.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4899999999999999999999999999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=85.45  E-value=0.38  Score=38.13  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      -|.|||.|..|...|..+..+|.+|.++++..
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            48999999999999999999999999998654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=85.38  E-value=0.21  Score=38.80  Aligned_cols=37  Identities=8%  Similarity=0.116  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCh-hHHHHHHHHHhcCCcEEEECCCCcc
Q 021361          143 SGKSVGIVGLGR-IGTAIAKRVEAFGCPISYHSRSEKS  179 (313)
Q Consensus       143 ~g~~vgiiG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~  179 (313)
                      .|.+|.|.|.|. +|...++.++..|++|++.+++.++
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHH
Confidence            478999995555 9999999999999999999887654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.36  E-value=0.99  Score=36.25  Aligned_cols=61  Identities=18%  Similarity=0.269  Sum_probs=40.7

Q ss_pred             cccCCCEEEEEcCChhHHHHHHHHH--------------------hcCCc-EEEECCCCcccccccccCCHHHHHhhCCe
Q 021361          140 SKFSGKSVGIVGLGRIGTAIAKRVE--------------------AFGCP-ISYHSRSEKSDANYKYYTNIIDLASNCQI  198 (313)
Q Consensus       140 ~~l~g~~vgiiG~G~iG~~~a~~l~--------------------~~g~~-V~~~~~~~~~~~~~~~~~~l~~l~~~aDv  198 (313)
                      ..+.|++|.|||.|+++--+|+.|.                    ..|.+ |+.+.|+......+. ...+.++.+-.++
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ft-~~Elre~~~l~~~  113 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFT-TLELRELADLDGV  113 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCC-HHHHHHGGGCTTE
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCCC-hhhhhhhcccCCC
Confidence            4578999999999999999999876                    57774 877777654432221 1124445554554


Q ss_pred             eEE
Q 021361          199 LIV  201 (313)
Q Consensus       199 v~l  201 (313)
                      -..
T Consensus       114 ~~~  116 (216)
T d1lqta1         114 DVV  116 (216)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            444

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.15  E-value=0.58  Score=34.49  Aligned_cols=40  Identities=23%  Similarity=0.353  Sum_probs=35.1

Q ss_pred             ccccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          139 GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       139 ~~~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      +...+||+|.|||.|.-+-.-|..|..+.-+|+.+-|..+
T Consensus        25 ~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          25 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             hhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            4567899999999999999999999999889988877654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=85.07  E-value=0.45  Score=39.24  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=29.6

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      -|.|||.|.+|-.+|..|...|.+|.++++..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999999754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.56  E-value=0.3  Score=39.17  Aligned_cols=34  Identities=15%  Similarity=0.062  Sum_probs=29.5

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcC-------CcEEEECCCCc
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFG-------CPISYHSRSEK  178 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g-------~~V~~~~~~~~  178 (313)
                      .+|+|||.|.-|-+.|..|...|       ++|.+|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            58999999999999999998777       57999987653

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.29  E-value=0.44  Score=39.88  Aligned_cols=31  Identities=29%  Similarity=0.289  Sum_probs=28.8

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          147 VGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       147 vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      |.|||.|..|-..|..|+..|++|.+++++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998654

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=84.24  E-value=0.45  Score=37.13  Aligned_cols=32  Identities=28%  Similarity=0.369  Sum_probs=25.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhc-CCcEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF-GCPISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~-g~~V~~~~~~~  177 (313)
                      +|||=|||+||+.+.+.+... .++|.+.+...
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~   35 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL   35 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence            799999999999999988755 46777776543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.13  E-value=0.52  Score=37.51  Aligned_cols=32  Identities=22%  Similarity=0.298  Sum_probs=29.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      -|.|||.|..|-..|..+...|++|.+++...
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            58999999999999999999999999998654

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=83.94  E-value=0.79  Score=37.35  Aligned_cols=55  Identities=18%  Similarity=0.221  Sum_probs=35.5

Q ss_pred             ChhHHHHHHHHHhcCCcEEEECCCCc-cc-cccc--cc-------CCHHHHHhhCCeeEEecCCCh
Q 021361          153 GRIGTAIAKRVEAFGCPISYHSRSEK-SD-ANYK--YY-------TNIIDLASNCQILIVACSLTE  207 (313)
Q Consensus       153 G~iG~~~a~~l~~~g~~V~~~~~~~~-~~-~~~~--~~-------~~l~~l~~~aDvv~l~~p~~~  207 (313)
                      |.+|.++|+.+...|++|.++.-... .. .+..  ..       ..+.+.++++|+++.+....+
T Consensus        32 Gk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~~~~~D~~i~aAAvsD   97 (223)
T d1u7za_          32 GKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVAD   97 (223)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred             HHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhhhccceeEeeeechhh
Confidence            77999999999999999976653222 11 1211  11       223445678998888765443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.63  E-value=0.55  Score=35.47  Aligned_cols=32  Identities=25%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             CEEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          145 KSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       145 ~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .||.|||.|.+|-.+|..|+. +.+|.++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            379999999999999999975 77998888754

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=83.12  E-value=0.41  Score=37.62  Aligned_cols=101  Identities=16%  Similarity=0.174  Sum_probs=51.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhc----CCcEEEECCCCccccc-----cc-ccCCHH-HHHhhCCeeEEecCCChHhhhccC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF----GCPISYHSRSEKSDAN-----YK-YYTNII-DLASNCQILIVACSLTEETHHIVN  214 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~----g~~V~~~~~~~~~~~~-----~~-~~~~l~-~l~~~aDvv~l~~p~~~~t~~~i~  214 (313)
                      +|||=|||+||+.+.+.+...    ..+|.+.+...+...-     +. .+..++ ++-...+.+++    +.....++.
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i----~g~~i~i~~   78 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVV----NGDKIRVDA   78 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEE----TTEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEE----CCEEEEEEe
Confidence            799999999999999988643    3456666543322100     00 000000 01123333332    212222333


Q ss_pred             HHHHhhc---CCCc-EEEEcCCCCccCHHHHHHHHHhCCce
Q 021361          215 RKVIDAL---GPSG-ILINIGRGAHIDEPELVSALLEGRLA  251 (313)
Q Consensus       215 ~~~l~~m---k~ga-~~in~~rg~~vd~~al~~al~~g~~~  251 (313)
                      ....+.+   +-|. ++|. +.|.-.+.+.+..-|+.|--.
T Consensus        79 ~~~p~~i~W~~~gvDiViE-cTG~f~~~~~a~~hl~~Gakk  118 (173)
T d1obfo1          79 NRNPAQLPWGALKVDVVLE-CTGFFTTKEKAGAHIKGGAKK  118 (173)
T ss_dssp             CSCGGGSCTTTTTCSEEEE-CSSSCCSHHHHHHHHHHTCSE
T ss_pred             cCCHHHCcccccccceEEE-ecccccCHHHHHHHhccCCcc
Confidence            2222222   2233 4444 467778888888888887544

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.00  E-value=0.66  Score=35.53  Aligned_cols=32  Identities=28%  Similarity=0.195  Sum_probs=28.9

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      .|.|||.|..|-..|..+..+|++|.++++..
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence            48899999999999999999999999998643

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.96  E-value=0.39  Score=37.34  Aligned_cols=21  Identities=29%  Similarity=0.626  Sum_probs=19.0

Q ss_pred             EEEEEcCChhHHHHHHHHHhc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF  166 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~  166 (313)
                      +|+++|+|.+|+.+++.+...
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~   26 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAM   26 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHC
T ss_pred             EEEEEeCCHHHHHHHHHHHHh
Confidence            699999999999999998754

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=82.22  E-value=0.64  Score=36.34  Aligned_cols=30  Identities=27%  Similarity=0.406  Sum_probs=24.5

Q ss_pred             EEEEEcCChhHHHHHHHHHhc-CCcEEEECC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAF-GCPISYHSR  175 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~-g~~V~~~~~  175 (313)
                      +|||=|||+||+.+.+.+... ..+|.+.+.
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            799999999999999987644 567776653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.03  E-value=0.25  Score=36.66  Aligned_cols=59  Identities=15%  Similarity=0.234  Sum_probs=37.4

Q ss_pred             EEEEEcCChhHHHHHHHHH-hcCCcEE-EECCCCccc----ccccc--cCCHHHHHh-hCCeeEEecC
Q 021361          146 SVGIVGLGRIGTAIAKRVE-AFGCPIS-YHSRSEKSD----ANYKY--YTNIIDLAS-NCQILIVACS  204 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~-~~g~~V~-~~~~~~~~~----~~~~~--~~~l~~l~~-~aDvv~l~~p  204 (313)
                      +|.|+|.|++|+++++.+. ..|+++. ++|..+...    .+...  ...++++.+ ..++.++++|
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence            7999999999999998764 4577764 456554432    23222  234555544 3566666665

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=81.95  E-value=0.53  Score=38.70  Aligned_cols=57  Identities=11%  Similarity=0.226  Sum_probs=36.4

Q ss_pred             EEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCcccc-cccccCCHHHHHhh--CCeeEEec
Q 021361          146 SVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEKSDA-NYKYYTNIIDLASN--CQILIVAC  203 (313)
Q Consensus       146 ~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~~l~~~--aDvv~l~~  203 (313)
                      +|.|.|. |-||+.+++.|...|.. ++.+++..... .......+++++++  .|+|+-+.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~-v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNL-IALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEE-EEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCE-EEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence            5889985 99999999999988864 44555443221 11112345566664  48776554

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=81.86  E-value=0.68  Score=39.05  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=29.6

Q ss_pred             EEEEEcCChhHHHHHHHHH-----hcCCcEEEECCCCcc
Q 021361          146 SVGIVGLGRIGTAIAKRVE-----AFGCPISYHSRSEKS  179 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~-----~~g~~V~~~~~~~~~  179 (313)
                      -|.|||.|..|-.+|..|.     ..|.+|.++++.+..
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            5999999999999999995     579999999987643

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=81.29  E-value=4.8  Score=33.97  Aligned_cols=110  Identities=19%  Similarity=0.221  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHcCCCcCCCcccccccCCCEEEEEcCChhHHHHHHHHHhc----CC-------cEE
Q 021361          103 DVADLAVGLVLAVLRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAF----GC-------PIS  171 (313)
Q Consensus       103 ~vAE~~l~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgiiG~G~iG~~~a~~l~~~----g~-------~V~  171 (313)
                      .+|=-+++-+++.+|-                   .++.|...+|.|.|.|..|-.+|+.+...    |+       +++
T Consensus         3 GTaaV~lAglinAlki-------------------~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~   63 (298)
T d1gq2a1           3 GTASVAVAGLLAALRI-------------------TKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIW   63 (298)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------HTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHHH-------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEE
Confidence            3556677777776663                   24568889999999999999999988643    32       588


Q ss_pred             EECCCCc----cc--cc--------ccccCCHHHHHhh--CCeeEEecCCChHhhhccCHHHHh---hcCCCcEEEEcCC
Q 021361          172 YHSRSEK----SD--AN--------YKYYTNIIDLASN--CQILIVACSLTEETHHIVNRKVID---ALGPSGILINIGR  232 (313)
Q Consensus       172 ~~~~~~~----~~--~~--------~~~~~~l~~l~~~--aDvv~l~~p~~~~t~~~i~~~~l~---~mk~ga~~in~~r  232 (313)
                      .+|+..-    ..  ..        .....++.++++.  .++++-..    ..-+.+.++.++   .|.+..++.=.|.
T Consensus        64 l~D~kGlv~~~R~~l~~~k~~~a~~~~~~~~l~~~i~~vkptvliG~s----~~~g~ft~evv~~ma~~~~~PIIFaLSN  139 (298)
T d1gq2a1          64 MVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVA----AIGGAFTQQILQDMAAFNKRPIIFALSN  139 (298)
T ss_dssp             EEETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECS----CCTTCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEeCCCcccCCCcccCHHHHHHHHHhhhhhhhHHHhhccChheeEecc----cccCcCCHHHHHHHHhhCCCCEEEEccC
Confidence            8887531    10  00        0112466776654  44555433    123566666554   5567888887776


Q ss_pred             CCc
Q 021361          233 GAH  235 (313)
Q Consensus       233 g~~  235 (313)
                      ...
T Consensus       140 Pt~  142 (298)
T d1gq2a1         140 PTS  142 (298)
T ss_dssp             SGG
T ss_pred             CCC
Confidence            544

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.10  E-value=0.83  Score=38.26  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=29.4

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      |+|.|.|. |-||+.+++.|...|++|++++|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            67888875 77999999999999999999988653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.03  E-value=0.77  Score=36.46  Aligned_cols=31  Identities=26%  Similarity=0.307  Sum_probs=28.8

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRS  176 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~  176 (313)
                      .|-|||.|..|...|..++.+|.+|.++++.
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            5899999999999999999999999999864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.00  E-value=0.81  Score=37.23  Aligned_cols=34  Identities=29%  Similarity=0.250  Sum_probs=27.9

Q ss_pred             CEEEEEcC-ChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          145 KSVGIVGL-GRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       145 ~~vgiiG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      |.|-|-|. +.||+++|+.|...|++|++.+++..
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            45566675 56999999999999999998888654

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.99  E-value=0.68  Score=39.32  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=27.6

Q ss_pred             CEE-EEEc-CChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          145 KSV-GIVG-LGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       145 ~~v-giiG-~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      |+| .|.| .|-||+.+++.|...|++|++++|..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            567 4656 46799999999999999999999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.81  E-value=0.74  Score=35.98  Aligned_cols=32  Identities=13%  Similarity=0.230  Sum_probs=27.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhcC--CcEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFG--CPISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g--~~V~~~~~~~  177 (313)
                      ||.|||.|.+|-.+|..|+.++  .+|..+++..
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            7999999999999999999875  4688887654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.58  E-value=0.18  Score=40.43  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=22.7

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcE
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPI  170 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V  170 (313)
                      +|.|||.|.+|-.+|..|...|.+|
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCc
Confidence            7999999999999999999888753

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.52  E-value=4.6  Score=34.40  Aligned_cols=91  Identities=14%  Similarity=0.087  Sum_probs=66.1

Q ss_pred             ccCCCEEEEEcCChhHHHHHHHHHhcCCcEEEECCCCccc--------ccccc----------cCCHHHHHhhCCeeEEe
Q 021361          141 KFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSD--------ANYKY----------YTNIIDLASNCQILIVA  202 (313)
Q Consensus       141 ~l~g~~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~--------~~~~~----------~~~l~~l~~~aDvv~l~  202 (313)
                      -|.|-+|-=++-+.-|-...+.|..+|.+|+=+.+.....        .+.+.          ..-+.+|+++||+|+-.
T Consensus         3 PL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~n   82 (359)
T d1x74a1           3 PLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEG   82 (359)
T ss_dssp             TTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHhCCEEEEECCCCCCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEec
Confidence            3788899989999999999999999999988665432211        00000          12367899999999987


Q ss_pred             cCCChHhhhccCHHHHhhcCCCcEEEEcC
Q 021361          203 CSLTEETHHIVNRKVIDALGPSGILINIG  231 (313)
Q Consensus       203 ~p~~~~t~~~i~~~~l~~mk~ga~~in~~  231 (313)
                      .+-..-.+-=++.+.+....|+-+.+.++
T Consensus        83 ~~pg~~~~lgl~~~~l~~~nP~lI~~sis  111 (359)
T d1x74a1          83 YRPGVTERLGLGPEECAKVNDRLIYARMT  111 (359)
T ss_dssp             SCTTHHHHHTCSHHHHHHHCTTCEEEEEE
T ss_pred             CCCCchhhcCCCHHHHHhhcCCceEEEEe
Confidence            75444444456889999999999999873

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.33  E-value=0.94  Score=36.16  Aligned_cols=32  Identities=25%  Similarity=0.212  Sum_probs=29.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCC
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSE  177 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~  177 (313)
                      -|.|||.|..|...|..+..+|++|.+++..+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999998644

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=80.03  E-value=0.98  Score=36.74  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             EEEEEcCChhHHHHHHHHHhcCCcEEEECCCCc
Q 021361          146 SVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEK  178 (313)
Q Consensus       146 ~vgiiG~G~iG~~~a~~l~~~g~~V~~~~~~~~  178 (313)
                      .|-|||.|..|-..|..|...|.+|.++++...
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            489999999999999999999999999998754